Gene Network Inference from Time-Series Transcriptomic Data
The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data.  The algorithm is described in details in Lavenus et al., Plant Cell, 2015.  It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana.  The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.

Time-Domain Deconvolution of Seismometer Response
Deconvolution of instrument responses from seismic traces
and seismogram lists from RSEIS.  Includes pre-calculated
instrument responses for several common instruments.

Deconvolution of instrument responses from seismic traces and seismogram lists from RSEIS.  Includes pre-calculated instrument responses for several common instruments.

Tuned Data Mining in R (TDMR) performs a complete tuning of a data mining task.
R (>= 1.8.0), SPOT, randomForest, e1071, snowfall, matlab
'makeTdmRandomSeed.r' 'makeTdmStartOther.r' 'source.tdm.r'
'tdmClassify.r' 'tdmCompleteEval.r' 'tdmDefaultsFill.r'
'tdmDispatchTuner.r' 'tdmEmbedDataFrame.r' 'tdmGeneralUtils.r'
'tdmGetObj.r' 'tdmGraphicUtils.r' 'tdmMapDesign.r'
'tdmMetacostRf.r' 'tdmModelingUtils.r' 'tdmOptsDefaults.r'
'tdmParaBootstrap.r' 'tdmPreprocUtils.r' 'tdmRegress.r'
'tdmStartSpot.r' 'unbiasedBestRun_C.r' 'unbiasedBestRun_O.r'
'unbiasedBestRun_R.r'

R (>= 1.8.0), SPOT, randomForest, e1071, snowfall
'makeTdmRandomSeed.r' 'makeTdmStartOther.r'
'printTDMclassifier.r' 'printTDMregressor.r' 'source.tdm.r'
'tdmClassify.r' 'tdmCompleteEval.r' 'tdmDefaultsFill.r'
'tdmDispatchTuner.r' 'tdmEmbedDataFrame.r' 'tdmGeneralUtils.r'
'tdmGetObj.r' 'tdmGraphicUtils.r' 'tdmMapDesign.r'
'tdmMetacostRf.r' 'tdmModelingUtils.r' 'tdmOptsDefaults.r'
'tdmParaBootstrap.r' 'tdmPreprocUtils.r' 'tdmReadData.r'
'tdmRegress.r' 'tdmStartSpot.r' 'unbiasedBestRun_O.r'
'unbiasedRun.r'

'makeTdmRandomSeed.r' 'makeTdmStartOther.r' 'source.tdm.r'
'tdmClassify.r' 'tdmCompleteEval.r' 'tdmDefaultsFill.r'
'tdmDispatchTuner.r' 'tdmEmbedDataFrame.r' 'tdmGeneralUtils.r'
'tdmGetObj.r' 'tdmGraphicUtils.r' 'tdmMapDesign.r'
'tdmMetacostRf.r' 'tdmModelingUtils.r' 'tdmOptsDefaults.r'
'tdmPreprocUtils.r' 'tdmRegress.r' 'tdmStartSpot.r'
'unbiasedBestRun_C.r' 'unbiasedBestRun_O.r'
'unbiasedBestRun_R.r'