ape, geiger, phytools, abind, phylolm, GPfit, dtw

Phylogenetic Comparative Methods for High-Dimensional Traits
Tools for studying the evolution of high-dimensional traits
(morphometric, function-valued, etc.) including ancestral state reconstruction,
estimating phylogenetic signal, and assessing correlated trait evolution. Visit
<http://www.phylocurve.org> for more information.
Rcpp, ape, drc, dtw, geiger, geomorph (>= 3.0.0), GPfit,
Matrix, mvnmle, phylolm, phytools, rgl, doParallel, foreach,
parallel, grDevices, graphics, stats, utils

Tools for studying the evolution of high-dimensional traits (morphometric, function-valued, etc.) including ancestral state reconstruction, estimating phylogenetic signal, and assessing correlated trait evolution. Visit http://www.phylocurve.org for more information.
Rcpp, ape, drc, dtw, geiger, geomorph (>= 3.0.0), GPfit,
Matrix, mvnmle, phylolm, phytools, rgl, doSNOW, doParallel,
foreach, parallel, grDevices, graphics, stats, utils

Tools for studying the evolution of high-dimensional traits
(morphometric, function-valued, etc.) including ancestral state reconstruction,
estimating phylogenetic signal, and assessing correlated trait evolution. Visit
http://www.phylocurve.org for more information.

Rcpp, ape, drc, dtw, geiger, geomorph (>= 3.0.0), GPfit,
Matrix, phylolm, phytools, rgl, doParallel, foreach, parallel,
grDevices, graphics, stats, utils

Michael Karcher, Julia Palacios, Shiwei Lan, Vladimir Minin
Statistical tools for reconstructing population size from genetic
sequence data.

Contains functions for importing and exporting 'dendrogram'
objects in parenthetic text format, and several
functions for command-line tree manipulation.
With an emphasis on speed and computational efficiency,
the package also includes a suite of tools for rapidly computing
distance matrices and building large trees using fast alignment-free
'k-mer' counting and divisive clustering techniques.

Contains functions for importing and exporting 'dendrogram'
objects in parenthetic text format, as well as several
functions for command-line tree manipulation.