Approximate Bayesian Computations for Phylogenetic Comparative
Methods
Krzysztof Bartoszek <krzbar@protonmail.ch>, Pietro Lio'
Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2018) <arXiv:1812.03715>.
ape (>= 3.0.6), distory, geiger, graphics, methods, mvSLOUCH,
phangorn, stats, TreeSim, treespace, utils, yuima
ABCdist.R ABCmessage.R ABC.R ABCupdate.R draw.R getTipSample.R
rates.R simsde.R simtree.R

Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) <10.5506/APhysPolBSupp.12.25>.

ape (>= 3.0.6), distory, geiger, graphics, methods, mvSLOUCH,
phangorn, stats, TreeSim, utils, yuima

Krzysztof Bartoszek <bartoszekkj@gmail.com>, Pietro Lio'
Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data.

Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) <doi:10.5506/APhysPolBSupp.12.25>.

Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) <doi:10.5506/APhysPolBSupp.12.25>. The suggested geiger package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/geiger/>, suggested to take latest version. Otherwise its required code is present in the pcmabc package. The suggested distory package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/distory/>, suggested to take latest version.
ape (>= 3.0.6), graphics, methods, mvSLOUCH, phangorn, stats,
TreeSim, utils, yuima
ABCdist.R ABCmessage.R ABC.R ABCupdate.R draw.R
from_geiger_2_0_6_2_diversification.R getTipSample.R rates.R
simsde.R simtree.R