Semi-Supervised Calibration of Risk with Noisy Event Times
person(given = "Yuri",
family = "Ahuja",
role = c("aut", "cre"),
email = "Yuri_Ahuja@hms.harvard.edu")
A consistent, semi-supervised, non-parametric survival curve estimator optimized for efficient use of Electronic Health Record (EHR) data with a limited number of current status labels. See van der Laan and Robins (1997) <doi:10.2307/2670119>.
Matrix, survival, pracma, foreach, doParallel, parallel, Rcpp

Single Cell Oriented Reconstruction of PANDA Individual
Optimized Networks
c(person("Daniel","Osorio", email = "daniecos@uio.no", role = c("aut","cre"), comment = c(ORCID = "0000-0003-4424-8422")),
person("Marieke L.","Kuijjer", email = "marieke.kuijjer@ncmm.uio.no", role = c("aut"), comment = c(ORCID = "0000-0001-6280-3130")))
Constructs gene regulatory networks from single-cell gene expression data using the PANDA (Passing Attributes between Networks for Data Assimilation) algorithm.
cli, methods, irlba, igraph, RANN, Matrix, pbapply,
RhpcBLASctl

Inferring Developmental Chronologies from Single-Cell RNA
Sequencing Data
An accurate and easy tool for performing trajectory inference on
single cells using single-cell RNA sequencing data. In addition, SCORPIUS
provides functions for discovering the most important genes with respect to
the reconstructed trajectory, as well as nice visualisation tools.
Cannoodt et al. (2016) <doi:10.1101/079509>.
c(
person(
"Robrecht",
"Cannoodt",
email = "rcannood@gmail.com",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-3641-729X", github = "rcannood")
),
person(
"Wouter",
"Saelens",
email = "wouter.saelens@ugent.be",
role = c("aut"),
comment = c(ORCID = "0000-0002-7114-6248", github = "zouter")
)
)
dplyr, dynutils, grDevices, ggplot2 (>= 2.0), magrittr, MASS,
mclust, pbapply, pheatmap, princurve (>= 2.0.2), purrr, ranger,
RColorBrewer, reshape2, splines, stats, tidyr, TSP, utils
Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>,
rcannood),
Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)