tidyverse, dplyr, XML, magrittr, ggplot2, stringr, ggtree,
ape, patchwork, ggseqlogo, memes, universalmotif, treeio,
cowplot, ggsci

tidyverse, dplyr, XML, magrittr, ggplot2, stringr, ggtree,
ape, patchwork, ggseqlogo, memes, universalmotif, treeio,
cowplot, ggsci, data.table

Implements the generalized Gauss Markov regression, this is useful when both predictor and response have uncertainty attached to them and also when covariance within the predictor, within the response and between the predictor and the response is present. Base on the results published in guide ISO/TS 28037 (2010) <https://www.iso.org/standard/44473.html>.

Plot Multiple Sequence Alignment using 'ggplot2'
c( person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-6485-8781")),
person("Lang", "Zhou",      email = "nyzhoulang@gmail.com",    role = "aut"),
person("Huina", "Huang",    email = "1185796994@qq.com",       role = "ctb"))
Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.
ggplot2, ggseqlogo, magrittr, tidyr, treeio, utils
Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>),
Lang Zhou [aut],
Huina Huang [ctb]

Biostrings, ggplot2, ggseqlogo, magrittr, tidyr, treeio, utils
ape, cowplot, ggtree, knitr, methods, prettydoc, rmarkdown,
seqmagick

Biostrings, ggplot2, magrittr, tidyr, utils, stats, stringr
ape, cowplot, ggtree, knitr, methods, seqmagick

Biostrings, ggplot2, magrittr, tidyr, utils, stats, stringr,
aplot, RColorBrewer
ape, cowplot, ggtree (>= 1.17.1), knitr, methods, prettydoc,
rmarkdown, seqmagick,

c( person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-6485-8781")),
person("Lang", "Zhou",      email = "nyzhoulang@gmail.com",    role = "aut"),
person("Shuangbin", "Xu",   email = "xshuangbin@163.com",    role = "ctb"),
person("Huina", "Huang",    email = "1185796994@qq.com",       role = "ctb"))
Biostrings, ggplot2, magrittr, tidyr, utils, stats, stringr,
aplot, RColorBrewer, ggalt, ggforce, methods, dplyr, R4RNA
ggtreeExtra, ggtree (>= 1.17.1), ape, cowplot, knitr,
prettydoc, rmarkdown, seqmagick, readxl, ggnewscale,
kableExtra, gggenes
Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>),
Lang Zhou [aut],
Shuangbin Xu [ctb],
Huina Huang [ctb]