FNN, ggplot2, igraph, Matrix, Rtsne, umap, uwot

Provides a smooth mapping of multidimensional points into
low-dimensional space defined by a self-organizing map. Designed to work
with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019)
<doi:10.12688/f1000research.21642.1>.

Computation and Visualization of Empirical Joint Distribution
(Empirical Joint CDF)
Computes and visualizes empirical joint distribution of multivariate data with optimized algorithms and multi-thread computation. There is a faster algorithm using dynamic programming to compute the whole empirical joint distribution of a bivariate data. There are optimized algorithms for computing empirical joint CDF function values for other multivariate data. Visualization is focused on bivariate data. Levelplots and wireframes are included.

c(
person("Davide", "Pagano", email = "davide.pagano@unibs.it", role = c("aut","cre")),
person("Lorenzo", "Sostero", email = "l.sostero@studenti.unibs.it", role = "aut"))
Davide Pagano [aut, cre],
Lorenzo Sostero [aut]
A C++ implementation of the following evolutionary
algorithms: Bat Algorithm (Yang, 2010 <doi:10.1007/978-3-642-12538-6_6>),
Cuckoo Search (Yang, 2009 <doi:10.1109/nabic.2009.5393690>),
Genetic Algorithms (Holland, 1992, ISBN:978-0262581110),
Gravitational Search Algorithm (Rashedi et al., 2009 <doi:10.1016/j.ins.2009.03.004>),
Grey Wolf Optimization (Mirjalili et al., 2014 <doi:10.1016/j.advengsoft.2013.12.007>),
Harmony Search (Geem et al., 2001 <doi:10.1177/003754970107600201>),
Improved Harmony Search (Mahdavi et al., 2007 <doi:10.1016/j.amc.2006.11.033>),
Moth-flame Optimization (Mirjalili, 2015 <doi:10.1016/j.knosys.2015.07.006>),
Particle Swarm Optimization (Kennedy et al., 2001 ISBN:1558605959),
Simulated Annealing (Kirkpatrick et al., 1983 <doi:10.1126/science.220.4598.671>),
Whale Optimization Algorithm (Mirjalili and Lewis, 2016 <doi:10.1016/j.advengsoft.2016.01.008>).
'EmiR' can be used not only for unconstrained optimization problems, but also
in presence of inequality constrains, and variables restricted to be integers.
Rcpp (>= 1.0.5), methods, Rdpack, tictoc, ggplot2, tibble,
tidyr, dplyr, gganimate, mathjaxr, data.table, plot3D