Automated Cleaning of Occurrence Records from Biological
Collections
c(person(given = "Alexander", family = "Zizka", email = "alexander.zizka@bioenv.gu.se",
role = c("aut", "cre")),
person(given = "Daniele", family = "Silvestro", role = c("ctb")))
Automated cleaning of geographic species occurrence records by automated flagging of problems common to biodiversity data from biological collections. Includes automated tests to easily flag (and exclude) records assigned to country or province centroid, the open ocean, the headquarters of the Global Biodiversity Information Facility, urban areas or the location of biodiversity institutions (museums, zoos, botanical gardens, universities). Furthermore identifies per species outlier coordinates, zero coordinates, identical latitude/longitude and invalid coordinates. Also implements an algorithm to identify data sets with a significant proportion of rounded coordinates. Especially suited for large data sets. See <https://github.com/azizka/CoordinateCleaner/wiki> for more details and tutorials.
geosphere, ggplot2, methods, raster, rgeos, rnaturalearth,
stats
Alexander Zizka [aut, cre],
Daniele Silvestro [ctb]

c(person(given = "Alexander", family = "Zizka", email = "alexander.zizka@idiv.de",
role = c("aut", "cre")),
person(given = "Daniele", family = "Silvestro", role = "ctb"),
person(given = "Tobias", family = "Andermann", role = "ctb"),
person(given = "Josue", family = "Azevedo", role = "ctb"),
person(given = "Camila", family = "Duarte Ritter", role = "ctb"),
person(given = "Daniel", family = "Edler", role = "ctb"),
person(given = "Harith", family = "Farooq", role = "ctb"),
person(given = "Andrei", family = "Herdean", role = "ctb"),
person(given = "Maria", family = "Ariza", role = "ctb"),
person(given = "Ruud", family = "Scharn", role = "ctb"),
person(given = "Sten", family = "Svanteson", role = "ctb"),
person(given = "Niklas", family = "Wengstrom", role = "ctb"),
person(given = "Vera", family = "Zizka", role = "ctb"),
person(given = "Alexandre", family ="Antonelli", role = "ctb"),
person("Irene", "Steves", role = "rev",
comment = "Irene reviewed the package for ropensci, see <https://github.com/ropensci/onboarding/issues/210>"),
person("Francisco", "Rodriguez-Sanchez", role = "rev",
comment = "Francisco reviewed the package for ropensci, see <https://github.com/ropensci/onboarding/issues/210>"))
Automated flagging of common spatial and temporal errors in biological and paleontological collection data, for the use in conservation, ecology and paleontology. Includes automated tests to easily flag (and exclude) records assigned to country or province centroid, the open ocean, the headquarters of the Global Biodiversity Information Facility, urban areas or the location of biodiversity institutions (museums, zoos, botanical gardens, universities). Furthermore identifies per species outlier coordinates, zero coordinates, identical latitude/longitude and invalid coordinates. Also implements an algorithm to identify data sets with a significant proportion of rounded coordinates. Especially suited for large data sets. The reference for the methodology is: Zizka et al. (2019) doi:10.1111/2041-210X.13152.
dplyr, geosphere, ggplot2, graphics, methods, raster, rgbif,
rgeos, rgdal, rnaturalearth, stats, sp, tidyselect, utils
Alexander Zizka [aut, cre],
Daniele Silvestro [ctb],
Tobias Andermann [ctb],
Josue Azevedo [ctb],
Camila Duarte Ritter [ctb],
Daniel Edler [ctb],
Harith Farooq [ctb],
Andrei Herdean [ctb],
Maria Ariza [ctb],
Ruud Scharn [ctb],
Sten Svanteson [ctb],
Niklas Wengstrom [ctb],
Vera Zizka [ctb],
Alexandre Antonelli [ctb],
Irene Steves [rev] (Irene reviewed the package for ropensci, see
<https://github.com/ropensci/onboarding/issues/210>),
Francisco Rodriguez-Sanchez [rev] (Francisco reviewed the package for
ropensci, see <https://github.com/ropensci/onboarding/issues/210>)