superpc, glmnet, matrixStats, survminer, survival, rms, tidyr,
pls, Rdpack(>= 0.11-0), methods, stats, gplots, ggplot2

superpc, glmnet, matrixStats, survminer, survival, rms, tidyr,
pls, Rdpack, methods, stats, ggplot2, dplyr
Olajumoke Evangelina Owokotomo [aut, cre],
Ziv Shkedy [ctb]

Basic Functions to Investigate Metabolomics Data Matrices
A set of functions to investigate raw data from (metabol)omics experiments intended to be used on a raw data matrix, i.e. following peak picking and signal deconvolution. Functions can be used to normalize data, detect biomarkers and perform sample classification.
C50, caret, e1071, mixOmics, pcaMethods, plyr, rpart, rattle

C50, caret, e1071, mixOmics, pcaMethods, plyr, rpart, ropls,
rlang

A set of functions to investigate raw data from (metabol)omics experiments intended to be used on a raw data matrix, i.e. following peak picking and signal deconvolution. Functions can be used to normalize data, detect biomarkers and perform sample classification. A detailed description of best practice usage may be found in the publication <https://link.springer.com/protocol/10.1007/978-1-4939-7819-9_20>.
C50, caret, e1071, mixOmics, pcaMethods, plyr, rpart, rlang

Graphical User Interface for the Metabonomic Analysis (Baseline, Normalization, Peak Detection,
PCA, PLS, Nearest Neigbourgt, Neural Network) developed to make easy this data analysis.
tcltk, tcltk2, tkrplot, robustbase, mvoutlier, MASS, gpls, pls, splines, class, nnet, AMORE,
neural, caMassClass, clusterSim, hddplot, scatterplot3d, relimp

Jose L. Izquierdo <izquierdo@ieb.ucm.es> Instituto de Estudios Biofuncionales(U.C.M.).
tcltk, tcltk2, tkrplot, robustbase, PROcess, MASS, gpls, pls, splines, class, nnet, AMORE,
neural, caMassClass, clusterSim, hddplot, scatterplot3d, relimp

tcltk, tcltk2, tkrplot, robustbase, PROcess, MASS, gpls, pls, splines, class, nnet, AMORE,
neural, caMassClass, clusterSim, hddplot, scatterplot3d, relimp, Icens, FTICRMS

tcltk, tcltk2, tkrplot, robustbase, PROcess, MASS, gpls, pls, splines, class, nnet, AMORE,
neural, caMassClass, clusterSim, hddplot, scatterplot3d, relimp, Icens, FTICRMS, waved