Vanesa Balboa-Barreiro, Jacobo de Una-Alvarez <jacobo@uvigo.es>
and Luis Meira-Machado <lmachado@math.uminho.pt>
Estimation of transition probabilities for the illness-death model. Both the Aalen-Johansen estimator for a Markov model and a novel non-Markovian estimator by de Una-Alvarez and Meira-Machado (2015) <DOI:10.1111/biom.12288> are included.

Estimation of transition probabilities for the illness-death model. Both the Aalen-Johansen estimator for a Markov model and a novel non-Markovian estimator by de Una-Alvarez and Meira-Machado (2015) <doi:10.1111/biom.12288>, see also Balboa and de Una-Alvarez (2018) <doi:10.18637/jss.v083.i10>, are included.

Classification using time-course gene expression data,
described in the following paper: Zhang Y, Tibshirani RJ, Davis
RW. Classification of patients from time-course gene
expression. Biostatistics 2012

Variable Selection via Threshold Partial Correlation
c(
person("Cynthia", "Shao", email = "cynyu.shao@gmail.com", role = c("aut","trl","cre")),
person("Runze", "Li",  role = "aut"))
A threshold partial correlation approach to selecting
important variables in linear models of L. and others (2017) at
<doi:10.5705/ss.202015.0473>, and in partial linear models
of L. and others (2018) at <doi:10.1016/j.jmva.2018.06.005>.
This package also extends the PC-simple algorithm of
B. and others (2010) at <doi:10.1093/biomet/asq008> to
partial linear models.
Cynthia Shao [aut, trl, cre],
Runze Li [aut]

Methods for Measuring Functional Diversity Based on Trait
Probability Density
Tools to calculate trait probability density functions (TPD) at
any scale (e.g. populations, species, communities). TPD functions are used to compute
several indices of functional diversity, as well as its partition across scales.
These indices constitute a unified framework that incorporates the underlying
probabilistic nature of trait distributions into uni- or multidimensional
functional trait-based studies. See Carmona et al. (2016) <doi:10.1016/j.tree.2016.02.003> for
further information.
gridExtra (>= 0.9.1), mvtnorm (>= 0.8), graphics, stats