Description: Fit Cox proportional hazards models containing both
on Ripatti and Palmgren, Biometrics 2002.

Maintainer: Terry M. Therneau <therneau.terry@mayo.edu>

Depends: survival (>= 2.36.14), bdsmatrix (>= 1.3), nlme, Matrix (>=

Title: Cox Mixed-Effects Models for Genome-Wide Association Studies
Description: Fast algorithms for fitting a Cox mixed-effects model for e.g., genome-wide association studies. See Liang He and Alexander Kulminski (2019) <doi:10.1101/729285>.
Imports: nloptr, MASS, matrixcalc, SNPRelate, rARPACK, stats, Matrix,

Imports: nloptr, MASS, matrixcalc, SNPRelate, SeqArray, rARPACK, stats,
Suggests: coxme, gdsfmt, GENESIS, knitr, rmarkdown, testthat

Title: Cox Mixed-Effects Model for Genome-Wide Association Studies

Title: Sparse Estimation of Cox Proportional Hazards Models via
Author: Xiaogang Su and Razieh Nabi Abdolyousefi
Description: Sparse estimation for Cox PH models is done via
Minimum approximated Information Criterion (MIC) by Su, Wijayasinghe,
Fan, and Zhang (2016) <DOI:10.1111/biom.12484>. MIC mimics the best
subset selection using a penalized likelihood approach yet with no need
of a tuning parameter. The problem is further reformulated with a
re-parameterization step so that it reduces to one unconstrained non-convex
yet smooth programming problem, which can be solved efficiently. Furthermore,
the re-parameterization tactic yields an additional advantage in terms of
Imports: survival (>= 2.38), numDeriv (>= 2014.2-1)

Title: Stochastic Gradient Descent log-Likelihood Estimation in Cox
person("Marcin",   "Kosinski", role = c("aut", "cre"), email = "m.p.kosinski@gmail.com"),
person("Przemyslaw", "Biecek", role = c("ctb"),        email = "przemyslaw.biecek@gmail.com")
Description: Estimate coefficients of Cox proportional hazards model using stochastic gradient descent algorithm for batch data.

Title: Cox regression with Firth's penalized likelihood
Author: R by Meinhard Ploner, Fortran by Georg Heinze
Description: Cox regression with Firth's penalized likelihood
Packaged: Tue Apr 10 10:16:40 2007; Georg