(nothing but) an S4 implementation of Eq. (3) and Eq. (7)
by David J. Hand and Robert J. Till (2001). A Simple Generalisation of
the Area Under the ROC Curve for Multiple Class Classification Problems.
Machine Learning, 45 (2), p. 171--186.  DOI:10.1023/A:1010920819831.

person(given = "Andreas Dominik",
family = "Cullmann",
role = c("aut", "cre"),
email = "fvafrcu@mailbox.org")
An S4 implementation of Eq. (3) and Eq. (7) by
David J. Hand and Robert J. Till (2001) <DOI:10.1023/A:1010920819831>.
devtools, knitr, MASS, mda, nnet, pkgload, rmarkdown, rpart,
rprojroot, RUnit, testthat

caTools, devtools, knitr, MASS, mda, nnet, pkgload,
rmarkdown, ROCR, rpart, rprojroot, RUnit, testthat

Univariate non-parametric two-sample test based on empirical
Hankel transforms.
Provides an R routine for a Cramer-von Mises type two sample test which is based on empirical Hankel transforms of the non-negative sample variables. The test is non-parametric and not distribution free. The exact value of the test statistic for univariate data as well as the p-value and the critical value are computed.

Haplotype-Based Analysis of Association for genetic traits

The multi-locus stepwise regression (MSR) combines the advantages of stepwise regression and haplotype-based analysis. The MSR can be used to identify informative combinations of single nucleotide polymorphisms (SNPs) from unlinked SNPs (allele combinations) or SNPs within a chromosomal region (haplotypes).

Inference of Chromosome-Length Haplotypes Using Genomic Data of
Single Gamete Cells
Ruidong Li,
Han Qu,
Jinfeng Chen,
Shibo Wang,
Le Zhang,
Julong Wei,
Sergio Pietro Ferrante,
Mikeal L. Roose,
Zhenyu Jia
Inference of chromosome-length haplotypes using a few haploid
gametes of an individual. The gamete genotype data may be generated from various platforms
including genotyping arrays and sequencing even with low-coverage. Hapi simply takes
genotype data of known hetSNPs in single gamete cells as input and report the high-resolution
haplotypes as well as confidence of each phased hetSNPs. The package also includes a module
allowing downstream analyses and visualization of identified crossovers in the gametes.
SNP, GenomicVariation, Genetics, HiddenMarkovModel,
SingleCell, Sequencing, Microarray