Depends: R (>= 2.10), qtl, gtools, fields, RColorBrewer, lattice
Packaged: 2015-08-17 06:36:04 UTC; julian.taylor

Packaged: 2016-06-24 04:44:58 UTC; julian.taylor

Packaged: 2015-04-13 14:06:44 UTC; julian.taylor

Title: Bayesian Inference on Causal Genetic Variants using Affected
Description: This package allows to make inference on the properties of causal genetic
variants in linkage disequilibrium with genotyped markers. In a first step,
we select a subset of variants using a score statistic for affected
sib-pairs. In a second step, on the selected subset, we make
inference on causal genetic variants in the considered region.

person('Salvador', 'Gezan', , 'salvador.gezan@vsni.co.uk', role = c('aut', 'cre')),
person('Darren', 'Murray', , 'darren.murray@vsni.co.uk', role = 'aut'),
person('Amanda', 'Avelar de Oliveira', , 'support@vsni.co.uk', role = 'aut'),
person('Giovanni', 'Galli', , 'giovanni.galli@vsni.co.uk', role = 'aut'),
person(given = 'VSN International', role = 'cph')
Description: Presents a series of molecular and genetic routines in the R
environment with the aim of assisting in analytical pipelines before
and after the use of 'asreml' or another library to perform analyses such
as Genomic Selection or Genome-Wide Association Analyses.
Methods and examples are described in Gezan, Oliveira, Galli, and Murray (2022)
Imports: AGHmatrix, cowplot, crayon, data.table, ellipse, factoextra,
ggplot2, Matrix, methods, scattermore, stats, superheat, utils
Suggests: knitr, rmarkdown, spelling, testthat (>= 3.0.0)

Title: Applied Singular Spectrum Analysis (ASSA)
Description: Functions to model and decompose time series into principal components using singular spectrum analysis (de Carvalho and Rua (2017) <doi:10.1016/j.ijforecast.2015.09.004>; de Carvalho et al (2012) <doi:10.1016/j.econlet.2011.09.007>).
Authors@R: c(person("Miguel", "de Carvalho", role = c("aut", "cre"),
person("Gabriel", "Martos", role = "aut",
Maintainer: Miguel de Carvalho <miguel.decarvalho@ed.ac.uk>

Packaged: 2020-11-20 09:52:45 UTC; mdecarvalho