Kriging Models using the 'libKriging' Library
c(person(given = "Pascal",
family = "Havé",
role = c("aut"),
email = "hpwxf@haveneer.com"),
person(given = "Yann",
family = "Richet",
role = c("aut","cre"),
email = "yann.richet@irsn.fr",
comment = c(ORCID = "0000-0002-5677-8458")),
person(given = "Yves",
family = "Deville",
role = c("aut"),
email = "deville.yves@alpestat.com"),
person(given = "Conrad",
family = "Sanderson",
role = c("ctb"),
email = "conradsand.uq@gmail.com"),
person(given = "Colin",
family = "Fang",
role = c("ctb")),
person(given = "Ciyou",
family = "Zhu",
role = c("ctb")),
person(given = "Richard",
family = "Byrd",
role = c("ctb")),
person(given = "Jorge",
family = "Nocedal",
role = c("ctb")),
person(given = "Jose Luis",
family = "Morales",
role = c("ctb"))
)
Interface to 'libKriging' 'C++' library <https://github.com/libKriging> that should
provide most standard Kriging / Gaussian process regression features
(like in 'DiceKriging', 'kergp' or 'RobustGaSP' packages).
'libKriging' relies on Armadillo linear algebra library (Apache 2 license) by Conrad Sanderson,
and 'lbfgsb_cpp' is a 'C++' wrapper by Colin Fang around 'lbfgsb' library (BSD-3 license) by
Ciyou Zhu, Richard Byrd, Jorge Nocedal and Jose Luis Morales used for hyperparameters optimization.
testthat, RobustGaSP, utils, DiceDesign, foreach
GNU make, cmake (>= 3.2.0), gcc, gfortran
Pascal Havé [aut],
Yann Richet [aut, cre] (<https://orcid.org/0000-0002-5677-8458>),
Yves Deville [aut],
Conrad Sanderson [ctb],
Colin Fang [ctb],
Ciyou Zhu [ctb],
Richard Byrd [ctb],
Jorge Nocedal [ctb],
Jose Luis Morales [ctb]

Linked Inference of Genomic Experimental Relationships
Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.
c(
person(given = 'Joshua', family = 'Welch', email = 'welchjd@umich.edu', role = c('aut', 'ctb')),
person(given = 'Chao', family = 'Gao', email = 'gchao@umich.edu', role = c('aut', 'ctb', 'cre')),
person(given = 'Jialin', family = 'Liu', email = 'alanliu@umich.edu', role = c('aut', 'ctb')),
person(given = 'Joshua', family = 'Sodicoff', email = 'sodicoff@umich.edu', role = c('aut', 'ctb')),
person(given = 'Velina', family = 'Kozareva', role = c('aut', 'ctb')),
person(given = 'Evan', family = 'Macosko', role = c('aut', 'ctb')),
person(given = 'Paul', family = 'Hoffman', role = 'ctb'),
person(given = 'Ilya', family = 'Korsunsky', role = 'ctb'),
person(given = 'Robert', family = 'Lee', role = 'ctb')
)
Joshua Welch [aut, ctb],
Chao Gao [aut, ctb, cre],
Jialin Liu [aut, ctb],
Joshua Sodicoff [aut, ctb],
Velina Kozareva [aut, ctb],
Evan Macosko [aut, ctb],
Paul Hoffman [ctb],
Ilya Korsunsky [ctb],
Robert Lee [ctb]
Rcpp (>= 0.12.10), plyr, FNN, dplyr, grid, ggrepel, irlba,
ica, Rtsne, ggplot2, riverplot, Hmisc, foreach, parallel,
doParallel, mclust, stats, psych, RANN, uwot, rlang, utils,
hdf5r
Seurat, knitr, reticulate, rmarkdown, testthat,
GenomicRanges, S4Vectors, IRanges, org.Hs.eg.db, reactome.db,
fgsea, AnnotationDbi