Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)
Provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published algorithms
and seeding methods, and provides a framework to test, develop and plug
new/custom algorithms. Most of the built-in algorithms have been optimized
in C++, and the main interface function provides an easy way of performing
parallel computations on multicore machines.
graphics, stats, stringr (>= 1.0.0), digest, grid, grDevices,
gridBase, colorspace, RColorBrewer, foreach, doParallel,
ggplot2, reshape2
Orphaned on 2018-02-23 as maintainer email addressed
bounced after months of non-response..

R (>= 3.0.0), methods, utils, pkgmaker (>= 0.17.4), registry,
rngtools (>= 1.2.3), cluster
'rmatrix.R' 'nmf-package.R' 'utils.R' 'simulation.R'
'versions.R' 'colorcode.R' 'options.R' 'algorithmic.R'
'atracks.R' 'grid.R' 'aheatmap.R' 'NMF-class.R'
'extractFeatures.R' 'setNMFClass.R' 'NMFstd-class.R'
'fixed-terms.R' 'NMFOffset-class.R' 'NMFns-class.R'
'nmfModel.R' 'NMFfit-class.R' 'rnmf.R' 'heatmaps.R'
'NMFSet-class.R' 'registry.R' 'NMFStrategy-class.R'
'NMFStrategyFunction-class.R' 'NMFStrategyIterative-class.R'
'NMFStrategyOctave-class.R' 'registry-algorithms.R'
'algorithms-base.R' 'algorithms-brunet.R' 'NMFSeed-class.R'
'registry-seed.R' 'seed-base.R' 'parallel.R' 'nmf.R'
'transforms.R' 'Bioc-layer.R' 'NMFplots.R' 'algorithms-lnmf.R'
'algorithms-lsnmf.R' 'algorithms-pe-nmf.R' 'algorithms-snmf.R'
'algorithms-siNMF.R' 'seed-ica.R' 'seed-nndsvd.R' 'data.R'
'tests.R' 'run.R'

fastICA, doMPI, bigmemory (>= 4.2), synchronicity(>= 1.3.2),
corpcor, xtable, devtools, knitr, bibtex, RUnit, mail, Biobase
'colorcode.R' 'options.R' 'grid.R' 'atracks.R' 'aheatmap.R'
'algorithmic.R' 'nmf-package.R' 'rmatrix.R' 'utils.R'
'versions.R' 'NMF-class.R' 'transforms.R' 'Bioc-layer.R'
'NMFstd-class.R' 'NMFOffset-class.R' 'heatmaps.R'
'NMFns-class.R' 'nmfModel.R' 'fixed-terms.R' 'NMFfit-class.R'
'NMFSet-class.R' 'NMFStrategy-class.R' 'registry.R'
'NMFSeed-class.R' 'NMFStrategyFunction-class.R'
'NMFStrategyIterative-class.R' 'NMFplots.R'
'registry-algorithms.R' 'algorithms-base.R' 'algorithms-lnmf.R'
'algorithms-lsnmf.R' 'algorithms-pe-nmf.R' 'algorithms-siNMF.R'
'algorithms-snmf.R' 'data.R' 'extractFeatures.R' 'parallel.R'
'registry-seed.R' 'nmf.R' 'rnmf.R' 'run.R' 'seed-base.R'
'seed-ica.R' 'seed-nndsvd.R' 'setNMFClass.R' 'simulation.R'
'tests.R'