c(person("Klaus", "Schliep", email="klaus.schliep@gmail.com", role = c("aut", "cre")),
person("Emmanuel", "Paradis", role = c("aut")),
person("Leonardo", "de Oliveira Martins", role = c("aut")),
person("Alastair", "Potts", role = c("aut")),
person("Tim W.", "White", role = c("aut")),
person("Cyrill", "Stachniss", role = c("ctb")),
person("Michelle", "Kendall", email="m.kendall@imperial.ac.uk", role = c("ctb")))
quadprog, igraph (>= 1.0), Matrix, parallel, methods, utils,
stats, graphics, grDevices, fastmatch, magrittr, Rcpp (>=
0.12.0)
Klaus Schliep [aut, cre],
Emmanuel Paradis [aut],
Leonardo de Oliveira Martins [aut],
Alastair Potts [aut],
Tim W. White [aut],
Cyrill Stachniss [ctb],
Michelle Kendall [ctb]

c(person(given = "Klaus",
family = "Schliep",
role = c("aut", "cre"),
email = "klaus.schliep@gmail.com",
comment = c(ORCID = "0000-0003-2941-0161")),
person(given = "Emmanuel",
family = "Paradis",
role = "aut",
comment = c(ORCID = "0000-0003-3092-2199")),
person(given = "Leonardo",
family = "de Oliveira Martins",
role = "aut",
comment = c(ORCID = "0000-0001-5247-1320")),
person(given = "Alastair",
family = "Potts",
role = "aut"),
person(given = "Tim W.",
family = "White",
role = "aut"),
person(given = "Cyrill",
family = "Stachniss",
role = "ctb"),
person(given = "Michelle",
family = "Kendall",
role = "ctb",
email = "m.kendall@imperial.ac.uk"),
person(given = "Keren",
family = "Halabi",
role = "ctb"),
person(given = "Richel",
family = "Bilderbeek",
role = "ctb"),
person(given = "Kristin",
family = "Winchell",
role = "ctb"),
person(given = "Liam",
family = "Revell",
role = "ctb"),
person(given = "Mike",
family = "Gilchrist",
role = "ctb"),
person(given = "Jeremy",
family = "Beaulieu",
role = "ctb"),
person(given = "Brian",
family = "O'Meara",
role = "ctb"),
person(given = "Long",
family = "Qu",
role = "ctb"))
Allows for estimation of phylogenetic trees and networks
using Maximum Likelihood, Maximum Parsimony, distance methods and
Hadamard conjugation (Schliep 2011). Offers methods for tree comparison,
model selection and visualization of phylogenetic networks as described in
Schliep et al. (2017).
digest, fastmatch, generics, graphics, grDevices, igraph (>=
1.0), Matrix, methods, parallel, quadprog, Rcpp, stats, utils
Biostrings, knitr, magick, prettydoc, rgl, rmarkdown, seqinr,
seqLogo, tinytest, xtable
Klaus Schliep [aut, cre] (<https://orcid.org/0000-0003-2941-0161>),
Emmanuel Paradis [aut] (<https://orcid.org/0000-0003-3092-2199>),
Leonardo de Oliveira Martins [aut]
(<https://orcid.org/0000-0001-5247-1320>),
Alastair Potts [aut],
Tim W. White [aut],
Cyrill Stachniss [ctb],
Michelle Kendall [ctb],
Keren Halabi [ctb],
Richel Bilderbeek [ctb],
Kristin Winchell [ctb],
Liam Revell [ctb],
Mike Gilchrist [ctb],
Jeremy Beaulieu [ctb],
Brian O'Meara [ctb],
Long Qu [ctb]