Improved False Positive Control of Gene-Permuting GSEA with
Absolute Filtering
Gene-permuting GSEA (or preranked GSEA) generates a lot of false positive gene-sets due to the inter-gene correlation in each gene set. Such false positives can be successfully reduced by filtering with the one-tailed absolute GSEA results. This package provides a function that performs gene-permuting GSEA calculation with or without the absolute filtering.

Gene-set enrichment analysis (GSEA) is popularly used to assess the enrichment of differential signal in a pre-defined gene-set without using a cutoff threshold for differential expression. The significance of enrichment is evaluated through sample- or gene-permutation method. Although the sample-permutation approach is highly recommended due to its good false positive control, we must use gene-permuting method if the number of samples is small. However, such gene-permuting GSEA (or preranked GSEA) generates a lot of false positive gene-sets as the inter-gene correlation in each gene set increases. These false positives can be successfully reduced by filtering with the one-tailed absolute GSEA results. This package provides a function that performs gene-permuting GSEA calculation with or without the absolute filtering. Without filtering, users can perform (original) two-tailed or one-tailed absolute GSEA.

Inferring Directional Conservative Causal Core Gene Networks
Infers directional conservative causal core (gene) networks. It is an advanced version of the algorithm C3NET by providing directional network. Gokmen Altay (2018) <doi:10.1101/271031>, bioRxiv.

Creation and evaluation of Acceptance Sampling Plans
This package provides functionality for creating and
evaluating acceptance sampling plans. Plans can be single,
double or multiple sampling plans

Creation and Evaluation of Acceptance Sampling Plans
Provides functionality for creating and
evaluating acceptance sampling plans. Sampling plans can be single,
double or multiple.

c(person("Andreas", "Kiermeier", role = c("aut","cre"),
email="Andreas.Kiermeier@gmail.com"),
person("Peter", "Bloomfield", role = "ctb",
email = "Peter_Bloomfield@ncsu.edu"))
Andreas Kiermeier [aut, cre],
Peter Bloomfield [ctb]