Jeff Laake <jeff.laake@noaa.gov> with code contributions from Eldar
Rakhimberdiev, Ben Augustine and Daniel Turek, and example data and
analysis from Bret Collier, Jay Rotella, David Pavlacky,Andrew Paul and Luke Eberhart-Phillips.

notepad.exe, mark.exe (>= 6.2) (or mark32.exe and
mark64.exe) and rel_32.exe (see README.txt)
'add.design.data.R' 'adjust.chat.R' 'adjust.parameter.count.R'
'cleanup.R' 'collect.model.names.R' 'collect.models.R'
'compute.design.data.R' 'compute.link.R'
'compute.links.from.reals.R' 'compute.real.R' 'convert.inp.r'
'convert.link.to.real.r' 'covariate.predictions.r'
'create.model.list.R' 'deltamethod.r' 'deriv.inverse.link.R'
'export.chdata.R' 'export.MARK.r' 'export.model.r'
'extract.mark.output.R' 'fill.covariates.R' 'find.covariates.R'
'get.link.R' 'get.real.R' 'import.chdata.R' 'inverse.link.R'
'make.design.data.R' 'make.mark.model.R' 'make.time.factor.r'
'mark.R' 'mark.wrapper.R' 'mark.wrapper.parallel.r'
'merge.design.covariates.r' 'merge.mark.r'
'model.average.default.r' 'model.average.list.r'
'model.average.marklist.R' 'model.average.R' 'model.table.R'
'PIMS.R' 'popan.r' 'print.mark.R' 'print.summary.mark.R'
'process.data.R' 'read.mark.binary.linux.R'
'read.mark.binary.R' 'release.gof.R' 'remove.mark.r'
'rerun.mark.R' 'run.mark.model.R' 'run.models.R'
'setup.model.R' 'setup.parameters.R' 'store.r' 'summary.ch.r'
'summary.mark.R' 'TransitionMatrix.R' 'utility.r'
'valid.parameters.R' 'var.components.R' 'var.components.reml.r'
'zzz.R' 'RMark-package.R' 'create.mark.mcmc.R' 'splitCH.r'

Jeff Laake <jeff.laake@noaa.gov> with code contributions from
Eldar Rakhimberdiev and Ben Augustine, and example data and
analysis from Bret Collier, Jay Rotella and Andrew Paul
R (>= 2.13.0), plotrix, snowfall, coda, msm, nlme, matrixcalc

Jeff Laake <jeff.laake@noaa.gov> with code contributions from
Eldar Rakhimberdiev, Ben Augustine and Daniel Turek, and
example data and analysis from Bret Collier, Jay Rotella and
Andrew Paul.
R (>= 2.13.0), plotrix, coda, msm, nlme, matrixcalc, snowfall
'add.design.data.R' 'adjust.chat.R' 'adjust.parameter.count.R'
'cleanup.R' 'collect.model.names.R' 'collect.models.R'
'compute.design.data.R' 'compute.link.R'
'compute.links.from.reals.R' 'compute.real.R' 'convert.inp.r'
'convert.link.to.real.r' 'covariate.predictions.r'
'create.model.list.R' 'deltamethod.r' 'deriv.inverse.link.R'
'export.chdata.R' 'export.MARK.r' 'export.model.r'
'extract.mark.output.R' 'fill.covariates.R' 'find.covariates.R'
'get.link.R' 'get.real.R' 'import.chdata.R' 'inverse.link.R'
'make.design.data.R' 'make.mark.model.R' 'make.time.factor.r'
'mark.R' 'mark.wrapper.R' 'mark.wrapper.parallel.r'
'merge.design.covariates.r' 'merge.mark.r'
'model.average.default.r' 'model.average.list.r'
'model.average.marklist.R' 'model.average.R' 'model.table.R'
'PIMS.R' 'popan.r' 'print.mark.R' 'print.summary.mark.R'
'process.data.R' 'read.mark.binary.linux.R'
'read.mark.binary.R' 'release.gof.R' 'remove.mark.r'
'rerun.mark.R' 'run.mark.model.R' 'run.models.R'
'setup.model.R' 'setup.parameters.R' 'store.r' 'summary.ch.r'
'summary.mark.R' 'TransitionMatrix.R' 'utility.r'
'valid.parameters.R' 'var.components.R' 'var.components.reml.r'
'zzz.R' 'RMark-package.R' 'create.mark.mcmc.R' 'splitCH.r'
'mata.wald.r'