Tuned Data Mining in R ('TDMR') performs the complete tuning of a
data mining task (predictive analytics, that is classification and regression).
Preprocessing parameters and modeling parameters can be tuned simultaneously.
It incorporates a variety of tuners (among them 'SPOT' and 'CMA' with package 'rCMA') and
allows integration of additional tuners. Noise handling in the data mining optimization
process is supported, see Koch et al. (2015) <doi:10.1016/j.asoc.2015.01.005>.
'defaultSC.R' 'defaultOpts.R' 'makeTdmRandomSeed.r'
'printTDMclassifier.r' 'printTDMregressor.r' 'tdmBigLoop.r'
'tdmClassify.r' 'tdmClassifyLoop.r' 'tdmDefaultsFill.r'
'tdmDispatchTuner.r' 'tdmEnvTMakeNew.r' 'tdmGeneralUtils.r'
'tdmGraphicUtils.r' 'tdmMapDesign.r' 'tdmMetacostRf.r'
'tdmModelingUtils.r' 'tdmOptsDefaults.r' 'tdmParaBootstrap.r'
'tdmPreprocUtils.r' 'tdmReadAndSplit.r' 'tdmReadDataset.r'
'tdmRegress.r' 'tdmRegressLoop.r' 'tdmROCR.r' 'tdmStartSpot2.r'
'tdmStartOther.r' 'tdmTuneIt.r' 'unbiasedRun.r'

cmaes, parallel, e1071, ROCR, randomForest, rCMA, rSFA

Granier's Sap Flow Sensors (TDP) Analysis
Set of functions designed to help in the
analysis of TDP sensors. Features includes dates and time conversion, weather
data interpolation, daily maximum of tension analysis and calculations required
to convert sap flow density data to sap flow rates at the tree and plot scale (For more information see : Granier (1985) <DOI:10.1051/forest:19850204> & Granier (1987) <DOI:10.1093/treephys/3.4.309>).

Companion Package for the Book "Data Integration, Manipulation
and Visualization of Phylogenetic Trees"
c(
person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
person("Shuangbin", "Xu",       email = "xshuangbin@163.com",      role = "aut", comment = c(ORCID="0000-0003-3513-5362")),
person("Lin", "Li",             email = "williamlee2220@qq.com",   role = "aut")
)
The companion package provides all data sets that are used in the book "Data Integration, Manipulation and Visualization of Phylogenetic Trees" by Guangchuang Yu (2021) <https://yulab-smu.top/treedata-book/>.
Guangchuang Yu [aut, cre, cph]
(<https://orcid.org/0000-0002-6485-8781>),
Shuangbin Xu [aut] (<https://orcid.org/0000-0003-3513-5362>),
Lin Li [aut]