The spatial interpolation of genetic distances between
samples is based on a modified kriging method that
accepts a genetic distance matrix and generates a map of
probability of lineage presence. This package also offers
tools to generate a map of  potential contact zones
between groups with user-defined thresholds in the tree
to account for old and recent divergence. Additionally,
it has functions for IDW interpolation using genetic data
and midpoints.

Phylogenetic Tree Topological Properties Evaluator
Calculates some topological properties of phylogenetic trees
grid, graphics, grDevices, stats, utils, ape, phylobase,
datasets, methods (>= 2.15.2)

Calculating Topological Properties of Phylogenies
c(MK=person("Michelle", "Kendall", email="m.kendall@imperial.ac.uk", role = c("aut", "cre")),
MB=person("Michael", "Boyd", email="mboyd855@gmail.com", role = c("aut")),
CC=person("Caroline", "Colijn", role = c("aut")))
Tools for calculating and viewing topological properties of phylogenetic trees.
Michelle Kendall [aut, cre],
Michael Boyd [aut],
Caroline Colijn [aut]

c(MK=person("Michelle", "Kendall", email="michelle.kendall@bdi.ox.ac.uk", role = c("aut", "cre")),
MB=person("Michael", "Boyd", email="mboyd855@gmail.com", role = c("aut")),
CC=person("Caroline", "Colijn", role = c("aut")))

Kurt Sys, LabMET - Laboratory of Microbial Ecology and
Technology, RUG
Software to process data from phylogenetic or identification microarrays. At present state, it is rather limited and focuss was on a fast and easy way for calculating background values by interpolation and plotting melting curves. The functions for reading the data are similar to those used in package 'sma' (statistical microarray analysis).

Base package for phylogenetic structures and comparative data
R Hackathon et al. (alphabetically: Ben Bolker, Marguerite
Butler, Peter Cowan, Damien de Vienne, Thibaut Jombart, Steve
Kembel, Francois Michonneau, David Orme, Brian O'Meara,
Emmanuel Paradis, Jim Regetz, Derrick Zwickl)
Provides a base S4 class for comparative methods,
incorporating one or more trees and trait data
phylo4.R checkdata.R formatData.R class-multiphylo4.R
class-oldclasses.R class-phylo4.R class-phylo4d.R
class-phylomats.R methods-multiphylo4.R methods-oldclasses.R
methods-phylo4.R methods-phylo4d.R setAs-Methods.R pdata.R
subset.R prune.R treePlot.R treestruc.R treewalk.R readNexus.R
tbind.R zzz.R