Scrubbing and Other Data Cleaning Routines for fMRI
c(
person(given = "Amanda",
family = "Mejia",
email = "mandy.mejia@gmail.com",
role = c("aut", "cre")),
person(given = "John",
family = "Muschelli",
email = "muschellij2@gmail.com",
role = c("aut"),
comment = c(ORCID = "0000-0001-6469-1750")),
person(given = "Damon",
family = "Pham",
email = "damondpham@gmail.com",
role = c("aut"),
comment = c(ORCID = "0000-0001-7563-4727")),
person(given = "Daniel",
family = "McDonald",
email = "daniel@stat.ubc.ca",
role = c("ctb"))
)
Data-driven fMRI denoising with projection scrubbing (Pham et al
(2022) <arXiv:2108.00319>). Also includes routines for DVARS (Derivatives
VARianceS) (Afyouni and Nichols (2018)
<doi:10.1016/j.neuroimage.2017.12.098>), motion scrubbing (Power et al
(2012) <doi:10.1016/j.neuroimage.2011.10.018>), aCompCor (anatomical
Components Correction) (Muschelli et al (2014)
<doi:10.1016/j.neuroimage.2014.03.028>), detrending, and nuisance
regression. Projection scrubbing and DVARS are also applicable to other
outlier detection tasks involving high-dimensional data.
MASS, e1071, pesel, robustbase, stats, utils
corpcor, cowplot, ciftiTools, gifti, knitr, rmarkdown,
RNifti, ggplot2, gsignal, fastICA, oro.nifti, testthat (>=
3.0.0), covr
Amanda Mejia [aut, cre],
John Muschelli [aut] (<https://orcid.org/0000-0001-6469-1750>),
Damon Pham [aut] (<https://orcid.org/0000-0001-7563-4727>),
Daniel McDonald [ctb]

Data-driven fMRI denoising with projection scrubbing (Pham et al
(2021) <arXiv:2108.00319>). Also includes routines for DVARS (Derivatives
VARianceS) (Afyouni and Nichols (2018)
<doi:10.1016/j.neuroimage.2017.12.098>), motion scrubbing (Power et al
(2012) <doi:10.1016/j.neuroimage.2011.10.018>), aCompCor (anatomical
Components Correction) (Muschelli et al (2014)
<doi:10.1016/j.neuroimage.2014.03.028>), detrending, and nuisance
regression. Projection scrubbing and DVARS are also applicable to other
outlier detection tasks involving high-dimensional data.
expm, MASS, e1071, pesel, robustbase, stats, utils, Rcpp
corpcor, cowplot, ciftiTools, knitr, rmarkdown, RNifti,
ggplot2, ggpubr, ica, neurobase, oro.nifti, gridExtra, testthat
(>= 2.1.0), covr