c(
person("Nan", "Xiao", email = "me@nanx.me", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-0250-5673")),
person("Qing-Song", "Xu", email = "qsxu@csu.edu.cn", role = c("aut")),
person("Dong-Sheng", "Cao", role = "aut"))
Nan Xiao [aut, cre] (0000-0002-0250-5673),
Qing-Song Xu [aut],
Dong-Sheng Cao [aut]

Nan Xiao [aut, cre] (<https://orcid.org/0000-0002-0250-5673>),
Qing-Song Xu [aut],
Dong-Sheng Cao [aut]

Bottom-Up Proteomics and LiP-MS Quality Control and Data
Analysis Tools
c(person(given = "Jan-Philipp",
family = "Quast",
role = c("aut", "cre"),
email = "quast@imsb.biol.ethz.ch"),
person(given = "Dina",
family = "Schuster",
role = c("aut"),
email = "dschuster@ethz.ch"),
person(given = "ETH Zurich",
role = c("cph", "fnd")))
Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Schopper et al. (2017) <doi:10.1038/nprot.2017.100>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.
rlang, dplyr, stringr, magrittr, data.table, janitor,
progress, purrr, tidyr, ggplot2, forcats, tibble, plotly,
ggrepel, methods, utils, grDevices
testthat, covr, knitr, rmarkdown, proDA, limma, dendextend,
pheatmap, heatmaply, viridis, iq, furrr, future, parallel,
seriation, drc, naniar, httr, igraph, stringi, STRINGdb
Jan-Philipp Quast [aut, cre],
Dina Schuster [aut],
ETH Zurich [cph, fnd]

Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.
rlang, dplyr, stringr, magrittr, data.table, janitor,
progress, purrr, tidyr, ggplot2, forcats, tibble, plotly,
ggrepel, utils, grDevices, curl