c(person(given = "Lei",
family = "Song",
role = c("aut", "cre"),
email = "lsong@clarku.edu",
comment = c(ORCID = "0000-0002-4371-1473")),
person(given = "Lyndon",
family = "Estes",
role = "ths",
email = "lestes@clarku.edu"))
Collection of R functions to do purely presence-only species
distribution modeling with isolation forest (iForest) and its
variations such as Extended isolation forest and SCiForest. See the
details of these methods in references: Liu, F.T., Ting, K.M. and
Zhou, Z.H. (2008) <doi:10.1109/ICDM.2008.17>, Hariri, S., Kind, M.C.
and Brunner, R.J. (2019) <doi:10.1109/TKDE.2019.2947676>, Liu, F.T.,
Ting, K.M. and Zhou, Z.H. (2010) <doi:10.1007/978-3-642-15883-4_18>,
Guha, S., Mishra, N., Roy, G. and Schrijvers, O. (2016)
<https://proceedings.mlr.press/v48/guha16.html>, Cortes, D. (2021)
<arXiv:2110.13402>. Additionally, Shapley values are used to explain
model inputs and outputs. See details in references: Shapley, L.S.
(1953) <doi:10.1515/9781400881970-018>, Lundberg, S.M. and Lee, S.I.
(2017) <https://dl.acm.org/doi/abs/10.5555/3295222.3295230>, Molnar,
C.  (2020) <ISBN:978-0-244-76852-2>, Štrumbelj, E. and Kononenko, I.
(2014) <doi:10.1007/s10115-013-0679-x>. itsdm also provides functions
to diagnose variable response, analyze variable importance, draw
spatial dependence of variables and examine variable contribution. As
utilities, the package includes a few functions to download
bioclimatic variables including 'WorldClim' version 2.0 (see Fick,
S.E. and Hijmans, R.J. (2017) <doi:10.1002/joc.5086>) and
'CMCC-BioClimInd' (see Noce, S., Caporaso, L. and Santini, M. (2020)
<doi:10.1038/s41597-020-00726-5>.
checkmate, dplyr, ecospat (>= 3.2.1), fastshap, ggplot2,
isotree, methods, ncdf4, outliertree, patchwork, raster, rlang,
ROCit, sf, stars, stats, stringr, tidyselect, utils
Lei Song [aut, cre] (<https://orcid.org/0000-0002-4371-1473>),
Lyndon Estes [ths]

c(
person("Lei", "Song", , "lsong@clarku.edu", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-4371-1473")),
person("Lyndon", "Estes", , "lestes@clarku.edu", role = "ths")
)
checkmate, dplyr, fastshap, ggplot2, isotree, methods, ncdf4,
outliertree, patchwork, raster, rlang, ROCit, sf, stars, stats,
stringr, tidyselect, utils