person("Marloes", "Maathuis", role= c("aut", "cre"),
email= "marloesmaathuis@gmail.com")

Climate-sensitive forest simulator based on the principles of
machine learning. It stimulates all key processes in the forest: radial growth,
height growth, mortality, crown recession, regeneration and harvesting. The
method for predicting tree heights was described by Skudnik and Jevšenak
(2022) <doi:10.1016/j.foreco.2022.120017>, while the method for predicting
basal area increments (BAI) was described by Jevšenak and Skudnik (2021)
<doi:10.1016/j.foreco.2020.118601>.

c(person("Quentin", "Grimonprez", role = c("aut", "cre"), email = "quentin.grimonprez@inria.fr"),
person("Samuel", "Blanck", role = "ctb"),
person("Alain", "Celisse", role = "ths"),
person("Guillemette", "Marot", role = "ths"),
person("Yi","Yang", role = "ctb"),
person("Hui","Zou", role = "ctb"))
It implements a new procedure of variable selection in the context of redundancy between explanatory variables, which holds true with high dimensional data (Grimonprez et al. (2018) <https://hal.inria.fr/hal-01857242>).
gglasso, MASS, Matrix, fastcluster, FactoMineR
Quentin Grimonprez [aut, cre],
Samuel Blanck [ctb],
Alain Celisse [ths],
Guillemette Marot [ths],
Yi Yang [ctb],
Hui Zou [ctb]

gglasso, MASS, Matrix, fastcluster, FactoMineR, parallelDist

c(person("Quentin", "Grimonprez", role = c("aut", "cre"), email = "quentingrim@yahoo.fr"),
person("Samuel", "Blanck", role = "ctb"),
person("Alain", "Celisse", role = "ths"),
person("Guillemette", "Marot", role = "ths"),
person("Yi","Yang", role = "ctb"),
person("Hui","Zou", role = "ctb"))

Datasets for Use with Salvan, Sartori and Pace (2020)
Nicola Sartori, Alessandra Salvan, Luigi Pace
Contains the datasets for use with the book Salvan, Sartori and Pace (2020, ISBN:978-88-470-4002-1) "Modelli Lineari Generalizzati".

Tools and functions to fit a multilevel index of dissimilarity.
raster (>= 2.5.8), sp (>= 1.2.3), knitr, rmarkdown

Maximum Likelihood Estimation of DNA Methylation and
Hydroxymethylation Levels
Samara Kiihl [aut, cre],
Maria Jose Martinez-Garrido [aut],
Arce Domingo-Relloso [aut],
Jose Bermudez [aut],
Maria Tellez-Plaza [aut]
Maximum likelihood estimates (MLE) of the levels of 5-mC and 5-hmC
in the DNA using information from BS-conversion, TAB-conversion,
and oxBS-conversion methods. One can use information from all three methods
or any combination of two of them. Estimates are based on Binomial model by
Qu et al. (2013) <doi:10.1093/bioinformatics/btt459> and
Kiihl et al. (2018, to appear).
Software, MethylationArray, Epigenetics, DNAMethylation,
Microarray, TwoChannel, OneChannel
minfi, BiocStyle, microbenchmark, GEOquery, knitr, rmarkdown