Performs network-based source estimation. Different approaches are available: effective distance median (Manitz et al., 2014; <doi:10.1371/currents.outbreaks.f3fdeb08c5b9de7c09ed9cbcef5f01f2>), recursive backtracking (Manitz et al., 2016; <doi:10.1111/rssc.12176>), and centrality-based source estimation (Li et al., 2021; <doi:10.1371/journal.pcbi.1008545>). Additionally, we provide public transportation network data as well as methods for data preparation, source estimation performance analysis and visualization.
igraph, Hmisc, colorspace, mvtnorm, corpcor, plyr

NetPreProc: Network Pre-Processing and normalization.
Giorgio Valentini, Matteo Re -- Universita' degli Studi di
Milano
Package for the pre-processing and normalization of graphs

Giorgio Valentini, Matteo Re -- Universita' degli Studi di Milano
Package for the pre-processing and normalization of graphs.

c(person("Giorgio", "Valentini", role = c("aut", "cre"),
email = "valentini@di.unimi.it"))
Network Pre-Processing and normalization. Methods for normalizing graphs, including Chua normalization, Laplacian normalization, Binary magnification, min-max normalization and others. Methods to sparsify adjacency matrices. Methods for graph pre-processing and for filtering edges of the graph.

Permutation Testing Network Module Preservation Across Datasets
person(given="Scott", family="Ritchie",
email="sritchie73@gmail.com",
role=c("aut", "cre"))
Functions for assessing the replication/preservation of a network
module's topology across datasets through permutation testing.
foreach, Rcpp (>= 0.11), statmod, RhpcBLASctl, abind,
RColorBrewer, utils, stats, graphics, grDevices, ref
A compiler with C++11 support for the thread
library, Requires Rtools >= 33 (i.e. R >= 3.3.0) to build on
Windows.

foreach, Rcpp (>= 0.11), statmod, RhpcBLASctl, abind,
RColorBrewer, utils, stats, graphics, grDevices

Functions for assessing the replication/preservation of a network
module's topology across datasets through permutation testing; Ritchie et al.
(2015) <doi: 10.1016/j.cels.2016.06.012>.