utils, tibble, dplyr, tidyr, shiny, scales, ggplot2,
ggbeeswarm, ggrepel, ggpubr, gtools, magrittr, knitr,
rmarkdown, sessioninfo

c(person(given = "Mickaël",
family = "Canouil",
role = c("aut", "cre"),
email = "mickael.canouil@cnrs.fr",
comment = c(ORCID = "0000-0002-3396-4549")),
person(given = "Roderick",
family = "Slieker",
role = "aut",
email = "R.C.Slieker@lumc.nl",
comment = c(ORCID = "0000-0003-0961-9152")),
person(given = "Gerard",
family = "Bouland",
role = "aut",
email = "G.A.Bouland@lumc.nl"))
NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
<doi:10.1038/nbt1385>).  Each barcode is assigned a
messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
target can be counted.  As a result each count of a specific barcode
represents the presence of its target mRNA/miRNA.  'NACHO' (NAnoString
quality Control dasHbOard) is able to analyse the exported NanoString
nCounter data and facilitates the user in performing a quality
control.  'NACHO' does this by visualising quality control metrics,
expression of control genes, principal components and sample specific
size factors in an interactive web application.
Biobase, covr (>= 3.3.2), GEOquery, limma, roxygen2 (>=
7.0.2), testthat (>= 2.2.1)

NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
<doi:10.1038/nbt1385>). Each barcode is assigned a
messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
target can be counted. As a result each count of a specific barcode
represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString
quality Control dasHbOard) is able to analyse the exported NanoString
nCounter data and facilitates the user in performing a quality
control. 'NACHO' does this by visualising quality control metrics,
expression of control genes, principal components and sample specific
size factors in an interactive web application.