Detecting Epistatic Selection with Partially Observed Genotype
Data
Pariya Behrouzi, Danny Arends and Ernst C. Wit
R (>= 3.1.0), Matrix, glasso, tmvtnorm, igraph, parallel
An efficient multi-core package to reconstruct an underlying network of
genomic signatures of high-dimensional epistatic selection from
partially observed genotype data. The phenotype that we consider is viability.
The network captures the conditional dependent short- and long-range linkage
disequilibrium structure of genomes and thus reveals aberrant marker-marker
associations that are due to epistatic selection. We target on high-dimensional
genotype data where number of variables (markers) is larger than number of
sample sizes (p >> n). The computations is memory-optimized using the sparse
matrix output.

Flexible Contingency Tables for Epidemiology
Builds contingency tables that cross-tabulate multiple
categorical variables and also calculates various summary measures.
Export to a variety of formats is supported, including: 'HTML',
'LaTeX', and 'Excel'.

Create HTML Tables in the Style Used in Epidemiological Papers
person("Rasmus", "Larsen", email = "rasmushertzumlarsen@gmail.com",
role = c("aut", "cre"))
Functions for creating publication ready tables in HTML format,
commonly used in epidemiological publications. This includes descriptive
tables of  frequencies and percentages, and also analytical tables
presenting regression models.

A package of analytic tools for epidemiologists.

EpiTools: R Package for Epidemiologic Data and Graphics

c(person("Tomas J.", "Aragon", role = "aut",
email = "aragon@berkeley.edu"), person("Michael P.",
"Fay", role = "ctb", email = "mfay@niaid.nih.gov"),
person("Daniel", "Wollschlaeger", role = "ctb", email =
"dwoll@psychologie.uni-kiel.de"),
person("Adam", "Omidpanah", role = c("cre", "ctb"), email =
"adam.omidpanah@wsu.edu"))
Tools for training and practicing epidemiologists including methods for two-way and multi-way contingency tables.
Tomas J. Aragon [aut],
Michael P. Fay [ctb],
Daniel Wollschlaeger [ctb],
Adam Omidpanah [cre, ctb]