Visually Assessing the Specificity and Informativeness of Primer
Pairs.
ggplot2, grid, XML, ape, httr, lubridate, plyr, scales,
stringr, foreach
'plot.R' 'sequence.R' 'taxonomy.R' 'primerTree.R' 'search.R'

Visually Assessing the Specificity and Informativeness of Primer
Pairs
Identifies potential target sequences for a given set of primers
and generates taxonomically annotated phylogenetic trees with the predicted
amplification products.

Identifies potential target sequences for a given set of primers
and generates phylogenetic trees annotated with the taxonomies of the predicted
amplification products.
ggplot2, grid, XML, ape, httr, lubridate, plyr, scales,
stringr, foreach, reshape2

ggplot2, grid, XML, ape, httr, lubridate, plyr, scales,
stringr, foreach, reshape2, RCurl

c(person(given = "Jim",
family = "Hester",
role = "aut",
email = "james.hester@gmail.com"),
person(given = "Matt",
family = "Cannon",
role = c("aut", "cre"),
email = "matthewvc1@gmail.com"))
Identifies potential target sequences for a given
set of primers and generates phylogenetic trees annotated with the
taxonomies of the predicted amplification products.
ape, foreach, ggplot2, grid, httr, lubridate, plyr, reshape2,
scales, stringr, XML
Jim Hester [aut],
Matt Cannon [aut, cre]

Functions to test whether a number is prime and generate the prime numbers within a specified range. Based around
an implementation of Wilson's theorem for testing for an integer's primality.

c(
person("Os", "Keyes", email = "ironholds@gmail.com", role = c("aut", "cre")),
person("Paul", "Egeler", email = "paulegeler@gmail.com", role = c("aut"))
)
Functions for dealing with prime numbers, such as testing whether a
number is prime and generating a sequence prime numbers.

c(
person("Os", "Keyes", email = "ironholds@gmail.com", role = c("aut", "cre")),
person("Paul", "Egeler", email = "paulegeler@gmail.com", role = c("aut"), comment = c(ORCID = "0000-0001-6948-9498"))
)
Functions for dealing with prime numbers, such as testing whether a
number is prime and generating a sequence prime numbers. Additional functions
include finding prime factors and Ruth-Aaron pairs, finding next and previous
prime numbers in the series, finding or estimating the nth prime, estimating
the number of primes less than or equal to an arbitrary number, computing
primorials, and prime k-tuples (e.g., twin primes).
Os Keyes [aut, cre],
Paul Egeler [aut] (<https://orcid.org/0000-0001-6948-9498>)