Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme
VArying) Model
Reversible Jump MCMC (RJ-MCMC)sampling for approximating the posterior
distribution of a time varying regulatory network, under the Auto Regressive TIme VArying
(ARTIVA) model (for a detailed description of the algorithm, see Lebre et al. BMC Systems
Biology, 2010). Starting from time-course gene expression measurements for a gene of
interest (referred to as "target gene") and a set of genes (referred to as "parent genes")
which may explain the expression of the target gene, the ARTIVA procedure identifies
temporal segments for which a set of interactions occur between the "parent genes" and the
"target gene". The time points that delimit the different temporal segments are referred to
as changepoints (CP).

Gene and Pathway p-values computed using the Adaptive Rank
Truncated Product
A package for calculating gene and pathway p-values using the Adaptive Rank Truncated Product test

Gene and Pathway p-Values Computed using the Adaptive Rank
Truncated Product
For calculating gene and pathway p-values using the Adaptive Rank Truncated Product test.

Han Zhang, Bill Wheeler, Kai Yu, Yifan Yang
R (>= 2.10), parallel, Formula, data.table, stats, utils
Pathway and gene level association test using raw data or summary statistics.

R (>= 2.10), Formula, data.table, stats, utils, parallel

Han Zhang, Bill Wheeler, Kai Yu, Yifan Yang, R Core Team

R (>= 3.4.0), Formula, data.table, stats, utils, parallel

Formula, parallel, data.table (>= 1.9.4)

Who Ever Care About the [Art of R] Scripts?
person(given = "Huanyuan",
family = "Zhang",
role = c("aut", "cre"),
email = "hyzhang1996@gmail.com",
comment = c(ORCID = "0000-0003-4801-8771"))
Decorate your comments and keep them neat! Please check <https://github.com/Hzhang-ouce/ARTofR> for instructions.
Huanyuan Zhang [aut, cre] (<https://orcid.org/0000-0003-4801-8771>)

For instructions, check <https://github.com/Hzhang-ouce/ARTofR>. This is a wrapper of 'bannerCommenter', for generating neat comments!
bannerCommenter (>= 1.0.0), clipr (>= 0.4.0)