A suite of R routines for the analysis of indirectly
measured haplotypes. The statistical methods assume that all
subjects are unrelated and that haplotypes are ambiguous (due
to unknown linkage phase of the genetic markers). The main
functions are: haplo.em, haplo.glm, haplo.score, haplo.power,
and seqhap.

A suite of R routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em, haplo.glm, haplo.score, haplo.power, and seqhap; all of which have detailed examples in doc/manualHaploStats.pdf.

Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em(), haplo.glm(), haplo.score(), and haplo.power(); all of which have detailed examples in the vignette.

R (>= 3.5.0), methods, stats, graphics, arsenal

I. Y. Zhbannikov, K. G. Arbeev, A. I. Yashin
A set of utilities for querying
Haploreg <http://archive.broadinstitute.org/mammals/haploreg/haploreg.php>
and RegulomeDB <http://www.regulomedb.org> web-based tools. The package connects to
Haploreg or RegulomeDB, searches and downloads results, without
opening web pages, directly from R environment.
Results are stored in a data frame that can be directly used in various
kinds of downstream analyses.

A set of utilities for querying
HaploReg <http://archive.broadinstitute.org/mammals/haploreg/haploreg.php>
and RegulomeDB <http://www.regulomedb.org> web-based tools. The package connects to
Haploreg or RegulomeDB, searches and downloads results, without
opening web pages, directly from R environment.
Results are stored in a data frame that can be directly used in various
kinds of downstream analyses.

c(person(c("Ilya", "Y."), "Zhbannikov", email = "ilya.zhbannikov@duke.edu", role = c("aut", "cre")),
person("Konstantin", "Arbeev", role = c("ctb"), comment = "Konstantin supervised the technical/software development."),
person("Anatoliy", "Yashin", role = c("ctb"), comment = "Anatoliy supervised the technical/software development and is a Principal Invesigator of this project"))
A set of utilities for querying
HaploReg <http://archive.broadinstitute.org/mammals/haploreg/haploreg.php>
and RegulomeDB <http://www.regulomedb.org> web-based tools. The package connects to
HaploReg or RegulomeDB, searches and downloads results, without
opening web pages, directly from R environment.
Results are stored in a data frame that can be directly used in various
kinds of downstream analyses.
Ilya Y. Zhbannikov [aut, cre],
Konstantin Arbeev [ctb] (Konstantin supervised the technical/software
development.),
Anatoliy Yashin [ctb] (Anatoliy supervised the technical/software
development and is a Principal Invesigator of this project)