Suggests: Biostrings, kebabs (>= 1.5.4), knitr

Title: An Implementation of the Additive Polynomial Design Matrix
person("Tyler", "Matta", email = "tyler.matta@gmail.com", role = c("aut", "cre")),
person("Quinn", "Lathrop", role = c("ctb")),
person("Yeow Meng", "Thum", role = c("ctb")))
Description: An implementation of the additive polynomial (AP) design matrix. It
constructs and appends an AP design matrix to a data frame for use with
longitudinal data subject to seasonality.

Title: Analyses of Phylogenetics and Evolution
Description: Ape provides functions for reading, and plotting phylogenetic
trees in parenthetic format (standard Newick format), analyses of
comparative data in a phylogenetic framework, analyses of diversification
and macroevolution, computing distances from allelic and nucleotide data,
reading nucleotide sequences from GenBank via internet, and several tools
such  as Mantel's test, computation of minimum spanning tree, or the
population parameter theta based on various approaches.

Description: Ape provides functions for reading, writing, and plotting
phylogenetic trees in parenthetic format (standard Newick format),
analyses of comparative data in a phylogenetic framework, analyses of
diversification and macroevolution, computing distances from allelic
and nucleotide data, reading nucleotide sequences from GenBank via
internet, and several tools such  as Mantel's test, computation of
minimum spanning tree, or the population parameter theta based on

Description: Ape provides functions for reading, writing, plotting,
and manipulating phylogenetic trees, analyses of comparative data
in a phylogenetic framework, analyses of diversification and
macroevolution, computing distances from allelic and nucleotide
data, reading nucleotide sequences, and several tools such as
Mantel's test, computation of minimum spanning tree, or the

Mantel's test, computation of minimum spanning tree, the population
parameter theta based on various approaches, generalized skyline plots,
estimation of absolute evolutionary rates and clock-like
trees using non-parametric rate smoothing, conversion of APE trees
to and from hclust objects and for classifying genes in trees using