c(person(given = "Taras",
family = "Bodnar",
role = "aut",
comment = c(ORCID = "0000-0001-7855-8221")),
person(given = "Nestor",
family = "Parolya",
role = "aut",
comment = c(ORCID = "0000-0003-2147-2288")),
person(given = "Erik",
family = "Thorsén",
role = c("aut", "cre"),
email = "erik.thorsen@math.su.se",
comment = c(ORCID = "0000-0001-5992-1216")))
Constructs dynamic optimal shrinkage estimators for the weights of the global
minimum variance portfolio which are reconstructed at given reallocation
points as derived in Bodnar, Parolya, and Thorsén (2021) (<arXiv:2106.02131>).
Two dynamic shrinkage estimators are available in this package. One using
overlapping samples while the other use nonoverlapping samples.
knitr, rmarkdown, testthat (>= 3.0.0), HDShOP

Computation of functional similarities between DO terms and gene
products; DO enrichment analysis;Disease Ontology annotation
This package implements several functions useful for
computing similarities between DO terms and gene products based
on their DO annotation. Moreover it allows for computing a DO
enrichment analysis and provide basic disease ontology
annotation.

Disease Analysis toolkit for gene set; Computation of
similarities between DO terms and disease similarity between
gene products; DO enrichment analysis; Disease Ontology
annotation
This package implements several functions useful for
computing similarities between DO terms and gene products.
Moreover it allows for conducting DO enrichment analysis and
provide basic disease ontology annotation.

Disease Analysis toolkit for gene set; Computation of
similarities between DO terms and disease similarity between
gene products; Module detection among the gene set and
multilayer annotation for each module.
GOSim, SubpathwayMiner, dynamicTreeCut, moduleColor, RBGL,
graph
This package implements multiple similarity measures for
DO terms and gene products. It is aiming at disease analyis for
gene sets. Modules of a gene set could be detected and further
multilayer annoated on DO, GO and KEGG. We also provides users
to conduct DO enrichment analysis and basic information
fetching for DO.