utils, methods, tools, graphics, grDevices, stringr, sp,
rgdal, rgeos, maptools, spdep, sf, stats, RColorBrewer,
labeling, readxl, writexl, rmapshaper, cleangeo, pbapply

utils, methods, tools, graphics, grDevices, stats,
RColorBrewer, stringr, labeling, readxl, writexl, sp, rgdal,
rgeos, sf, maptools, spdep, rmapshaper, cleangeo, pbapply

A collection of functions for computations and visualizations of microbial pan-genomes.

A collection of functions for computations and visualizations of
microbial pan-genomes.

R (>= 3.5.0), microseq, dplyr, stringr, igraph

Use R Graphics Files as Microplots (Sparklines) in Tables in
LaTeX or HTML Files, and Output Data.frames to Org-Mode
Richard M. Heiberger, with contributions from Karen Byron and Nooreen Dabbish.
Prepare lists of R graphics files to be used as
microplots (sparklines) in tables in either LaTeX or HTML files.  For LaTeX use
the Hmisc::latex() function or xtable::xtable() with
Sweave, knitr, rmarkdown, or Emacs org-mode to construct
latex tabular environments which include the graphs.  For HTML files use
either Emacs org-mode or the htmlTable::htmlTable()
function to construct an HTML file containing tables which
include the graphs.  Examples are shown with lattice
graphics, base graphics, and ggplot2 graphics.  Examples
for LaTeX include Sweave (both LaTeX-style and
Noweb-style), knitr, emacs org-mode,
and rmarkdown input files and their pdf
output files.  Examples for HTML include org-mode
and Rmd input files and their webarchive
HTML output files.  In addition, the as.orgtable function
can display a data.frame in an org-mode document.
HH, lattice, ggplot2, reshape2, grid, latticeExtra, xtable,
markdown, rmarkdown, knitr, htmlTable

R Graphics as Microplots (Sparklines) in 'LaTeX', 'HTML',
'Excel'
Prepare lists of R graphics files to be used as
microplots (sparklines) in tables in either 'LaTeX',
'HTML', or 'Excel' files.  For 'LaTeX', use the
'Hmisc::latex' function or 'xtable::xtable' function with
'Sweave', 'knitr', 'rmarkdown', or 'Emacs' 'org-mode' to
construct 'latex' tabular environments which include the
graphs.  For 'HTML' files, use either 'Emacs' 'org-mode' or the
'htmlTable::htmlTable' function to construct an 'HTML' file
containing tables which include the graphs.  For 'Excel'
use on 'Windows', the file 'examples/irisExcel.xls' includes 'VBA'
code which brings the individual panels into individual
cells in the spreadsheet.  Examples in the 'examples'
subdirectory and demos are shown with 'lattice' graphics,
'base' graphics, and 'ggplot2' graphics.  Examples for 'LaTeX'
include 'Sweave' (both 'LaTeX'-style and 'Noweb'-style), 'knitr',
'emacs' 'org-mode', and 'rmarkdown' input files and their 'pdf'
output files.  Examples for 'HTML' include 'org-mode' and 'Rmd'
input files and their webarchive 'HTML' output files.  In
addition, the 'as.orgtable' function can display a
'data.frame' in an 'org-mode' document.