Title: Phylogenetic Comparative Methods for High-Dimensional Traits
Description: Tools for studying the evolution of high-dimensional traits
(morphometric, function-valued, etc.) including ancestral state reconstruction,
estimating phylogenetic signal, and assessing correlated trait evolution. Visit
Imports: Rcpp, ape, drc, dtw, geiger, geomorph (>= 3.0.0), GPfit,
Matrix, mvnmle, phylolm, phytools, rgl, doParallel, foreach,
parallel, grDevices, graphics, stats, utils

Description: Tools for studying the evolution of high-dimensional traits (morphometric, function-valued, etc.) including ancestral state reconstruction, estimating phylogenetic signal, and assessing correlated trait evolution. Visit http://www.phylocurve.org for more information.
Matrix, mvnmle, phylolm, phytools, rgl, doSNOW, doParallel,
foreach, parallel, grDevices, graphics, stats, utils

Matrix, phylolm, phytools, rgl, doParallel, foreach, parallel,

Title: Statistical Tools for Phylodynamics
Author: Michael Karcher, Julia Palacios, Shiwei Lan, Vladimir Minin
Description: Statistical tools for reconstructing population size from genetic
Suggests: INLA, knitr, testthat, rmarkdown

Title: Dendrograms for Evolutionary Analysis
Description: Contains functions for importing and exporting 'dendrogram'
objects in parenthetic text format, and several
functions for command-line tree manipulation.
With an emphasis on speed and computational efficiency,
the package also includes a suite of tools for rapidly computing
distance matrices and building large trees using fast alignment-free
'k-mer' counting and divisive clustering techniques.
Imports: openssl, Rcpp (>= 0.12.8), stats,

objects in parenthetic text format, as well as several

Description: Contains functions for developing phylogenetic trees as
Enables bi-directional conversion between dendrogram and
(see Paradis et al (2004) <doi:10.1093/bioinformatics/btg412>),
and features several tools for command-line tree
manipulation and import/export via Newick parenthetic text.
Suggests: dendextend, knitr, rmarkdown, testthat