graphics, grDevices, stats, utils, doParallel, ergm (>=
4.2.2), foreach, network (>= 1.17.2), RColorBrewer, ape,
lazyeval, ggplot2, tibble, methods, rlang, dplyr, coda

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters
c(
person(given = "Sam Abbott",
role = c("aut", "cre"),
email = "sam.abbott@lshtm.ac.uk",
comment = c(ORCID = "0000-0001-8057-8037")),
person("Joel", "Hellewell",
email = "joel.hellewell@lshtm.ac.uk",
role = c("aut"),
comment = c(ORCID = "0000-0003-2683-0849")),
person("Robin", "Thompson",
email = "robin.thompson@lshtm.ac.uk",
role = c("aut")),
person("Katelyn", "Gostic",
email = "kgostic@uchicago.edu",
role = c("aut")),
person("Katharine", "Sherratt",
email = "katharine.sherratt@lshtm.ac.uk",
role = c("aut")),
person("Sophie", "Meakin",
email = "sophie.meaking@lshtm.ac.uk",
role = c("aut")),
person("James", "Munday",
email = "james.munday@lshtm.ac.uk",
role = c("aut")),
person("Nikos", "Bosse",
role = c("aut")),
person("Joe", "Hickson",
email = "joseph.hickson@metoffice.gov.uk",
role = c("aut")),
person("Paul", "Mee",
email = "paul.mee@lshtm.ac.uk",
role = c("ctb")),
person("Peter", "Ellis",
email = "peter.ellis2013nz@gmail.com",
role = c("ctb")),
person(given = "EpiForecasts",
role = c("aut")),
person("Sebastian", "Funk",
email = "sebastian.funk@lshtm.ac.uk",
role = c("aut")))
Estimates the time-varying reproduction number, rate of spread,
and doubling time using a range of open-source tools (Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>),
and current best practices (Gostic et al. (2020) <doi:10.1101/2020.06.18.20134858>).
It aims to help users avoid some of the limitations of naive implementations in a framework
that is informed by community feedback and is under active development.
cowplot, data.table, futile.logger (>= 1.4), future.apply,
ggplot2, HDInterval, lubridate, methods, patchwork, purrr, Rcpp
(>= 0.12.0), rstan (>= 2.18.1), rstantools (>= 2.0.0), scales,
stats, truncnorm,
countrycode, dplyr, EpiSoon, forecastHybrid, here,
kableExtra, knitr, magrittr, rmarkdown, rnaturalearth,
spelling, tidyr,
Sam Abbott [aut, cre] (<https://orcid.org/0000-0001-8057-8037>),
Joel Hellewell [aut] (<https://orcid.org/0000-0003-2683-0849>),
Robin Thompson [aut],
Katelyn Gostic [aut],
Katharine Sherratt [aut],
Sophie Meakin [aut],
James Munday [aut],
Nikos Bosse [aut],
Joe Hickson [aut],
Paul Mee [ctb],
Peter Ellis [ctb],
EpiForecasts [aut],
Sebastian Funk [aut]