Fit Conway-Maxwell Poisson (COM-Poisson or CMP) regression models
to count data (Sellers & Shmueli, 2010) <doi:10.1214/09-AOAS306>. The
package provides functions for model estimation, dispersion testing, and
diagnostics. Zero-inflated CMP regression (Sellers & Raim, 2016)
<doi:10.1016/j.csda.2016.01.007> is also supported.

Copy Number Profile Curve-Based Association Test
Amanda Brucker, Shannon T. Holloway, Jung-Ying Tzeng
Implements a kernel-based association test for copy number
variation (CNV) aggregate analysis
in a certain genomic region (e.g., gene set, chromosome, or genome) that is
robust to the within-locus and across-locus etiological heterogeneity, and
bypass the need to define a "locus" unit for CNVs.
Brucker, A., et al. (2020) <doi:10.1101/666875>.
'commonAUC.R' 'segLength.R' 'popFunc.R' 'uniqueCombinations.R'
'createDF.R' 'deldup.R' 'CAUCkernel.R' 'cnvData.R' 'compFunc.R'
'dataChecks.R' 'test.qt.R' 'test.bt.R' 'pv_func.R' 'concur.R'

An implementation of the computational strategy for the
comprehensive analysis of condition-dependent operon maps in prokaryotes
proposed by Fortino et al. (2014) <DOI:10.1186/1471-2105-15-145>.
It uses RNA-seq transcriptome profiles to improve prokaryotic operon map inference.
stats, utils, mclust, earth, plyr, seqinr, randomForest,
rminer, GenomicRanges, GenomeInfoDb, S4Vectors, IRanges

CrOss-platform NOrmalization in R: normalize gene
expression data to be comparable for different microarray
platforms.
CLSOCP, tseries, outliers, nortest, quadprog, zoo,
preprocessCore, fields, fpc, flexclust, plyr, CONORData

"Jason Rudy" <jcrudy@gmail.com>, "Faramarz Valafar"
<faramarz@sciences.sdsu.edu>
CLSOCP, tseries, outliers, nortest, quadprog, zoo,
preprocessCore, fields, fpc, flexclust, plyr

R (>= 2.10), CLSOCP, tseries, outliers, nortest, quadprog,
zoo, preprocessCore, fields, fpc, flexclust, plyr

Nery Sofia Huerta-Pacheco, Victor Manuel Aguirre-Torres, Teresa Lopez-Alvarez
Consonance Analysis is a useful numerical and graphical approach for evaluating the consistency of the measurements and the panel of people involved in sensory evaluation. It makes use of several uni and multivariate techniques either graphical or analytical.
readxl, pander, raster, REdaS, FactoMineR