Detect abrupt changes in time series with local fluctuations as a random walk process and autocorrelated noise as an AR(1) process. See Romano, G., Rigaill, G., Runge, V., Fearnhead, P. (2021) <doi:10.1080/01621459.2021.1909598>.

Estimates Pseudotimes for Single Cell Expression Data
Implements the DeLorean model to estimate pseudotimes for
single cell expression data. The DeLorean model uses a Gaussian process
latent variable model to model uncertainty in the capture time of
cross-sectional data.
rstan (>= 2.9.0), dplyr (>= 0.4.1.9000), reshape2 (>= 1.4),
stringr (>= 0.6.2), ggplot2 (>= 1.0.0), MASS (>= 7.3), broom,
coda, parallel, functional, kernlab, fastICA, seriation,
memoise
knitr (>= 1.8), knitcitations, rmarkdown, formatR, extrafont,
testthat, svglite, fields, VGAM

rstan (>= 2.9.0), dplyr (>= 0.4.3), reshape2 (>= 1.4), stringr
(>= 0.6.2), ggplot2 (>= 1.0.0), MASS (>= 7.3), broom, coda,
parallel, functional, kernlab, fastICA, seriation, memoise

rstan (>= 2.10.1), dplyr (>= 0.4.3), reshape2 (>= 1.4),
stringr (>= 0.6.2), ggplot2 (>= 1.0.0), MASS (>= 7.3), broom,
coda, parallel, functional, kernlab, fastICA, seriation,
memoise

rstan (>= 2.12.1), dplyr (>= 0.4.3), reshape2 (>= 1.4),
stringr (>= 0.6.2), ggplot2 (>= 1.0.0), MASS (>= 7.3), broom,
coda, parallel, functional, kernlab, fastICA, seriation,
memoise

rstan (>= 2.15.1), dplyr (>= 0.4.3), reshape2 (>= 1.4),
stringr (>= 0.6.2), ggplot2 (>= 1.0.0), MASS (>= 7.3), broom,
coda, parallel, functional, kernlab, fastICA, seriation,
memoise
knitr (>= 1.8), knitcitations, rmarkdown, formatR, extrafont,
testthat, svglite, VGAM

Implements the DeLorean model (Reid & Wernisch (2016)
<doi:10.1093/bioinformatics/btw372>) to estimate pseudotimes for
single cell expression data. The DeLorean model uses a Gaussian process
latent variable model to model uncertainty in the capture time of
cross-sectional data.

rstan (>= 2.18.1), rstantools (>= 1.5.1), dplyr (>= 0.4.3),
reshape2 (>= 1.4), stringr (>= 0.6.2), ggplot2 (>= 1.0.0), MASS
(>= 7.3), broom, coda, parallel, functional, kernlab, fastICA,
seriation, lattice, memoise