c(person("Martin R.", 'Smith',
email="martin.smith@durham.ac.uk",
role=c("aut", "cre", "cph"),
comment=c(ORCID = "0000-0001-5660-1727")),
person(given = "Emmanuel", family="Paradis", role = c("cph"),
comment = c(ORCID = "0000-0003-3092-2199"))
)
Incorporates C/C++ code from 'ape' by Emmanuel Paradis
<doi:10.1093/bioinformatics/bty633>
Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
bit64, colorspace, phangorn (>= 2.2.1), R.cache, Rdpack
knitr, Rcpp, rmarkdown, shiny, testthat, vdiffr
Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>)

c(
person("Martin R.", 'Smith', role = c("aut", "cre", "cph"),
email = "martin.smith@durham.ac.uk",
comment = c(ORCID = "0000-0001-5660-1727")),
person(given = "Emmanuel", family = "Paradis", role = c("cph"),
comment = c(ORCID = "0000-0003-3092-2199"))
)

knitr, Rcpp, rmarkdown, shiny, testthat, vdiffr (>= 1.0.0)

Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
tree rearrangement;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of split support;
calculation of ancestor-descendant relationships,
of 'stemwardness' (Asher & Smith, 2021) <doi:10.1093/sysbio/syab072>,
and of tree balance (Mir et al. 2013) <doi:10.1016/j.mbs.2012.10.005>;
artificial extinction (Asher & Smith, 2021) <doi:10.1093/sysbio/syab072>;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
bit64, colorspace, fastmatch, phangorn (>= 2.2.1), R.cache,
Rdpack (>= 0.7),
knitr, Rcpp, rmarkdown, shiny, testthat (>= 3.0), vdiffr (>=
1.0.0),