Author: Anton Gagin, Katharine Mullen, Igor Levin

Title: Performs Quality Control, Data Normalization, and Batch Effect
Correction for 'NanoString nCounter' Data
Description: Provides quality control (QC), normalization, and
batch effect correction operations for 'NanoString nCounter' data,
Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>.  Various
metrics are used to determine which samples passed or failed QC.  Gene
expression should first be normalized to housekeeping genes, before a
reference-based approach is used to adjust for batch effects.  Raw
NanoString data can be imported in the form of Reporter Code Count
Imports: assertthat, ccaPP, dplyr, magrittr, purrr, readr, rlang,
Suggests: covr, epiR, ggplot2, knitr, pander, rmarkdown, stringr,

Imports: assertthat, ccaPP, dplyr, epiR, magrittr, purrr, rlang

Packaged: 2022-05-24 21:27:00 UTC; derekchiu

Imports: assertthat, ccaPP, dplyr, epiR, forcats, magrittr, purrr,
Packaged: 2022-08-19 23:22:30 UTC; derekchiu

Description: Full 64-bit resolution date and time support with resolution up
to nanosecond granularity is provided, with easy transition to and from the
Imports: bit64, RcppCCTZ (>= 0.1.0), zoo
SystemRequirements: RcppCCTZ is needed making this (currently)

Imports: bit64, RcppCCTZ (>= 0.2.0), zoo

Imports: methods, bit64, RcppCCTZ (>= 0.2.3), zoo

Imports: methods, bit64, RcppCCTZ (>= 0.2.8), zoo
Collate: 'nanotime.R' 'nanoival.R' 'nanoduration.R' 'nanoperiod.R'

Title: Nanosecond-Resolution Time Support for R
Description: Full 64-bit resolution date and time functionality with
nanosecond granularity is provided, with easy transition to and from
the standard 'POSIXct' type. Three additional classes offer interval,
period and duration functionality for nanosecond-resolution timestamps.

Imports: methods, bit64, RcppCCTZ (>= 0.2.9), zoo

person("Tom", "Westlake", , "tom.westlake@dft.gov.uk", role = c("aut")),
person("Francesca", "Bryden", , "francesca.bryden@dft.gov.uk", role = c("aut", "cre")),
person("Sara", "Smith", , "sara.smith@dft.gov.uk", role = c("aut")))
Description: An R wrapper for pulling data from the National Public Transport Access Nodes ('NaPTAN') API (<https://www.api.gov.uk/dft/national-public-transport-access-nodes-naptan-api/#national-public-transport-access-nodes-naptan-api>). This allows users to download 'NaPTAN' transport information, for the full dataset, by ATCO region code, or by name of region.