Description: Creates simple or stacked epidemic curves for hourly, daily, weekly or monthly outcome data.

Maintainer: Jean Pierre Decorps <jean.pierre.decorps@gmail.com>

Imports: deSolve, FME, reshape2, ggplot2, grid
Description: Models of infectious diseases in humans and animals, based on

Imports: deSolve, reshape2, ggplot2, grid
Description: Mathematical models of infectious diseases in humans and animals.
Both, deterministic and stochastic models can be simulated and plotted.
Author: Oswaldo Santos Baquero [aut, cre],
Maintainer: Oswaldo Santos Baquero <oswaldosant@gmail.com>

Maintainer: Oswaldo Santos Baquero <baquero@usp.br>

Title: EpiEstim: a package to estimate time varying reproduction
Description: This package provides tools to quantify transmissibility
throughout an epidemic from the analysis of time series of

Title: Estimate Time Varying Reproduction Numbers from Epidemic Curves
Authors@R: c(person("Anne", "Cori", email = "a.cori@imperial.ac.uk", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-8443-9162")),
person("Simon", "Cauchemez", role = "ctb"),
person("Neil M.", "Ferguson", role = "ctb", comment = c(ORCID = "0000-0002-1154-8093")),
person("Christophe", "Fraser", role = "ctb", comment = c(ORCID = "0000-0003-2399-9657")),
person("Elisabeth", "Dahlqwist", role = "ctb", comment = c(ORCID = "0000-0001-5797-6803")),
person("P. Alex", "Demarsh", role = "ctb"),
person("Thibaut", "Jombart", role = "ctb", comment = c(ORCID = "0000-0003-2226-8692")),
person("Justin", "Lessler", role = "ctb", comment = c(ORCID = "0000-0002-9741-8109")),
person("Jonathan A.", "Polonsky", role = "ctb", comment = c(ORCID = "0000-0002-8634-4255")),
person("Jake", "Stockwin", role = "ctb"),
person("Robin", "Thompson", role = "ctb", comment = c(ORCID = "0000-0001-8545-5212")),
person("Rolina", "van Gaalen", role = "ctb")
Description: Tools to quantify transmissibility throughout
an epidemic from the analysis of time series of incidence as described in
Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004)
Imports: coarseDataTools (>= 0.6-4), stats, graphics, reshape2,
ggplot2, gridExtra, fitdistrplus, coda, incidence (>= 1.7.0),
Suggests: testthat, utils, vdiffr, covr, knitr, rmarkdown
Author: Anne Cori [aut, cre] (<https://orcid.org/0000-0002-8443-9162>),
Jonathan A. Polonsky [ctb] (<https://orcid.org/0000-0002-8634-4255>),