Title: PCPS - Principal Coordinates of Phylogenetic Structure
Imports: ape, picante, phylobase, plotrix
Description: Set of functions for analysis of Principal Coordinates of Phylogenetic Structure (PCPS).
Packaged: 2014-05-13 16:47:41 UTC; Vanderlei

Title: Principal Coordinates of Phylogenetic Structure
Packaged: 2015-01-13 12:52:00 UTC; Vanderlei

Maintainer: Vanderlei Julio Debastiani <vanderleidebastiani@yahoo.com.br>
Description: Set of functions for analysis of Principal Coordinates of
Packaged: 2016-04-05 13:16:22 UTC; vanderleidebastiani

Imports: ape, picante, phylobase, vegan, RcppArmadillo, stats,
Packaged: 2018-03-23 01:50:47 UTC; vanderleidebastiani

Packaged: 2018-04-09 22:14:26 UTC; vanderleidebastiani

Packaged: 2018-05-24 13:00:41 UTC; vanderleidebastiani

Collate: 'matrix.p.sig.R' 'pcps.R' 'pcps.sig.R' 'FUN.ADONIS.R'
Packaged: 2020-01-15 21:14:14 UTC; vanderleidebastiani

Packaged: 2014-04-30 13:30:21 UTC; Vanderlei

Title: Quantitative Polymerase Chain Reaction (qPCR) Machine Learning
Authors@R: c(person("Stefan", "Roediger", email = "stefan.roediger@b-tu.de", role = c("cre", "aut")),
person("Michal", "Burdukiewicz", email = "michalburdukiewicz@gmail.com", role = c("aut")),
person("Andrej-Nikolai", "Spiess", email = "a.spiess@uke.de", role = c("aut")),
person("Konstantin A.", "Blagodatskikh", email = "k.blag@yandex.ru", role = c("aut")))
Description: Extracts features from amplification curve data of quantitative Polymerase Chain Reactions (qPCR) (Pabinger, Stephan, Stefan Roediger, Albert Kriegner, Klemens Vierlinger, and Andreas Weinhauusel (2014) <doi:10.1016/j.bdq.2014.08.002>) for machine learning purposes. Helper functions prepare the amplification curve data for processing as functional data (e.g., Hausdorff distance) or enable the plotting of amplification curve classes (negative, ambiguous, positive). The hookreg() and hookregNL() functions can be used to predict amplification curves with an hook effect-like curvature. The pcrfit_single() function can be used to extract features from an amplification curve.
Imports: bcp, changepoint, chipPCR, ecp, fda.usc, FFTrees, magrittr,
MBmca, pbapply, plotly, pracma, qpcR, robustbase, stats,
Suggests: data.table, drc, dplyr, knitr, RDML, readxl, rmarkdown,