c(
person("Elizabeth", "Allman", email = "esallman@alaska.edu",
role = "aut"),
person("Hector", "Banos", email = "hbassnos@gmail.com",
role =  "aut"),
person("Jonathan", "Mitchell", email = "jonathanmitchell88@gmail.com",
role =  "aut"),
person("John", "Rhodes", email = "j.rhodes@alaska.edu",
role = c("aut", "cre"),comment=c(ORCID = "0000-0001-9921-1091"))  )
Methods for analyzing and using quartets displayed on a collection of gene trees,
primarily to make inferences about the species tree or network under the multi-species
coalescent model. These include quartet hypothesis tests for the model, as developed by
Mitchell et al. (2019) <doi:10.1214/19-EJS1576>, simplex plots of quartet concordance factors
as presented by Allman et al. (2020) <doi:10.1101/2020.02.13.948083>, species tree inference methods
based on quartet distances of Rhodes (2019) <doi:10.1109/TCBB.2019.2917204> and
Yourdkhani and Rhodes (2019) <doi:10.1007/s11538-020-00773-4>, and the NANUQ algorithm for inference of level-1
species networks of Allman et al. (2019) <doi:10.1186/s13015-019-0159-2>. Software announcement by
Rhodes et al. (2020) <doi:10.1093/bioinformatics/btaa868>.
RandomFieldsUtils, zipfR, graphics, stats, Rdpack, foreach,
doParallel
Elizabeth Allman [aut],
Hector Banos [aut],
Jonathan Mitchell [aut],
John Rhodes [aut, cre] (<https://orcid.org/0000-0001-9921-1091>)

RandomFieldsUtils, zipfR, graphics, stats, Rdpack, foreach,
doParallel, methods

Tests of Multispecies Coalescent Gene Tree Simulator Output
c(
person("Elizabeth", "Allman", email = "e.allman@alaska.edu", role = c("aut", "cre", "cph")),
person("Hector", "Banos", email = "hbassnos@gmail.com", role = c("aut", "cph")),
person("John", "Rhodes", email = "j.rhodes@alaska.edu", role = c("aut", "cph")))
Statistical tests for validating multispecies coalescent gene tree simulators, using pairwise distances and rooted triple counts. Background is given by Allman, Banos, and Rhodes (2019) <arXiv:1908.01424>.
Elizabeth Allman [aut, cre, cph],
Hector Banos [aut, cph],
John Rhodes [aut, cph]