Provides a GUI to Several Statistical Methods
rJava, XML, lattice, bio.infer, gdata, gmodels, quantreg,
rpart, JavaGD, car, MASS

rJava, XML, lattice, bio.infer, gdata, gmodels, quantreg,
rpart, JavaGD, car, MASS, iplots, SparseM, MatrixModels,
gtools, png, pbkrtest, lme4, minqa, Rcpp, nloptr
Using Java GUI for R (JGR), CADStat provides a user
interface for several statistical methods -
scatterplot, boxplot, linear regression, generalized linear
regression, quantile regression, conditional probability
calculations, and regression trees.

rJava, XML, lattice, bio.infer, gdata, gmodels, quantreg,
rpart, JavaGD, car, MASS,

Analyzes Differential Promoter Composition in CAGE data
CAGExploreR implements an algorithm to calculate and evaluate the statistical significance of the uncertainty coefficient (a.k.a. Theil's U or the proportional entropy reduction). This statistic measures the strength of association between two nominal random variables. One specific application of this package is the detection of differential composition (differences in vectors of proportions) of genes subunits (e.g. promoters) across various biological conditions. The two nominal variables here are the biological conditions and the promoters within genes. The differential composition and the genomic location of these promoters can also be visualized using this package.
rbamtools, R2HTML, GenomicFeatures, biomaRt, AnnotationDbi

R (>= 3.0.2), edgeR, data.table, AnnotationDbi

Comparison of Algorithms with Iterative Sample Size Estimation
c(person("Felipe", "Campelo", email = "fcampelo@ufmg.br",
role = c("aut", "cre")),
person("Fernanda", "Takahashi", email = "fernandact@ufmg.br",
role = c("aut")))
Functions for performing experimental comparisons of algorithms
using adequate sample sizes for power and accuracy.
MOEADr, smoof, knitr, rmarkdown, car, dplyr, ggplot2,
ggridges
Felipe Campelo [aut, cre],
Fernanda Takahashi [aut]

assertthat (>= 0.1), parallel (>= 3.5.0), pbmcapply (>= 1.2.5)

MOEADr, smoof, knitr, rmarkdown, car, dplyr, ggplot2,
ggridges, pkgdown