Gene Set Enrichment Analysis via Integration of Metabolic
Networks and RNA-Seq Data
clpAPI (>= 1.2.6), glpkAPI (>= 1.2.11), KernSmooth, KEGGREST,
survival, ctc, knitr, rmarkdown
utils, stats, methods, parallel, grDevices, graphics, Matrix
Van Du T. Tran [aut, cre], Marco Pagni [aut]
Integrates metabolic networks and RNA-seq data to construct condition-specific series of metabolic sub-networks and applies to gene set enrichment analysis (Tran et al. (2018) <doi:10.1101/200964>).

glpkAPI (>= 1.3.0), clpAPI (>= 1.2.7), KernSmooth, KEGGREST,
survival, ctc, knitr, rmarkdown

utils, stats, methods, parallel, grDevices, graphics, Matrix,
sys
Integrates metabolic networks and RNA-seq data to construct condition-specific series of metabolic sub-networks and applies to gene set enrichment analysis (Tran et al. (2018) <doi:10.1093/bioinformatics/bty929>).

glpkAPI (>= 1.3.0), clpAPI (>= 1.2.7), topGO (>= 2.24.0),
unix, KernSmooth, KEGGREST, survival, ctc, knitr, rmarkdown
utils, stats, methods, parallel, grDevices, graphics, Matrix,
AnnotationDbi (>= 1.32.3)

utils, stats, methods, parallel, grDevices, graphics, Matrix,
AnnotationDbi (>= 1.32.3), GO.db (>= 3.2.2)

glpkAPI (>= 1.3.0), topGO (>= 2.24.0), unix, KEGGREST,
survival, knitr, rmarkdown

Datasets and Functions for Reproducing Meta-Analyses
person(given = "Felipe",
family = "Mattioni Maturana",
role = c("aut", "cre", "cph"),
email = "felipe.mattioni@med.uni-tuebingen.de",
comment = c(ORCID = "0000-0002-4221-6104"))
Dataset and functions from the meta-analysis published in Medicine & Science in Sports & Exercise.
It contains all the data and functions to reproduce the analysis.
"Effectiveness of HIIE versus MICT in Improving Cardiometabolic Risk Factors in Health and Disease: A Meta-analysis".
Felipe Mattioni Maturana, Peter Martus, Stephan Zipfel, Andreas M Nieß (2020) <doi:10.1249/MSS.0000000000002506>.
tibble, magrittr, usethis, dplyr (>= 1.0.0), ggplot2 (>=
3.2.1), ggfittext, cli (>= 2.0.1), forcats, ggimage, patchwork
(>= 1.0.0), scales, stringr, tidyr (>= 1.0.2), purrr, meta (>=
4.11-0), glue, rmarkdown
knitr, here, Rd2roxygen, kableExtra, fansi, downloadthis (>=
0.2.0), spelling
Felipe Mattioni Maturana [aut, cre, cph]
(<https://orcid.org/0000-0002-4221-6104>)