Calculates and compares rate differences of continuous
character evolution under Brownian motion and a new set of
Ornstein-Uhlenbeck-based Hansen models that allow the strength
of selection and stochastic motion to vary across selective
regimes.

ape, nloptr, numDeriv, SparseM, corpcor, lattice

ape, nloptr, numDeriv, corpcor, lattice, akima, grDevices,
phytools, phangorn

Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara
<bomeara@utk.edu>

ape, nloptr, numDeriv, corpcor, lattice, grDevices, phytools,
phangorn

Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
numDeriv, corpcor, lattice, grDevices, phytools, phangorn
Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck-based Hansen models that allow the strength of selection and stochastic motion to vary across selective regimes.

Analysis of Evolutionary Rates in an OU Framework

numDeriv, corpcor, lattice, grDevices, phytools, phangorn,
stats

numDeriv, corpcor, lattice, grDevices, phytools, phangorn,
stats, expm, corHMM, Rmpfr

R (>= 3.2.0), ape, nloptr, lattice, grDevices
numDeriv, corpcor, phytools, paleotree, phangorn, stats, expm,
corHMM, Rmpfr

R (>= 3.2.0), ape, nloptr, lattice, grDevices, geiger
Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck based Hansen models that allow the strength of selection and stochastic motion to vary across selective regimes. Beaulieu et al (2012) <doi:10.1111/j.1558-5646.2012.01619.x>.

Estimates rates for continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck based Hansen models that allow both the strength of the pull and stochastic motion to vary across selective regimes. Beaulieu et al (2012) <doi:10.1111/j.1558-5646.2012.01619.x>.

R (>= 3.2.0), ape, corpcor, nloptr, geiger, RColorBrewer
igraph, numDeriv, phytools, paleotree, phangorn, stats, lhs,
interp, grDevices, parallel