Analytical Procedures in Support of Brazilian Public Sector
External Auditing
Set of analytical procedures based on advanced data analysis in support of Brazil's public sector external control activity.

Conjugate gradient minimization of nonlinear functions with box
constraints
Conjugate gradient minimization of nonlinear functions
with box constraints incorporating Dai/Yuan update

Conjugate Gradient Minimization of Nonlinear Functions
Conjugate gradient minimization of nonlinear functions
with box constraints incorporating the Dai/Yuan update. This
implementation should be used in place of the "CG" algorithm
of the optim() function.

Conjugate Gradient Minimization of Nonlinear Functions with Box
Constraints
c( person(given = c("John", "C."), family = "Nash", role =
c("aut", "cre"), email = "nashjc@uottawa.ca") )
Conjugate gradient minimization of nonlinear functions with box constraints using Dai/Yuan update.

Title: R interface for the ChemCpp library
Rchemcpp compares sets of molecules and returns a
similarity matrix.  This matrix can be used as input to support
vector machines.  It wraps the c++ library 'chemcpp' by P. Mahe
and J.-L. Perret to emulate the tools "sd2gram",
"sd2gram3Dspectrum", "sd2gramSubtree", "sd2gram3Dpharma" and
"sd2gramSpectrum".
Rcpp (>= 0.9.13), R (>= 2.15.0), RcppClassic, methods
Rmolecule, Rmoleculeset, Relements, spectrumhelper,
spectrum3Dhelper, subtreehelper
'getMoleculeNamesFromSDF.R' 'sd2gram3Dpharma.R'
'sd2gram3Dspectrum.R' 'sd2gram.R' 'sd2gramSpectrum.R'
'sd2gramSubtree.R' 'utility.R' 'zzz.R' 'roxygen.R'

An R package for computing the similarity of molecules
The Rchemcpp package implements the marginalized graph
kernel and extensions, Tanimoto kernels, graph kernels,
pharmacophore and 3D kernels suggested for measuring the
similarity of molecules.

A set of functions to generate, access and analyze standard data products from archival tagging data.
plyr, akima, maptools, graphics, stats, raster, rgeos, ncdf4,
maps, mapdata, grDevices, oceanmap, sp, methods, PBSmapping