Title: TBF Methodology Extension for Multinomial Outcomes
Description: Extends the test-based Bayes factor (TBF) methodology to multinomial regression models and discrete time-to-event models with competing risks. The TBF methodology has been well developed and implemented for the generalised linear model [Held et al. (2015) <doi:10.1214/14-STS510>] and for the Cox model [Held et al. (2016) <doi:10.1002/sim.7089>].
Depends: VGAM, nnet, parallel, stats, stringr, plotrix, methods

Title: Rearrangement Distances Between Unrooted Phylogenetic Trees
person(given = "Chris", family = "Whidden",
email = "cwhidden@fredhutch.org", role = c("cph"))
Copyright: Underlying C++ code copyright 2018 Chris Whidden.
Description: Fast calculation of the Subtree Prune and Regraft (SPR),
Tree Bisection and Reconnection (TBR) and Replug distances between
unrooted trees, using the algorithms of Whidden and
Suggests: knitr, Rdpack, rmarkdown, testthat

Imports: ape, TreeDist, TreeTools (>= 1.1.0)

Imports: ape, Rdpack, TreeDist, TreeTools (>= 1.1.0)

Author: Adriano Polpo <polpo@ufscar.br>, Cassio de Campos
<cassio@idsia.ch>, D. Sinha <sinhad@stat.fsu.edu>, Stuart
Maintainer: Cassio de Campos <cassio@idsia.ch>
Depends: R (>= 2.14.0), stats, mcmc, coda, survival, normalp, R.utils
Description: This package contais the functions used to perform the
reliability analysis using a parametric Transform-both-sides

Depends: R (>= 2.15.3), mcmc, coda, survival, normalp, R.utils, BMS
Description: This package contains functions used to perform the
reliability/survival analysis using a parametric

Title: Survival Analysis using a Transform-Both-Sides model
Author: Adriano Polpo <polpo@ufscar.br>, Cassio de Campos <cassiopc@acm.org>, D. Sinha <sinhad@stat.fsu.edu>, Stuart Lipsitz <slipsitz@partners.org>, Jianchang Lin <jlin@stat.fsu.edu>
Maintainer: Cassio de Campos <cassiopc@acm.org>
Imports: normalp, survival, mcmc, R.utils, coda, Rsolnp, BMS
Description: Functions to perform the reliability/survival
analysis using a parametric Transform-both-sides (TBS) model.