Modelling interacting microbial populations - example applications
include human gut microbiota, rumen microbiota and phytoplankton. Solves a
system of ordinary differential equations to simulate microbial growth and
resource uptake over time.
'applyTraitTradeOffs.R' 'assignNAsToMFGs.R'
'assignStrainTraits.R' 'checkResInfo.R' 'checkSolution.R'
'checkStoichiom.R' 'combineGrowthLimFuncDefault.R'
'combinePathsFuncDefault.R' 'createDF.R' 'data.R'
'derivsDefault.R' 'entryRateFuncDefault.R'
'extraGrowthLimFuncDefault.R' 'getAllResources.R'
'getGroupName.R' 'getKeyRes.R' 'getMolarStoichiom.R'
'getMolarYields.R' 'getNonBoostFrac.R' 'getNumPaths.R'
'getPHcorners.R' 'getStrainPHcorners.R'
'getStrainParamsFromFile.R' 'getValues.R'
'growthLimFuncDefault.R' 'makeInflowFromSoln.R'
'makeParamMatrixG.R' 'makeParamMatrixS.R'
'massBalanceFuncDefault.R' 'microPop-internal.R'
'microPop-package.R' 'microPopModel.R' 'pHFuncDefault.R'
'pHLimFuncDefault.R' 'pHcentreOfMass.R' 'plotTraitChange.R'
'productionFuncDefault.R' 'quickPlot.R'
'removalRateFuncDefault.R' 'uptakeFuncDefault.R'
'rateFuncsDefault.R' 'replaceListItems.R'
'runMicroPopExample.R' 'subsetFunc.R' 'waterUptakeRatio.R'

'applyTraitTradeOffs.R' 'assignNAsToMFGs.R'
'assignStrainTraits.R' 'checkResInfo.R' 'checkSolution.R'
'checkStoichiom.R' 'combineGrowthLimFuncDefault.R'
'combinePathsFuncDefault.R' 'createDF.R' 'data.R'
'derivsDefault.R' 'entryRateFuncDefault.R'
'extraGrowthLimFuncDefault.R' 'getAllResources.R'
'getGroupName.R' 'getKeyRes.R' 'getMolarStoichiom.R'
'getMolarYields.R' 'getNonBoostFrac.R' 'getNumPaths.R'
'getPHcorners.R' 'getStrainPHcorners.R'
'getStrainParamsFromFile.R' 'getValues.R'
'growthLimFuncDefault.R' 'makeInflowFromSoln.R'
'makeParamMatrixG.R' 'makeParamMatrixS.R'
'massBalanceFuncDefault.R' 'microPop-internal.R'
'microPop-package.R' 'microPopModel.R' 'onAttach.R'
'pHFuncDefault.R' 'pHLimFuncDefault.R' 'pHcentreOfMass.R'
'plotTraitChange.R' 'productionFuncDefault.R' 'quickPlot.R'
'removalRateFuncDefault.R' 'uptakeFuncDefault.R'
'rateFuncsDefault.R' 'replaceListItems.R'
'runMicroPopExample.R' 'subsetFunc.R' 'waterUptakeRatio.R'