Testing Pleiotropy in Multiparental Populations
person(given = "Frederick J",
family = "Boehm",
role = c("aut", "cre"),
email = "frederick.boehm@gmail.com",
comment = c(ORCID = "0000-0002-1644-5931"))
We implement an
adaptation of Jiang & Zeng's (1995) <https://www.genetics.org/content/140/3/1111> likelihood ratio test for testing
the null hypothesis of pleiotropy against the alternative hypothesis,
two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) <https://www.genetics.org/content/140/3/1111>
and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in
that our test accommodates multiparental populations.
dplyr, gemma2, ggplot2, magrittr, MASS, Rcpp, rlang, stringr,
tibble, parallel, Matrix
covr, mvtnorm, knitr, rmarkdown, testthat, broman, devtools,
qtl2
Frederick J Boehm [aut, cre] (<https://orcid.org/0000-0002-1644-5931>)

dplyr, gemma2, ggplot2, magrittr, MASS, Rcpp, rlang, tibble,
Matrix, furrr
covr, future, mvtnorm, knitr, rmarkdown, testthat, broman,
devtools, qtl2

dplyr, gemma2, ggplot2, magrittr, MASS, Rcpp, rlang, tibble,
parallel
covr, mvtnorm, knitr, rmarkdown, testthat, broman, devtools,
qtl2, parallelly

Saunak Sen, Jaya Satagopan, and Gary Churchill
GPL version 2 or newer (http://www.gnu.org/copyleft/gpl.html)

Saunak Sen, Jaya Satagopan, Karl Broman, and Gary Churchill

Saunak Sen, Jaya Satagopan, Karl Broman, Brian Yandell and Gary Churchill

Brian S. Yandell <yandell@stat.wisc.edu> and Nengjun Yi
<nyi@ms.soph.uab.edu>, with contributions from Tapan Mehta, Samprit
Banerjee, and Daniel Shriner (uab), Whipple Neely (UW-Madison) and Randy
von Smith (Jackson Labs)
Functions for model selection for genetic architecture.
stats, qtl (>= 1.0.3), lattice, coda, tools, MASS

Brian S. Yandell <yandell@stat.wisc.edu> and Nengjun Yi <nyi@ms.soph.uab.edu>,
with contributions from
Tapan Mehta, Samprit Banerjee and Daniel Shriner (UA-Birmingham),
W. Whipple Neely (UW-Madison) and
Hao Wu and Randy von Smith (Jackson Laboratory).

Brian S. Yandell <yandell@stat.wisc.edu>
and Nengjun Yi <nyi@ms.soph.uab.edu>,
with contributions from
Tapan Mehta, Samprit Banerjee, Daniel Shriner
and Ramprasad Venkataraman (UA-Birmingham),
Jee Young Moon, W. Whipple Neely (UW-Madison) and
Hao Wu and Randy von Smith (Jackson Laboratory).