c(
person("Julien", "Chiquet", role = c("aut", "cre"), email = "julien.chiquet@inrae.fr",
comment = c(ORCID = "0000-0002-3629-3429")),
person("Mahendra", "Mariadassou", role = "aut", email = "mahendra.mariadassou@inrae.fr",
comment = c(ORCID = "0000-0003-2986-354X")),
person("Stéphane", "Robin", role ="ctb", email = "stephane.robin@inrae.fr"),
person("François", "Gindraud", role = "aut", email = "francois.gindraud@gmail.com")
)
The Poisson-lognormal model and variants (Chiquet, Mariadassou and Robin,
2020 <doi:10.1101/2020.10.07.329383>) can be used for
a variety of multivariate problems when count data are at play, including
principal component analysis for count data, discriminant analysis, model-based clustering and
network inference. Implements variational algorithms to fit such models accompanied with a set of
functions for visualization and diagnostic.
methods, stats, MASS, future, future.apply, R6, glassoFast,
Matrix, Rcpp, nloptr (>= 1.2.0), igraph, grid, gridExtra,
dplyr, tidyr, purrr, ggplot2, corrplot, magrittr, rlang
knitr, rmarkdown, testthat, covr, pkgdown, biomformat,
phyloseq, spelling, factoextra, Wrench
'PLNfit-class.R' 'PLN.R' 'PLNLDA.R' 'PLNLDAfit-S3methods.R'
'PLNLDAfit-class.R' 'PLNPCA.R' 'PLNPCAfamily-S3methods.R'
'PLNfamily-class.R' 'PLNPCAfamily-class.R'
'PLNPCAfit-S3methods.R' 'PLNPCAfit-class.R'
'PLNfamily-S3methods.R' 'PLNfit-S3methods.R' 'PLNmixture.R'
'PLNmixturefamily-S3methods.R' 'PLNmixturefamily-class.R'
'PLNmixturefit-S3methods.R' 'PLNmixturefit-class.R'
'PLNmodels-package.R' 'PLNnetwork.R'
'PLNnetworkfamily-S3methods.R' 'PLNnetworkfamily-class.R'
'PLNnetworkfit-S3methods.R' 'PLNnetworkfit-class.R'
'RcppExports.R' 'deprecated.R' 'import_utils.R' 'mollusk.R'
'oaks.R' 'plot_utils.R' 'trichoptera.R' 'utils-pipe.R'
'utils.R' 'zzz.R'
Julien Chiquet [aut, cre] (<https://orcid.org/0000-0002-3629-3429>),
Mahendra Mariadassou [aut] (<https://orcid.org/0000-0003-2986-354X>),
Stéphane Robin [ctb],
François Gindraud [aut]

methods, stats, MASS, future, future.apply, R6, glassoFast,
Matrix, Rcpp, nloptr, igraph, grid, gridExtra, dplyr, tidyr,
purrr, ggplot2, corrplot, magrittr, rlang