Create interactive manhattan, Q-Q and volcano plots that are usable from the R console,
in 'Dash' apps, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps.
Hover the mouse pointer over a point to show details or drag a rectangle to
zoom. A manhattan plot is a popular graphical method for visualizing results
from high-dimensional data analysis such as a (epi)genome wide association study
(GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on a scatter
plot against their genomic position. Manhattan plots are used for visualizing
potential regions of interest in the genome that are associated with a phenotype.
Interactive manhattan plots allow the inspection of specific value (e.g. rs number or
gene name) by hovering the mouse over a cell, as well as zooming into a region of the
genome (e.g. a chromosome) by dragging a rectangle around the relevant area.
This work is based on the 'qqman' package and the 'plotly.js'
engine. It produces similar manhattan and Q-Q plots as the 'manhattan' and 'qq'
functions in the 'qqman' package, with the advantage of including extra annotation
information and interactive web-based visualizations directly from R.
Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them)
can be viewed and modified in a web browser.

This plot integrates annotation into a manhattan plot. The plot is implemented as a heatmap, which is binned using -log10(p-value) and chromosome position. Annotation currently supported is minor allele frequency and gene function high impact variants.

Access and Process Data and Documents of the Manifesto Project
c(person("Jirka", "Lewandowski",
role = c("aut", "cre"),
email = "jirka.lewandowski@wzb.eu"),
person("Nicolas", "Merz",
role = c("aut"),
email = "nicolas.merz@wzb.eu"),
person("Sven", "Regel",
role = c("ctb"),
email = "sven.regel@wzb.eu"),
person("Pola", "Lehmann",
role = c("ctb"),
email = "pola.lehmann@wzb.eu"))
Provides access to coded election programmes from
the Manifesto Corpus and to the Manifesto Project's Main Dataset. The Manifesto
Project (https://manifesto-project.wzb.eu) collects and analyses election
programmes across time and space to measure the political preferences
of parties. The Manifesto Corpus contains the collected
and annotated election programmes in the Corpus format of the package 'tm' to enable
easy use of text processing and text mining functionality. Specific functions
for scaling of coded political texts are included.
utils, httr (>= 0.3), jsonlite (>= 0.9.12), functional (>=
0.6)
manifestoR-package.r globals.R cache.R db_api.R corpus.R
manifesto.R codes.R scaling_general.R scaling_rile.R
scaling_functions.R scaling_bootstrap.R renaming.R
Jirka Lewandowski [aut, cre],
Nicolas Merz [aut],
Sven Regel [ctb],
Pola Lehmann [ctb]