Interface to Colombos Compendia using the exposed REST API
This package provides programmatic access to Colombos, a
web based interface for exploring and analyzing comprehensive
organism-specific cross-platform expression compendia of
bacterial organisms.

This package provides programmatic access to Colombos, a web based
interface for exploring and analyzing comprehensive organism-specific
cross-platform expression compendia of bacterial organisms.

Interface to Colombos Compendia using the Exposed REST API
Provides programmatic access to Colombos, a web based
interface for exploring and analyzing comprehensive organism-specific
cross-platform expression compendia of bacterial organisms.

Utilities for using the 'COM(P)ADRE' Matrix Model Database
c(
person(given = "Patrick",
family = "Barks",
email = "barks@biology.sdu.dk",
role = "aut",
comment = c(ORCID = "0000-0002-5947-8151")),
person(given = "Danny",
family = "Buss",
email = "dlb50@cam.ac.uk",
role = "aut"),
person(given = "Roberto",
family = "Salguero-Gomez",
email = "rob.salguero@zoo.ox.ac.uk",
role = "aut",
comment = c(ORCID = "0000-0002-6085-4433")),
person(given = "Iain",
family = "Stott",
email = "stott@biology.sdu.dk",
role = "aut",
comment = c(ORCID = "0000-0003-2724-7436")),
person(given = "William K.",
family = "Petry",
email = "wpetry@ncsu.edu",
role = "aut",
comment = c(ORCID = "0000-0002-5230-5987")),
person(given = "Tamora",
family = "James",
email = "tamoradjames@protonmail.com",
role = "aut",
comment = c(ORCID = "0000-0003-1363-4742")),
person(given = "Owen",
family = "Jones",
email = "jones@biology.sdu.dk",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-5720-4686")),
person(given = "Julia",
family = "Jones",
email = "juagjones@gmail.com",
role = "aut",
comment = c(ORCID = "0000-0001-9223-1778")),
person(given = "Gesa",
family = "Römer",
email = "gesa@biology.sdu.dk",
role = "aut",
comment = c(ORCID = "0000-0002-4859-5870")),
person(given = "Sam",
family = "Levin",
role = "aut",
email = "levisc8@gmail.com",
comment = c(ORCID = "0000-0002-3289-9925")))
Utility functions for interacting with the 'COMPADRE' and 'COMADRE' databases of matrix population models. Described in Jones et al. (2021) <doi:10.1101/2021.04.26.441330>.
spelling, knitr, rmarkdown, testthat, popbio, ggplot2, maps,
dplyr, ggtern, covr, rcrossref
'CompadreDB.R' 'CompadreDB-Methods.R'
'CompadreDB-Subsetting.R' 'CompadreDB-Tidyverse.R'
'CompadreMat.R' 'ClassUnionMethods.R' 'cdb_check_species.R'
'cdb_collapse.R' 'cdb_compare.R' 'cdb_fetch.R' 'cdb_flag.R'
'cdb_flatten.R' 'cdb_id.R' 'cdb_id_stages.R' 'cdb_id_studies.R'
'cdb_mean_matF.R' 'cdb_metadata.R' 'cdb_rbind.R'
'cdb_unflatten.R' 'cdb_unnest.R' 'data.R' 'mpm_mean.R'
'mpm_methods.R' 'string_representation.R' 'zzz.R'