c(
person("Daniel", "Jacob", email="daniel.jacob@inra.fr", role=c("cre", "aut"), comment=c(ORCID="0000-0002-6687-7169")))

Identify Rogue Taxa in Sets of Phylogenetic Trees
c(person("Martin R.", 'Smith',
email = "martin.smith@durham.ac.uk",
role = c("aut", "cre", "cph"),
comment = c(ORCID = "0000-0001-5660-1727")),
person(given = "Andre J.", family="Aberer", role = c("aut", "cph"),
email = "andre.aberer@googlemail.com")
)
Interface to 'RogueNaRok' (Aberer et al. 2013)
<doi:10.1093/sysbio/sys078>.
Rogue taxa are a class of taxa with uncertain position in a
phylogenetic tree. For inference methods that yield a tree set (bootstrapping,
Bayesian tree searches), rogue taxa can assume different positions for each
tree. The presence of rogue taxa in a tree set can potentially remove all
information from a consensus tree. The sum of branch support
values in a consensus tree can often be increased by removing rogue taxa.
Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Andre J. Aberer [aut, cph]

Rogue ('wildcard') taxa are leaves with uncertain phylogenetic
position.
Their position may vary from tree to tree under inference methods that yield a
tree set (e.g. bootstrapping, Bayesian tree searches, maximum parsimony).
The presence of rogue taxa in a tree set can potentially remove all
information from a consensus tree. The information content of a consensus
tree - a function of its resolution and branch support values - can often be
increased by removing rogue taxa.
'Rogue' provides an explicitly information-theoretic approach to rogue
detection (Smith, forthcoming), and an interface to 'RogueNaRok'
(Aberer et al. 2013) <doi:10.1093/sysbio/sys078>.
ape (>= 5.0), cli (>= 3.0), fastmatch, grDevices, matrixStats,
Rdpack (>= 0.7), Rfast, stats, TreeDist (>= 2.1.1), TreeTools
(>= 1.5.0), utils,

Rogue ("wildcard") taxa are leaves with uncertain phylogenetic
position.
Their position may vary from tree to tree under inference methods that yield a
tree set (e.g. bootstrapping, Bayesian tree searches, maximum parsimony).
The presence of rogue taxa in a tree set can potentially remove all
information from a consensus tree. The information content of a consensus
tree - a function of its resolution and branch support values - can often be
increased by removing rogue taxa.
'Rogue' provides an explicitly information-theoretic approach to rogue
detection (Smith 2022) <doi:10.1093/sysbio/syab099>,
and an interface to 'RogueNaRok' (Aberer et al. 2013)
<doi:10.1093/sysbio/sys078>.
ape (>= 5.0), cli (>= 3.0), fastmatch, grDevices, matrixStats,
Rdpack (>= 0.7), Rfast, stats, TreeDist (> 2.2.0), TreeTools
(>= 1.6.0), utils,