c(person("Anna", "Plantinga", role = c("aut", "cre"), email = "amp9@williams.edu"),
person("Nehemiah", "Wilson", role = c("aut", "ctb")),
person("Haotian", "Zheng", role = c("aut", "ctb")),
person("Tianying", "Wang", role = c("aut", "ctb")),
person("Xiang", "Zhan", role = c("aut", "ctb")),
person("Michael", "Wu", role = "aut"),
person("Ni", "Zhao", role = c("aut", "ctb")),
person("Jun", "Chen", role = "aut"))
Test for overall association between microbiome composition data
and phenotypes via phylogenetic kernels. The phenotype can be univariate
continuous or binary (Zhao et al. (2015) <doi:10.1016/j.ajhg.2015.04.003>),
survival outcomes (Plantinga et al. (2017) <doi:10.1186/s40168-017-0239-9>),
multivariate (Zhan et al. (2017) <doi:10.1002/gepi.22030>) and
structured phenotypes (Zhan et al. (2017) <doi:10.1111/biom.12684>).
The package can also use robust regression (unpublished work) and
integrated quantile regression (Wang et al. (2021) <doi:10.1093/bioinformatics/btab668>).
In each case, the microbiome community effect is modeled nonparametrically
through a kernel function, which can incorporate phylogenetic tree information.
Anna Plantinga [aut, cre],
Nehemiah Wilson [aut, ctb],
Haotian Zheng [aut, ctb],
Tianying Wang [aut, ctb],
Xiang Zhan [aut, ctb],
Michael Wu [aut],
Ni Zhao [aut, ctb],
Jun Chen [aut]

knitr, vegan, rmarkdown, tidyverse, kableExtra

A set of functions to carry out quality control, training and classification analyses on datasets containing MiRNA multiplets. The package implements the method introduced in Ricci et al. (2015) <doi:10.1186/s12859-015-0715-9>.
c(
person("Michele", "Castelluzzo", email = "michele.castelluzzo@unitn.it", role = "aut"),
person("Alessio", "Perinelli", email = "alessio.perinelli@unitn.it", role = "cre"),
person("Simone", "Detassis", role = "aut"),
person("Michela Alessandra", "Denti", email = "michela.denti@unitn.it", role = "aut"),
person("Leonardo", "Ricci", email = "leonardo.ricci@unitn.it", role = "aut"))
Michele Castelluzzo [aut],
Alessio Perinelli [cre],
Simone Detassis [aut],
Michela Alessandra Denti [aut],
Leonardo Ricci [aut]