'pomp-package.R' 'aaa.R' 'pstop.R' 'undefined.R' 'csnippet.R'
'pomp_fun.R' 'parameter_trans.R' 'covariate_table.R'
'skeleton_spec.R' 'rprocess_spec.R' 'safecall.R' 'pomp_class.R'
'load.R' 'workhorses.R' 'continue.R' 'prior_spec.R'
'dmeasure_spec.R' 'dprocess_spec.R' 'rmeasure_spec.R'
'rinit_spec.R' 'templates.R' 'builder.R' 'pomp.R' 'probe.R'
'abc.R' 'accumulators.R' 'kalman.R' 'proposals.R' 'pfilter.R'
'pmcmc.R' 'mif2.R' 'listie.R' 'simulate.R' 'spect.R' 'plot.R'
'bsmc2.R' 'as_data_frame.R' 'as_pomp.R' 'authors.R' 'bake.R'
'basic_probes.R' 'blowflies.R' 'bsflu.R' 'bsplines.R' 'coef.R'
'concat.R' 'cond_logLik.R' 'covmat.R' 'dacca.R' 'traces.R'
'deprecated.R' 'design.R' 'distributions.R' 'ebola.R'
'eff_sample_size.R' 'extract.R' 'filter_mean.R' 'filter_traj.R'
'flow.R' 'forecast.R' 'gompertz.R' 'probe_match.R'
'spect_match.R' 'summary.R' 'nlf.R' 'trajectory.R'
'traj_match.R' 'objfun.R' 'loglik.R' 'logmeanexp.R' 'lookup.R'
'measles.R' 'melt.R' 'obs.R' 'ou2.R' 'parmat.R' 'parus.R'
'pipe.R' 'pomp_examp.R' 'pred_mean.R' 'pred_var.R' 'show.R'
'print.R' 'profile_design.R' 'resample.R' 'ricker.R'
'runif_design.R' 'rw2.R' 'sannbox.R' 'sir.R' 'slice_design.R'
'sobol.R' 'spy.R' 'states.R' 'time.R' 'timezero.R'
'transformations.R' 'userdata.R' 'verhulst.R' 'window.R'

ggplot2, knitr, tidyr, dplyr, subplex, nloptr
'pomp-package.R' 'aaa.R' 'pstop.R' 'undefined.R' 'csnippet.R'
'pomp_fun.R' 'parameter_trans.R' 'covariate_table.R'
'skeleton_spec.R' 'rprocess_spec.R' 'safecall.R' 'pomp_class.R'
'load.R' 'workhorses.R' 'continue.R' 'prior_spec.R'
'dmeasure_spec.R' 'dprocess_spec.R' 'rmeasure_spec.R'
'rinit_spec.R' 'templates.R' 'builder.R' 'pomp.R' 'probe.R'
'abc.R' 'accumulators.R' 'kalman.R' 'pfilter.R' 'wpfilter.R'
'proposals.R' 'pmcmc.R' 'mif2.R' 'listie.R' 'simulate.R'
'spect.R' 'plot.R' 'bsmc2.R' 'as_data_frame.R' 'as_pomp.R'
'authors.R' 'bake.R' 'basic_probes.R' 'blowflies.R' 'bsflu.R'
'bsplines.R' 'coef.R' 'concat.R' 'cond_logLik.R' 'covmat.R'
'dacca.R' 'design.R' 'distributions.R' 'ebola.R'
'eff_sample_size.R' 'extract.R' 'filter_mean.R' 'filter_traj.R'
'flow.R' 'forecast.R' 'gompertz.R' 'probe_match.R'
'spect_match.R' 'summary.R' 'nlf.R' 'trajectory.R'
'traj_match.R' 'objfun.R' 'loglik.R' 'logmeanexp.R' 'lookup.R'
'measles.R' 'melt.R' 'obs.R' 'ou2.R' 'parmat.R' 'parus.R'
'pipe.R' 'pomp_examp.R' 'pred_mean.R' 'pred_var.R' 'show.R'
'print.R' 'profile_design.R' 'resample.R' 'ricker.R'
'runif_design.R' 'rw2.R' 'sannbox.R' 'saved_states.R' 'sir.R'
'slice_design.R' 'sobol.R' 'spy.R' 'states.R' 'time.R'
'timezero.R' 'traces.R' 'transformations.R' 'userdata.R'
'verhulst.R' 'window.R'