Title: Analysis of Parent-Specific DNA Copy Numbers
Author: A.B. Olshen, H. Bengtsson, P. Neuvial, P. Spellman, R.A.
Description: Segments allele-specific DNA copy number data to detect
regions with abnormal copy number within each parental
Suggests: DNAcopy (>= 1.24.0), aroma.light (>= 1.20.0), matrixStats (>=

Author: A.B. Olshen, H. Bengtsson, P. Neuvial, P.T. Spellman, R.A.

Author: A.B. Olshen, H. Bengtsson, P. Neuvial, P.T. Spellman, R.A. Olshen, V.E. Seshan
Description: Segments allele-specific DNA copy number data to detect regions
with abnormal copy number within each parental chromosome
Suggests: DNAcopy (>= 1.24.0), aroma.light (>= 1.21.2), matrixStats (>=

Suggests: DNAcopy (>= 1.24.0), aroma.light (>= 1.22.0), matrixStats (>=

Imports: DNAcopy (>= 1.24.0), utils, R.rsp (>= 0.7.5)

Imports: utils, R.methodsS3 (>= 1.4.2), R.oo (>= 1.9.8), DNAcopy (>=
Suggests: DNAcopy (>= 1.27.2), aroma.light (>= 1.22.0), matrixStats (>=

Imports: utils, R.methodsS3 (>= 1.4.2), R.oo (>= 1.10.1), DNAcopy (>=

Imports: utils, R.methodsS3 (>= 1.4.2), R.oo (>= 1.13.0), R.utils (>=
Authors@R: c( person("Henrik", "Bengtsson", role=c("aut", "cre",
role="aut"), person("Venkatraman E.", "Seshan", role="aut"),
person("Adam B.", "Olshen", role="aut"), person("Paul T.",
"Spellman", role="aut"), person("Richard A.", "Olshen",
Description: Segmentation of allele-specific DNA copy number data and
detection of regions with abnormal copy number within each
parental chromosome.  Both tumor-normal paired and tumor-only

Imports: utils, R.methodsS3 (>= 1.4.4), R.oo (>= 1.13.9), R.utils (>=
Suggests: DNAcopy (>= 1.27.2), aroma.light (>= 1.28.0), matrixStats (>=
Description: Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Suggests: aroma.light (>= 1.28.0), R.cache (>= 0.8.1), Hmisc (>=
Author: Henrik Bengtsson [aut, cre, cph],

SuggestsNote: BioC (>= 3.0), Recommended: Hmisc, aroma.light