person("Ethan", "Bass", , "ethanbass@gmail.com", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-6175-6739"))
Tools for high-throughput analysis of HPLC-DAD/UV
chromatograms (or similar data). Includes functions for preprocessing, alignment,
peak-finding and fitting, peak-table construction, data-visualization, etc.
Preprocessing and peak-table construction follow the rough formula laid out
in alsace (Wehrens, R., Bloemberg, T.G., and Eilers P.H.C., 2015.
<doi:10.1093/bioinformatics/btv299>. Alignment of chromatograms is available
using parametric time warping (ptw) (Wehrens, R., Bloemberg, T.G., and Eilers
P.H.C. 2015. <doi:10.1093/bioinformatics/btv299>) or variable penalty dynamic
time warping (VPdtw) (Clifford, D., & Stone, G. 2012. <doi:10.18637/jss.v047.i08>).
Peak-finding uses the algorithm by Tom O'Haver
<http://terpconnect.umd.edu/~toh/spectrum/PeakFindingandMeasurement.htm>.
Peaks are then fitted to a gaussian or exponential-gaussian hybrid peak shape
using non-linear least squares (Lan, K. & Jorgenson, J. W. 2001.
<doi:10.1016/S0021-9673(01)00594-5>). See the vignette for more details and
suggested workflow.
chromConverter, dynamicTreeCut, fastcluster, graphics,
grDevices, lattice, methods, minpack.lm, parallel, ptw,
pvclust, scales, smoother, stats, utils
knitr, rmarkdown, spelling, testthat (>= 3.0.0), VPdtw

knitr, rmarkdown, spelling, testthat (>= 3.0.0), vdiffr,
VPdtw

Interface to Chromosome Counts Database API
person("Matthew", "Pennell", role = c("aut", "cre"),
email = "mwpennell@gmail.com")
A programmatic interface to the Chromosome Counts Database
(http://ccdb.tau.ac.il/). This package is part of the rOpenSci suite
(http://ropensci.org)

c(
person("Matthew", "Pennell", role = "aut", email = "mwpennell@gmail.com",
comment = c(ORCID = "0000-0002-2886-3970")),
person("Paula Andrea", "Martinez", email = "orchid00@gmail.com",
role = "aut", comment = c(ORCID = "0000-0002-8990-1985")),
person("Karl W", "Broman", role=c("aut", "cre"), email="broman@wisc.edu",
comment=c(ORCID = "0000-0002-4914-6671"))
)
A programmatic interface to the Chromosome Counts Database
(<http://ccdb.tau.ac.il/>), Rice et al. (2014) <doi:10.1111/nph.13191>.
This package is part of the rOpenSci suite (<https://ropensci.org>).
Matthew Pennell [aut] (<https://orcid.org/0000-0002-2886-3970>),
Paula Andrea Martinez [aut] (<https://orcid.org/0000-0002-8990-1985>),
Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>)