Description: The Causata package provides utilities for
extracting data from the Causata application, training binary classification

Title: Control Charts with Guaranteed In-Control Performance and
Author: Giovanna Capizzi and Guido Masarotto
Description: Design and use of control charts for detecting mean changes
based on a delayed updating of the in-control parameter estimates.

Description: Use pathway topology information to assign weight to
Packaged: 2012-04-28 06:01:37 UTC; Administrator

Packaged: 2012-06-11 06:18:21 UTC; Administrator

Packaged: 2012-06-29 14:24:15 UTC; Administrator

Depends: R (>= 2.10.0), igraph (>= 0.6), stats, snow
Packaged: 2012-08-05 07:20:50 UTC; Administrator

Packaged: 2012-09-11 07:48:32 UTC; Administrator

Imports: igraph (>= 0.6), stats, graphics, methods, grDevices,

Description: Use pathway topology information to assign weight to pathway nodes.

Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
Description: It aims to find significant pathways through
network topology information. It has several advantages compared
with current pathway enrichment tools. First, pathway node instead
of single gene is taken as the basic unit when analysing networks
to meet the fact that genes must be constructed into complexes to
hold normal functions. Second, multiple network centrality measures are
applied simultaneously to measure importance of nodes from different
aspects to make a full view on the biological system. CePa extends
standard pathway enrichment methods, which include both over-representation
analysis procedure and gene-set analysis procedure.
Author: Zuguang Gu [aut, cre] (<https://orcid.org/0000-0002-7395-8709>)

Title: Identification and Analysis of ceRNA Regulation
Author: Mengying Zhang,Yongsheng Li,Juan Xu*,Xia Li*
Description: Provides several functions to identify and analyse miRNA sponge, including
popular methods for identifying miRNA sponge interactions, two types
of global ceRNA regulation prediction methods and three types of context-specific
prediction methods( Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based
on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data,
respectively. In addition, this package provides several network analysis modules
for viewing the constructed ceRNA-ceRNA network and analysis of the topological features.
biocViews: competing endogenous RNA (ceRNA),