ape (>= 5.3), graphics, methods, mvtnorm, Matrix, matrixcalc,
ouch, PCMBase (>= 1.2.10), stats

Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F.Hansen (2012) <doi:10.1016/j.jtbi.2012.08.005>. The suggested PCMBaseCpp package (which significantly speeds up the likelihood calculations) can be obtained from <https://github.com/venelin/PCMBaseCpp/>.
bootstrap.R evolmodelest.R matrixexps.R phylgls.R
sdecovariancephyl.R wrappers.R ci.R fitch.mvsl.R
matrixparametrizations.R PhyloSDEestim.R sdemoments.R estimBM.R
getESS.R modelparams.R phyltree_paths.R simulVasicekprocphyl.R
estimGLSGC.R loglik.R modelparamssummary.R precalcs.R
simulVasicekproc.R estimMAXLIK.R make.states.mvsl.R
modelparamstransform.R regimes.R trees2slouch.mvsl.R
simulclustphyl.R
ape (>= 5.3), graphics, methods, mvtnorm, Matrix, matrixcalc,
ouch, PCMBase (>= 1.2.10), stats, TreeSim

c(person(family="Bartoszek",given="Krzysztof",role=c("cre","aut"),email="krzbar@protonmail.ch"),
person(family="Fuentes-Gonzalez", given="Jesualdo", email="jafuentesgonzalez@ua.edu",role=c("ctb")),
person(family="Pienaar", given="Jason", email="jason.pienaar@ua.edu",role=c("ctb")))
PCMBaseCpp (>= 0.1.9), geiger, ggplot2, knitr, rdryad (>=
1.0.0), rmarkdown
Krzysztof Bartoszek [cre, aut],
Jesualdo Fuentes-Gonzalez [ctb],
Jason Pienaar [ctb]

bootstrap.R evolmodelest.R matrixexps.R phylgls.R
sdecovariancephyl.R wrappers.R ci.R fitch.mvsl.R
from_matrixcalc_1_0_3_matrixcalculations.R
matrixparametrizations.R PhyloSDEestim.R sdemoments.R estimBM.R
getESS.R modelparams.R phyltree_paths.R simulVasicekprocphyl.R
estimGLSGC.R loglik.R modelparamssummary.R precalcs.R
simulVasicekproc.R estimMAXLIK.R make.states.mvsl.R
modelparamstransform.R regimes.R trees2slouch.mvsl.R
simulclustphyl.R

c(person(family="Bartoszek",given="Krzysztof",role=c("cre","aut"),email="krzbar@protonmail.ch"),
person(family="Clarke", given="John", email="j.clarke.paleo@gmail.com",role=c("ctb")),
person(family="Fuentes-Gonzalez", given="Jesualdo", email="jafuentesgonzalez@ua.edu",role=c("ctb")),
person(family="Pienaar", given="Jason", email="jason.pienaar@ua.edu",role=c("ctb")))
bootstrap.R evolmodelest.R matrixexps.R phylgls.R
sdecovariancephyl.R wrappers.R ci.R fitch.mvsl.R
calls_to_matrixcalc.R matrixparametrizations.R PhyloSDEestim.R
sdemoments.R estimBM.R getESS.R modelparams.R phyltree_paths.R
simulVasicekprocphyl.R estimGLSGC.R loglik.R
modelparamssummary.R precalcs.R simulVasicekproc.R
estimMAXLIK.R make.states.mvsl.R modelparamstransform.R
regimes.R trees2slouch.mvsl.R simulclustphyl.R
OUphylregression.R sdemeanphyl.R
ape (>= 5.3), graphics, methods, mvtnorm, Matrix, ouch,
PCMBase (>= 1.2.10), stats, TreeSim, matrixcalc
PCMBaseCpp (>= 0.1.9), geiger, ggplot2, knitr, rmarkdown,
mvMORPH
Krzysztof Bartoszek [cre, aut],
John Clarke [ctb],
Jesualdo Fuentes-Gonzalez [ctb],
Jason Pienaar [ctb]