MASS, stats, shinyhelper, shinycssloaders, shinyglide,

htmltools, stringr, commonmark, bslib, mlogit, readxl

Title: Efficient and Accessible Discrete Choice Experiments
Description: Design, conduct and analyze 'DCEs' from a virtual interface in shiny. Reference: Perez-Troncoso, D. (2022) <https://github.com/danielpereztr/DCEtool>.
Depends: ggplot2, survival, shinyBS, shinycssloaders
Imports: shiny, shinythemes, shinyWidgets, mvtnorm, DT, writexl,
readxl, idefix, tidyr, mlogit, knitr, fastDummies, tidyverse,
matrixStats, bslib, magrittr, htmltools, tibble, stringi,
dfidx, adjustedcranlogs, rmarkdown, rlist, remotes

Title: Data Cloud Geometry (DCG): Using Random Walks to Find Community
Authors@R: c(person("Chen", "Chen", role = "aut"),
person("Jian", "Jin", email = "jinjian.pku@gmail.com", role = c("aut", "cre")),
person("Brianne", "Beisner", role = "aut"),
person("Brenda", "McCowan", role = c("aut", "cph")),
person("Hsieh", "Fushing", role = c("aut", "cph")))
Description: Data cloud geometry (DCG) applies random walks in finding community structures for social networks.
Copyright: Fushing Lab & McCowan Lab, University of California, Davis
Suggests: testthat, knitr, rmarkdown, devtools, lattice, png

person("Jian", "Jin", email = "jinjian.pku@gmail.com", role = "aut"),
person("Jessica", "Vandeleest", email = "vandelee@ucdavis.edu", role = c("aut", "cre")),
Fushing, VanderWaal, McCowan, & Koehl (2013) (<doi:10.1371/journal.pone.0056259>).

Title: Differential Coexpression Analysis of Gene Expression Microarray
Description: Functions for basic differential coexpression analyses:
gene filtering, link filtering, DCG (Differentially-Coexpressed
Gene) identification and DCL (Differentially-Coexpressed Links)
identification.Two algorithms,named DCP and DCe, are provided
for DCG-identification or DCG and DCL-identification.
Packaged: 2010-08-19 02:35:42 UTC; Bao-Hong Liu

Packaged: 2010-12-08 08:12:19 UTC; Administrator

Title: Differential Co-expression Analysis and Differential Regulation
Analysis of Gene Expression Microarray Data
Description: Functions for 1) gene filtration; 2) link filtration; 3)
differential co-expression analysis: DCG (Differential
Coexpressed Gene) identification and DCL (Differentially
Coexpressed Link) identification; and 4) differential
regulation analysis: DRG (Differential Regulated Gene)
identification, DRL (Differential Regulated Link)
identification, DRL visualization and regulator ranking.
Depends: R (>= 2.10), igraph, limma, org.Hs.eg.db
Packaged: 2013-05-23 06:12:13 UTC; Administrator