An implementation of the reverse ecology framework. Reverse ecology
refers to the use of genomics to study ecology with no a priori assumptions
about the organism(s) under consideration, linking organisms to their
environment. It allows researchers to reconstruct the metabolic networks and
study the ecology of poorly characterized microbial species from their
genomic information, and has substantial potential for microbial community
ecological analysis.
Biobase, Matrix, igraph, XML, stringr, KEGGREST, magrittr,
mmnet, gtools, plyr

An implementation of the reverse ecology framework. Reverse ecology
refers to the use of genomics to study ecology with no a priori assumptions
about the organism(s) under consideration, linking organisms to their
environment. It allows researchers to reconstruct the metabolic networks and
study the ecology of poorly characterized microbial species from their
genomic information, and has substantial potentials for microbial community
ecological analysis.
Matrix, igraph, XML, stringr, magrittr, gtools, plyr

Matrix, igraph, XML, stringr, magrittr, gtools, plyr, purrr,
methods

Visualization and Post-Processing of 'RevBayes' Analyses
c(
person("Carrie", "Tribble",
email = "ctribble09@gmail.com",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-7263-7885")),
person("Michael R.", "May", role = "aut"),
person("William A.", "Freyman", role = "aut"),
person("Michael J.", "Landis", role = "aut"),
person("Lim Jun", "Ying", role = "aut"),
person("Joelle", "Barido-Sottani", role = "aut"),
person("Andrew", "Magee", role = "aut"),
person("Bjorn Tore", "Kopperud", role = "aut"),
person("Sebastian", "Hohna", role = "aut"),
person("Nagashima", "Kengo", role = "ctb"),
person("Schliep", "Klaus", role = "ctb")
)
Processes and visualizes the output of complex phylogenetic analyses from the 'RevBayes' phylogenetic graphical modeling software.
Carrie Tribble [aut, cre] (<https://orcid.org/0000-0001-7263-7885>),
Michael R. May [aut],
William A. Freyman [aut],
Michael J. Landis [aut],
Lim Jun Ying [aut],
Joelle Barido-Sottani [aut],
Andrew Magee [aut],
Bjorn Tore Kopperud [aut],
Sebastian Hohna [aut],
Nagashima Kengo [ctb],
Schliep Klaus [ctb]