Bias and Precision Plots to Compare Two Measurements with
Possibly Heteroscedastic Measurement Errors
Mingkai Peng, Patrick Taffe, Tyler Williamson
Implementation of the methodology from the paper titled
"Effective plots to assess bias and precision in method comparison studies"
published in Statistical Methods in Medical Research, P. Taffe (2016) <doi:10.1177/0962280216666667>.

Mingkai Peng, Patrick Taffé, Tyler Williamson
Implementation of the methodology from the paper entitled
"Effective plots to assess bias and precision in method comparison studies"
published in Statistical Methods in Medical Research, P. Taffé (2018) <doi:10.1177/0962280218759693>.

It plots the output from Methpup (https://github.com/XinYang6699/Methpup)

Full Bayesian Partition Model for Identifying Differentially
Methylated Loci
c(
person("Henan", "Wang", email = "hwg58@mail.missouri.edu",
role = c("cre", "aut")),
person("Yuchen", "Wang", email = "ycwang0712@gmail.com",
role = "aut")
)
A full Bayesian partition model is implemented to identify
differentially methylated loci from single-nucleotide resolution sequencing
data.
Henan Wang [cre, aut],
Yuchen Wang [aut]

Detection of Differentially Methylated Regions using
MethylCap-Seq Data
Deepak N. Ayyala, David E. Frankhouser, Javkhlan-Ochir Ganbat, Guido Marcucci, Ralf Bundschuh, Pearlly Yan and Shili Lin.
Provides a univariate and several high dimensional multivariate test statistics for detecting differentially methylated regions based on MethylCap-seq data.

Metrics is a set of evaluation metrics that is commonly
used in supervised machine learning.

Orphaned and corrected on 2017-04-21 as check errors
were not corrected despite reminders.

An implementation of evaluation metrics in R that are commonly
used in supervised machine learning. It implements metrics for
regression, time series, binary classification, classification,
and information retrieval problems. It has zero dependencies and
a consistent, simple interface for all functions.
c(
person("Ben", "Hamner", role = c("aut", "cph"), email = "ben@benhamner.com"),
person("Michael", "Frasco", role = c("aut", "cre"), email = "mfrasco6@gmail.com"),
person("Erin", "LeDell", role = c("ctb"), email = "oss@ledell.org"))
Ben Hamner [aut, cph],
Michael Frasco [aut, cre],
Erin LeDell [ctb]