A Multi-Modal Simulator for Spearheading Single-Cell Omics
Analyses
c(person(given = "Robrecht",
family = "Cannoodt",
role = c("aut", "cre", "cph"),
email = "rcannood@gmail.com",
comment = c(ORCID = "0000-0003-3641-729X")),
person(given = "Wouter",
family = "Saelens",
role = "aut",
email = "wouter.saelens@ugent.be",
comment = c(ORCID = "0000-0002-7114-6248")))
A novel, multi-modal simulation engine for
studying dynamic cellular processes at single-cell resolution. 'dyngen'
is more flexible than current single-cell simulation engines. It
allows better method development and benchmarking, thereby stimulating
development and testing of novel computational methods. Cannoodt et
al. (2020) <doi:10.1101/2020.02.06.936971>.
assertthat, dplyr, dynutils (>= 1.0.4), furrr, ggplot2, ggraph
(>= 2.0), ggrepel, GillespieSSA2 (>= 0.2.6), grDevices, grid,
igraph, lmds, Matrix, methods, patchwork, pbapply, purrr, rlang
(>= 0.4.1), stats, tibble, tidygraph, tidyr, utils, viridis
covr, dynwrap (>= 1.2.0), knitr, R.rsp, rmarkdown, testthat
Robrecht Cannoodt [aut, cre, cph]
(<https://orcid.org/0000-0003-3641-729X>),
Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>)

assertthat, dplyr, dynutils (>= 1.0.4), ggplot2, ggraph (>=
2.0), ggrepel, GillespieSSA2 (>= 0.2.6), grDevices, grid,
igraph, lmds, Matrix, methods, patchwork, pbapply, purrr, rlang
(>= 0.4.1), stats, tibble, tidygraph, tidyr, utils, viridis
anndata, covr, dynwrap (>= 1.2.0), R.rsp, rmarkdown, Seurat,
SingleCellExperiment (>= 1.5.3), SummarizedExperiment, testthat

A novel, multi-modal simulation engine for
studying dynamic cellular processes at single-cell resolution. 'dyngen'
is more flexible than current single-cell simulation engines. It
allows better method development and benchmarking, thereby stimulating
development and testing of novel computational methods. Cannoodt et
al. (2021) <doi:10.1038/s41467-021-24152-2>.

c(person(given = "Robrecht",
family = "Cannoodt",
role = c("aut", "cre", "cph"),
email = "rcannood@gmail.com",
comment = c(ORCID = "0000-0003-3641-729X")),
person(given = "Wouter",
family = "Saelens",
role = "aut",
email = "wouter.saelens@gmail.com",
comment = c(ORCID = "0000-0002-7114-6248")))