Title: Multiple equivalence tests and simultaneous confidence intervals
comparing two treatments if there is more than one primary response
variable (endpoint). The step-up procedure of Quan et al. (2001)
Packaged: Fri Jan 30 11:59:01 2009; Mario

Title: Multiple Equivalence Tests and Simultaneous Confidence Intervals
Description: Equivalence tests and related confidence intervals for the
comparison of two treatments, simultaneously for one or many
normally distributed, primary response variables (endpoints).
The step-up procedure of Quan et al. (2001) is both applied for
differences and extended to ratios of means. A related

comparison of two treatments, simultaneously for one or many normally
distributed, primary response variables (endpoints). The step-up
procedure of Quan et al. (2001) is both applied for differences and
extended to ratios of means. A related single-step procedure is also
Packaged: 2022-03-01 15:09:12 UTC; Administrator

Title: Reconstruction of Clones from Integration Site Readouts and
Author: Sebastian Wagner [cre, aut] (<https://orcid.org/0000-0001-6468-4833>),
Description: Tools necessary to reconstruct clonal affiliations from
temporally and/or spatially separated measurements of viral
integration sites. For this means it utilizes correlations present
in the relative readouts of the integration sites. Furthermore,
facilities for filtering of the data and visualization of different
steps in the pipeline are provided with the package.
Imports: clValid, cluster, clv, dplyr, foreach, ggplot2, igraph, ltm,
plyr, poweRlaw, reshape2, RColorBrewer, rlang, rmutil
Suggests: knitr, markdown, mclust, testthat, gridExtra

Author: John E. Kolassa & Stephane Jankowski
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Description: A collection of multivariate nonparametric methods, selected in part to support an MS level course in nonparametric statistical methods.   Methods include adjustments for multiple comparisons, implementation of multivariate Mann-Whitney-Wilcoxon testing, inversion of these tests to produce a confidence region, some permutation tests for linear models, and somealgorithms for calculating exact probabilities associated with one- and two- stage testing involving Mann-Whitney-Wilcoxon statistics.