Rphylip provides an R interface for the PHYLIP package. All users
of Rphylip will thus first have to install the PHYLIP phylogeny methods
program package (Felsenstein 2013). See
http://evolution.genetics.washington.edu/phylip.html for more information
about installing PHYLIP.

Rphylip provides an R interface for the PHYLIP package. All users
of Rphylip will thus first have to install the PHYLIP phylogeny methods
program package (Felsenstein 2013). See http://www.phylip.com for more
information about installing PHYLIP.

Phylogenetic Comparative Tools for Missing Data and
Within-Species Variation
Eric W. Goolsby, Jorn Bruggeman, Cecile Ane
Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data. Available functions allow ancestral state reconstruction, missing data imputation, phylogenetic regression (phylogenetic generalized least squares), and phylogenetic principal components analysis (pPCA).
Rcpp, doBy, geiger, phylolm, phytools, mvnmle

Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data. Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.
Rcpp, doBy, geiger, phylolm, phytools, mvnmle, Matrix

Rcpp, doBy, geiger, phylolm, phytools, mvnmle, Matrix, MASS

Rcpp, doBy, geiger, phylolm, phytools, Matrix, MASS

c(person("Eric W.", "Goolsby", role = c("aut", "cre"),
email = "eric.goolsby.evolution@gmail.com"),
person("Jorn", "Bruggeman", role = "aut"),
person("Cecile", "Ane", role = "aut"))
Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data (Goolsby et al. 2017). Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.
Eric W. Goolsby [aut, cre],
Jorn Bruggeman [aut],
Cecile Ane [aut]