Publication Quality Phylogenetic Tree Plots
c(
person("Paul Boutros", role = "cre", email = "PBoutros@mednet.ucla.edu"),
person("Adriana Salcedo", role = "aut"),
person("Dan Knight", role = "aut"),
person("Helena Winata", role = "ctb"))
Generates tree plots with precise branch lengths, gene annotations, and cellular prevalence. The package handles complex tree structures (angles, lengths, etc.) and can be further refined as needed by the user.
R (>= 3.5.0), graphics, grid, gridExtra, gtable,
Paul Boutros [cre],
Adriana Salcedo [aut],
Dan Knight [aut],
Helena Winata [ctb]

c(person("Michal", "Burdukiewicz",
email = "michalburdukiewicz@gmail.com",
comment = c(ORCID = "0000-0001-8926-582X"),
role = c("cre", "aut")),
person("Katarzyna", "Sidorczuk",
email = "sidorczuk.katarzyna17@gmail.com",
role = c("aut"),
comment = c(ORCID = "0000-0001-6576-9054")),
person("Filip", "Pietluch",
email = "fpietluch@gmail.com",
role = c("ctb"),
comment = c(ORCID = "0000-0001-6218-9804")),
person("Dominik", "Rafacz",
email = "dominikrafacz@gmail.com",
role = c("ctb"),
comment = c(ORCID = "0000-0003-0925-1909")),
person("Mateusz", "Bakala",
email = "matibakala@gmail.com",
comment = c(ORCID = "0000-0002-3213-2484"),
role = c("ctb")),
person("Jadwiga", "Słowik",
comment = c(ORCID = "0000-0003-3466-8933"),
email = "jadwiga.slowik5@gmail.com",
role = c("ctb")))
Predicts anticancer peptides using random forests trained on the
n-gram encoded peptides. The implemented algorithm can be accessed from
both the command line and shiny-based GUI. The CancerGram model is too large
for CRAN and it has to be downloaded separately from the repository:
<https://github.com/BioGenies/CancerGramModel>. For more information see:
Burdukiewicz et al. (2020) <doi:10.3390/pharmaceutics12111045>.
biogram, devtools, pbapply, ranger, shiny, stringi, dplyr
Michal Burdukiewicz [cre, aut]
(<https://orcid.org/0000-0001-8926-582X>),
Katarzyna Sidorczuk [aut] (<https://orcid.org/0000-0001-6576-9054>),
Filip Pietluch [ctb] (<https://orcid.org/0000-0001-6218-9804>),
Dominik Rafacz [ctb] (<https://orcid.org/0000-0003-0925-1909>),
Mateusz Bakala [ctb] (<https://orcid.org/0000-0002-3213-2484>),
Jadwiga Słowik [ctb] (<https://orcid.org/0000-0003-3466-8933>)