Squared Extrapolation Methods for Accelerating EM-Like Monotone
Algorithms

Algorithms for accelerating the convergence of slow,
monotone sequences from smooth, contraction mapping such as the
EM algorithm. It can be used to accelerate any smooth, linearly
convergent acceleration scheme.  A tutorial style introduction
to this package is available in a vignette on the CRAN download
page or, when the package is loaded in an R session, with
vignette("SQUAREM"). Refer to the J Stat Software article: <doi:10.18637/jss.v092.i07>.

Statistical Ranking Color Scheme for Multiple Pairwise
Comparisons
Implementation of the SRCS method for a color-based visualization of the
results of multiple pairwise tests on a large number of problem configurations, proposed in:
I.G. del Amo, D.A. Pelta. SRCS: a technique for comparing multiple algorithms under several
factors in dynamic optimization problems. In: E. Alba, A. Nakib, P. Siarry
(Eds.), Metaheuristics for Dynamic Optimization. Series: Studies in
Computational Intelligence 433, Springer, Berlin/Heidelberg, 2012.

parallel, graphics, stats, grDevices, methods

SRMA Analysis of Array-based Sequencing Data
Wenyi Wang <wwang7@mdanderson.org>, Nianxiang Zhang
<nzhang@mdanderson.org>, Yan Xu
R (>= 2.12.0),R.utils,R.filesets,nlme,
aroma.core,aroma.affymetrix, splines, MASS, methods, mclust,
mnormt, ellipse
SRMA is an R package for sequence base calling using
Affymetrix custom resequencing arrays. It includes R
implementations of the Sequencing Robust Multi-array Analysis
methods that were developed to accurately identify all single
nucleotide variants in candidate gene sequences.

A package development and management system for distributed reproducible research

A package development and management system for
distributed reproducible research

The Stepwise Response Refinement Screener (SRRS)
Frederick Kin Hing Phoa and Shu-Ching Lin
Frederick Kin Hing Phoa <fredphoa@stat.sinica.edu.tw>
This package implements the SRRS method introduced in Phoa (2013) into a graphical user interface (GUI) R program.