Description: Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.

Description: Functions for reading ontologies into R as lists and manipulating sets of ontological terms.
Suggests: knitr, xml2, ontologySimilarity, ontologyPlot

Suggests: knitr, rmarkdown, ontologySimilarity, ontologyPlot

Title: Functions for Visualising Sets of Ontological Terms
Description: Functions for visualising sets of ontological terms using the graphviz layout system.
Imports: ontologyIndex, Rgraphviz, methods, functional, magrittr

Imports: methods, ontologyIndex, paintmap, Rgraphviz

Description: Functions for visualising sets of ontological terms using the 'graphviz' layout system.

Title: Visualising Sets of Ontological Terms
Description: Create R plots visualising ontological terms and the relationships between them with various graphical options - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.

Title: Functions for Calculating Ontological Similarities
Description: Functions for calculating semantic similarities between ontological terms or sets of ontological terms based on term information content and assessing statistical significance of similarity in the context of a collection of sets of ontological terms.

Imports: Rcpp (>= 1.0.0), ontologyIndex (>= 2.0)

Description: Calculate similarity between ontological terms and sets of ontological terms based on term information content and assess statistical significance of similarity in the context of a collection of terms sets - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.

Title: Create Validation Tests for Automated Content Analysis
c(person(given = "Chung-hong", family = "Chan", role = c("aut", "cre"), email = "chainsawtiney@gmail.com", comment = c(ORCID = "0000-0002-6232-7530")), person(given = "Marius", family = "Sältzer", role = c("aut"), email = "msaeltze@mail.uni-mannheim.de", comment = c(ORCID = "0000-0002-8604-4666")))
Description: Intended to create standard human-in-the-loop validity tests for typical automated content analysis such as topic modeling and dictionary-based methods. This package offers a standard workflow with functions to prepare, administer and evaluate a human-in-the-loop validity test. This package provides functions for validating topic models using word intrusion and Topic intrusion tests, as described in Chang et al. (2009) <https://papers.nips.cc/paper/3700-reading-tea-leaves-how-humans-interpret-topic-models>. This package also provides functions for generating gold-standard data which are useful for validating dictionary-based methods. The default settings of all generated tests match those suggested in Chang et al. (2009) and Song et al. (2020) <doi:10.1080/10584609.2020.1723752>.
Imports: stm, purrr, tibble, shiny, miniUI, text2vec (>= 0.6), digest,
R6, quanteda, irr, ggplot2, cowplot, dplyr, stats, utils
Suggests: testthat (>= 2.1.0), BTM, topicmodels, keyATM (>= 0.2.2),
Packaged: 2020-11-13 13:46:30 UTC; chainsawriot
Author: Chung-hong Chan [aut, cre] (<https://orcid.org/0000-0002-6232-7530>),