Title: Visualise Clusterings at Different Resolutions
c(person("Luke", "Zappia", role = c("aut", "cre"),
person("Alicia", "Oshlack", role = c("aut"),
person("Andrea", "Rau", role = c("ctb"),
Description: Deciding what resolution to use can be a difficult question when
approaching a clustering analysis. One way to approach this problem is to
look at how samples move as the number of clusters increases. This package
allows you to produce clustering trees, a visualisation for interrogating
Imports: checkmate, igraph, dplyr, grid, ggplot2, viridis, methods,
Suggests: testthat, knitr, rmarkdown, SingleCellExperiment, Seurat,
Packaged: 2018-03-25 23:48:18 UTC; luke.zappia

Packaged: 2018-04-20 00:25:18 UTC; luke.zappia
Author: Luke Zappia [aut, cre] (<https://orcid.org/0000-0001-7744-8565>),

Packaged: 2018-06-24 05:48:58 UTC; luke.zappia

Packaged: 2018-07-09 04:30:44 UTC; luke.zappia

Packaged: 2018-07-10 05:06:05 UTC; luke.zappia

Packaged: 2019-02-24 09:51:49 UTC; luke.zappia

person("Paul", "Hoffman", role = c("ctb"),
Suggests: testthat, knitr, rmarkdown, SingleCellExperiment, Seurat (>=
2.3.0), covr, SummarizedExperiment, pkgdown, spelling
Packaged: 2019-04-18 00:11:13 UTC; luke.zappia

Packaged: 2019-08-19 06:01:58 UTC; luke.zappia

Suggests: testthat (>= 2.1.0), knitr, rmarkdown, SingleCellExperiment,
Seurat (>= 2.3.0), covr, SummarizedExperiment, pkgdown,

Packaged: 2020-06-12 15:55:05 UTC; luke.zappia

Packaged: 2021-11-08 09:40:45 UTC; luke.zappia

Packaged: 2022-06-25 20:24:31 UTC; luke.zappia

Maintainer: Dan S. Reznik <dreznik@gmail.com>
Description: Returns an edit-distance based clusterization of an input vector of strings.
Each cluster will contain a set of strings w/ small mutual edit-distance
(e.g., Levenshtein, optimum-sequence-alignment, Damerau-Levenshtein), as computed by
stringdist::stringdist(). The set of all mutual edit-distances is then used by
graph algorithms (from package 'igraph') to single out subsets of high connectivity.
Imports: magrittr, dplyr, stringi, stringr, stringdist, igraph,
assertthat, forcats, rlang, tidygraph, ggraph, ggplot2