X-CRAN-Comment: Orphaed on 2018-09-09 as there was no response to
requests to repair an intermittent test error.

Title: Access to the YouTheria mammal trait database
Description: A programmatic interface to web-services of Youtheria. Youtheria is an online database of mammalian trait data.

Title: Access to the YouTheria Mammal Trait Database
Description: A programmatic interface to web-services of YouTheria. YouTheria is
an online database of mammalian trait data <http://www.utheria.org/>.

Title: Reference Analysis for Bayesian Meta-Analysis
person("Malgorzata", "Roos", role = "aut")
Description: Functionality for performing a principled reference analysis in the Bayesian normal-normal hierarchical model used for Bayesian meta-analysis, as described in Ott, Plummer and Roos (2021, "How vague is vague? How informative is informative? Reference analysis for Bayesian meta-analysis", under minor revision for Statistics in Medicine). Computes a reference posterior, induced by a minimally informative improper reference prior for the between-study (heterogeneity) standard deviation. Determines additional proper anti-conservative (and conservative) prior benchmarks. Includes functions for reference analyses at both the posterior and the prior level, which, given the data, quantify the informativeness of a heterogeneity prior of interest relative to the minimally informative reference prior and the proper prior benchmarks. The functions operate on data sets which are compatible with the 'bayesmeta' package.

Title: Inference Tool for Antibody Haplotype
Description: Infers V-D-J haplotypes and gene deletions from AIRR-seq data,
based on IGHJ, IGHD or IGHV as anchor, by adapting a Bayesian framework.
It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene.
Imports: dplyr (>= 0.5.0), reshape2, plotly (>= 4.7.1), gtools (>=
data.table, ggdendro (>= 0.1.20), gridExtra, alakazam (>=
0.2.10), tigger (>= 0.2.11), methods, htmlwidgets, gtable,
Collate: 'Data.R' 'rabhit.R' 'internal_functions.R' 'functions.R'