stats, graphics, methods, mvtnorm, deSolve, coda

Statistical Inference for Partially Observed Markov Processes
Inference methods for partially observed Markov processes (AKA stochastic dynamical systems, state-space models).
stats, graphics, mvtnorm, deSolve, coda, subplex, nloptr
aaa.R authors.R generics.R eulermultinom.R csnippet.R
pomp-fun.R plugins.R builder.R parmat.R logmeanexp.R
slice-design.R profile-design.R sobol.R bsplines.R sannbox.R
pomp-class.R load.R pomp.R pomp-methods.R rmeasure-pomp.R
rprocess-pomp.R init-state-pomp.R dmeasure-pomp.R
dprocess-pomp.R skeleton-pomp.R dprior-pomp.R rprior-pomp.R
simulate-pomp.R trajectory-pomp.R plot-pomp.R pfilter.R
pfilter-methods.R minim.R traj-match.R bsmc.R bsmc2.R mif.R
mif-methods.R proposals.R pmcmc.R pmcmc-methods.R nlf-funcs.R
nlf-guts.R nlf-objfun.R nlf.R probe.R probe-match.R
basic-probes.R spect.R spect-match.R abc.R abc-methods.R
example.R

c(person(given=c("Aaron","A."),family="King",
role=c("aut","cre"),email="kingaa@umich.edu"),
person(given=c("Edward","L."),family="Ionides",role=c("aut")),
person(given=c("Carles"),family="Breto",role=c("aut")),
person(given=c("Stephen","P."),family="Ellner",role=c("ctb")),
person(given=c("Matthew","J."),family="Ferrari",role=c("ctb")),
person(given=c("Bruce","E."),family="Kendall",role=c("ctb")),
person(given=c("Michael"),family="Lavine",role=c("ctb")),
person(given="Dao",family="Nguyen",role=c("ctb")),
person(given=c("Daniel","C."),family="Reuman",role=c("ctb")),
person(given=c("Helen"),family="Wearing",role=c("ctb")),
person(given=c("Simon","N."),family="Wood",role=c("ctb")),
person(given="Sebastian",family="Funk",role=c("ctb"))
)
Tools for working with partially observed Markov processes (POMPs, AKA stochastic dynamical systems, state-space models).  'pomp' provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods.  It is also a platform for the implementation of new inference methods.
stats, graphics, digest, mvtnorm, deSolve, coda, subplex,
nloptr
magrittr, plyr, reshape2, ggplot2, knitr
For Windows users, Rtools (see
http://cran.r-project.org/bin/windows/Rtools/).
aaa.R authors.R bake.R generics.R eulermultinom.R csnippet.R
pomp-fun.R plugins.R builder.R parmat.R logmeanexp.R
slice-design.R profile-design.R sobol.R bsplines.R sannbox.R
pomp-class.R load.R pomp.R pomp-methods.R rmeasure-pomp.R
rprocess-pomp.R init-state-pomp.R dmeasure-pomp.R
dprocess-pomp.R skeleton-pomp.R dprior-pomp.R rprior-pomp.R
simulate-pomp.R trajectory-pomp.R plot-pomp.R pfilter.R
pfilter-methods.R minim.R traj-match.R bsmc.R bsmc2.R mif.R
mif-methods.R mif2.R mif2-methods.R proposals.R pmcmc.R
pmcmc-methods.R nlf-funcs.R nlf-guts.R nlf-objfun.R nlf.R
probe.R probe-match.R basic-probes.R spect.R spect-match.R
abc.R abc-methods.R covmat.R example.R
Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb]