Performs adaptive shrinkage of correlation and covariance
matrices using a mixture model prior over the Fisher z-transformation of the
correlations. It allows separate shrinkage intensity for each cell of the
correlation matrix. Can also we flexibly  extended to shrinking correlation like
quantities such as cosine similarities in word2vec models and to partial
correlations in conditional graph estimation. For details on methods, refer
to Stephens (2017) "False discovery rates: a new deal",
<DOI:10.1093/biostatistics/kxw041>.
ashr, glmnet, SQUAREM, reshape2, methods, Matrix, gridExtra,
corrplot, corpcor, MASS

Adaptive Shrinkage of Correlation Vectors and Matrices
person("Kushal", "Dey", email = "kkdey@uchicago.edu", role =
c("aut","cre"),
"Matthew", "Stephens", email = "mstephens@uchicago.edu", role = "aut")
Performs adaptive shrinkage of correlation and covariance matrices
using a mixture model prior over the Fisher z-transformation of the correlations,
Stephens (2016) <doi:10.1093/biostatistics/kxw041> with the method flexible in choosing
a separate shrinkage intensity for each cell of the correlation or covariance
matrices: it is particularly efficient in handling missing data in the data matrix.
knitr, BiocStyle, corpcor, glasso, Biobase, roxygen2,
RColorBrewer, devtools, xtable

Collection of Rudimentary Bioinformatics Tools
Provides a bundle of basic and fundamental bioinformatics tools,
such as network querying and alignment.
c(person("Ling-Yun", "Wu", role = c("aut", "cre"), email =
"wulingyun@gmail.com"), person("Qiang", "Huang", role = c("aut"), email =
"hq04405114@gmail.com"))
Ling-Yun Wu [aut, cre],
Qiang Huang [aut]

Provides a bundle of basic and fundamental bioinformatics tools,
such as network querying and alignment, subnetwork extraction and search.

Provides a bundle of basic and fundamental bioinformatics tools,
such as network querying and alignment, subnetwork extraction and search,
network biomarker identification.
c(person("Ling-Yun", "Wu", role = c("aut", "cre"), email =
"wulingyun@gmail.com"), person("Qiang", "Huang", role = c("aut"), email =
"hq04405114@gmail.com"), person("Duanchen", "Sun", role = c("aut"), email =
"dcsun@amss.ac.cn"))
Ling-Yun Wu [aut, cre],
Qiang Huang [aut],
Duanchen Sun [aut]