Package: diversitree
Title: diversitree: comparative phylogenetic analyses of
diversification
Version: 0.9-7
Date: 2014-02-20
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with GeoSSE and
ClaSSE by Emma E. Goldberg <eeg@uic.edu>, and BiSSE-ness by Karen
Magnuson-Ford.
Maintainer: Richard G. FitzJohn <rich.fitzjohn@gmail.com>
Depends: R (>= 2.10), deSolve (>= 1.7), ape, subplex, methods, Rcpp (>=
0.10.0)
Suggests: numDeriv, minqa, lubridate, expm, caper, geiger
LinkingTo: Rcpp
RcppModules: diversitree
SystemRequirements: fftw3 (>= 3.1.2), gsl (>= 1.15)
Description: Contains a number of comparative phylogenetic methods,
mostly focusing on analysing diversification and character
evolution.  Contains implementations of BiSSE (Binary State
Speciation and Extinction; Maddison et al. 2007: Syst. Biol. 56:
701) and its unresolved tree extensions (FitzJohn et al. 2009:
Syst. Biol. 58: 595), MuSSE (Multiple State Speciation and
Extinction), QuaSSE (Quantitative State Speciation and Extinction;
FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE (Geographic State
Speciation and Extinction; Goldberg et al. 2011: Syst. Biol. 60:
451), and BiSSE-ness (Magnuson-Ford and Otto 2012: Am. Nat.)
Other included methods include Markov models of discrete and
continuous trait evolution and constant rate speciation and
extinction.
License: GPL (>= 2)
URL: http://www.zoology.ubc.ca/prog/diversitree
Packaged: 2014-02-20 06:01:22 UTC; rich
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-02-20 07:37:29

Title: Comparative Phylogenetic Analyses of Diversification
Speciation and Extinction) and its unresolved tree extensions,
'MuSSE' (Multiple State Speciation and Extinction), 'QuaSSE',

Package: diversitree
Version: 0.9-9
Title: Comparative 'Phylogenetic' Analyses of Diversification
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with 'GeoSSE' and
'ClaSSE' by Emma E. Goldberg <eeg@uic.edu>, and 'BiSSE-ness' by Karen
Magnuson-Ford.
Maintainer: Richard G. FitzJohn <rich.fitzjohn@gmail.com>
Depends: R (>= 2.10), methods, ape
Imports: deSolve (>= 1.7), graphics, grDevices, stats, subplex, Rcpp
(>= 0.10.0)
Suggests: numDeriv, minqa, lubridate, expm, caper, geiger
LinkingTo: Rcpp
RcppModules: diversitree
SystemRequirements: fftw3 (>= 3.1.2), gsl (>= 1.15)
Description: Contains a number of comparative 'phylogenetic' methods,
mostly focusing on analysing diversification and character
evolution.  Contains implementations of 'BiSSE' (Binary State
'Speciation' and Extinction) and its unresolved tree extensions,
'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE',
'GeoSSE', and 'BiSSE-ness' Other included methods include Markov
models of discrete and continuous trait evolution and constant rate
'speciation' and extinction.
License: GPL (>= 2)
URL: http://www.zoology.ubc.ca/prog/diversitree
NeedsCompilation: yes
Packaged: 2016-10-05 09:03:42 UTC; rich
Repository: CRAN
Date/Publication: 2016-10-05 11:30:53