c(person(given = "Thijs",
family = "Janzen",
role = c("aut", "cre"),
email = "thijsjanzen@gmail.com"),
person(given = "Fernando",
family = "Diaz G.",
role = "ctb",
email = "ferdiazfer@gmail.com"),
person(given = "Richèl J.C.",
family = "Bilderbeek",
role = "ctb"))
Individual-based simulations forward in time, simulating how patterns in ancestry along the genome change after admixture. Full description can be found in Janzen (2020) <doi:10.1101/2020.10.19.343491>.
hierfstat, methods, Rcpp, tibble, ggplot2, rlang, ggridges
covr, dplyr, junctions, magrittr, rmarkdown, testit,
testthat, knitr
Thijs Janzen [aut, cre],
Fernando Diaz G. [ctb],
Richèl J.C. Bilderbeek [ctb]

Individual-based simulations forward in time,
simulating how patterns in ancestry along the genome change after
admixture. Full description can be found in Janzen (2020)
<doi:10.1101/2020.10.19.343491>.
ggplot2, ggridges, hierfstat, methods, Rcpp, RcppParallel,
rlang, stringr, tibble, vcfR
covr, dplyr, junctions, knitr, magrittr, rmarkdown, testit,
testthat, pbapply

Individual-based simulations forward in time,
simulating how patterns in ancestry along the genome change after
admixture. Full description can be found in Janzen (2021)
<doi:10.1111/2041-210X.13612>.
dplyr, junctions, knitr, magrittr, rmarkdown, testit,
testthat, pbapply

Implements the genomic mating approach in the recently published article: Akdemir, D., & Sanchez, J. I. (2016). Efficient Breeding by Genomic Mating. Frontiers in Genetics, 7. <DOI:10.3389/fgene.2016.00210>.

Rcpp (>= 0.12.9), parallel, stats, emoa, scatterplot3d

Deniz Akdemir, Julio Isidro Sanch\'ez, Hanna Haikka, Itaraju Baracuhy Brum
Rcpp, parallel, stats,emoa,
scatterplot3d,qtl,SOMbrero,kohonen,
plotly,graphics,dplyr,magrittr,LowRankQP

Collection of Tools for Genomic Data Analysis
A loose collection of tools for the analysis of expression and genotype data, currently with the main focus on (e)QTL and MDR analysis.

A collection of I/O tools for handling the most commonly used genomic datafiles, like fasta/-q, bed, gff, gtf, ped/map and vcf.