Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing
Data
Implements a method for identifying and removing
the cell-cycle effect from scRNA-Seq data. The description of the
method is in Barron M. and Li J. (2016) <doi:10.1038/srep33892>. Identifying and removing
the cell-cycle effect from single-cell RNA-Sequencing data. Submitted.
Different from previous methods, ccRemover implements a mechanism that
formally tests whether a component is cell-cycle related or not, and thus
while it often thoroughly removes the cell-cycle effect, it preserves
other features/signals of interest in the data.

c(person("Koki", "Tsuyuzaki", role = c("aut", "cre"),
email = "k.t.the-answer@hotmail.co.jp"),
person("Itoshi", "Nikaido", role = "aut"))
CUR/CX decomposition factorizes a matrix into two factor matrices and Multidimensional CX Decomposition factorizes a tensor into a core tensor and some factor matrices. See the reference section of GitHub README.md <https://github.com/rikenbit/ccTensor>, for details of the methods.
Koki Tsuyuzaki [aut, cre],
Itoshi Nikaido [aut]

(Robust) canonical correlation analysis via projection pursuit
c(person("Andreas", "Alfons", email =
"andreas.alfons@kuleuven.be", role = c("aut", "cre")),
person("David", "Simcha", role = "aut"))
Canonical correlation analysis via projection pursuit and
fast implementations of correlation estimators, with a focus on
robust and nonparametric methods.
'cca.R' 'cor.R' 'fastMAD.R' 'fastMedian.R' 'permTest.R'
'print.R' 'utils.R'
Andreas Alfons [aut, cre], David Simcha [aut]

Canonical correlation analysis and maximum correlation via
projection pursuit, as well as fast implementations of
correlation estimators, with a focus on robust and
nonparametric methods.
c(person("Andreas", "Alfons", email =
"andreas.alfons@kuleuven.be", role = c("aut", "cre")),
person("David", "Simcha", role = "ctb"))
'cca.R' 'cor.R' 'fastMAD.R' 'fastMedian.R' 'maxCor.R'
'permTest.R' 'print.R' 'utils.R'
Andreas Alfons [aut, cre], David Simcha [ctb]

Rcpp (>= 0.9.10), parallel, pcaPP (>= 1.8-1), robustbase
Canonical correlation analysis and maximum correlation via
projection pursuit, as well as fast implementations of correlation
estimators, with a focus on robust and nonparametric methods.
c(person("Andreas", "Alfons", email = "alfons@ese.eur.nl",
role = c("aut", "cre")), person("David", "Simcha", role = "ctb"))
Andreas Alfons [aut, cre],
David Simcha [ctb]