Functions and S4 methods to create and manage discrete time Markov
chains more easily. In addition functions to perform statistical (fitting
and drawing random variates) and probabilistic (analysis of their structural
proprieties) analysis are provided. See Spedicato (2017) <doi.org/10.32614/RJ-2017-036>.
knitr, testthat, diagram, DiagrammeR, msm, Rsolnp, rmarkdown,
ctmcd, bookdown, rticles

Functions and S4 methods to create and manage discrete time Markov
chains more easily. In addition functions to perform statistical (fitting
and drawing random variates) and probabilistic (analysis of their structural
proprieties) analysis are provided. See Spedicato (2017) <doi:10.32614/RJ-2017-036>.

igraph, Matrix, expm, stats4, parallel, Rcpp (>= 1.0.2),
RcppParallel, utils, stats, grDevices

Multivariate Analysis Based on Relative Likelihoods
Functions provided allow data simulation; construction of weighted relative likelihood functions; clustering and principal component analysis based on weighted relative likelihood functions.

Import, plot and analyze bathymetric and topographic data
R (>= 2.10), RSQLite, gdistance, geosphere

R (>= 2.10), RSQLite, gdistance, geosphere, sp, raster

RSQLite, gdistance, geosphere, sp, raster, ncdf

RSQLite, gdistance, geosphere, sp, raster, ncdf, plotrix,
shape

Eric Pante, Benoit Simon-Bouhet, and Jean-Olivier Irisson
DBI, RSQLite, gdistance, geosphere, sp, raster, ncdf, plotrix,
shape, reshape2, adehabitatMA

Import, Plot and Analyze Bathymetric and Topographic Data
DBI, RSQLite, gdistance, geosphere, sp, raster, ncdf, plotrix,
shape, reshape2, adehabitatMA, ggplot2
Import xyz data from the NOAA, GEBCO and other sources, plot xyz data to prepare publication-ready figures, analyze xyz data to extract transects, get depth / altitude based on geographical coordinates, or calculate z-constrained least-cost paths.

DBI, RSQLite, gdistance, geosphere, sp, raster, ncdf, plotrix,
shape, reshape2, adehabitatMA, ggplot2, methods

DBI, RSQLite, gdistance, geosphere, sp, raster, ncdf4,
plotrix, shape, reshape2, adehabitatMA, ggplot2, methods