Description: Provides methods for high-throughput adaptive immune
receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In
particular, immunoglobulin (Ig) sequence lineage reconstruction,
lineage topology analysis, diversity profiling, amino acid property

Description: Core functionality, lineage reconstruction, and diversity analysis,
and amino acid property analysis components of the Change-O tool suite.
Imports: dplyr, graphics, grid, igraph (>= 1.0.0), lazyeval, methods,
Collate: 'Alakazam.R' 'AminoAcids.R' 'Core.R' 'Diversity.R'

diversity profiling, and amino acid property analysis. Also provides
core functionality for other tools in the Change-O suite.

Imports: data.table (>= 1.9.4), dplyr, graphics, grid, igraph (>=
1.0.0), lazyeval, methods, Rcpp (>= 0.12.3), scales, seqinr,

methods, Rcpp (>= 0.12.10), readr, scales, seqinr, stats,

methods, progress, Rcpp (>= 0.12.11), readr, scales, seqinr,

Imports: ape, dplyr (>= 0.8.1), graphics, grid, igraph (>= 1.0.0),
lazyeval, Matrix, methods, progress, Rcpp (>= 0.12.12), readr,
rlang, scales, seqinr, stats, stringi, tibble, tidyr, utils

Authors@R: c(person("Jason", "Vander Heiden", role=c("cre", "aut"),
Imports: ape, dplyr (>= 0.8.3), graphics, grid, igraph (>= 1.0.0),
rlang, scales, seqinr, stats, stringi, tibble, tidyr (>=
Maintainer: Jason Vander Heiden <vanderheiden.jason@gene.com>

person("Jason", "Vander Heiden", role=c("cre", "aut"),

Imports: airr, ape, Biostrings, dplyr (>= 1.0), GenomicAlignments,
graphics, grid, igraph (>= 1.0.0), IRanges, lazyeval, Matrix,
methods, progress, Rcpp (>= 0.12.12), readr, rlang, scales,
seqinr, stats, stringi, tibble, tidyr (>= 1.0.0), utils
'Diversity.R' 'Deprecated.R' 'Fastq.R' 'Gene.R' 'Lineage.R'

Imports: airr (>= 1.3), ape, dplyr (>= 1.0), graphics, grid, igraph (>=
1.0), Matrix, methods, progress, Rcpp (>= 0.12.12), readr,
rlang, scales, seqinr, stats, stringi, tibble, tidyr (>= 1.0),
utils, Biostrings (>= 2.56.0), GenomicAlignments (>= 1.24.0),

readr, rlang, scales, seqinr, stats, stringi, tibble, tidyr (>=
1.0), utils, Biostrings (>= 2.56.0), GenomicAlignments (>=