Description: Model selection for penalized graphical models using the Stability Approach to Regularization Selection ('StARS'), with options for speed-ups including Bounded StARS (B-StARS), batch computing, and other stability metrics (e.g., graphlet stability G-StARS). Christian L. Müller, Richard Bonneau, Zachary Kurtz (2016) <arXiv:1605.07072>.
Suggests: batchtools, rappdirs, orca, huge, MASS, QUIC, glmnet,
network, cluster, testthat, knitr, rmarkdown

orca, huge, MASS, QUIC, glmnet, network, cluster, testthat,
Imports: methods, parallel, graphics, stats, utils, tools, Matrix

orca, huge, MASS, BigQuic, glmnet, network, cluster, testthat,

Title: Identification of Transcriptional Dynamics using Pulse Models
Description: A tool for analyzing the transcription, processing and degradation rates of genes by 4sU-seq (the Metabolic Label 4-thiouridine) data and RNA-seq (RNA sequencing) data. It can not only recognize the transcriptional dynamic rates at the measurement time points, but also obtain continuous changes in transcriptional dynamics. More importantly, it is able to predict the trend of mRNA (Mature RNA) transcription and expression changes in the future.
Imports: AnnotationDbi, SummarizedExperiment, Rsamtools, Biobase,
S4Vectors, methods, parallel, GenomicFeatures, ggplot2, grid,
Packaged: 2019-05-17 01:32:57 UTC; Administrator

Title: Parallel Ultra-Rapid p-Value Computation for Linear Regression
Authors@R: person("Sophie", "Molnos", email = "somolnos@gmail.com", role = c("aut", "cre"))
Description: Computes p-values for the interaction term in a very large number of linear regression models.
Imports: Rcpp, DatABEL, parallel, methods
Packaged: 2017-07-25 07:37:16 UTC; sophie.molnos

Packaged: 2017-11-20 08:20:28 UTC; sophie.molnos

Maintainer: Luis J. Villanueva-Rivera <ljvillanueva@coquipr.com>
Description: R package to query and get data out of a Pumilio sound archive system (http://pumilio.sourceforge.net).
Packaged: 2013-07-07 18:19:47 UTC; ljvillanueva

Packaged: 2014-01-02 19:33:20 UTC; ljvillanueva