R (>= 2.9), Biobase (>= 2.4), snow, qvalue, RankProd,
RColorBrewer, GeneMeta, gplots, genefilter, impute

Karl Kugler, Laurin Mueller, Matthias Wieser
In this package we provide some basic utilities for
performing meta-analysis. We included methods for dealing with
missing values, or measurements with a variance of zero. For
developing or testing meta-analysis methods a mock up data
model is integrated. Additionally did we implement a method for
performing significance based methods proposed by Fisher and
Rhodes. For visualizing the results three methods were added.
Some functions were taken from the GeneMeta and RankProd
packages in order to implement parallel versions of the
existing methods. Please refer to the original authors if you
make use of these implementations.
R (>= 2.10), Biobase (>= 2.4), qvalue, RankProd, RColorBrewer,
GeneMeta, gplots, genefilter, impute

Karl Kugler, Laurin Mueller, Simone Ecker, Armin Graber (with
contributions from Matthias Wieser)
In this package we provide some basic utilities for
performing meta-analysis. Note that from version 1.2 a complete
redesign of MADAM started to take place, so that code from
versions <1.2 will not be compatible with current versions.

MHC Allele-Based Differencing Between Populations
c(person(given = "Martin",
family = "Lysy",
role = c("cre", "aut"),
email = "mlysy@uwaterloo.ca"),
person(given = "Peter W.J.",
family = "Kim",
role = "aut"),
person(given = "Terin",
family = "Robinson",
role = "ctb"))
Tools for the analysis of population differences
using the Major Histocompatibility Complex (MHC) genotypes of samples
having a variable number of alleles (1-4) recorded for each
individual.  A hierarchical Dirichlet-Multinomial model on the
genotype counts is used to pool small samples from multiple
populations for pairwise tests of equality.  Bayesian inference is
implemented via the 'rstan' package.  Bootstrapped and posterior
p-values are provided for chi-squared and likelihood ratio tests of
equal genotype probabilities.
Martin Lysy [cre, aut],
Peter W.J. Kim [aut],
Terin Robinson [ctb]