Description: Six variants of two-way correspondence analysis can be performed,

Description: Provides six variants of two-way correspondence analysis (ca):
simple ca, singly ordered ca, doubly ordered ca, non-symmetrical ca,
singly ordered non symmetrical ca, and doubly ordered non symmetrical

Packaged: 2016-08-18 09:26:29 UTC; Amministratore

simple ca, singly ordered ca, doubly ordered ca, non symmetrical ca,
Packaged: 2016-08-29 07:24:21 UTC; Amministratore

Packaged: 2017-02-27 08:25:49 UTC; Amministratore

Depends: R (> 3.0.1), methods, tools, ggplot2, gridExtra, ggrepel, rgl
Packaged: 2018-09-10 17:10:05 UTC; Amministratore

Packaged: 2019-01-14 15:13:08 UTC; Amministratore

Depends: R (> 3.2.0), methods, tools, ggplot2, gridExtra, ggrepel
Packaged: 2019-09-13 08:21:01 UTC; Amministratore

Depends: R (> 3.0.1), methods, tools, ggforce, ggrepel, gridExtra

Title: CRISPR Pooled Screen Analysis using Beta-Binomial Test
c(person(given = "Hyun-Hwan", family = "Jeong", role = c("aut", "cre"), email = "hyun-hwan.jeong@bcm.edu"))
Description: Provides functions of a statistical hypothesis test for hit gene identification and a mapping algorithm to quantify sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis.
Imports: Rcpp (>= 0.12.16), metap, magrittr, dplyr, tibble, stringr,

Description: Provides functions for hit gene identification and  quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis.
Details are in Jeong et al. (2018) <doi:10.1101/309302> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.

Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.

ggplot2, tidyr, glue, pheatmap, tools, readr

Description: Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis.
ggplot2, tidyr, glue, pheatmap, tools, readr, parallel, R.utils