Plots measures of pairwise linkage disequilibria for SNPs
Ji-Hyung Shin <jshinb@sfu.ca>, Sigal Blay <sblay@sfu.ca>, Jinko Graham <jgraham@stat.sfu.ca>, Brad McNeney <mcneney@stat.sfu.ca>
Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.

A graphical tool for exploring pairwise linkage disequilibria between Single Nucleotide Polymorphisms (SNPs)

This package produces a pairwise LD plot
Jinko Graham <jgraham@cs.sfu.ca>, Ji-hyung Shin <jshinb@sfu.ca>, Sigal Blay <sblay@sfu.ca>
Produces a graphical display, as a heat map, of linkage disequilibrium measures.

Graphical display of pairwise linkage disequilibria between SNPs
Ji-Hyung Shin <jshinb@sfu.ca>, Sigal Blay <sblay@sfu.ca>, Nicholas Lewin-Koh <nikko@hailmail.net>, Jinko Graham <jgraham@stat.sfu.ca>, Brad McNeney <mcneney@stat.sfu.ca>

Ji-Hyung Shin <shin@sfu.ca>, Sigal Blay <sblay@sfu.ca>, Nicholas Lewin-Koh <nikko@hailmail.net>, Brad McNeney <mcneney@stat.sfu.ca>, Jinko Graham <jgraham@stat.sfu.ca>

Ji-Hyung Shin <shin@sfu.ca>, Sigal Blay <sblay@sfu.ca>,
Nicholas Lewin-Koh <nikko@hailmail.net>, Brad McNeney
<mcneney@stat.sfu.ca>, Jinko Graham <jgraham@stat.sfu.ca>
Produces a graphical display, as a heat map, of measures
of pairwise linkage disequilibria between SNPs. Users may
optionally include the physical locations or genetic map
distances of each SNP on the plot.

Ji-Hyung Shin <shin@sfu.ca>, Sigal Blay <sblay@sfu.ca>,
Nicholas Lewin-Koh <nikko@hailmail.net>, Brad McNeney
<mcneney@sfu.ca>, Jinko Graham <jgraham@sfu.ca>
rtracklayer, GenomicRanges, chopsticks (>= 1.18.0), lattice

rtracklayer, GenomicRanges, chopsticks (>= 1.18.0), lattice,
ggplot2

Graphical Display of Pairwise Linkage Disequilibria Between SNPs
rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice,
ggplot2

c(person("Ji-Hyung","Shin",email="shin@sfu.ca", role="aut"),
person("Sigal","Blay", email="sblay@sfu.ca",role="aut"),
person("Nicholas","Lewin-Koh",email="nikko@hailmail.net", role="ctb"),
person("Brad","McNeney",email="mcneney@sfu.ca",role=c("aut","cre")),
person("Gloria","Yang",email="xuefei_yang@sfu.ca",role="ctb"),
person("Matthew","Reyers",email="matthew_reyers@sfu.ca",role="ctb"),
person("Jinko","Graham",email="jgraham@sfu.ca",role="aut"))
Ji-Hyung Shin [aut],
Sigal Blay [aut],
Nicholas Lewin-Koh [ctb],
Brad McNeney [aut, cre],
Gloria Yang [ctb],
Matthew Reyers [ctb],
Jinko Graham [aut]