RAMClust: A Novel Feature Clustering Method Enables
Spectral-Matching Based Annotation for Metabolomics Data
Corey D. Broeckling, Fayyaz Afsar, Steffan Neumann, Asa Ben-Hur,  Jessica Prenni.
dynamicTreeCut, fastcluster, ff, InterpretMSSpectrum,
BiocManager, httr, jsonlite, preprocessCore, xcms, e1071,
gplots, pcaMethods, stringr, xml2
A feature clustering algorithm for non-targeted mass spectrometric metabolomics data. This method is compatible with GC-MS, LC-MS, and LC-MS data using indiscriminant MS/MS (MSe, MSall, etc) data.

Mass Spectrometry Metabolomics Feature Clustering and
Interpretation
dynamicTreeCut, fastcluster, ff, InterpretMSSpectrum,
BiocManager, httr, jsonlite, preprocessCore, xcms, e1071,
gplots, pcaMethods, stringr, xml2, utils, webchem, stringi
A feature clustering algorithm for non-targeted mass spectrometric metabolomics data. This method is compatible with gas and liquid chromatography coupled mass spectrometry, including indiscriminant tandem mass spectromery <DOI: 10.1021/ac501530d> data.

dynamicTreeCut, fastcluster, ff, InterpretMSSpectrum,
BiocManager, httr, jsonlite, preprocessCore, xcms, e1071,
gplots, pcaMethods, stringr, xml2, utils, webchem, stringi,
RCurl

A feature clustering algorithm for non-targeted mass spectrometric metabolomics data. This method is compatible with gas and liquid chromatography coupled mass spectrometry, including indiscriminant tandem mass spectrometry <DOI: 10.1021/ac501530d> data.

dynamicTreeCut, fastcluster, ff, InterpretMSSpectrum,
BiocManager, httr, jsonlite, preprocessCore, e1071, gplots,
pcaMethods, stringr, xml2, utils, webchem, stringi, RCurl

dynamicTreeCut, fastcluster, ff, InterpretMSSpectrum,
BiocManager, httr, jsonlite, preprocessCore, e1071, gplots,
pcaMethods, stringr, xml2, utils, webchem, stringi, RCurl,
MSnbase, ggplot2

dynamicTreeCut, fastcluster, ff, InterpretMSSpectrum,
BiocManager, httr, jsonlite, preprocessCore, e1071, gplots,
pcaMethods, stringr, xml2, utils, webchem, stringi, RCurl,
ggplot2, readxl
knitr, rmarkdown, xcms, testthat, MSnbase