Simulation of Meiosis in Plant Breeding Research
c(
person("Dominik", "Mueller", email = "dominikmueller64@yahoo.de", role = c("aut", "cre")),
person(c("Karl", "W."), "Broman", email = "kbroman@biostat.wisc.edu", role = "aut"))
Tools for simulation of meiosis in plant breeding research.
knitr, rmarkdown, testthat, covr, pedigree
Dominik Mueller [aut, cre],
Karl W. Broman [aut]

Encodes several methods for performing Mendelian randomization analyses with summarized data. Summarized data on genetic associations with the exposure and with the outcome can be obtained from large consortia. These data can be used for obtaining causal estimates using instrumental variable methods.
knitr, rmarkdown, plotly (>= 3.6.0), ggplot2 (>= 1.0.1),
stargazer (>= 5.2), robustbase (>= 0.92-6)

Encodes several methods for performing Mendelian randomization
analyses with summarized data. Summarized data on genetic associations with the
exposure and with the outcome can be obtained from large consortia. These data
can be used for obtaining causal estimates using instrumental variable methods.

Olena Yavorska <olena.yavorska@ludwig.ox.ac.uk>
James Staley <james.staley@bristol.ac.uk>
knitr, rmarkdown, plotly (>= 3.6.0), ggplot2 (>= 1.0.1),
robustbase (>= 0.92-6), Matrix (>= 1.2), iterpc (>= 0.3), rjson

knitr, rmarkdown, plotly (>= 3.6.0), ggplot2 (>= 1.0.1),
robustbase (>= 0.92-6), Matrix (>= 1.2), iterpc (>= 0.3),
quantreg (>= 5.01), rjson, glmnet

Set of configurable menus built with GTK+ to graphically interface new functions.

Clustering and Visualizing Distance Matrices
Defines the classes used to explore, cluster and
visualize distance matrices, especially those arising from binary data.
methods, stats, utils, graphics, grDevices, KernSmooth,
cluster, Rtsne, ClassDiscovery, Polychrome, dendextend, igraph

methods, stats, utils, graphics, grDevices, KernSmooth,
cluster, Rtsne, ClassDiscovery, Polychrome, dendextend, igraph,
flexmix

methods, stats, graphics, utils, cluster, Rtsne, igraph,
Polychrome, dendextend