R interface to the iPlant Discovery Environment
Barb Banbury <bbanbury@utk.edu>, Kurt Michels
<kamichels@math.arizona.edu>, Jeremy M. Beaulieu
<jeremy.beaulieu@yale.edu>, Brian O'Meara <bomeara@utk.edu>
An R interface to the iPlant DE (and, in the future, other
phyloinformatics web apps, like the CIPRES Science Gateway)

Barb Banbury <darwinthesun@gmail.com> and Kurt Michels <kamichels@math.arizona.edu>, Jeremy M. Beaulieu <jeremy.beaulieu@yale.edu>, Brian O'Meara <bomeara@utk.edu>
Provides an interface to the the many computational resources iPlant offers through their RESTful application programming interface, see <http://www.iplantcollaborative.org/> for more information about iPlant, and <http://www.iplantcollaborative.org/ci/iplant-science-apis> for its APIs.  Currently, 'rPlant' functions interact with the iPlant Agave API, the Taxonomic Name Resolution Service API, and the Phylotastic Taxosaurus API. Before using 'rPlant', users will have to register with the iPlant Collaborative.  See <http://agaveapi.co/> for more information on the Agave API and <http://user.iplantcollaborative.org/> to register with iPlant.

rPlant is an R interface to the the many computational
resources iPlant offers through their RESTful application
programming interface. Currently, rPlant functions interact
with the iPlant foundational API, the Taxonomic Name Resolution
Service API, and the Phylotastic Taxosaurus API. Before using
rPlant, users will have to register with the iPlant
Collaborative.
http://www.iplantcollaborative.org/discover/discovery-environment

R (>= 2.13.0), rjson, RCurl, seqinr, knitcitations

Robin Nunkesser <Robin.Nunkesser@tu-dortmund.de>, Silke Straatmann, Simone Wenzel
An R interface to a modified version of PORTA.

An R interface to a modified version of PORTA. For more information on PORTA see http://www.zib.de/Optimization/Software/Porta/.

Robin Nunkesser <Robin.Nunkesser@tu-dortmund.de>, Silke
Straatmann, Simone Wenzel
An R interface to a modified version of PORTA. For more
information on PORTA see
http://www.zib.de/Optimization/Software/Porta/.