Create, Modify and Analyse Phylogenetic Trees
c(person("Martin R.", 'Smith',
email="martin.smith@durham.ac.uk",
role=c("aut", "cre", "cph"),
comment=c(ORCID = "0000-0001-5660-1727")),
person(given = "Emmanuel", family="Paradis", role = c("cph"),
comment = c(ORCID = "0000-0003-3092-2199")),
person(given = "Klaus", family="Schliep", role = c("cph"),
comment = c(ORCID = "0000-0003-2941-0161"))
)
Incorporates C/C++ code from: ape by Emmanuel Paradis;
phangorn by Klaus Scheip <doi:10.1093/bioinformatics/btq706>
Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include: generation of trees with specified shapes;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and
analysis of partitions and partition information.
colorspace, phangorn (>= 2.2.1), R.cache
knitr, Rcpp, Rdpack, rmarkdown, shiny, testthat

Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include: generation of trees with specified shapes;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and
analysis of partitions and cladistic information.
bit64, colorspace, phangorn (>= 2.2.1), R.cache

Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.