Differential Coexpression Analysis of Gene Expression Microarray
Data
Functions for basic differential coexpression analyses:
gene filtering, link filtering, DCG (Differentially-Coexpressed
Gene) identification and DCL (Differentially-Coexpressed Links)
identification.Two algorithms,named DCP and DCe, are provided
for DCG-identification or DCG and DCL-identification.

Functions for basic differential coexpression analyses:
gene filtering, link filtering, DCG (Differentially-Coexpressed
Gene) identification and DCL (Differentially-Coexpressed Links)
identification.

Differential Co-expression Analysis and Differential Regulation
Analysis of Gene Expression Microarray Data
Functions for 1) gene filtration; 2) link filtration; 3)
differential co-expression analysis: DCG (Differential
Coexpressed Gene) identification and DCL (Differentially
Coexpressed Link) identification; and 4) differential
regulation analysis: DRG (Differential Regulated Gene)
identification, DRL (Differential Regulated Link)
identification, DRL visualization and regulator ranking.
R (>= 2.10), igraph, limma, org.Hs.eg.db

Functions for 1) gene filtration; 2) link filtration; 3) differential co-expression analysis: DCG (Differential Coexpressed
Gene) identification and DCL (Differentially Coexpressed Link)
identification; and 4) differential regulation analysis: DRG (Differential Regulated
Gene) identification, DRL (Differential Regulated Link)
identification, DRL visualization and regulator ranking.

Differential CoExpression Analysis and Differential Regulation
Analysis of Gene Expression Microarray Data
Functions for 1) gene filtration; 2) link filtration; 3)
differential coexpression analysis: DCG (Differential
Coexpressed Gene) identification and DCL (Differentially
Coexpressed Link) identification; and 4) differential
regulation analysis: DRG (Differential Regulated Gene)
identification, DRL (Differential Regulated Link)
identification, DRL visualization and regulator ranking.

Jing Yang, Hui Yu, Bao-Hong Liu, Zhongming Zhao, Lei Liu, Liang-Xiao Ma, Yi-Xue Li, Yuan-Yuan Li
Yang J, Yu H, Liu B-H, Zhao Z, Liu L, Ma L-X, Li Y-X and Li
Y-Y. (2013) DCGL v2.0: An R Package for Unveiling Differential
Regulation from Differential Co-expression. PLoS ONE 8(11):
e79729. doi:10.1371/journal.pone.0079729