Microbiota STability ASsessment via Iterative cluStering
c(
person(given = "Pedro",
family = "Sánchez-Sánchez",
role = c("aut", "cre"),
email = "bio.pedro.technology@gmail.com",
comment = c(ORCID = "0000-0002-4846-1813")),
person(given = "Alfonso",
family = "Benítez-Páez",
role = c("aut"),
email = "alfbenpa@gmail.com",
comment = c(ORCID = "0000-0001-5707-4340")))
The toolkit 'µSTASIS' has been developed for the stability analysis of microbiota in a temporal framework by leveraging on iterative clustering. Concretely, the core function uses Hartigan-Wong k-means algorithm as many times as possible for stressing out paired samples from the same individuals to test if they remain together for multiple numbers of clusters over a whole data set of individuals. Moreover, the package includes multiple functions to subset samples from paired times, validate the results or visualize the output.
crayon, fmsb, future, future.apply, ggplot2, ggside,
progressr, reshape2, stats, stringr
Pedro Sánchez-Sánchez [aut, cre]
(<https://orcid.org/0000-0002-4846-1813>),
Alfonso Benítez-Páez [aut] (<https://orcid.org/0000-0001-5707-4340>)

Seong Hyun Hwang with contributions from Rachel Myoung Moon
A nature-inspired metaheuristic algorithm based on the echolocation behavior of microbats that uses frequency tuning to optimize problems in both continuous and discrete dimensions. This R package makes it easy to implement the standard bat algorithm on any user-supplied function. The algorithm was first developed by Xin-She Yang in 2010 (<DOI:10.1007/978-3-642-12538-6_6>, <DOI:10.1109/CINTI.2014.7028669>).

Sub microsecond accurate timing functions.

'autoplot.R' 'boxplot.R' 'internal.R' 'microbenchmark.R'
'microtiming_precision.R' 'print.R' 'summary.R'

c( person("Olaf", "Mersmann", role=c("aut", "cre"),
email="olafm@p-value.net"), person("Claudia", "Beleites",
role=c("ctb")), person("Rainer", "Hurling", role=c("ctb")),
person("Ari", "Friedman", role=c("ctb")))
Olaf Mersmann [aut, cre],
Claudia Beleites [ctb],
Rainer Hurling [ctb],
Ari Friedman [ctb]