Packaged: Tue Jul  8 11:29:44 2008; froehlih

Packaged: Wed Aug 13 18:00:25 2008; froehlih

Author: Holger Froehlich <h.froehlich@dkfz.de>, contributions by Tim Beissbarth <t.beissbarth@dkfz.de>
Depends: R (>= 2.6.0), GO.db (>= 2.2.0), AnnotationDbi, annotate, org.Dm.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Pf.plasmo.db, org.Rn.eg.db, org.Sc.sgd.db, topGO, cluster (>= 1.11.7), mclust (>= 3.1), RBGL, graph, Matrix, corpcor
Packaged: Tue Aug 26 19:23:13 2008; froehlih

Packaged: Mon Sep 15 15:57:25 2008; froehlih

Packaged: Tue Oct 28 13:14:57 2008; froehlih

Packaged: Mon Dec  1 17:16:26 2008; froehlih

Packaged: Wed Dec  3 11:13:43 2008; froehlih

Packaged: Thu Dec  6 16:42:01 2007; froehlih

Title: Computation of functional similarities between GO terms and gene
Author: Holger Froehlich <h.froehlich@gmx.de>, contributions by Tim
Depends: R (>= 2.7.0), GO.db (>= 2.2.0), AnnotationDbi, annotate,
topGO, cluster (>= 1.11.7), flexmix, RBGL, graph, Matrix,
computing similarities between GO terms and gene products based
on their GO annotation. Moreover it allows for computing a GO

Author: Holger Froehlich <frohlich@bit.uni-bonn.de>, contributions by

topGO, cluster (>= 1.11.7), mclust (>= 3.1), RBGL, graph,

Title: Visualization of Functional Analysis Data
Author: Wencke Walter, Fatima Sanchez-Cabo
Description: Implementation of multilayered visualizations for enhanced graphical
representation of functional analysis data. It combines and integrates omics
data derived from expression and functional annotation enrichment analyses.
Its plotting functions have been developed with an hierarchical structure in
mind: starting from a general overview to identify the most enriched
categories (modified bar plot, bubble plot) to a more detailed one displaying
different types of relevant information for the molecules in a given set of
categories (circle plot, chord plot, cluster plot, Venn diagram).
Depends: ggplot2 (>= 1.0.1), ggdendro (>= 0.1.15), gridExtra (>=

person("Wencke", "Walter", , email = "wencke.walter@arcor.de", role = c("aut", "cre")),
person("Fatima", "Sanchez-Cabo", , role = "aut")
Description: Implementation of multilayered visualizations for enhanced
graphical representation of functional analysis data. It combines and integrates
omics data derived from expression and functional annotation enrichment
analyses. Its plotting functions have been developed with an hierarchical
structure in mind: starting from a general overview to identify the most
enriched categories (modified bar plot, bubble plot) to a more detailed one
displaying different types of relevant information for the molecules in a given
set of categories (circle plot, chord plot, cluster plot, Venn diagram, heatmap).
Depends: ggplot2 (>= 2.0.0), ggdendro (>= 0.1-17), gridExtra (>=
Packaged: 2016-03-30 08:24:21 UTC; BioinfoNerd