O. Julià, G. Gómez, C. Serrat and J. Cortés
Carles Serrat <carles.serrat@upc.edu> and Jorge Cortés
<jcortes@iconcologia.net>
This R package implements the doubly censoring estimation
methodology described at 'Simultaneous marginal survival
estimators when doubly censored data is present' (O. Julià and
G. Gómez, 2011).

Genetic Relatedness Between Polyclonal Infections
person("Inna", "Gerlovina",
role = c("aut", "cre"),
email = "innager@berkeley.edu",
comment = c(ORCID = "0000-0002-7772-7473"))
An implementation of Dcifer (Distance for complex infections: fast estimation of relatedness), an identity by descent (IBD) based method to calculate genetic relatedness between polyclonal infections from biallelic and multiallelic data. The package includes functions that format and preprocess the data, implement the method, and visualize the results.
Gerlovina et al. (2022) <doi:10.1101/2022.04.14.488406>.
Inna Gerlovina [aut, cre] (<https://orcid.org/0000-0002-7772-7473>)

An implementation of Dcifer (Distance for complex infections: fast estimation of relatedness), an identity by descent (IBD) based method to calculate genetic relatedness between polyclonal infections from biallelic and multiallelic data. The package includes functions that format and preprocess the data, implement the method, and visualize the results.
Gerlovina et al. (2022) <doi:10.1093/genetics/iyac126>.

Data Cloning and MCMC Tools for Maximum Likelihood Methods
Low level functions for implementing maximum likelihood
estimating procedures for complex models using data cloning and
Bayesian Markov chain Monte Carlo methods with support for
JAGS, WinBUGS and OpenBUGS.
R (>= 2.7.0), rjags, coda (>= 0.13), R2WinBUGS, mvnormtest

Low level functions for implementing maximum likelihood
estimating procedures for complex models using data cloning and
Bayesian Markov chain Monte Carlo methods with support for
JAGS, WinBUGS and OpenBUGS. Parallel computing with JAGS is
supported.
R (>= 2.7.0), rjags, coda (>= 0.13), R2WinBUGS, snow