Package: codyn
Title: Community Dynamics Metrics
Version: 2.0.5
Authors@R: c(person("Lauren", "Hallett", email="lauren.m.hallett@gmail.com", role=c("aut"), comment=c(ORCID = "0000-0002-0718-0257")),
person("Meghan L.", "Avolio", email="meghan.avolio@jhu.edu", role=c("aut"), comment=c(ORCID = "0000-0002-2649-9159")),
person("Ian T.", "Carroll", email="carroll.ian@gmail.com", role=c("aut"), comment=c(ORCID = "0000-0002-3616-810X")),
person("Sydney K.", "Jones", email="syd@sevilleta.unm.edu", role=c("aut")),
person("A. Andrew M.", "MacDonald", email="a.a.m.macdonald@gmail.com", role=c("aut"), comment=c(ORCID = "0000-0003-1162-169X")),
person("Dan F. B.", "Flynn", email="flynn@fas.harvard.edu", role=c("aut"), comment=c(ORCID = "0000-0002-2978-5257")),
person("Peter", "Slaughter", email="slaughter@nceas.ucsb.edu", role=c("aut"), comment=c(ORCID = "0000-0002-2192-403X")),
person("Julie", "Ripplinger", email="julie.ripplinger@asu.edu", role=c("aut"), comment=c(ORCID = "0000-0002-2771-6637")),
person("Scott L.", "Collins", email="scollins@sevilleta.unm.edu", role=c("aut"), comment=c(ORCID = "0000-0002-0193-2892")),
person("Corinna", "Gries", email="cgries@wisc.edu", role=c("aut"), comment=c(ORCID = "0000-0002-9091-6543")),
person("Matthew B.", "Jones", email="jones@nceas.ucsb.edu", role=c("aut", "cre"), comment=c(ORCID = "0000-0003-0077-4738")))
Date: 2020-11-30
Description: Univariate and multivariate temporal and spatial diversity indices,
rank abundance curves, and community stability measures. The functions
implement measures that are either explicitly temporal and include the
option to calculate them over multiple replicates, or spatial and include
the option to calculate them over multiple time points. Functions fall into
five categories: static diversity indices, temporal diversity indices,
spatial diversity indices, rank abundance curves, and community stability
measures. The diversity indices are temporal and spatial analogs to
traditional diversity indices. Specifically, the package includes functions
to calculate community richness, evenness and diversity at a given point in
space and time. In addition, it contains functions to calculate species
turnover, mean rank shifts, and lags in community similarity between two
time points. Details of the methods are available in
Hallett et al. (2016) <doi:10.1111/2041-210X.12569> and Avolio
et al. (2019) <doi:10.1002/ecs2.2881>.
Depends: R (>= 3.2.0)
Imports: assertthat, stats, permute, vegan
Suggests: testthat, knitr, ggplot2, pillar, reshape2, devtools, dplyr,
rmarkdown
Encoding: UTF-8
License: Apache License (== 2.0)
URL: https://github.com/NCEAS/codyn/
BugReports: https://github.com/NCEAS/codyn/issues
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2020-12-01 03:16:55 UTC; jones
Author: Lauren Hallett [aut] (<https://orcid.org/0000-0002-0718-0257>),
Meghan L. Avolio [aut] (<https://orcid.org/0000-0002-2649-9159>),
Ian T. Carroll [aut] (<https://orcid.org/0000-0002-3616-810X>),
Sydney K. Jones [aut],
A. Andrew M. MacDonald [aut] (<https://orcid.org/0000-0003-1162-169X>),
Dan F. B. Flynn [aut] (<https://orcid.org/0000-0002-2978-5257>),
Peter Slaughter [aut] (<https://orcid.org/0000-0002-2192-403X>),
Julie Ripplinger [aut] (<https://orcid.org/0000-0002-2771-6637>),
Scott L. Collins [aut] (<https://orcid.org/0000-0002-0193-2892>),
Corinna Gries [aut] (<https://orcid.org/0000-0002-9091-6543>),
Matthew B. Jones [aut, cre] (<https://orcid.org/0000-0003-0077-4738>)
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>
Repository: CRAN
Date/Publication: 2020-12-01 07:40:06 UTC