Title: Multiplicity Control using Pooled LIS Statistic
Description: A multiple testing procedure for testing several groups of
hypotheses is implemented. Linear dependency among the hypotheses
within the same group is modeled by using hidden Markov Models.
It is noted that a smaller p value does not necessarily imply
more significance due to the dependency. A typical application is
to analyze genome wide association studies datasets, where SNPs
from the same chromosome are treated as a group and exhibit
strong linear genomic dependency. See Wei Z, Sun W, Wang K,
Hakonarson H (2009) <doi:10.1093/bioinformatics/btp476> for more details.

Title: Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for
Authors@R: c(person("Cristina", "Mollica", role = c("aut", "cre"), email = "cristina.mollica@uniroma1.it"), person("Luca", "Tardella", role = "aut",email = "luca.tardella@uniroma1.it"))
Description: Fit finite mixtures of Plackett-Luce models for partial top rankings/orderings within the Bayesian framework. It provides MAP point estimates via EM algorithm and posterior MCMC simulations via Gibbs Sampling. It also fits MLE as a special case of the noninformative Bayesian analysis with vague priors.
Imports: Rcpp (>= 0.12.7), abind, foreach, combinat, FSA, rcdd
Suggests: gtools, label.switching, MCMCpack, doParallel

Description: Fit finite mixtures of Plackett-Luce models for partial top rankings/orderings within the Bayesian framework. It provides MAP point estimates via EM algorithm and posterior MCMC simulations via Gibbs Sampling. It also fits MLE as a special case of the noninformative Bayesian analysis with vague priors. In addition to inferential techniques, the package assists other fundamental phases of a model-based analysis for partial rankings/orderings, by including functions for data manipulation, simulation, descriptive summary, model selection and goodness-of-fit evaluation.
Imports: Rcpp (>= 0.12.16), abind, foreach, rcdd, MCMCpack, gtools,

Imports: Rcpp (>= 0.12.14), abind, foreach, rcdd, MCMCpack, gtools,