Canonical Correlation Analysis based on Kernel Independence
Measures
Canonical correlation analysis that extracts nonlinear
correlation through the use of Hilbert Schmidt Independence
Criterion and Centered Kernel Target Alignment.

A Path-Based BCD for Proximal Function of Latent Group Lasso
Implementation of the block coordinate descent procedure for
solving the proximal function of latent group Lasso, highlighted by
decomposing a DAG into several non-overlapping path graphs, and getting
closed-form solution for each path graph. The procedure was introduced
as Algorithm 4 in Yan and Bien (2015) <https://arxiv.org/abs/1512.01631>
"Hierarchical Sparse Modeling: A Choice of Two Regularizers", and the
closed-form solution for each path graph is solved in Algorithm 3 of
that paper.
Xiaohan Yan <xy257@cornell.edu>, Jacob Bien

Implementation of the block coordinate descent procedure for
solving the proximal function of latent group Lasso, highlighted by
decomposing a DAG into several non-overlapping path graphs, and getting
closed-form solution for each path graph. The procedure was introduced
as Algorithm 4 in Yan and Bien (2017) <doi:10.1214/17-STS622>
"Hierarchical Sparse Modeling: A Choice of Two Group Lasso Formulations", and the
closed-form solution for each path graph is solved in Algorithm 3 of
that paper.
Xiaohan Yan [aut, cre], Jacob Bien [aut, cre]

Jan Bulla <Jan.Bulla@mcs.vuw.ac.nz>, Ingo Bulla <ingobulla@gmx.de>, Oleg Nenadic <onenadi@uni-goettingen.de>
A package for computation of hidden semi markov models

Jan Bulla <Jan.Bulla@mcs.vuw.ac.nz>, Ingo Bulla
<ingobulla@gmx.de>, Oleg Nenadic <onenadi@uni-goettingen.de>

Jan Bulla <bulla@math.unicaen.fr>, Ingo Bulla
<ingobulla@googlemail.com>

Phasing and imputation of half-sib families using SNP data
Mohammad Ferdosi <mferdosi@myune.edu.au>, Cedric Gondro <cgondro2@une.edu.au>
Identification of recombination events, haplotype reconstruction and sire imputation using half-sib family SNP data

Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data