ggpointdensity, ggrepel, gghighlight, ggplot2, ggsci, cowplot,
purrr, dplyr, stringr, tidyr, tibble, RColorBrewer, tidyselect,

Suggests: rmarkdown, knitr, recount3, apeglm

patchwork, purrr, dplyr, stringr, tidyr, tibble, RColorBrewer,

Title: RNA Secondary Structure Module Mining, Comparison and Plotting
Description: Provides function for RNA secondary structure plotting, comparison and module mining. Given a RNA secondary structure, you can obtain stem regions, hairpin loops, internal loops, bulge loops and multibranch loops of this RNA structure using this program. They are the basic modules of RNA secondary structure. For each module you get, you can use this program to label the RNA structure with a specific color. You can also use this program to compare two RNA secondary structures to get a score that represents similarity. Reference: Reuter JS, Mathews DH (2010) <doi:10.1186/1471-2105-11-129>.

Packaged: 2018-03-12 09:26:40 UTC; Administrator

Packaged: 2018-03-19 00:51:38 UTC; Administrator

Packaged: 2018-12-11 00:25:04 UTC; Administrator

Title: RNA Secondary Structure Comparison and Module Mining
Description: Functions in this program is designed for RNA secondary structure plotting, comparison and module mining. Given a RNA secondary structure, you can obtain stem regions, hairpin loops, internal loops, bulge loops and multibranch loops of this RNA structure using this program. They are the basic modules of RNA secondary structure. For each module you get, you can use this program to label the RNA structure with a specific color. You can also use this program to compare two RNA secondary structures to get a score that represents similarity.

Depends: R (>= 2.9.0), rJava (>= 0.8), XML (>= 2.8), RNCBIEUtilsLibs,
Description: This is an alpha release. Retrieve information from the

Title: Axis2 libraries for use in the R environment.
Description: Provides selected Apache Axis2 libraries for the use with
the RNCBI package. For license information see the inst/java

Title: EUtils libraries for use in the R environment.
Description: Provides the libraries of the EUtils operations for the