This package contains functions for normalisation,differentially analysis of microarray data and others functions implementing recent methods developed by the Statistic and Genom Team from UMR 518 AgroParisTech/INRA Appl. Math. Comput. Sc.

This package contains functions for
normalisation,differentially analysis of microarray data and
others functions implementing recent methods developed by the
Statistic and Genom Team from UMR 518 AgroParisTech/INRA Appl.
Math. Comput. Sc.

person("Julie", "Aubert", email = "julie.aubert@agroparistech.fr", role = c("aut", "cre"))
Functions for normalisation, differentially analysis of microarray data and local False Discovery Rate.

Post-Processing for the Method of Anchored Distributions
Supplements the 'MAD#' software (see <http://mad.codeplex.com/>,
or Osorio-Murillo, et al (2015) <doi:10.1016/j.envsoft.2015.01.002>) that
implements the Method of Anchored Distributions for inferring geostatistical
parameters (see Rubin, et al (2010) <doi:10.1029/2009WR008799>). Reads 'MAD#'
result databases, performs dimension reduction on inversion data, calculates
likelihoods and posteriors, and tests for convergence. Also generates plots
to summarize results.
np, RSQLite, DBI, methods, graphics, stats, reshape2, Rmisc,
ggplot2, plyr, dplyr
'anchoredDistr.R' 'MADproject.R' 'calcLikelihood.R'
'calcPosterior.R' 'data.R' 'plot.R' 'print.R' 'readMAD.R'
'reduceData.R' 'test_convergence.R'

Supplements the 'MAD#' software (see <http://mad.codeplex.com/>,
or Osorio-Murillo, et al. (2015) <doi:10.1016/j.envsoft.2015.01.002>) that
implements the Method of Anchored Distributions for inferring geostatistical
parameters (see Rubin, et al. (2010) <doi:10.1029/2009WR008799>). Reads 'MAD#'
result databases, performs dimension reduction on inversion data, calculates
likelihoods and posteriors, and tests for convergence. Also generates plots
to summarize results.
np, RSQLite, DBI, methods, stats, reshape2, Rmisc, ggplot2,
plyr, dplyr

Statistical analysis of surveys with anchoring vignettes
Wand, Jonathan and Gary King, and Olivia Lau
Tools for analyzing survey responses with anchors.