Description: Access to the MBTA's performance API for R. Creates an easy-to-use
bundle of functions to work with all the built-in calls to the MBTA performance
API, and some to work with the GTFS-compatible API V3 which replaced some
functionality from the old performance API. Allows users to download realtime
tracking data in dataframe format that is manipulable in standard R analytics
functions. Pulls performance statistics in both realtime and for historical

Title: Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
Description: The MBmca package provides data sets and lightweight
utilities for nucleic acid melting curve analysis and

Depends: R (>= 3.0.0), robustbase (>= 0.9)

Description: The MBmca package provides data sets and lightweight utilities for nucleic acid melting curve analysis and presentation on microbead surfaces.

Authors@R: c(person("Stefan", "Roediger", role = c("aut", "cre"),
person("Michal", "Burdukiewicz", role = "ctb"))
Description: The MBmca package provides data sets and lightweight utilities for
nucleic acid melting curve analysis and presentation on microbead surfaces
but also for reactions in solution (e.g., qPCR).

Title: Nucleic Acid Melting Curve Analysis
Imports: chipPCR (>= 0.0.7), stats, utils
Description: Lightweight utilities for nucleic acid melting curve analysis are
important in life sciences and diagnostics. This software can be used for
the analysis and presentation of melting curve data from microbead-based
assays (surface melting curve analysis) and reactions in solution (e.g.,
quantitative PCR (qPCR), real-time isothermal Amplification). Further
information are described in detail in two publications in The R Journal [
Author: Stefan Roediger [cre, aut] (<https://orcid.org/0000-0002-1441-6512>),

Title: Translates information from netcdf files with MC2 output into
Author: Dave Conklin and Emilie Henderson
Description: Post processes MC2 output, especially for use by Path or ST-Sim.  MC2 (short for "MC1 version 2") is a dynamic global vegetation model (en.wikipedia.org/wiki/DGVM).  Path (essa.com/tools/path) and ST-Sim (www.apexrms.com) are state-and-transition model (STM) engines. MC2 has a user website at sites.google.com/site/mc1dgvmusers.  Since 2001, MC1 has been used to simulate changes in natural vegetation due to climate change at scales from regional to global.  In 2012, MC1 was reimplemented in C++ to make it faster and to reduce storage requirements.  This newer version is referred to as MC2, an abbreviation of "MC1 version 2".  Beginning in 2011, output from MC1 and MC2 has been used to inform regional state-and-transition model simulations by the U.S. Forest Service and the Washington State Department of Natural Resources.  Projects to date have involved study areas in central Oregon, the Olympic Peninsula, the Blue Mountains ecoregion, southwestern Oregon, and southeastern Oregon.  In the first of this series of projects, the netCDF output files from MC2 were manually post-processed, mostly in Excel, to produce input .csv files for the STM engines. Beginning with the second project, R scripts were used to automate the post-processing work.  These R scripts have been collected into the MC2toPath R-package.