Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass
Spectrometry Data
c(person("Weronika", "Puchala",
email = "puchala.weronika@gmail.com",
role = c("cre", "aut")),
person("Michal", "Burdukiewicz",
email = "michalburdukiewicz@gmail.com",
comment = c(ORCID = "0000-0001-8926-582X"),
role = c("aut")),
person("Dominik", "Rafacz",
email = "d.rafacz@student.mini.pw.edu.pl",
role = c("ctb")))
Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by
Mass Spectrometry experiments (HDX-MS). 'HaDeX' introduces a new standardized and reproducible workflow
for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers
data exploration, quality control and generation of publication-quality figures. All functionalities
are also available in the in-built 'Shiny' app.
data.table, dplyr, DT, ggplot2, gsubfn, latex2exp, reshape2,
readr, readxl, shiny, stringr, tidyr
covr, digest, knitr, pander, rmarkdown, testthat, vdiffr
Weronika Puchala [cre, aut],
Michal Burdukiewicz [aut] (<https://orcid.org/0000-0001-8926-582X>),
Dominik Rafacz [ctb]

c(person("Weronika", "Puchala",
email = "puchala.weronika@gmail.com",
comment = c(ORCID = "0000-0003-2163-1429"),
role = c("cre", "aut")),
person("Michal", "Burdukiewicz",
email = "michalburdukiewicz@gmail.com",
comment = c(ORCID = "0000-0001-8926-582X"),
role = c("aut")),
person("Dominik", "Rafacz",
email = "d.rafacz@student.mini.pw.edu.pl",
role = c("ctb")))
spelling, covr, digest, knitr, pander, rmarkdown,
shinycssloaders, testthat, vdiffr
Weronika Puchala [cre, aut] (<https://orcid.org/0000-0003-2163-1429>),
Michal Burdukiewicz [aut] (<https://orcid.org/0000-0001-8926-582X>),
Dominik Rafacz [ctb]

spelling, covr, digest, knitr, pander, rmarkdown,
shinycssloaders, shinyhelper, testthat, vdiffr

spelling, covr, digest, knitr, pander, renv, rmarkdown,
shinycssloaders, shinyhelper, shinyjs, testthat, vdiffr

c(person("Weronika", "Puchala",
email = "puchala.weronika@gmail.com",
comment = c(ORCID = "0000-0003-2163-1429"),
role = c("cre", "aut")),
person("Michal", "Burdukiewicz",
email = "michalburdukiewicz@gmail.com",
comment = c(ORCID = "0000-0001-8926-582X"),
role = c("aut")),
person("Dominik", "Rafacz",
email = "d.rafacz@student.mini.pw.edu.pl",
comment = c(ORCID = "0000-0003-0925-1909"),
role = c("ctb")))
Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by
Mass Spectrometry experiments (HDX-MS) (10.1093/bioinformatics/btaa587). 'HaDeX' introduces a new
standardized and reproducible workflow for the analysis of the HDX-MS data, including novel
uncertainty intervals. Additionally, it covers data exploration, quality control and generation of
publication-quality figures. All functionalities are also available in the in-built 'Shiny' app.
spelling, covr, digest, gridExtra, knitr, pander, renv,
rmarkdown, shinycssloaders, shinyhelper, shinyjs, testthat,
vdiffr
Weronika Puchala [cre, aut] (<https://orcid.org/0000-0003-2163-1429>),
Michal Burdukiewicz [aut] (<https://orcid.org/0000-0001-8926-582X>),
Dominik Rafacz [ctb] (<https://orcid.org/0000-0003-0925-1909>)