rmarkdown, knitr, covr, testthat (>= 2.99), ragg, vdiffr,
rstantools

Genetic Data Manipulation (Quality Control, GRM and LD
Computations, PCA), Linear Mixed Models (AIREML Algorithm),
Association Testing
Manipulation of genetic data (SNPs), computation of Genetic Relationship Matrix, Linkage Disequilibrium, etc. Efficient algorithms for Linear Mixed Model (AIREML, diagonalisation trick).
R (>= 2.10), Rcpp, RcppParallel, methods, WhopGenome,
LDheatmap

Manipulation of genetic data (SNPs), computation of Genetic Relationship Matrix, Linkage Disequilibrium, etc. Efficient algorithms for Linear Mixed Model (AIREML, diagonalization trick).

Genetic Data Manipulation (Quality Control, GRM and LD
Computations, PCA), Linear and Logistic Mixed Models (AIREML
Algorithm), Association Testing

Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models

c( person("Hervé", "Perdry", role = c("cre", "cph"), email = "herve.perdry@u-psud.fr"),
person("Claire", "Dandine-Roulland", role = c("aut", "cph")),
person("Deepak", "Bandyopadhyay", role = "cph", comment = "C++ gzstream class" ), # Deepak & Lutz for gzstream class
person("Lutz", "Kettner", role = "cph", comment = "C++ gzstream class" ) )
Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML) .
Hervé Perdry [cre, cph],
Claire Dandine-Roulland [aut, cph],
Deepak Bandyopadhyay [cph] (C++ gzstream class),
Lutz Kettner [cph] (C++ gzstream class)

c( person("Hervé", "Perdry", role = c("cre", "aut", "cph"), email = "herve.perdry@u-psud.fr"),
person("Claire", "Dandine-Roulland", role = c("aut", "cph")),
person("Deepak", "Bandyopadhyay", role = "cph", comment = "C++ gzstream class" ), # Deepak & Lutz for gzstream class
person("Lutz", "Kettner", role = "cph", comment = "C++ gzstream class" ) )
Hervé Perdry [cre, aut, cph],
Claire Dandine-Roulland [aut, cph],
Deepak Bandyopadhyay [cph] (C++ gzstream class),
Lutz Kettner [cph] (C++ gzstream class)

Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML). Dandine et al <doi:10.1159/000488519>.