methods, ROCR, mixtools, lars, ica, tsne, Rtsne, fpc, ape,
pbapply, igraph, RANN, dplyr, RColorBrewer, MASS, irlba,
reshape2, gplots, Rcpp (>= 0.11.0), dtw, SDMTools, plotly,
Hmisc, httr, tidyr, ggridges, metap, lmtest, cluster,
fitdistrplus, png, doSNOW, reticulate, foreach, hdf5r
'RcppExports.R' 'alignment.R' 'seurat.R' 'conversion.R' 'as.R'
'cluster_determination.R' 'cluster_determination_internal.R'
'cluster_validation.R' 'data.R' 'deprecated_functions.R'
'differential_expression.R'
'differential_expression_internal.R' 'dimensional_reduction.R'
'dimensional_reduction_internal.R'
'dimensional_reduction_utilities.R' 'interaction.R'
'jackstraw.R' 'jackstraw_internal.R' 'multi_modal.R'
'not_used_yet.R' 'plotting.R' 'plotting_internal.R'
'plotting_utilities.R' 'preprocessing.R'
'preprocessing_internal.R' 'printing_utilities.R' 'scoring.R'
'snn.R' 'spatial.R' 'spatial_internal.R' 'tSNE_project.R'
'utilities.R' 'utilities_internal.R'
gdata, VGAM, tclust, testthat, caret, ranger, loomR, phateR,
S4Vectors, made4, SummarizedExperiment, SingleCellExperiment,
MAST, DESeq2, destiny

c(
person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-9448-8833')),
person(given = 'Andrew', family = 'Butler', email = 'abutler@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0003-3608-0463')),
person(given = 'Paul', family = 'Hoffman', email = 'nygcSatijalab@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-7693-8957')),
person(given = 'Tim', family = 'Stuart', email = 'tstuart@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-3044-0897')),
person(given = 'Jeff', family = 'Farrell', email = 'jfarrell@g.harvard.edu', role = 'ctb'),
person(given = 'Shiwei', family = 'Zheng', email = 'szheng@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-6682-6743')),
person(given = 'Christoph', family = 'Hafemeister', email = 'chafemeister@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-6365-8254')),
person(given = 'Patrick', family = 'Roelli', email = 'proelli@nygenome.org', role = 'ctb')
)
ape, cluster, cowplot, fitdistrplus, future, future.apply,
ggplot2 (>= 3.0.0), ggrepel, ggridges, graphics, grDevices,
grid, ica, igraph, irlba, KernSmooth, lmtest, MASS, Matrix (>=
1.2.14), metap, pbapply, plotly, png, RANN, RColorBrewer, Rcpp,
reticulate, rlang, ROCR, rsvd, Rtsne, scales, sctransform (>=
0.2.0), SDMTools, stats, tools, tsne, utils
'RcppExports.R' 'generics.R' 'clustering.R' 'visualization.R'
'convenience.R' 'data.R' 'differential_expression.R'
'dimensional_reduction.R' 'integration.R' 'objects.R'
'preprocessing.R' 'tree.R' 'utilities.R'
loomR, testthat, hdf5r, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2, GenomicRanges,
GenomeInfoDb, IRanges, rtracklayer
Rahul Satija [aut] (<https://orcid.org/0000-0001-9448-8833>),
Andrew Butler [aut] (<https://orcid.org/0000-0003-3608-0463>),
Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>),
Tim Stuart [aut] (<https://orcid.org/0000-0002-3044-0897>),
Jeff Farrell [ctb],
Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>),
Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>),
Patrick Roelli [ctb]