Calculates complete functional regulation analysis and visualize
the results in a single heatmap. The provided example data is for biological
data but the methodology can be used for large data sets to compare quantitative
entities that can be grouped. For example, a store might divide entities into
cloth, food, car products etc and want to see how sales changes in the groups
after some event. The theoretical background for the calculations are provided
in New insights into functional regulation in MS-based drug profiling, Ana Sofia
Carvalho, Henrik Molina & Rune Matthiesen, Scientific Reports <doi:10.1038/srep18826>.
gplots, grid, methods, parallel, stats, stringr

Copula based imputation method. A semiparametric imputation procedure for missing multivariate data based on conditional copula specifications.

Francesca Marta Lilja Di Lascio
<marta.dilascio@unibz.it>

Antonio Canale [aut, cre], Daniele Durante [ctb], Arianna Falcioni [aut], Luisa Galtarossa [aut], Tommaso Rigon [ctb]
Posterior inference under the convex mixture regression (CoMiRe) models introduced by Canale, Durante, and Dunson (2018) <doi:10.1111/biom.12917>.
Rcpp (>= 1.0.5), KernSmooth, NonpModelCheck, ggplot2, gtools,
mvtnorm, splines2 (>= 0.3.1), truncnorm, rlang

Posterior inference under the convex mixture regression (CoMiRe) models introduced by Canale, Durante, and Dunson (2018) <doi.org/10.1111/biom.12917>.

Correlation Guided Network Integration (CoNI)
c(person(given = "José Manuel",
family = "Monroy Kuhn",
email = "nolozz@gmail.com",
role = c("aut", "cre")),
person(given = "Dominik",
family = "Lutter",
email = "dominik.lutter@helmholtz-muenchen.de",
role = c("ths")),
person(given = "Valentina",
family = "Klaus",
role = c("ctb")))
Integrates two numerical omics data sets from the same samples using partial correlations. The output can be represented as a network, bipartite graph or a hypergraph structure. The method used in the package refers to Klaus et al (2021) <doi:10.1016/j.molmet.2021.101295>.
José Manuel Monroy Kuhn [aut, cre],
Dominik Lutter [ths],
Valentina Klaus [ctb]
José Manuel Monroy Kuhn <nolozz@gmail.com>