ape, phangorn, igraph, gmp, ggplot2, ggtree (>= 2.0.0),
RcppAlgos, stats

For a single, known pathogen phylogeny, provides functions for enumeration of the set of compatible epidemic transmission trees, and for uniform sampling from that set. Optional arguments allow for incomplete sampling with a known number of missing individuals, multiple sampling, and known infection time limits. Always assumed are a complete transmission bottleneck and no superinfection or reinfection. See Hall and Colijn <doi:10.1101/160812> for methodology.
ape, phangorn, igraph, gmp, gtools, ggplot2, ggtree (>=
1.14.6), RcppAlgos, stats

This is a package for the subsampling method of robust
estimation of linear regression models

Spatio-Temporal Under-Five Mortality Methods for Estimation
c(
person(given = "Bryan D", family = "Martin", email= "bmartin6@uw.edu", role = c("cre","aut")),
person(given = "Zehang R", family = "Li", email= "lizehang@uw.edu", role = "aut")
)
Provides methods for estimating, projecting, and plotting spatio-temporal
under-five mortality rates, described in Mercer et al. (2015) <doi:10.1214/15-AOAS872>.
RColorBrewer, classInt, maptools, survey, grDevices, graphics,
stats, spdep, survival, ggplot2, sp, utils
Bryan D Martin [cre, aut],
Zehang R Li [aut]

c(
person(given = "Bryan D", family = "Martin", email= "bmartin6@uw.edu", role = c("cre","aut")),
person(given = "Zehang R", family = "Li", email= "lizehang@uw.edu", role = "aut"),
person(given = "Yuan", family = "Hsiao", email = "yahsiao@uw.edu", role = "aut"),
person(given = "Jessica", family = "Godwin", email = "jlg0003@uw.edu", role = "aut"),
person(given = "Jon", family = "Wakefield", email = "jonno@uw.edu", role = "aut"),
person(given = "Samuel J", family = "Clark", email = "work@samclark.net", role = "aut")
)
RColorBrewer, classInt, rgeos, maptools, survey, grDevices,
graphics, stats, spdep, survival, ggplot2, sp, utils, Matrix,
reshape2, pixmap
INLA, knitr, rmarkdown, readstata13, gridExtra, R.rsp
Bryan D Martin [cre, aut],
Zehang R Li [aut],
Yuan Hsiao [aut],
Jessica Godwin [aut],
Jon Wakefield [aut],
Samuel J Clark [aut]