Gene and Splice Site Annotation Using Annotation Data from
Ensembl and UCSC Genome Browsers

Contains functionality for import and managing of downloaded genome annotation Data from Ensembl genome browser (European Bioinformatics Institute) and from UCSC genome browser (University of California, Santa Cruz) and annotation routines for genomic positions and splice site positions.

Orphaned and corrected on 2018-12-29 as maintainer's
email address bounced when asked for a correction.

Gene and Splice Site Annotation Using Annotation Data from
'Ensembl' and 'UCSC' Genome Browsers
c(person("Wolfgang", "Kaisers", role=c("aut", "cre"),
email="wolfgang.kaisers@gmail.com"))
Contains functionalities for importing and managing downloaded genome annotation data from 'Ensembl' genome browser (European Bioinformatics Institute, <https://www.ensembl.org>) and from 'UCSC' genome browser (University of California, Santa Cruz, <https://genome.ucsc.edu/>) and annotation routines for genomic positions and splice site positions.

Reference database manager offering a set of functions
to import, organize, clean, filter, audit and export reference genetic
data. Provide functions to download sequence data from
Bold Systems (<https://www.boldsystems.org/>) and
NCBI GenBank <https://www.ncbi.nlm.nih.gov/genbank/>.
Designed as an environment for semi-automatic and assisted
construction of reference databases and to improve standardization
and repeatability in barcoding and metabarcoding studies.
tibble, readr, dplyr, stringr, tidyr, rentrez, bold, taxize,
xml2, bioseq, ape, igraph, ggplot2, ggraph, yaml, rlang,
rmarkdown, leaflet
testthat (>= 3.0.0), covr, DT, knitr, forcats

Allows users to easily create references to R objects then
'dereference' when needed or modify in place without using reference
classes, environments, or active bindings as workarounds. Users can
also create expression references that allow subsets of any object to
be referenced or expressions containing references to multiple
objects.