Federico Girosi <girosi@rand.org>
Gary King <king@harvard.edu>
Elena Villalon <evillalon@latte.harvard.edu>
Jon Bischof <jbischof@fas.harvard.edu>
Konstantin Kashin <kkashin@fas.harvard.edu>
grid, gridExtra, lattice, foreign, reshape2
Software accompanying the book by Girosi and King: Demographic Forecasting.
Four different forecast models (i.e, OLS, LC, POISSON, and MAP).
The driver of the simulation is function mortality.driver(),
with your choices of input parameters, such as country, disease, and gender, and
many others; please read the software manual.
(C) 2007-2013. Federico Girosi and Gary King.

R (>= 2.15.0), foreign, ggplot2, reshape2, gridExtra, lattice

Plant architectural analysis with Yplant and QuasiMC.
Remko Duursma. QuasiMC by Mik Cieslak. Uses code by Robert
Pearcy (Yplant) and Belinda Medlyn (MAESTRA).
R (>= 2.10), rgl, geometry, LeafAngle, devtools
An R implementation of Yplant, combined with the QuasiMC
raytracer. Calculate radiation absorption, transmission and
scattering, photosynthesis and transpiration of virtual 3D
plants.

Plant Architectural Analysis with Yplant and QuasiMC
Remko Duursma. QuasiMC by Mik Cieslak. Uses code by Robert Pearcy
(Yplant) and Belinda Medlyn (MAESTRA)
R (>= 2.10), rgl, geometry, LeafAngle, gplots
An R implementation of Yplant, combined with the QuasiMC
raytracer. Calculate radiation absorption, transmission and scattering,
photosynthesis and transpiration of virtual 3D plants.

YuGene for comparing gene expression across platforms
YuGene is a simple method for comparison of gene
expression generated across different experiments, and on
different platforms; that does not require global
renormalization, and is not restricted to comparison of
identical probes. YuGene works on a range of microarray dataset
distributions, such as between manufacturers. The resulting
output allows direct comparisons of gene expression between
experiments and experimental platforms.

YuGene: A simple approach to scale gene expression data derived
from different platforms for integrated analyses
Kim-Anh Le Cao, Florian Rohart, Leo McHugh, Othmar Korn, Christine A. Wells