Construction of Genetic Maps in Experimental Crosses: Full-Sib,
RILs, F2 and Backcrosses
Analysis of molecular marker data from model (backcrosses,
F2 and recombinant inbred lines) and non-model systems (i. e.
outcrossing species). For the later, it allows statistical
analysis by simultaneously estimating linkage and linkage
phases (genetic map construction) according to Wu et al. (2002)
<doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint
approaches using hidden Markov models.
c(person("Gabriel", "Margarido", role = "aut", email =
"gramarga@usp.br"), person("Marcelo", "Mollinari", role =
"aut", email = "mmollina@usp.br"), person("Karl",
"Broman", role = "ctb", email = "kbroman@biostat.wisc.edu"),
person("Rodrigo", "Amadeu", role = "ctb", email = "rodrigo.amadeu@usp.br"),
person("Cristiane", "Taniguti", role=c("ctb", "cre"), email="chtaniguti@usp.br"),
person("Augusto", "Garcia", role = c("aut", "ctb"), email =
"augusto.garcia@usp.br"))
Gabriel Margarido [aut], Marcelo Mollinari [aut], Karl
Broman [ctb], Rodrigo Amadeu [ctb], Cristiane Taniguti [ctb, cre], Augusto Garcia [aut, ctb]

c(person("Gabriel", "Margarido", role = "aut", email =
"gramarga@usp.br"), person("Marcelo", "Mollinari", role =
"aut", email = "mmollina@usp.br"), person("Karl",
"Broman", role = "ctb", email = "kbroman@biostat.wisc.edu"),
person("Rodrigo", "Amadeu", role = "ctb", email = "rodrigo.amadeu@usp.br"),
person("Cristiane", "Taniguti", role=c("ctb", "cre"), email="chtaniguti@usp.br"),
person("Augusto", "Garcia", role = c("aut", "ctb"), email =
"augusto.garcia@usp.br"), person("Getulio", "Ferreira", role="ctb", email="getulio.caifer@usp.br"))
Gabriel Margarido [aut],
Marcelo Mollinari [aut],
Karl Broman [ctb],
Rodrigo Amadeu [ctb],
Cristiane Taniguti [ctb, cre],
Augusto Garcia [aut, ctb],
Getulio Ferreira [ctb]
ggplot2 (>= 2.2.1), plotly (>= 4.7.1), reshape2 (>= 1.4.1),
Rcpp (>= 0.10.5), graphics, methods, stats, utils, grDevices,
MDSMap
qtl (>= 1.36-6), knitr (>= 1.10), rmarkdown, htmlwidgets,
vcfR (>= 1.6.0),