Spatial utility functions from the Dyer laboratory
This package contains classes and functions for the
spatial analysis of marker data to include structure
statistics, analyses based upon allele frequencies, and
Population Graphs network analysis of spatial conditional
genetic covariance.  This package supersedes the original
studio package by interfacing with raster and sp objects
directly.
'alleles.R' 'as_data_frame.R' 'column_class.R' 'dest.R'
'dist_amova.R' 'dist_cavalli.R' 'dist_jaccard.R' 'dist_nei.R'
'genetic_distance.R' 'genetic_structure.R' 'gst_prime.R'
'gst.R' 'gstudio-package.R' 'he.R' 'ho.R' 'indices.R'
'is_heterozygote.R' 'is_na.R' 'locus.R' 'partition.R'
'pies_on_map.R' 'ploidy.R' 'plot_surface_and_points.R' 'plot.R'
'population_map.R' 'print.R' 'read_population.R'
'strata_coordinates.R' 'frequencies.R' 'is_frequency.R' 'fis.R'
'plot_frequencies.R' 'to_mv.R' 'rarefaction.R' 'permute_ci.R'
'A.R' 'Ae.R' 'dist_cgd.R' 'dist_bray.R' 'dist_euclidean.R'
'genetic_diversity.R' 'transition_probability.R'
'allelic_diversity.R' 'minus_mom.R' 'paternity.R'
'exclusion_probability.R' 'mate.R' 'make_population.R'

Analyses and functions related to the spatial analysis of
genetic marker data.
This package contains classes and functions for
the spatial analysis of marker data to include structure
statistics, analyses based upon allele frequencies, and
other methods for the manipulation and analysis of marker
data.
sp, raster, grid, reshape2, ggplot2, ggmap, popgraph

This package contains classes and functions for
the spatial analysis of marker data to include structure
statistics, analyses based upon allele frequencies.

Like gsub but with replacement function instead of string

Miscellaneous utilities for strings and function arguments.
gsubfn is like gsub but can take a replacement function
rather than a replacement string.  Matches and backreferences
are input to the function and replaced by the function output.
gsubfn can be used to split strings based on content rather than
delimiters and for quasi-perl-style string interpolation. The
package also has facilities for translating formulas to functions
and allowing such formulas in function calls instead of functions.
This can reduce code size when using apply, lapply, optim, integrate,
xyplot and any other function that expects another function as input.