Regularized Wasserstein Distances and Barycenters
Computations of Sinkhorn Distances (upper bounds to the Wasserstein Distance a.k.a. Earth Mover's Distance) and Wasserstein Barycenters. Relevant papers are Marco Cuturi (2013) <arXiv:1306.0895> and Marco Cuturi (2014) <arXiv:1310.4375>. To speed up the computation time the main iteration steps are based on 'RcppArmadillo'.

Computations of entropy regularized Wasserstein Distances, a.k.a. dual-Sinkhorn divergences, and entropy regularized Wasserstein Barycenters. Relevant papers are Marco Cuturi (2013) <arXiv:1306.0895>, Marco Cuturi (2014) <arXiv:1310.4375> and Jason Altschuler et al. <arXiv:1705.09634>.

Computations of Sinkhorn Distances (upper bounds to the Wasserstein Distance a.k.a. Earth Mover's Distance) and regularized Wasserstein Barycenters. Relevant papers are Marco Cuturi (2013) <arXiv:1306.0895>, Marco Cuturi (2014) <arXiv:1310.4375> and Jason Altschuler et al. <arXiv:1705.09634>. To speed up the computation time the main iteration steps are based on 'RcppArmadillo'.

c(person(given = "Lluís",
family = "Revilla Sancho",
role = c("aut", "cre"),
email = "lluis.revilla@gmail.com",
comment = c(ORCID = "0000-0001-9747-2570")),
person(given = "Zebulun",
family = "Arendsee",
role = "rev"),
person(given = "Jennifer Chang",
role = "rev"))
Implements a class and methods to work with sets,
doing intersection, union, complementary sets, power sets, cartesian
product and other set operations in a "tidy" way. These set operations
are available for both classical sets and fuzzy sets. Import sets from
several formats or from other several data structures.
dplyr (>= 1.0.0), magrittr, methods, rlang, utils
Biobase, covr, forcats, ggplot2, GO.db, GSEABase, knitr,
org.Hs.eg.db, reactome.db, rmarkdown, spelling, testthat (>=
2.1.0), utf8 (>= 1.1.4)
'AllClasses.R' 'AllGenerics.R' 'GMT.R' 'GeneSetCollection.R'
'activate.R' 'add.R' 'add_column.R' 'add_relation.R'
'adjacency.R' 'arrange.R' 'basesets-package.R' 'cardinality.R'
'cartesian.R' 'complement.R' 'data_frame.R' 'deactivate.R'
'droplevels.R' 'elements.R' 'filter.R' 'group.R' 'group_by.R'
'head.R' 'incidence.R' 'independent.R' 'operations.R'
'intersection.R' 'length.R' 'list.R' 'move_to.R' 'mutate.R'
'names.R' 'naming.R' 'nested.R' 'obo.R' 'power_set.R' 'print.R'
'pull.R' 'relations.R' 'remove.R' 'remove_column.R' 'rename.R'
'select.R' 'set.R' 'size.R' 'subtract.R' 'tidy-set.R' 'union.R'
'utils-pipe.R' 'zzz.R'
Lluís Revilla Sancho [aut, cre]
(<https://orcid.org/0000-0001-9747-2570>),
Zebulun Arendsee [rev],
Jennifer Chang [rev]