Identification and Analysis of ceRNA Regulation
Mengying Zhang,Yongsheng Li,Juan Xu*,Xia Li*
Provides several functions to identify and analyse miRNA sponge, including
popular methods for identifying miRNA sponge interactions, two types
of global ceRNA regulation prediction methods and three types of context-specific
prediction methods( Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based
on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data,
respectively. In addition, this package provides several network analysis modules
for viewing the constructed ceRNA-ceRNA network and analysis of the topological features.
competing endogenous RNA (ceRNA),
GeneExpression,triplet,function,Software

Provides several functions to identify and analyse miRNA sponge, including
popular methods for identifying miRNA sponge interactions, two types
of global ceRNA regulation prediction methods and four types of context-specific
prediction methods( Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based
on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data,
respectively. In addition, this package provides several network analysis modules
for viewing the constructed ceRNA-ceRNA network and analysis of the topological features.

Provides several functions to identify and analyse miRNA sponge, including
popular methods for identifying miRNA sponge interactions, two types
of global ceRNA regulation prediction methods and four types of context-specific
prediction methods( Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based
on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data,
respectively. In addition, For predictive ceRNA relationship pairs, this package
provides several downstream analysis algorithms, including regulatory network
analysis and functional annotation analysis, as well as survival prognosis analysis
based on expression of ceRNA ternary pair.

This package is an object-oriented implementation of one-dimensional cellular automata. It supports many of the features offered by Mathematica, including elementary rules, user-defined rules, radii, user-defined seeding, and plotting.