PTE and RP for Optimally-Transformed Surrogate
c(person("Layla", "Parast", role = c("cre"), email = "parast@austin.utexas.edu"), person("Xuan", "Wang", role = c("aut")))
Evaluates the strength of a surrogate marker by estimating the proportion of treatment effect explained (PTE) and relative power(RP) for the optimally-transformed version of the surrogate.  Details available in Wang et al (2022) <arXiv:2209.08414>.

c(person("Taiane Schaedler","Prass",
email = "taianeprass@gmail.com",
role = c("aut","cre","com"),
comment = c(ORCID="0000-0003-3136-909X")),
person("Jonas Hendler","Carlos",
email = "jonashendler@gmail.com",
role = c("aut")),
person("Cleiton Guollo","Taufemback",
email = "taufemback.cg@gmail.com",
role = c("aut")))
A collection of functions to simulate, estimate and forecast a wide range of regression based dynamic models for positive time series.
This package implements the results presented in Prass, T.S.; Carlos, J.H.; Taufemback, C.G. and Pumi, G. (2022). "Positive Time Series Regression" <arXiv:2201.03667>.
Taiane Schaedler Prass [aut, cre, com]
(<https://orcid.org/0000-0003-3136-909X>),
Jonas Hendler Carlos [aut],
Cleiton Guollo Taufemback [aut]

Quality Report Generation for MaxQuant Results
Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (see <http://www.maxquant.org>).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.
data.table, ggplot2, ggdendro, graphics, grid, gridExtra,
grDevices, gtable, methods, plyr, proto, RColorBrewer,
reshape2, rmarkdown, seqinr, stats, utils, yaml

pandoc (http://pandoc.org) for building Vignettes
and output reports as HTML

data.table, ggplot2, ggdendro, graphics, grid, gridExtra,
grDevices, gtable, kableExtra, knitr (>= 1.10), methods, plyr,
proto, RColorBrewer, reshape2, rmarkdown, seqinr, stats, utils,
yaml