Multiple Equivalence Tests and Simultaneous Confidence Intervals
Equivalence tests and related confidence intervals for the
comparison of two treatments, simultaneously for one or many
normally distributed, primary response variables (endpoints).
The step-up procedure of Quan et al. (2001) is both applied for
differences and extended to ratios of means. A related
single-step procedure is also available.

Equivalence tests and related confidence intervals for the
comparison of two treatments, simultaneously for one or many normally
distributed, primary response variables (endpoints). The step-up
procedure of Quan et al. (2001) is both applied for differences and
extended to ratios of means. A related single-step procedure is also
available.

Reconstruction of Clones from Integration Site Readouts and
Visualization
c(person(given = "Sebastian",
family = "Wagner",
email = "sebastian.wagner3@tu-dresden.de",
role = c("cre", "aut"),
comment = c(ORCID = "0000-0001-6468-4833")),
person(given = "Christoph",
family = "Baldow",
email = "christoph.baldow@tu-dresden.de",
role = c("aut"),
comment = c(ORCID = "0000-0002-4366-1453")),
person(given = "Ingmar",
family = "Glauche",
email = "ingmar.glauche@tu-dresden.de",
role = c("ths"),
comment = c(ORCID = "0000-0002-2524-1199")))
Sebastian Wagner [cre, aut] (<https://orcid.org/0000-0001-6468-4833>),
Christoph Baldow [aut] (<https://orcid.org/0000-0002-4366-1453>),
Ingmar Glauche [ths] (<https://orcid.org/0000-0002-2524-1199>)
Tools necessary to reconstruct clonal affiliations from
temporally and/or spatially separated measurements of viral
integration sites. For this means it utilizes correlations present
in the relative readouts of the integration sites. Furthermore,
facilities for filtering of the data and visualization of different
steps in the pipeline are provided with the package.
clValid, cluster, clv, dplyr, foreach, ggplot2, igraph, ltm,
plyr, poweRlaw, reshape2, RColorBrewer, rlang, rmutil
knitr, markdown, mclust, testthat, gridExtra