Chris Groendyke <cgroendyke@gmail.com>,
David Welch <David Welch <david.welch@auckland.ac.nz>,
David R. Hunter <dhunter@stat.psu.edu>,
A collection of epidemic/network-related tools. Simulates transmission of diseases through contact networks. Performs Bayesian inference on network and epidemic parameters, given epidemic data.

A Collection of Epidemic/Network-Related Tools
c(person("Chris", "Groendyke", role = c("aut", "cre"), email = "cgroendyke@gmail.com"),
person("David", "Welch", role = "aut", email = "david.welch@auckland.ac.nz"),
person("David", "Hunter", role = "ctb", email = "dhunter@stat.psu.edu"))
Chris Groendyke [aut, cre],
David Welch [aut],
David Hunter [ctb]

Epistatic Network Modelling with Forward-Time Simulation
c(
person("Dion", "Detterer", email = "ddettere@myune.edu.au", role = c("aut", "cre")),
person("Paul", "Kwan", email = "pkwan@mit.edu.au", role = "aut"),
person("Cedric", "Gondro", email = "gondroce@msu.edu", role = "aut"))
Allows for forward-in-time simulation of epistatic networks with associated
phenotypic output.
Dion Detterer [aut, cre],
Paul Kwan [aut],
Cedric Gondro [aut]

c(
person("Christophe", "Gigot", email = "ch.gigot@gmail.com",
role = c("aut", "cre"), comment = c(ORCID = "0000-0002-1748-2902")))
A toolbox to make it easy to analyze plant disease epidemics. It
provides a common framework for plant disease intensity data recorded over
time and/or space. Implemented statistical methods are currently mainly
focused on spatial pattern analysis (e.g., aggregation indices, Taylor and
binary power laws, distribution fitting, SADIE and mapcomp methods). See
Madden LV, Hughes G, van den Bosch F (2007, ISBN: 978-089054-354-2) for
further information on these methods. Several data sets that were mainly
published in plant disease epidemiology literature are also included in this
package.
stats, methods, utils, grDevices, ggplot2, transport, msm,
pbapply, Rcpp
magrittr, dplyr, tidyr, spdep, emdist, vegan, MASS, emdbook,
knitr, rmarkdown
'RcppExports.R' 'betabinom.R' 'data.R' 'utils.R'
'mle-factory.R' 'epiphy.R' 'intensity-classes.R'
'distr-fitting.R' 'indices.R' 'mapcomp.R' 'power-law.R'
'sadie.R' 'spatial-hier.R'
Christophe Gigot [aut, cre] (<https://orcid.org/0000-0002-1748-2902>)