R functions and data from Chapter 5 of 'Statistical Methods for
Financial Engineering'
R functions and data from Chapter 5 of 'Statistical
Methods for Financial Engineering', by Bruno Remillard, CRC
Press, (2013).

Filtering Algorithms for the State Space Model on the Stiefel
Manifold
Provides the filtering algorithms for the state space model on the Stiefel manifold.

Filtering Algorithms for the State Space Models on the Stiefel
Manifold
Provides the filtering algorithms for the state space models on the Stiefel manifold as well as the corresponding sampling algorithms for uniform, vector Langevin-Bingham and matrix Langevin-Bingham distributions on the Stiefel manifold.

Companion to \emph{Statistical Modelling in R}
Murray Aitkin, Brian Francis, John Hinde, Ross Darnell
<ross.darnell@csiro.au>
lattice, foreign, gdata, car, dglm, gnm, MASS, npmlreg,
survival
This package accompanies Aitkin et al, Statistical
Modelling in R, OUP, 2009. The package contains some functions
and datasets used in the text.

Data Structure and Manipulations Tool for Host and Viral
Population
c(person("Jean-Francois", "Rey", role = c("aut", "cre"), email = "jean-francois.rey@inra.fr"))
Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID).
It allow sequence-space-time host and viral population data storage, indexation and querying.
'Class-Host.R' 'Class-ViralPop.R' 'Methods-Host.R'
'Methods-ViralPop.R' 'demo.R' 'diversity.R' 'index.R'
'SMITIDstruct.R'

'Class-Host.R' 'Class-ViralPop.R' 'Methods-Host.R'
'Methods-ViralPop.R' 'Methods-time.R' 'SMITIDstruct.R' 'demo.R'
'diversity.R' 'index.R'

Visualize Data for Host and Viral Population from 'SMITIDstruct'
using HTMLwidgets
person("Jean-Francois", "Rey", email = "jean-francois.rey@inra.fr", role = c("aut", "cre"))
Visualisation tools for 'SMITIDstruct' package.
Allow to visualize host timeline, transmission tree, index diversities
and variant graph using HTMLwidgets. It mainly using D3JS javascript framework.

c(person("Jean-Francois", "Rey", email = "jean-francois.rey@inra.fr", role = c("aut", "cre")),
person("Julien", "Boge", email = "julien.boge.u@gmail.com", role = "ctb"))
Jean-Francois Rey [aut, cre],
Julien Boge [ctb]