person("Jacob", "Bien", email = "bien@cornell.edu", role = "aut"),
person("Ines", "Wilms", email = "i.wilms@maastrichtuniversity.nl", role = "aut"))
Description: Estimates VAR and VARX models with Structured Penalties using the methods developed by Nicholson et al (2017)<doi:10.1016/j.ijforecast.2017.01.003> and Nicholson et al (2020) <doi:10.48550/arXiv.1412.5250>.
Imports: MASS, zoo, Rcpp, stats, utils, grDevices, graphics, abind
Suggests: knitr, rmarkdown, gridExtra, expm, MCS, quantmod, codetools

Description: Estimates VAR and VARX models with Structured Penalties.

Maintainer: Kevin R. Coombes <krc@silicovore.com>
Description: Defines the functions used to compute the
bimodal index as defined by Wang et al. (2009)

Packaged: 2019-05-06 16:43:11 UTC; Kevin Coombes

Title: Calculation for Single Arm Group Sequential Test with Binary
Description: Consider an at-most-K-stage group sequential design with only an upper bound for the last analysis and non-binding lower bounds.With binary endpoint, two kinds of test can be applied, asymptotic test based on normal distribution and exact test based on binomial distribution. This package supports the computation of boundaries and conditional power for single-arm group sequential test with binary endpoint, via either asymptotic or exact test. The package also provides functions to obtain boundary crossing probabilities given the design.
BeiGene, Ltd. (Nasdaq: BGNE, HKEX: 06160) [cph]

Title: Processes Binary Data Obtained from Fragment Analysis
Authors@R: person("Clarke", "van Steenderen", email = "vsteenderen@gmail.com",
Description: A molecular genetics tool that processes binary data from fragment analysis, such as inter-simple sequence repeats (ISSRs) and amplified fragment length polymorphism (AFLP). It consolidates replicate sample pairs, outputs summary statistics, and produces hierarchical clustering trees and nMDS plots. This package was developed from the M.Sc. thesis entitled "A genetic analysis of the species and intraspecific lineages of Dactylopius Costa (Hemiptera:Dactylopiidae)" (van Steenderen, 2019, Rhodes University, Department of Zoology and Entomology, Center for Biological Control (CBC) <https://www.ru.ac.za/centreforbiologicalcontrol/>, Grahamstown, South Africa), <doi:10.13140/RG.2.2.28470.86083>. The GUI version of this package is available on the R Shiny online server at: <https://clarkevansteenderen.shinyapps.io/BINMAT/> , or it is accessible via GitHub by typing: shiny::runGitHub("BinMat", "CJMvS") into the console in R.
Imports: pvclust (>= 2.0), magrittr, MASS (>= 7.3), stats (>= 3.4.0),
Author: Clarke van Steenderen [aut, cre]
Maintainer: Clarke van Steenderen <vsteenderen@gmail.com>