cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.5-0), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, progressr, RANN,
RColorBrewer, Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18),
reticulate, rlang, ROCR, Rtsne, scales, scattermore (>= 0.7),
sctransform (>= 0.3.5), SeuratObject (>= 4.1.3), shiny,
spatstat.explore, spatstat.geom, stats, tibble, tools, utils,
uwot (>= 0.1.14)
ape, rsvd, testthat, hdf5r, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2, BiocGenerics,
GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, Rfast2,
monocle, Biobase, VGAM, limma, metap, enrichR, mixtools,
ggrastr, data.table, R.utils
Andrew Butler [ctb] (<https://orcid.org/0000-0003-3608-0463>),
Saket Choudhary [ctb] (<https://orcid.org/0000-0001-5202-7633>),
Charlotte Darby [ctb] (<https://orcid.org/0000-0003-2195-5300>),
Jeff Farrell [ctb],
Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>),
Yuhan Hao [ctb] (<https://orcid.org/0000-0002-1810-0822>),
Austin Hartman [ctb] (<https://orcid.org/0000-0001-7278-1852>),
Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>),
Jaison Jain [ctb] (<https://orcid.org/0000-0002-9478-5018>),
Madeline Kowalski [ctb] (<https://orcid.org/0000-0002-5655-7620>),
Efthymia Papalexi [ctb] (<https://orcid.org/0000-0001-5898-694X>),
Patrick Roelli [ctb],
Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>),
Karthik Shekhar [ctb],
Avi Srivastava [ctb] (<https://orcid.org/0000-0001-9798-2079>),
Tim Stuart [ctb] (<https://orcid.org/0000-0002-3044-0897>),
Kristof Torkenczy [ctb] (<https://orcid.org/0000-0002-4869-7957>),
Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>),
Satija Lab and Collaborators [fnd]

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031> for
more details.
grDevices, grid, Matrix (>= 1.2.18), methods, Rcpp (>= 1.0.5),
rlang (>= 0.4.7), sctransform, stats, tools, utils
'RcppExports.R' 'utils.R' 'zzz.R' 'generics.R' 'assay.R'
'command.R' 'data.R' 'default.R' 'jackstraw.R' 'dimreduc.R'
'graph.R' 'neighbor.R' 'spatial.R' 'seurat.R'