utils, RColorBrewer, ape, adegenet, reshape2, sna, plyr,
ggmap, networkDynamic, scales

utils, RColorBrewer, ape, reshape2, sna, plyr, ggmap,
networkDynamic, scales
'auxClasses.R' 'generics.R' 'obkContacts.R' 'obkSequences.R'
'obkData.R' 'obkData_Accessors.R' 'subset.R' 'obkData_basics.R'
'uniqSequences.R' 'dna2uniqSequences.R' 'make.phylo.R'
'make.attributes.R' 'get.incidence.R' 'phylo2ggphy.R'
'plotggMST.R' 'plotggphy.R' 'plot.R' 'plotIndividualTimeline.R'
'simuEpi.R' 'utils.R' 'plotGeo.R' 'annotatedTreeReader.R'
'zzz.R' 'epibase.R'

utils, RColorBrewer, ape, reshape2, sna, plyr, ggmap,
networkDynamic, scales, rjson
'auxClasses.R' 'generics.R' 'obkContacts.R' 'obkSequences.R'
'obkData.R' 'obkData_Accessors.R' 'subset.R' 'obkData_basics.R'
'uniqSequences.R' 'dna2uniqSequences.R' 'make.phylo.R'
'make.attributes.R' 'get.incidence.R' 'phylo2ggphy.R'
'plotggMST.R' 'plotggphy.R' 'plot.R' 'plotIndividualTimeline.R'
'simuEpi.R' 'utils.R' 'plotGeo.R' 'annotatedTreeReader.R'
'importFromJSON.R' 'zzz.R' 'epibase.R'

Elementary Functions for Epidemiolical Analysis
This package contains elementary tools for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement (kappa, sensitivity/specificity).  Appropriate print and summary statements are also written to facilitate interpretation wherever possible.  This package is a work in progress, so any comments or suggestions would be appreciated.  Source code is commented throughout to facilitate modification.  The target audience includes biostatisticians and epidemiologists who would like to apply standard epidemiological methods in a simple manner.

Elementary Epidemiological Functions for a Graduate Epidemiology\Biostatistics Course
This package contains elementary tools for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement (kappa, sensitivity/specificity).  Appropriate print and summary statements are also written to facilitate interpretation wherever possible.  This package is a work in progress, so any comments or suggestions would be appreciated.  Source code is commented throughout to facilitate modification.  The target audience includes graduate students in various epi/biostatistics courses.