Open-Source Software for 'Omic' Data Analysis and Visualization
A tool for interactive exploration of the results from 'omics'
experiments to facilitate novel discoveries from high-throughput biology. The
software includes R functions for the 'bioinformatician' to deposit study
metadata and the outputs from statistical analyses (e.g. differential
expression, enrichment). These results are then exported to an interactive
JavaScript dashboard that can be interrogated on the user's local machine or
deployed online to be explored by collaborators. The dashboard includes
'sortable' tables, interactive plots including network visualization, and
fine-grained filtering based on statistical significance.
c(
person("Terrence", "Ernst", role = c("aut"),
comment = "Web application"),
person("John", "Blischak", role = c("aut", "cre"),
email = "jdblischak@gmail.com",
comment = c(ORCID = "0000-0003-2634-9879")),
person("Paul", "Nordlund", role = c("aut"),
comment = "Web application"),
person("Justin", "Moore", role = c("aut"),
comment = "UpSet-related functions and web application"),
person("Joe", "Dalen", role = c("aut"),
comment = "Barcode functionality and web application"),
person("Akshay", "Bhamidipati", role = c("aut"),
comment = "Web application"),
person("Brett", "Engelmann", role = c("aut"),
email = "brett.engelmann@abbvie.com"),
person("Marco", "Curado", role = c("aut"),
comment = "Improved plotting capabilities"),
person("Joe", "LoGrasso", role = c("aut"),
comment = "Support for plotly"),
person(given = "AbbVie Inc.", role = c("cph", "fnd"))
)
data.table (>= 1.12.4), graphics, jsonlite, stats, tools,
utils
faviconPlease, ggplot2, opencpu, plotly, tinytest (>= 1.2.3),
ttdo (>= 0.0.6), UpSetR
Terrence Ernst [aut] (Web application),
John Blischak [aut, cre] (<https://orcid.org/0000-0003-2634-9879>),
Paul Nordlund [aut] (Web application),
Justin Moore [aut] (UpSet-related functions and web application),
Joe Dalen [aut] (Barcode functionality and web application),
Akshay Bhamidipati [aut] (Web application),
Brett Engelmann [aut],
Marco Curado [aut] (Improved plotting capabilities),
Joe LoGrasso [aut] (Support for plotly),
AbbVie Inc. [cph, fnd]