Incidence Curve Decomposition by Inverting the Renewal Equation
Estimation,  by inverting a renewal equation,
of time-varying reproduction numbers, 7-day seasonality, and restored incidence
curves with festive days bias corrected as described in
Alvarez et al. (2021) <doi:10.1073/pnas.2105112118> and
Alvarez et al. (2022) <doi:10.3390/biology11040540>. 'EpiInvert' can manage
daily incidence data and weekly aggregated incidence data. This version of the
package also includes 'EpiInvertForecast', a learning method for the short time
forecast of the restored incidence curve.

A Bayesian Tool for Near Real-Time Estimation of the
Reproduction Number
person("Oswaldo","Gressani",
email="oswaldo_gressani@hotmail.fr", role=c("aut","cre"),
comment=c(ORCID ="0000-0003-4152-6159"))
Estimation of the instantaneous reproduction number with
Laplacian-P-splines following the methodology of Gressani et al.(2021)
<doi:10.1101/2021.12.02.21267189>. The negative Binomial
distribution is used to model the time series of case counts. Two methods are
available for inference : (1) a sampling-free approach based on a maximum a
posteriori calibration of the hyperparameter vector and (2) a fully stochastic
approach with a Metropolis-within-Gibbs algorithm and Langevin diffusions for
efficient sampling of the posterior distribution.
Oswaldo Gressani [aut, cre] (<https://orcid.org/0000-0003-4152-6159>)

A Bayesian Tool for Approximate Real-Time Estimation of the
Reproduction Number

A Bayesian Tool for Fast and Flexible Estimation of the
Reproduction Number

c( person("Samuel", "Jenness", role=c("cre","aut"),
email="sjenness@uw.edu"))
Mathematical Modeling of Infectious Disease
Tools for building, solving, and plotting mathematical
models of infectious disease.

Tools for building, solving, and plotting mathematical models of
infectious disease.
c( person("Samuel", "Jenness",
role=c("cre","aut"), email="sjenness@uw.edu"),
person("Steven M.","Goodreau",
role=c("aut"), email="goodreau@uw.edu"),
person("Li", "Wang",
role=c("aut"), email="lxwang@uw.edu"),
person("Martina", "Morris",
role=c("aut"), email="morrism@uw.edu"))
deSolve (>= 1.10-6), RColorBrewer, statnet.common
Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Li Wang [aut],
Martina Morris [aut]