Reconstruct Perfect Phylogenies from DNA Sequence Data
Reconstructs perfect phylogeny at a user-given focal point and to depict and test association in a genomic region based on the reconstructed partitions. Charith B Karunarathna and Jinko Graham (2019) <bioarXiv:10.1101/674523>.
ape, HHG , dendextend, phytools, Rcpp (>= 0.12.16)

Reconstructs perfect phylogeny at a user-given focal point and to depict and test association in a genomic region based on the reconstructed partitions. Charith B Karunarathna and Jinko Graham (2019) <bioRxiv:10.1101/674523>.

Assessment of Regression Models Performance
c(
person("Daniel",
"Lüdecke",
role = c("aut", "cre"),
email = "d.luedecke@uke.de",
comment = c(ORCID = "0000-0002-8895-3206")),
person("Dominique",
"Makowski",
email = "dom.makowski@gmail.com",
role = c("aut", "ctb"),
comment = c(ORCID = "0000-0001-5375-9967"))
)
Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages. These
include e.g. measures like r-squared, intraclass correlation coefficient
(Nakagawa, Johnson & Schielzeth (2017) <doi:10.1098/rsif.2017.0213>),
root mean squared error or functions to check models for overdispersion,
singularity or zero-inflation and more. Functions apply to a large variety of
regression models, including generalized linear models, mixed effects models
and Bayesian models.
brms, covr, graphics, glmmTMB, ggplot2, lme4, loo, Matrix,
MASS, mlogit, nlme, psych, rmarkdown, rstanarm, rstantools,
scales, testthat

c(person(given = "Daniel",
family = "Lüdecke",
role = c("aut", "cre"),
email = "d.luedecke@uke.de",
comment = c(ORCID = "0000-0002-8895-3206", Twitter = "@strengejacke")),
person(given = "Dominique",
family = "Makowski",
role = c("aut", "ctb"),
email = "dom.makowski@gmail.com",
comment = c(ORCID = "0000-0001-5375-9967", Twitter = "@Dom_Makowski")),
person(given = "Mattan S.",
family = "Ben-Shachar",
role = c("aut", "ctb"),
email = "matanshm@post.bgu.ac.il",
comment = c(ORCID = "0000-0002-4287-4801", Twitter = "@mattansb")),
person(given = "Indrajeet",
family = "Patil",
role = c("aut", "ctb"),
email = "patilindrajeet.science@gmail.com",
comment = c(ORCID = "0000-0003-1995-6531", Twitter = "@patilindrajeets")),
person(given = "Philip",
family = "Waggoner",
role = c("aut", "ctb"),
email = "philip.waggoner@gmail.com",
comment = c(ORCID = "0000-0002-7825-7573")),
person(given = "Brenton M.",
family = "Wiernik",
role = c("aut", "ctb"),
email = "brenton@wiernik.org",
comment = c(ORCID = "0000-0001-9560-6336", Twitter = "@bmwiernik")),
person(given = "Vincent",
family = "Arel-Bundock",
email = "vincent.arel-bundock@umontreal.ca",
role = "ctb",
comment = c(ORCID = "0000-0003-2042-7063")),
person(given = "Rémi",
family = "Thériault",
role = "ctb",
email = "remi.theriault@mail.mcgill.ca",
comment = c(ORCID = "0000-0003-4315-6788", Twitter = "@rempsyc")),
person(given = "Martin",
family = "Jullum",
role = "rev"),
person(given = "gjo11",
role = "rev"))
Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models.
bayestestR (>= 0.12.0), insight (>= 0.18.3), datawizard (>=
0.5.1), methods, stats, utils
AER, afex, BayesFactor, bayesplot, betareg, bigutilsr,
blavaan, brms, car, CompQuadForm, correlation, cplm, dbscan,
estimatr, fixest, forecast, gamm4, ggplot2, glmmTMB, httr, ICS,
ICSOutlier, ISLR, lavaan, lme4, lmtest, loo, magrittr, MASS,
Matrix, mclust, metafor, mgcv, mlogit, multimode, nlme,
nonnest2, ordinal, parallel, parameters, patchwork, poorman,
pscl, psych, randomForest, rmarkdown, rstanarm, rstantools,
sandwich, see, survey, survival, testthat, tweedie, VGAM
Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Mattan S. Ben-Shachar [aut, ctb]
(<https://orcid.org/0000-0002-4287-4801>, @mattansb),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Brenton M. Wiernik [aut, ctb] (<https://orcid.org/0000-0001-9560-6336>,
@bmwiernik),
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>),
Rémi Thériault [ctb] (<https://orcid.org/0000-0003-4315-6788>,
@rempsyc),
Martin Jullum [rev],
gjo11 [rev]