tidyr,reshape2,magrittr, jointseg,plotly,shiny,RCurl,foreach,
GenomicInteractions,Matrix,OpenImageR,biomaRt,matrixStats,
plyr,data.table,dplyr,numbers,rtracklayer, doParallel,stringr
knitr, rmarkdown,remotes,pwr,ComplexHeatmap,
spatialfil,HiCseg,igraph,visNetwork,circlize,
InteractionSet,GenomicRanges,GenomicFeatures,IRanges,rslurm,
shinythemes,shinycssloaders,DT,logging,heatmaply,
S4Vectors,BiocManager,shinyjs,htmltools,htmlwidgets,
GenomeInfoDb,BSgenome.Hsapiens.UCSC.hg19,tibble

knitr, rmarkdown,remotes,pwr,ComplexHeatmap,
HiCseg,igraph,visNetwork,circlize,
InteractionSet,GenomicRanges,GenomicFeatures,IRanges,rslurm,
shinythemes,shinycssloaders,DT,logging,heatmaply,
S4Vectors,BiocManager,shinyjs,htmltools,htmlwidgets,
GenomeInfoDb,BSgenome.Hsapiens.UCSC.hg19,tibble,smoothie

tidyr,reshape2,magrittr, jointseg,shiny,RCurl,foreach,
GenomicInteractions,Matrix,OpenImageR,biomaRt,matrixStats,
plyr,data.table,dplyr,numbers,rtracklayer, doParallel,stringr
knitr, remotes,pwr,ComplexHeatmap,rmarkdown,
HiCseg,igraph,visNetwork,circlize,plotly,
InteractionSet,GenomicRanges,GenomicFeatures,IRanges,rslurm,
shinythemes,shinycssloaders,DT,logging,heatmaply,
S4Vectors,BiocManager,shinyjs,htmltools,htmlwidgets,
GenomeInfoDb,BSgenome.Hsapiens.UCSC.hg19,tibble,smoothie

tidyr,reshape2,magrittr, jointseg,shiny,RCurl,foreach,
GenomicInteractions,Matrix,OpenImageR,biomaRt,matrixStats,
plyr,data.table,dplyr,numbers, doParallel,stringr,rtracklayer

tidyr,reshape2,magrittr, jointseg,shiny,RCurl,foreach,
GenomicInteractions,Matrix,OpenImageR,biomaRt,matrixStats,
plyr,data.table,dplyr, doParallel,stringr,rtracklayer,Hmisc

This package carries out association analysis of common
copy number variants in population-based studies. This package
includes functions for analysing association under a series of
study designs (case-control, cohort, etc), using several
dependent variables (class status, censored data, counts) as
response, adjusting for covariates and considering various
inheritance models. It also includes functions for inferring
copy number (CNV genotype calling).  Various classes and
generic functions (print, summary, plot, anova, ... ) have been
created to facilitate the analysis.