Author: Thore Egeland and Magnus Dehli Vigeland.
Depends: R (>= 3.2.0), Familias, paramlink
Description: Functionality provided for conditional simulation, likelihoods and plotting of pedigrees, mostly as a wrapper for 'paramlink'. Users typically start by exporting from the Windows version of 'Familias'.

Package: famSKATRC
Type: Package
Title: Family Sequence Kernel Association Test for Rare and Common
Variants
Version: 1.0.3
Author: Khalid B. Kunji [aut, cre], Mohamad Saad [aut]
Authors@R: c(person(given = "Khalid B.", family = "Kunji", role = c("aut",
"cre"), email = "kkunji@hbku.edu.qa"), person(given = "Mohamad",
family = "Saad", role = c("aut"), email = "msaad@hbku.edu.qa"))
Maintainer: Khalid B. Kunji <kkunji@hbku.edu.qa>
Repository: CRAN
Description: FamSKAT-RC is a family-based association kernel test for both
rare and common variants. This test is general and several special cases
are known as other methods: famSKAT, which only focuses on rare variants
in family-based data, SKAT, which focuses on rare variants in
population-based data (unrelated individuals), and SKAT-RC, which focuses
on both rare and common variants in population-based data. When one
applies famSKAT-RC and sets the value of phi to 1, famSKAT-RC becomes
famSKAT. When one applies famSKAT-RC and set the value of phi to 1 and the
kinship matrix to the identity matrix, famSKAT-RC becomes SKAT. When one
applies famSKAT-RC and set the kinship matrix (fullkins) to the identity
matrix (and phi is not equal to 1), famSKAT-RC becomes SKAT-RC. We also
include a small sample synthetic pedigree to demonstrate the method with.
For more details see Saad M and Wijsman EM (2014) <doi:10.1002/gepi.21844>.
License: GPL (>= 3)
URL: https://www.r-project.org,
https://www.ncbi.nlm.nih.gov/pubmed/25132070
Imports: CompQuadForm, kinship2, coxme, bdsmatrix
LinkingTo:
Depends: R (>= 3.4.1)
Encoding: UTF-8
LazyData: true
KeepSource: TRUE
NeedsCompilation: no
Packaged: 2017-10-12 08:25:43 UTC; kunji
Date/Publication: 2017-10-12 11:24:27 UTC

Package: famSKATRC
Type: Package
Title: Family Sequence Kernel Association Test for Rare and Common
Variants
Version: 1.1.0
Author: Khalid B. Kunji [aut, cre], Mohamad Saad [aut]
Authors@R: c(person(given = "Khalid B.", family = "Kunji", role = c("aut",
"cre"), email = "kkunji@hbku.edu.qa"), person(given = "Mohamad",
family = "Saad", role = c("aut"), email = "msaad@hbku.edu.qa"))
Maintainer: Khalid B. Kunji <kkunji@hbku.edu.qa>
Repository: CRAN
Description: FamSKAT-RC is a family-based association kernel test for both
rare and common variants. This test is general and several special cases
are known as other methods: famSKAT, which only focuses on rare variants
in family-based data, SKAT, which focuses on rare variants in
population-based data (unrelated individuals), and SKAT-RC, which focuses
on both rare and common variants in population-based data. When one
applies famSKAT-RC and sets the value of phi to 1, famSKAT-RC becomes
famSKAT. When one applies famSKAT-RC and set the value of phi to 1 and the
kinship matrix to the identity matrix, famSKAT-RC becomes SKAT. When one
applies famSKAT-RC and set the kinship matrix (fullkins) to the identity
matrix (and phi is not equal to 1), famSKAT-RC becomes SKAT-RC. We also
include a small sample synthetic pedigree to demonstrate the method with.
For more details see Saad M and Wijsman EM (2014) <doi:10.1002/gepi.21844>.
License: GPL (>= 3)
URL: https://www.r-project.org,
https://www.ncbi.nlm.nih.gov/pubmed/25132070
Imports: CompQuadForm, kinship2, coxme, bdsmatrix
LinkingTo:
Depends: R (>= 3.4.1)
Encoding: UTF-8
LazyData: true
KeepSource: TRUE
NeedsCompilation: no
Packaged: 2017-11-08 19:24:55 UTC; kunji
Date/Publication: 2017-11-09 15:01:06 UTC