c(person("Jason", "Vander Heiden", role=c("aut", "cre"),
email="jason.vanderheiden@yale.edu"),
person("Namita", "Gupta", role=c("aut"),
email="namita.gupta@yale.edu"),
person("Susanna", "Marquez", role=c("ctb"),
email="susanna.marquez@yale.edu"),
person("Daniel", "Gadala-Maria", role=c("ctb"),
email="daniel.gadala-maria@yale.edu"),
person("Ruoyi", "Jiang", role=c("ctb"),
email="ruoyi.jiang@yale.edu"),
person("Nima", "Nouri", role=c("ctb"),
email="nima.nouri@yale.edu"),
person("Steven", "Kleinstein", role=c("aut", "cph"),
email="steven.kleinstein@yale.edu"))
Provides methods for high-throughput adaptive immune
receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In
particular, immunoglobulin (Ig) sequence lineage reconstruction,
lineage topology analysis, diversity profiling, amino acid property
analysis and gene usage.
Citations:
Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>,
Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.
dplyr (>= 0.5.0), graphics, grid, igraph (>= 1.0.0), lazyeval,
methods, progress, Rcpp (>= 0.12.12), readr, scales, seqinr,
stats, stringi, tidyr, utils
Jason Vander Heiden [aut, cre],
Namita Gupta [aut],
Susanna Marquez [ctb],
Daniel Gadala-Maria [ctb],
Ruoyi Jiang [ctb],
Nima Nouri [ctb],
Steven Kleinstein [aut, cph]

c(person("Jason", "Vander Heiden", role=c("aut", "cre"),
email="jason.vanderheiden@yale.edu"),
person("Namita", "Gupta", role=c("ctb"),
email="namita.gupta@yale.edu"),
person("Daniel", "Gadala-Maria", role=c("ctb"),
email="daniel.gadala-maria@yale.edu"),
person("Susanna", "Marquez", role=c("ctb"),
email="susanna.marquez@yale.edu"),
person("Roy", "Jiang", role=c("ctb"),
email="ruoyi.jiang@yale.edu"))
Core functionality, lineage reconstruction, and diversity analysis,
and amino acid property analysis components of the Change-O tool suite.
dplyr, graphics, grid, igraph (>= 1.0.0), lazyeval, methods,
scales, seqinr, stats, stringi, utils
'Alakazam.R' 'AminoAcids.R' 'Core.R' 'Diversity.R'
'GeneUsage.R' 'Lineage.R' 'Sequence.R'
Jason Vander Heiden [aut, cre],
Namita Gupta [ctb],
Daniel Gadala-Maria [ctb],
Susanna Marquez [ctb],
Roy Jiang [ctb]