Fanny Bonnafous [aut], Alexandra Duhnen [aut], Louise Gody [aut], Olivier Guillaume[aut, cre], Brigitte Mangin [aut], Prune Pegot-Espagnet [aut], Vincent Segura [aut], Bjarni J. Vilhjalmsson [aut]

Fanny Bonnafous [aut], Alexandra Duhnen [aut], Louise Gody [aut], Olivier Guillaume[aut, cre], Brigitte Mangin [aut], Prune Pegot-Espagnet [aut], Vincent Segura [aut], Bjarni J. Vilhjalmsson [aut], Clement Mabire [aut]
Pipeline for Genome-Wide Association Study using Multi-Locus Mixed Model from Segura V, Vilhjálmsson BJ et al. (2012) <doi:10.1038/ng.2314>. The pipeline include detection of associated SNPs with MLMM, model selection by lowest eBIC and markers selection by p-value threshold, estimation of the effects of the SNPs in the selected model and graphical functions.

Fanny Bonnafous [aut], Alexandra Duhnen [aut], Louise Gody [aut], Olivier Guillaume[aut, cre], Brigitte Mangin [aut], Prune Pegot-Espagnet [aut], Vincent Segura [aut], Bjarni J. Vilhjalmsson [aut], Clement Mabire [aut], Timothee Flutre [aut]
Pipeline for Genome-Wide Association Study using Multi-Locus Mixed Model from Segura V, Vilhjálmsson BJ et al. (2012) <doi:10.1038/ng.2314>. The pipeline include detection of associated SNPs with MLMM, model selection by lowest eBIC and p-value threshold, estimation of the effects of the SNPs in the selected model and graphical functions.

ML estimation under multivariate linear mixed models with missing values
Original by Recai Yucel <yucel@schoolph.umass.edu>.
Computational strategies for multivariate linear mixed-effects
models with missing values, Schafer and Yucel (2002), Journal of Computational and Graphical Statistics, 11, 421-442.

The software may be distributed free of charge and
used by anyone if credit is given. It has been tested
fairly well, but it comes with no guarantees and the
authors assume no liability for its use or misuse

ML estimation under multivariate linear mixed models with
missing values
Computational strategies for multivariate linear
mixed-effects models with missing values, Schafer and Yucel
(2002), Journal of Computational and Graphical Statistics, 11,
421-442.