Suggests: conflicted, dplyr, glue, knitr, rmarkdown, testthat, biomaRt,
Packaged: 2021-04-09 21:14:08 UTC; conniebrett

Imports: assertthat, magrittr, stringr, utils
Packaged: 2022-03-25 17:43:29 UTC; conniebrett

Packaged: 2022-05-10 01:20:47 UTC; conniebrett

Suggests: biomaRt, conflicted, dplyr, edgeR, GenomicRanges, glue,
Packaged: 2022-05-13 19:51:14 UTC; conniebrett

Title: Differential Gene Expression (DGE) Analysis Utility Toolkit
Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE)
analysis (Law (2015) <doi:10.12688/f1000research.9005.3>).  The tools include both analysis
work-flow and utility functions: mapping/unit conversion, count normalization, accounting for
unknown covariates, and more.  This is a complement/cohort to the 'DGEobj' package that
provides a flexible container to manage and annotate Differential Gene Expression analysis results.
Imports: assertthat, DGEobj (>= 1.0.3), dplyr, statmod, stats, stringr,
tidyr, edgeR, IHW, limma, qvalue, RNASeqPower, sva, zFPKM
Suggests: canvasXpress, conflicted, glue, ggplot2, knitr, rmarkdown,
Packaged: 2021-04-26 17:26:21 UTC; conniebrett

Imports: assertthat, DGEobj (>= 1.0.3), dplyr, stats, stringr, edgeR,
Suggests: canvasXpress, conflicted, glue, ggplot2, IHW, knitr,
RNASeqPower, rmarkdown, statmod, testthat, biomaRt, zFPKM
Packaged: 2021-10-27 16:00:30 UTC; conniebrett

Packaged: 2022-05-10 01:44:12 UTC; conniebrett

Imports: assertthat, DGEobj (>= 1.0.3), dplyr, methods, stats, stringr
Suggests: biomaRt, canvasXpress, conflicted, edgeR, glue, ggplot2, IHW,
limma, knitr, qvalue, RNASeqPower, rmarkdown, statmod, sva,
Packaged: 2022-05-19 23:29:26 UTC; conniebrett

Title: Double Generalized Linear Models Extending Poisson Regression
person("Antonio Jose", "Saez-Castillo", role = c("aut"), email = "ajsaez@ujaen.es"),
person("Antonio", "Conde-Sanchez", role = c("aut"), email = "aconde@ujaen.es"),
person("Francisco", "Martinez", role = c("aut", "cre"), email = "fmartin@ujaen.es"))
Description: Model estimation, dispersion testing and diagnosis of hyper-Poisson
Saez-Castillo, A.J. and Conde-Sanchez, A. (2013)
<doi:10.1016/j.csda.2012.12.009> and Conway-Maxwell-Poisson Huang, A. (2017)
Imports: compoisson, nloptr (>= 1.2.1), COMPoissonReg, progress
Author: Antonio Jose Saez-Castillo [aut],