GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel,
agricolae, gridExtra, picante, pheatmap, igraph, rgexf, mice,
GGally

c(person("Chi", "Liu", role = c("aut", "cre"), email = "liuchi0426@126.com"),
person("Minjie", "Yao", role = "aut", email = "yaomj@fafu.edu.cn"),
person("Xiangzhen", "Li", role = "aut", email = "lixz@cib.ac.cn"),
person("Paul J.", "McMurdie", role = "ctb", email = "joey711@gmail.com"),
person("Yang", "Cao", role = "ctb", email = "yiluheihei@gmail.com"),
person("James Robert", "White", role = "ctb", email = "whitej@umd.edu"),
person("Stilianos", "Louca", role = "cph", email = "slouca@uoregon.edu"),
person("Nhu H.", "Nguyen", role = "cph", email = "nhnguyen@umn.edu")
)
Chi Liu [aut, cre],
Minjie Yao [aut],
Xiangzhen Li [aut],
Paul J. McMurdie [ctb],
Yang Cao [ctb],
James Robert White [ctb],
Stilianos Louca [cph],
Nhu H. Nguyen [cph]
A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity statistics, beta diversity statistics, differential abundance test and indicator taxon analysis, environmental data analysis, null model analysis, network analysis and functional analysis.
R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr,
tibble, reshape2, scales, grid, ggplot2, boot, agricolae, VGAM,
GUniFrac, picante, randomForest, MASS, RColorBrewer, pheatmap,
ggpubr, gridExtra, ggrepel, ggdendro, Rcpp

R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr,
tibble, reshape2, scales, grid, ggplot2, VGAM, MASS,
RColorBrewer
GUniFrac, ggpubr, randomForest, ggdendro, ggrepel, agricolae,
gridExtra, picante, pheatmap, igraph, tidytree, mice, phyloseq

R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr,
tibble, scales, grid, ggplot2, RColorBrewer
reshape2, GUniFrac, MASS, ggpubr, randomForest, ggdendro,
ggrepel, agricolae, gridExtra, picante, pheatmap, igraph,
rgexf, tidytree, mice, ggtree, phyloseq

c(person("Chi", "Liu", role = c("aut", "cre", "cph"), email = "liuchi0426@126.com"),
person("Minjie", "Yao", role = c("aut", "cph"), email = "yaomj@fafu.edu.cn"),
person("Xiangzhen", "Li", role = "aut", email = "lixz@cib.ac.cn"),
person("Stilianos", "Louca", role = "cph", email = "slouca@uoregon.edu"),
person("Nhu H.", "Nguyen", role = "cph", email = "nhnguyen@umn.edu")
)
Chi Liu [aut, cre, cph],
Minjie Yao [aut, cph],
Xiangzhen Li [aut],
Stilianos Louca [cph],
Nhu H. Nguyen [cph]