Mathematical models of infectious diseases in humans and animals.
Both, deterministic and stochastic models can be simulated and plotted.
c(person(given='Oswaldo', family='Santos Baquero',
email='oswaldosant@gmail.com', role=c("aut", "cre")),
person(given='Fernando', family='Silveira Marques',
email='fernandosix@gmail.com', role="aut"))
Oswaldo Santos Baquero [aut, cre],
Fernando Silveira Marques [aut]

c(person(given='Oswaldo', family='Santos Baquero',
email='baquero@usp.br', role=c("aut", "cre")),
person(given='Fernando', family='Silveira Marques',
email='fernandosix@gmail.com', role="aut"))

EpiEstim: a package to estimate time varying reproduction
numbers from epidemic curves.
This package provides tools to quantify transmissibility
throughout an epidemic from the analysis of time series of
incidence.

Estimate Time Varying Reproduction Numbers from Epidemic Curves
c(person("Anne", "Cori", email = "a.cori@imperial.ac.uk", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-8443-9162")),
person("Simon", "Cauchemez", role = "ctb"),
person("Neil M.", "Ferguson", role = "ctb", comment = c(ORCID = "0000-0002-1154-8093")),
person("Christophe", "Fraser", role = "ctb", comment = c(ORCID = "0000-0003-2399-9657")),
person("Elisabeth", "Dahlqwist", role = "ctb", comment = c(ORCID = "0000-0001-5797-6803")),
person("P. Alex", "Demarsh", role = "ctb"),
person("Thibaut", "Jombart", role = "ctb", comment = c(ORCID = "0000-0003-2226-8692")),
person("Zhian N.", "Kamvar", role = "ctb", comment = c(ORCID = "0000-0003-1458-7108")),
person("Justin", "Lessler", role = "ctb", comment = c(ORCID = "0000-0002-9741-8109")),
person("Shikun", "Li", role = "ctb"),
person("Jonathan A.", "Polonsky", role = "ctb", comment = c(ORCID = "0000-0002-8634-4255")),
person("Jake", "Stockwin", role = "ctb"),
person("Robin", "Thompson", role = "ctb", comment = c(ORCID = "0000-0001-8545-5212")),
person("Rolina", "van Gaalen", role = "ctb")
)
Tools to quantify transmissibility throughout
an epidemic from the analysis of time series of incidence as described in
Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004)
<doi:10.1093/aje/kwh255>.
coarseDataTools (>= 0.6-4), stats, graphics, reshape2,
ggplot2, gridExtra, fitdistrplus, coda, incidence (>= 1.7.0),
scales, grDevices
testthat, utils, vdiffr, covr, knitr, rmarkdown
Anne Cori [aut, cre] (<https://orcid.org/0000-0002-8443-9162>),
Simon Cauchemez [ctb],
Neil M. Ferguson [ctb] (<https://orcid.org/0000-0002-1154-8093>),
Christophe Fraser [ctb] (<https://orcid.org/0000-0003-2399-9657>),
Elisabeth Dahlqwist [ctb] (<https://orcid.org/0000-0001-5797-6803>),
P. Alex Demarsh [ctb],
Thibaut Jombart [ctb] (<https://orcid.org/0000-0003-2226-8692>),
Zhian N. Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>),
Justin Lessler [ctb] (<https://orcid.org/0000-0002-9741-8109>),
Shikun Li [ctb],
Jonathan A. Polonsky [ctb] (<https://orcid.org/0000-0002-8634-4255>),
Jake Stockwin [ctb],
Robin Thompson [ctb] (<https://orcid.org/0000-0001-8545-5212>),
Rolina van Gaalen [ctb]