Analysis, visualisation and simulation of digital polymerase chain
reaction (dPCR). Supports data formats of commerical systems (Bio-Rad QX100 and
QX200; Fluidigm BioMark) and other systems.
binom, chipPCR, e1071, evd, dgof, multcomp, qpcR, pracma,
rateratio.test, readxl, signal, shiny, spatstat
digest, DT, ggplot2, knitr, markdown, rhandsontable,
rmarkdown, shinythemes, xtable
'AUCtest.R' 'BioradCNV.R' 'White.R' 'adpcr2panel.R'
'adpcr2ppp.R' 'binarize.R' 'classes.R' 'bind_dpcr.R' 'bioamp.R'
'calc_breaks.R' 'calc_coordinates.R' 'calc_lambda.R'
'compare_dens.R' 'count_test-class.R' 'create_dpcr.R'
'dPCRmethyl.R' 'ddpcRquant.R' 'df2dpcr.R' 'dpcR-package.R'
'dpcReport_gui.R' 'dpcr2df.R' 'dpcr_calculator.R'
'dpcr_density.R' 'dpcr_density_gui.R' 'dpcr_density_table.R'
'extract_run.R' 'fit_adpcr.R' 'fl.R' 'get_k_n.R' 'hsm.R'
'limit_cq.R' 'many_peaks.R' 'modlist.R' 'moments.R' 'num2int.R'
'pds.R' 'pds_raw.R' 'plot_distr.R' 'plot_panel.R'
'plot_vf_circ.R' 'plot_vic_fam.R' 'print_summary.R' 'qdpcr.R'
'qpcr2pp.R' 'qpcr_analyser.R' 'read_amp.R' 'read_dpcr.R'
'rename_dpcr.R' 'rtadpcr.R' 'safe_efficiency.R' 'show_dpcr.R'
'sim_adpcr.R' 'sim_ddpcr_bkm.R' 'sim_dpcr.R' 'simulations.R'
'six_panels.R' 'summary_dpcr.R' 'test_counts.R'
'test_counts_gui.R' 'test_panel.R' 'test_peaks.R'
'test_pooled.R' 'valid_amp.R' 'y_val_conf.R'

c(
person("Michal", "Burdukiewicz", email = "michalburdukiewicz@gmail.com",
role = c("cre", "aut"), comment = c(ORCID = "0000-0001-8926-582X")),
person("Stefan", "Roediger", email = "stefan.roedigier@b-tu.de", role = "aut",
comment = c(ORCID = "0000-0002-1441-6512")),
person("Bart", "Jacobs", email = "BartKM.Jacobs@ugent.be", role = "aut"),
person("Piotr", "Sobczyk", email = "pj.sobczyk@gmail.com", role = "ctb"),
person("Andrej-Nikolai", "Spiess", email = "draspiess@gmail.com", role = "ctb"))
Analysis, visualisation and simulation of digital polymerase chain
reaction (dPCR) (Burdukiewicz et al. (2016) <doi:10.1016/j.bdq.2016.06.004>).
Supports data formats of commercial systems (Bio-Rad QX100 and
QX200; Fluidigm BioMark) and other systems.
Michal Burdukiewicz [cre, aut]
(<https://orcid.org/0000-0001-8926-582X>),
Stefan Roediger [aut] (<https://orcid.org/0000-0002-1441-6512>),
Bart Jacobs [aut],
Piotr Sobczyk [ctb],
Andrej-Nikolai Spiess [ctb]