methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, caret, dplyr, RColorBrewer,
MASS, irlba, reshape2, gridExtra, gplots, gdata, Rcpp, tclust,
ranger, NMF, dtw, SDMTools, plotly, diffusionMap, Hmisc, tidyr,
ggjoy

methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, caret, dplyr, RColorBrewer,
MASS, irlba, reshape2, gridExtra, gplots, gdata, Rcpp, tclust,
ranger, NMF, dtw, SDMTools, plotly, diffusionMap, Hmisc, tidyr,
ggridges
'RcppExports.R' 'alignment.R' 'seurat.R'
'cluster_determination.R' 'cluster_determination_internal.R'
'cluster_validation.R' 'data.R' 'deprecated_functions.R'
'differential_expression.R'
'differential_expression_internal.R' 'dimensional_reduction.R'
'dimensional_reduction_internal.R'
'dimensional_reduction_utilities.R' 'interaction.R'
'jackstraw.R' 'jackstraw_internal.R' 'multi_modal.R'
'plotting.R' 'plotting_internal.R' 'plotting_utilities.R'
'preprocessing.R' 'preprocessing_internal.R'
'printing_utilities.R' 'scoring.R' 'snn.R' 'spatial.R'
'spatial_internal.R' 'tSNE_project.R' 'utilities.R'
'utilities_internal.R'
testthat, SummarizedExperiment, MAST, DESeq2, MetaDE

methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, caret, dplyr, RColorBrewer,
MASS, irlba, reshape2, gridExtra, gplots, gdata, Rcpp, tclust,
ranger, dtw, SDMTools, plotly, diffusionMap, Hmisc, tidyr,
ggridges, metap

methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, RANN, caret, dplyr,
RColorBrewer, MASS, irlba, reshape2, gridExtra, gplots, gdata,
Rcpp, tclust, ranger, dtw, SDMTools, plotly, diffusionMap,
Hmisc, tidyr, ggridges, metap, lmtest, cluster, fitdistrplus,
png, doSNOW, foreach

c(
person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'aut'),
person(given = 'Andrew', family = 'Butler', email = 'abutler@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0003-3608-0463')),
person(given = 'Paul', family = 'Hoffman', email = 'seuratpackage@gmail.com', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-7693-8957')),
person(given = 'Jeff', family = 'Farrell', email = 'jfarrell@g.harvard.edu', role = 'ctb'),
person(given = 'Shiwei', family = 'Zheng', email = 'szheng@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-6682-6743')),
person(given = 'Christoph', family = 'Hafemeister', email = 'chafemeister@nygenome.org', role = 'ctb', comment = (ORCID = '0000-0001-6365-8254')),
person(given = 'Patrick', family = 'Roelli', email = 'proelli@nygenome.org', role = 'ctb')
)
methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, RANN, caret, dplyr,
RColorBrewer, MASS, irlba, reshape2, gplots, gdata, Rcpp,
tclust, ranger, dtw, SDMTools, plotly, diffusionMap, Hmisc,
tidyr, ggridges, metap, lmtest, cluster, fitdistrplus, png,
doSNOW, reticulate, foreach
'RcppExports.R' 'alignment.R' 'seurat.R' 'conversion.R' 'as.R'
'cluster_determination.R' 'cluster_determination_internal.R'
'cluster_validation.R' 'data.R' 'deprecated_functions.R'
'differential_expression.R'
'differential_expression_internal.R' 'dimensional_reduction.R'
'dimensional_reduction_internal.R'
'dimensional_reduction_utilities.R' 'interaction.R'
'jackstraw.R' 'jackstraw_internal.R' 'multi_modal.R'
'plotting.R' 'plotting_internal.R' 'plotting_utilities.R'
'preprocessing.R' 'preprocessing_internal.R'
'printing_utilities.R' 'scoring.R' 'snn.R' 'spatial.R'
'spatial_internal.R' 'tSNE_project.R' 'utilities.R'
'utilities_internal.R'
testthat, loomR, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2
Rahul Satija [aut],
Andrew Butler [aut] (<https://orcid.org/0000-0003-3608-0463>),
Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>),
Jeff Farrell [ctb],
Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>),
Christoph Hafemeister [ctb] (0000-0001-6365-8254),
Patrick Roelli [ctb]