Three algorithms for estimating a Markov random field structure.Two of them are an exact version and a simulated annealing version of a penalized maximum conditional likelihood method similar to the Bayesian Information Criterion (Frondana, 2016) <doi:10.11606/T.45.2018.tde-02022018-151123>.The third one is a greedy algorithm based on information theory (Bresler, 2015).

Simulation from an 'mrgsolve'
<https://cran.r-project.org/package=mrgsolve> model using a parallel backend.
Input data sets are split (chunked) and simulated in parallel using
mclapply() or future_lapply()
<https://cran.r-project.org/package=future.apply>.

parallel, dplyr, future, future.apply, callr, fst

c(person("Kyle", "Baron", "", "kylebtwin@imap.cc", c("aut", "cre")))
Perform sensitivity analysis on ordinary differential equation
based models, including ad-hoc graphical analyses based on structured
sequences of parameters as well as local sensitivity analysis. Functions
are provided for creating inputs, simulating scenarios and plotting outputs.
withr, purrr, dplyr, assertthat, rlang, ggplot2, tidyselect,
tidyr, methods, tibble, patchwork
'utils.R' 'parseq.R' 'sens.R' 'AAA.R' 'lsa.R' 'sens_each.R'
'sens_grid.R' 'sens_plot.R' 'sens_run.R' 'seq.R'

c(
person("Kyle T", "Baron", email = "kyleb@metrumrg.com", role=c("aut", "cre"), comment=c(ORCID="0000-0001-7252-5656")),
person("Bill", "Gillespie", role = "ctb"),
person("Charles", "Margossian", role = "ctb"),
person("Devin", "Pastoor", role = "ctb"),
person("Bill", "Denney", role = "ctb", comment=c(ORCID="0000-0002-5759-428X")),
person("Dilawar", "Singh", role = "ctb"),
person("Metrum Research Group", role = "cph")
)
Fast simulation from ordinary differential equation (ODE) based
models typically employed in quantitative pharmacology and systems biology.
lattice, testthat, xml2 (>= 1.2.0), rmarkdown, yaml, knitr
'RcppExports.R' 'utils.R' 'package.R' 'generics.R'
'class_tgrid.R' 'class_numericlist.R' 'class_matlist.R'
'class_ev.R' 'class_derived.R' 'class_mrgmod.R'
'class_mrgsims.R' 'Aaaa.R' 'annot.R' 'chain.R' 'class_build.R'
'events.R' 'class_rx.R' 'compile.R' 'data_set.R' 'datasets.R'
'env.R' 'funset.R' 'handle_spec_block.R' 'idata_set.R' 'init.R'
'inven.R' 'knobs.R' 'matlist.R' 'matrix.R' 'mcode.R'
'model_include.R' 'modlib.R' 'modspec.R' 'mread.R'
'mrgindata.R' 'mrgsim_q.R' 'mrgsims.R' 'mrgsolve.R' 'nmxml.R'
'param.R' 'print.R' 'r_to_cpp.R' 'realize_addl.R' 'relabel.R'
'render.R' 'update.R' 'workflows.R'
Kyle T Baron [aut, cre] (<https://orcid.org/0000-0001-7252-5656>),
Bill Gillespie [ctb],
Charles Margossian [ctb],
Devin Pastoor [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Dilawar Singh [ctb],
Metrum Research Group [cph]