Peter Solymos [cre, aut], Monica Moreno [aut], Subhash R. Lele [aut]
Models for analyzing site occupancy and count data models
with detection error, including single-visit based models,
conditional distance sampling and time-removal models.
Package development was supported by the
Alberta Biodiversity Monitoring Institute (www.abmi.ca)
and the Boreal Avian Modelling Project (borealbirds.ca).

Models for analyzing site occupancy and count data models
with detection error, including single-visit based models,
conditional distance sampling and time-removal models.
Package development was supported by the
Alberta Biodiversity Monitoring Institute (<https://www.abmi.ca>)
and the Boreal Avian Modelling Project (<https://borealbirds.ualberta.ca>).

Models for analyzing site occupancy and count data models
with detection error, including single-visit based models,
conditional distance sampling and time-removal models.
Package development was supported by the
Alberta Biodiversity Monitoring Institute
and the Boreal Avian Modelling Project.

Matthew Gampe [aut, cre],
Changryong Baek [aut],
Kathleen M. Gates [aut],
Vladas Pipiras [aut]
Time series analysis of network connectivity. Detects and visualizes change points
between networks. Methods included in the package are discussed in depth in Baek, C., Gates, K. M., Leinwand, B., Pipiras, V. (2021) "Two sample tests for high-dimensional auto- covariances" <doi:10.1016/j.csda.2020.107067>
and Baek, C., Gampe, M., Leinwand B., Lindquist K., Hopfinger J. and Gates K. (2021) “Detecting functional connectivity changes in fMRI data”. Preprint.
signal, lavaan, doParallel, graphics, glasso, stats,
LogConcDEAD, foreach, parallel

Detect Runs of Homozygosity and Runs of Heterozygosity in
Diploid Genomes
c(
person("Filippo","Biscarini", email="filippo.biscarini@gmail.com", role=c("aut", "cre")),
person("Paolo","Cozzi", email="paolo.cozzi@ptp.it", role="aut"),
person("Giustino","Gaspa", email="gigaspa@uniss.it", role="aut"),
person("Gabriele","Marras", email="gmarras@uoguelph.ca", role="aut")
)
Detection of runs of homozygosity and of heterozygosity
in diploid genomes using two methods: sliding windows (Purcell et al (2007)
<doi:10.1086/519795>) and consecutive runs (Marras et al (2015)
<doi:10.1111/age.12259>).
plyr, iterators, itertools, ggplot2, reshape2, Rcpp,
gridExtra, data.table
Filippo Biscarini [aut, cre],
Paolo Cozzi [aut],
Giustino Gaspa [aut],
Gabriele Marras [aut]