rgl, MASS, e1071, randomForest, pROC, ROCR, discretization,
arules, pamr, class, nnet, rpart, FSelector, RWeka, grDevices,
graphics, stats, utils

Contains functions for the data analysis with the emphasis on biological data, including several algorithms for feature ranking, feature selection, classification
algorithms with the embedded validation procedures.
The functions can deal with numerical as well as with nominal features. Includes also the functions for calculation
of feature AUC (Area Under the ROC Curve) and HUM (hypervolume under manifold) values and construction 2D- and 3D- ROC curves.
Provides the calculation of Area Above the RCC (AAC) values and construction of Relative Cost Curves
(RCC) to estimate the classifier performance under unequal misclassification costs problem.
There exists the special function to deal with missing values, including different imputing schemes.
rgl, MASS, e1071, randomForest, pROC, ROCR, arules, pamr,
class, nnet, rpart, FSelector, RWeka, grDevices, graphics,
stats, utils

Alessio Boattini and Federico C. F. Calboli; Vincente Canto Cassola together with Martin Maechler authored the function mtx.exp.
The Biodem package provides a number of functions for Biodemographycal analysis.

Alessio Boattini and Federico C. F. Calboli; Vincente Canto
Cassola together with Martin Maechler authored the function
mtx.exp.
The Biodem package provides a number of functions for
Biodemographycal analysis.

The Biodem package provides a number of functions for Biodemographic analysis.

GUI for biodiversity and community ecology analysis
Roeland Kindt (World Agroforestry Centre) <R.Kindt@CGIAR.org>
This package provides a GUI (Graphical User Interface, via the R-Commander) and some utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website.
MASS, mgcv, cluster, Rcmdr (>= 1.3-4), car, RODBC, rpart, effects, multcomp, ellipse, maptree, sp, splancs, spatial, akima