Encryption wrappers, using low-level support from
'sodium' and 'openssl'.  'cyphr' tries to smooth over some pain
points when using encryption within applications and data analysis
by wrapping around differences in function names and arguments in
different encryption providing packages.  It also provides
high-level wrappers for input/output functions for seamlessly
adding encryption to existing analyses.

c(person("Rich", "FitzJohn", role = c("aut", "cre"),
email = "rich.fitzjohn@gmail.com"),
person("Jai", "Ranganathan", role = "ctb"))
Rich FitzJohn [aut, cre],
Jai Ranganathan [ctb]

getPass, openssl (>= 0.9.9), sodium (>= 1.2.1)

Agent-Based Model for Taenia_solium Transmission and Control
c(person("Brecht", "Devleesschauwer",
role = c("aut", "cre"),
email = "brechtdv@gmail.com"),
person("Uffe Christian", "Braae", role = "aut"))
Brecht Devleesschauwer [aut, cre], Uffe Christian Braae [aut]
The cystiSim package provides an agent-based model for Taenia solium transmission and control. cystiSim was developed within the framework of CYSTINET, the European Network on taeniosis/cysticercosis, COST ACTION TD1302.
magrittr, knitr, graphics, grDevices, stats, utils

Calculates ecological diversity indices for a microbial community

Calculates ecological diversity indices for a microbial
community

Plot Fan Plots for Cytometry Data using 'ggplot2'
person("Yann", "Abraham", email = "yann.abraham@gmail.com",
role = c("aut", "cre"))
An implementation of Fan plots for cytometry data in 'ggplot2'.
For reference see Britton, E.; Fisher, P. & J. Whitley (1998) The Inflation Report Projections: Understanding the Fan Chart
<https://www.bankofengland.co.uk/quarterly-bulletin/1998/q1/the-inflation-report-projections-understanding-the-fan-chart>).
dplyr, reshape2, bodenmiller, knitr, rmarkdown

Given the hypothesis of a bimodal distribution of cells for each
marker, the algorithm constructs a binary tree, the nodes of which are subpopulations of cells.
At each node, observed cells and markers are modeled by both a family of
normal distributions and a family of bimodal normal mixture distributions.
Splitting is done according to a normalized difference of AIC between
the two families.
ggplot2, graphics, igraph, mclust, stats