Sylvain Schmitt, Robin Pouteau, Dimitri Justeau, Florian de Boissieu, Philippe Birnbaum

Sylvain Schmitt, Robin Pouteau, Dimitri Justeau, Florian de Boissieu, Lukas Baumbach, Philippe Birnbaum
'SDM.R' 'Algorithm.SDM.R' 'Ensemble.SDM.R' 'Env.R'
'Occurrences.R' 'PA.select.R' 'SSDM.R' 'Stacked.SDM.R'
'accuracy.R' 'checkargs.R' 'data.values.R' 'ensemble.R'
'modelling.R' 'ensemble_modelling.R' 'optim.thresh.R'
'evaluate.R' 'evaluate.axes.R' 'get_PA.R' 'get_model.R' 'gui.R'
'load_model.R' 'load_occ.R' 'load_var.R' 'mapDiversity.R'
'plot.model.R' 'project.R' 'save.model.R' 'stack_modelling.R'
'stacking.R' 'update.stack.R' 'zzz.R'

Charles Auerbach,PHD Wendy Zeitlin Schudrich,PHD Wurzweiler
School of Social Work
Package to visually and statistically analysis single
system data

R (>= 2.10.0), stats, graphics, utils, tcltk
Package to visually and statistically analyze single
system data

Charles Auerbach,PHD Wendy Zeitlin Schudrich,PHD Wurzweiler School of Social Work
R (>= 2.10.0), stats, graphics, utils, tcltk,psych
Package to visually and statistically analyze single system data

c(person(given = "Charles", family = "Auerbach", role = c("aut", "cre"), email = "auerbach@yu.edu"),
person(given = "Wendy", family = "Zeitlin", role = "aut", email = "Wendy.Zeitlin@yu.edu"))
Functions to visually and statistically analyze single system data.
Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]

R (>= 2.10.0), stats, graphics, utils, tcltk, psych

Visually and statistically analyze single system data

c(person(given = "Charles", family = "Auerbach", role = c("aut", "cre"), email = "auerbach@yu.edu"),
person(given = "Wendy", family = "Zeitlin", role = "aut", email = "zeitlinw@montclair.edu"))

Searching Shared HLA Amino Acid Residue Prevalence
c(person("Livia", "Tran",
role = c("aut", "cre"),
email = "livia.tran@ucsf.edu"),
person("Steven", "Mack",
role= "aut",
email = "steven.mack@ucsf.edu"),
person("Josh", "Bredeweg", role= "ctb"),
person("Dale", "Steinhardt", role= "ctb"))
Processes amino acid alignments produced by the 'IPD-IMGT/HLA (Immuno Polymorphism-ImMunoGeneTics/Human Leukocyte Antigen) Database' to identify user-defined amino acid residue motifs shared across HLA alleles, and calculates the frequencies of those motifs based on HLA allele frequency data. 'SSHAARP' (Searching Shared HLA Amino Acid Residue Prevalence) uses 'Generic Mapping Tools (GMT)' software and the 'GMT' R package to generate global frequency heat maps that illustrate the distribution of each user-defined map around the globe. 'SSHAARP' analyzes the allele frequency data described by Solberg et al. (2008) <doi:10.1016/j.humimm.2008.05.001>, a global set of 497 population samples from 185 published datasets, representing 66,800 individuals total.
data.table, stringr, gtools, BIGDAWG, gmt, DescTools, dplyr,
sessioninfo, filesstrings
Livia Tran [aut, cre],
Steven Mack [aut],
Josh Bredeweg [ctb],
Dale Steinhardt [ctb]