c(person("Klaus", "Schliep", email="klaus.schliep@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2941-0161")),
person("Emmanuel", "Paradis", role = c("aut"), comment = c(ORCID = "0000-0003-3092-2199")),
person("Leonardo", "de Oliveira Martins", role = c("aut"), comment = c(ORCID = "0000-0001-5247-1320")),
person("Alastair", "Potts", role = c("aut")),
person("Tim W.", "White", role = c("aut")),
person("Cyrill", "Stachniss", role = c("ctb")),
person("Michelle", "Kendall", email="m.kendall@imperial.ac.uk", role = c("ctb")),
person("Keren", "Halabi", role = c("ctb")),
person("Richel", "Bilderbeek", role = c("ctb")),
person("Kristin", "Winchell", role = c("ctb")),
person("Liam", "Revell", role = c("ctb")),
person("Mike", "Gilchrist", role=c("ctb")),
person("Jeremy", "Beaulieu", role=c("ctb")),
person("Brian", "O'Meara", role=c("ctb")),
person("Long", "Qu", role=c("ctb")))
Allows for estimation of phylogenetic trees and networks using
Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard
conjugation. Offers methods for tree comparison, model selection and
visualization of phylogenetic networks as described in Schliep et al. (2017)
<doi:10.1111/2041-210X.12760>.
quadprog, igraph (>= 1.0), Matrix, parallel, methods, utils,
stats, graphics, grDevices, fastmatch, magrittr, Rcpp (>=
1.0.4)
tinytest, seqinr, xtable, rgl, prettydoc, knitr, rmarkdown,
magick, seqLogo, Biostrings

Allows for estimation of phylogenetic trees and networks
using Maximum Likelihood, Maximum Parsimony, distance methods and
Hadamard conjugation. Offers methods for tree comparison, model
selection and visualization of phylogenetic networks as described in
Schliep et al. (2017) <doi:10.1111/2041-210X.12760>.
fastmatch, graphics, grDevices, igraph (>= 1.0), magrittr,
Matrix, methods, parallel, quadprog, Rcpp (>= 1.0.4), stats,
utils

fastmatch, graphics, grDevices, igraph (>= 1.0), Matrix,
methods, parallel, quadprog, Rcpp, stats, utils

fastmatch, generics, graphics, grDevices, igraph (>= 1.0),
Matrix, methods, parallel, quadprog, Rcpp, stats, utils