Constructs a Correlated Pseudo-Marginal Sampler
person("Taylor", "Brown", email = "trb5me@virginia.edu",
role = c("aut", "cre"))
The primary function makeCPMSampler() generates a sampler function which performs the correlated pseudo-marginal method of Deligiannidis, Doucet and Pitt (2017) <arXiv:1511.04992>. If the 'rho=' argument of makeCPMSampler() is set to 0, then the generated sampler function performs the original pseudo-marginal method of Andrieu and Roberts (2009) <DOI:10.1214/07-AOS574>. The sampler function is constructed with the user's choice of prior, parameter proposal distribution, and the likelihood approximation scheme. Note that this algorithm is not automatically tuned--each one of these arguments must be carefully chosen.

Obtain and Visualize Regulome-Gene Expression Correlations in
Cancer
Builds a 'SQLite' database file of pre-calculated transcription
factor/microRNA-gene correlations (co-expression) in cancer from the
Cistrome Cancer Liu et al. (2011) <doi:10.1186/gb-2011-12-8-r83> and
'miRCancerdb' databases (in press). Provides custom classes and functions
to query, tidy and plot the correlation data.
person("Mahmoud", "Ahmed",
email = "mahmoud.s.fahmy@students.kasralainy.edu.eg",
role = c("aut", "cre"))
DBI, graphics, httr, RSQLite, UpSetR, VennDiagram, magrittr,
dplyr, ggplot2, ggridges, tidyr, reshape2, purrr, grid, R.utils
knitr, rmarkdown, testthat, covr, dbplyr, clusterProfiler,
igraph, org.Hs.eg.db, readxl, AnnotationDbi, BiocInstaller

DBI, graphics, httr, RSQLite, UpSetR, VennDiagram, magrittr,
dplyr, ggplot2, ggridges, tidyr, reshape2, purrr, grid,
R.utils, AnnotationDbi, org.Hs.eg.db, clusterProfiler
knitr, rmarkdown, testthat, covr, dbplyr, igraph, readxl

DBI, graphics, httr, RSQLite, UpSetR, VennDiagram, ggplot2,
ggridges, grid, R.utils, igraph
knitr, rmarkdown, testthat, covr, readxl, AnnotationDbi,
org.Hs.eg.db, clusterProfiler

person("Mahmoud", "Ahmed",
email = "mahmoud.s.fahmy@students.kasralainy.edu.eg",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-4377-6541"))
Mahmoud Ahmed [aut, cre] (<https://orcid.org/0000-0002-4377-6541>)