Functions for phylogenetically-based statistical analyses.
Ramón Díaz-Uriarte <ramon-diaz@teleline.es> and Theodore Garland, Jr <tgarland@facstaff.wisc.edu>.
Manipulation and analysis of phylogenetically simulated data sets (as
obtained from PDSIMUL in PDAP package) and phylogenetically-based analyses
using GLS.

Functions for phylogenetically based statistical analyses
Ramón Díaz-Uriarte <ramon-diaz@teleline.es> and Theodore Garland, Jr <tgarland@facstaff.wisc.edu>, <tgarland@citrus.ucr.edu>
Manipulation and analysis of phylogenetically simulated data sets
and phylogenetically based analyses using GLS.

Functions for Phylogenetically Based Statistical Analyses
Ramon Diaz-Uriarte <rdiaz@cnio.es> and Theodore Garland, Jr
<theodore.garland@ucr.edu>
Manipulation and analysis of phylogenetically simulated
data sets and phylogenetically based analyses using GLS.

Ramón Díaz-Uriarte <rdiaz@cnio.es> and Theodore Garland, Jr <tgarland@facstaff.wisc.edu>, <tgarland@citrus.ucr.edu>

Ramon Diaz-Uriarte <rdiaz@cnio.es> and Theodore Garland, Jr <tgarland@facstaff.wisc.edu>, <tgarland@citrus.ucr.edu>

Ramon Diaz-Uriarte <rdiaz@cnio.es> and Theodore Garland, Jr
<tgarland@facstaff.wisc.edu>, <tgarland@citrus.ucr.edu>

Poisson Hurdle Clustering for Sparse Microbiome Data
Clustering analysis for sparse microbiome data, based on a Poisson hurdle model.

Evaluation of the proportional hazards assumption with a
standardized score process
R (>= 1.8.0), survival, graphics, splines
This package provides tools for the evaluation of the goodness of fit and the predictive capacity of the proportional hazards model.

Evaluation of the Proportional Hazards Assumption with a
Standardized Score Process
Provides tools for the evaluation of the goodness of fit and the predictive capacity of the proportional hazards model.

This package enables to evaluate and plot the standardized score process of OQuigley (2003). A function to evaluate the predictive ability of the proportional hazards model with the R2 coefficient of OQuigley and Flandre (1994) is provided.