'RcppExports.R' 'cache.R' 'coala.R' 'feature.R'
'feature_growth.R' 'feature_migration.R' 'feature_mutation.R'
'feature_outgroup.R' 'feature_pop_merge.R'
'feature_recombination.R' 'feature_sample.R'
'feature_selection.R' 'feature_size_change.R'
'feature_sumstats.R' 'feature_unphased.R' 'locus.R' 'model.R'
'model_build.R' 'model_check.R' 'model_examples.R'
'model_getters.R' 'model_print.R' 'model_scale.R'
'model_simulate.R' 'onLoad.R' 'par_zero_inflation.R'
'parameter.R' 'parameter_prior.R' 'parameter_variation.R'
'sample_seed.R' 'search_executable.R' 'segsites.R'
'simulator_class.R' 'simulator_ms.R' 'simulator_msms.R'
'simulator_scrm.R' 'simulator_seqgen.R' 'sumstat.R'
'sumstat_dna.R' 'sumstat_file.R' 'sumstat_four_gamete.R'
'sumstat_ihh.R' 'sumstat_jsfs.R' 'sumstat_mcmf.R'
'sumstat_nucleotide_div.R' 'sumstat_omega.R'
'sumstat_seg_sites.R' 'sumstat_sfs.R' 'sumstat_tajimas_d.R'
'sumstat_trees.R' 'tempfile.R'

Coalescent simulators can rapidly simulate biological sequences
evolving according to a given model of evolution.
You can use this package to specify such models, to conduct the simulations
and to calculate additional statistics from the results.
It relies on existing simulators for doing the simulation, and currently
supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites
mutation models by combining the simulators with the program 'seq-gen'.
abc (>= 2.0), knitr, rmarkdown, testthat (>= 0.11.0)

c(
person('Paul', 'Staab', , 'develop@paulstaab.de', role=c('aut', 'cre')),
person('Dirk', 'Metzler', , 'metzler@bio.lmu.de', role=c('aut', 'ths'))
)
abc (>= 2.0), knitr, PopGenome (>= 2.1.0), phyclust (>=
0.1-16), rmarkdown, testthat (>= 0.11.0)
'RcppExports.R' 'cache.R' 'coala.R' 'feature.R'
'feature_growth.R' 'feature_ignore_singletons.R'
'feature_migration.R' 'feature_mutation.R' 'feature_outgroup.R'
'feature_pop_merge.R' 'feature_recombination.R'
'feature_sample.R' 'feature_selection.R'
'feature_size_change.R' 'feature_sumstats.R'
'feature_unphased.R' 'import_popgenome.R' 'locus.R' 'model.R'
'model_build.R' 'model_check.R' 'model_examples.R'
'model_getters.R' 'model_print.R' 'model_scale.R'
'model_simulate.R' 'onLoad.R' 'par_zero_inflation.R'
'parameter.R' 'parameter_prior.R' 'parameter_variation.R'
'sample_seed.R' 'search_executable.R' 'segsites.R'
'simulator_class.R' 'simulator_ms.R' 'simulator_msms.R'
'simulator_scrm.R' 'simulator_seqgen.R' 'sumstat.R'
'sumstat_dna.R' 'sumstat_file.R' 'sumstat_four_gamete.R'
'sumstat_ihh.R' 'sumstat_jsfs.R' 'sumstat_mcmf.R'
'sumstat_nucleotide_div.R' 'sumstat_omega.R'
'sumstat_seg_sites.R' 'sumstat_sfs.R' 'sumstat_tajimas_d.R'
'sumstat_trees.R' 'tools.R'
Paul Staab [aut, cre],
Dirk Metzler [aut, ths]