A method to test genetic linkage with covariates by
regression methods with response IBD sharing for relative
pairs.  Account for correlations of IBD statistics and
covariates for relative pairs within the same pedigree.

Regression Methods for IBD Linkage with Covariates
Method to test genetic linkage with covariates by
regression methods with response IBD sharing for relative
pairs.  Account for correlations of IBD statistics and
covariates for relative pairs within the same pedigree.
R (>= 3.3.1), methods, stats, tools, graphics, utils

person("Magnus Dehli", "Vigeland", email = "m.d.vigeland@medisin.uio.no",
role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9134-4962"))
Simulation of segments shared identical-by-descent (IBD) by
pedigree members. Using sex specific recombination rates along the human
genome (Kong et al. (2010) <doi:10.1038/nature09525>), phased chromosomes
are simulated for all pedigree members. Additional features include calculation
of realised IBD coefficients and plots of IBD segment distributions.
Magnus Dehli Vigeland [aut, cre]
(<https://orcid.org/0000-0002-9134-4962>)

Simulation of segments shared identical-by-descent (IBD) by
pedigree members. Using sex specific recombination rates along the human
genome (Halldorsson et al. (2019) <doi:10.1126/science.aau1043>), phased chromosomes
are simulated for all pedigree members. Additional features include calculation
of realised IBD coefficients and plots of IBD segment distributions.

person(given = "Magnus Dehli",
family = "Vigeland",
role = c("aut", "cre"),
email = "m.d.vigeland@medisin.uio.no",
comment = c(ORCID = "0000-0002-9134-4962"))
Simulation of segments shared identical-by-descent (IBD) by
pedigree members. Using sex specific recombination rates along the
human genome (Halldorsson et al. (2019)
<doi:10.1126/science.aau1043>), phased chromosomes are simulated for
all pedigree members. Applications include calculation of realised
relatedness coefficients and IBD segment distributions. 'ibdsim2' is
part of the 'ped suite' collection of packages for pedigree analysis.
A detailed presentation of the 'ped suite', including a separate
chapter on 'ibdsim2', is available in the book 'Pedigree analysis in
R' (Vigeland, 2021, ISBN:9780128244302). A 'shiny' app for visualising
and comparing IBD distributions is available at
<https://magnusdv.shinyapps.io/ibdsim2-shiny/>.