Implements statistical techniques to understand the causal
pathways between genetic markers and a primary outcome when an
intermediate phenotype is also associated with both the marker
the the primary outcome with population-based data.

Implements statistical techniques to understand the causal
pathways between genetic markers and a primary outcome when an
intermediate phenotype is also associated with both the marker
and the primary outcome with population-based data.

CHAT is a collection of tools developed for tumor subclonality analysis using high density DNA SNP array data and sequencing data. The pipeline consists of four major compartments: 1) tumor aneuploid genome proportion (AGP) calculation and ploidy estimation. 2) segment-specific AGP calculation and absolute copy number estimation for somatic CNAs. 3) cancer cell fraction correction for somatic SNVs in clonal or subclonal sCNA regions. 4) number of subclones estimation using Dirichlet process prior followed by MCMC approach.
R (>= 2.10), parallel, DNAcopy, DPpackage

A compilation of historical through contemporary climate
measurements scraped from the Environment Canada Website
Including tools for scraping data, creating metadata and
formating temperature files.

Closest History Flow Field Forecasting for Bivariate Time Series
The software matches the current history to the closest history in a time series to build a forecast.

c(
person("Xiaoqiang", "Wang", email = "xiaoqiang.wang@sdu.edu.cn", role = "aut"),
person("Julie", "Aubert", email = "julie.aubert@agroparistech.fr", role = c("aut","cre"))
)
An exact and a variational inference for
coupled Hidden Markov Models applied to the joint detection of copy number variations.
Xiaoqiang Wang [aut],
Julie Aubert [aut, cre]

person(given = "Pu",
family = "Chen",
role = c("aut","cre"),
email = "shengnehs@qq.com")
Compute Chinese capital stocks in provinces level, based on Zhang (2008) <DOI:10.1080/14765280802028302>.

Chemical Thermodynamics and Activity Diagrams
Calculation of the standard molal thermodynamic properties
and chemical affinities of reactions between and among
minerals, inorganic, organic, and/or biomolecular aqueous and
crystalline species. Incorporation of an extensive database of
thermodynamic properties of species and algorithms for
computing the standard thermodynamic properties of neutral and
ionized proteins from amino acid group contributions.
Generation of chemical speciation and predominance diagrams for
stable and metastable equilibrium in open systems as a function
of temperature, pressure, and chemical activities or fugacities
of basis species.