Fits hidden Markov models with discrete non-parametric
observation distributions to data sets.  Simulates data
from such models.  Finds most probable underlying hidden
states, the most probable sequences of such states, and the
log likelihood of a collection of observations given the
parameters of the model.

Hidden Markov Models with Discrete Non-Parametric Observation
Distributions

Fits hidden Markov models with discrete non-parametric
observation distributions to data sets.  The observations may
be univariate or bivariate. Simulates data from such models.
Finds most probable underlying hidden states, the most
probable sequences of such states, and the log likelihood
of a collection of observations given the parameters of
the model.  Auxiliary predictors are accommodated in the
univariate setting.

Constructs Asymmetric Hidden Markov Models
c(person(given = "Marcos L.P",
family = "Bueno",
role = "aut",
email = "mbueno@cs.ru.nl"),
person(given = "Arjen",
family = "Hommersom",
role = c("aut", "cre"),
email = "arjen.hommersom@ou.nl"),
person(given = "Joop",
family = "Thibaudier",
role = "aut",
email = "jthibaudier@gmail.com"),
person(given = "Marco",
family = "Scutari",
role = "ctb",
email = "marco.scutari@gmail.com"),
person(given = "Robert",
family = "Ness",
role = "ctb"),
person("Robert Gentleman and Ross Ihaka",
role = "cph"),
person("The R Development Core Team",
role = "cph"),
person("The R Foundation",
role = "cph"))
Asymmetric hidden Markov model (HMM-A) learning.
HMM-As are similar to regular HMMs, but use Bayesian Networks (BNs) in
their emission distribution. The HMM-As can therefore offer more problem
insight [Bueno et al. 2017, <doi:10.1016/j.ijar.2017.05.011>].
bnlearn, mhsmm, MCMCpack, Rgraphviz, graph, methods
Marcos L.P Bueno [aut],
Arjen Hommersom [aut, cre],
Joop Thibaudier [aut],
Marco Scutari [ctb],
Robert Ness [ctb],
Robert Gentleman and Ross Ihaka [cph],
The R Development Core Team [cph],
The R Foundation [cph]

c(person(given = "Marcos L.P",
family = "Bueno",
role = "aut",
email = "mbueno@cs.ru.nl"),
person(given = "Arjen",
family = "Hommersom",
role = c("aut", "cre"),
email = "arjen.hommersom@ou.nl"),
person(given = "Joop",
family = "Thibaudier",
role = "aut",
email = "jthibaudier@gmail.com"),
person(given = "Marco",
family = "Scutari",
role = "ctb",
email = "marco.scutari@gmail.com"),
person(given = "Robert",
family = "Ness",
role = "ctb"),
person(given = "Robert Gentleman and Ross Ihaka",
role = "cph"),
person(given = "The R Development Core Team",
role = "cph"),
person(given = "The R Foundation",
role = "cph"))