Title: Integrating Multiple Modalities of High Throughput Assays Using
Description: Provides a systematic framework for
integrating multiple modalities of assays profiled on the same set of
samples. The goal is to identify genes that are altered in cancer
either marginally or consistently across different assays. The
heterogeneity among different platforms and different samples are
automatically adjusted so that the overall alteration magnitude can
be accurately inferred. See Tong and Coombes (2012)

Depends: R (>= 2.10), ltm, foreach, doParallel
Packaged: 2019-05-06 17:41:53 UTC; Kevin Coombes

Title: An Implementation of Interaction Graphs of Aleks Jakulin
Authors@R: person("Petar", "Markovic", email = "peleplay@gmail.com",
Description: Generates a 'Graphviz' graph of the most significant 3-way
interaction gains (i.e. conditional information gains) based on a provided
discrete data frame. Various output formats are supported ('Graphviz', SVG,
PNG, PDF, PS). For references, see the webpage of Aleks Jakulin
DiagrammeRsvg (>= 0.1), rsvg (>= 1.3), gtools (>= 3.5.0), utils

Package: integrOmics
Type: Package
Title: Integrate Omics data project
Version: 1.0
Date: 2009-05-16
Author: Sebastien Dejean, Ignacio Gonzalez and Kim-Anh Le Cao
Maintainer: Kim-Anh Le Cao <k.lecao@uq.edu.au>
Description: The package supplies two efficients nethodologies:
regularized CCA and sparse PLS to unravel relationships between
two heterogeneous data sets coming from high throughput
technologies, such as omics data such as transcriptomics,
metabolomics or proteomics data, but also other large data
sets. Both methodologies allow to integrate two data sets when
the two types of variables are measured on the same
observations (samples). rCCA is a regularized version of CCA to
deal with the large number of variables. sPLS allows variables
selection in a one step procedure and two frameworks are
proposed: regression and canonical analysis. Graphical outputs
are provided to help interpreting the results.
License: GPL (>= 2)
Packaged: 2009-05-15 23:26:10 UTC; k.lecao
Repository: CRAN
Date/Publication: 2009-05-17 16:22:01