Suggests: class, magrittr, tidyverse, testthat, knitr, rmarkdown,

Imports: stats, utils, grDevices, MASS, loon.ggplot, tibble

Title: A package for performing loop decomposition of weighted directed
graphs in life cycle analysis, providing general network
plotting methods, and analyzing food chain properties in
Description: The program can perform loop analysis and plot network
structure,including minimum spanning tree, loop decomposition
of weighted directed graphs, and other network properties which
may be related to food chain properties in ecology.

Title: loop decomposition of weighted directed graphs for life cycle
analysis, providing flexbile network plotting methods, and
analyzing food chain properties in ecology
structure (especially for food webs),including minimum spanning
tree, loop decomposition of weighted directed graphs, and other
network properties which may be related to food chain

Title: Uses an Archive to Amend Previous Stages of a Pipe using Current
Description: Remedies a common problem in piping: not having access to
intermediate outputs of the pipe. Within a "loop", a piping intermediate
is  stored in a stack archive, data is processed, and then both the
stored intermediate and the current output are reintegrated using an
"ending" function. Two special ending functions are provided: amend and
insert. However, any ending function can be specified, including merge
functions, join functions, setNames(), etc. This framework allows the
following workflow: focus on a particular aspect or section of a
dataset, conduct specific operations, and then reintegrate changes into
Imports: plyr (>= 1.8.1), dplyr (>= 0.4.1), magrittr (>= 1.5), lazyeval

following work-flow: focus on a particular aspect or section of a
data set, conduct specific operations, and then reintegrate changes into

Title: Set of Functions to Use in Survival Analysis and in Data Science
Authors@R: c(person("André", "Veríssimo", email = "andre.verissimo@tecnico.ulisboa.pt", role = c("aut", "cre")),
person("Susana", "Vinga", email = "susanavinga@tecnico.ulisboa.pt", role = "aut"))
Description: Collection of functions to improve work-flow in survival analysis and data science.
The package features include: the generation of balanced datasets, live retrieval of
protein coding genes from two public databases, generation of random
matrix based on covariance matrix, cache function to store function results.
This work was supported by two grants from the Portuguese Foundation for Science
and technology, and the EU Commission under SOUND project.
Imports: biomaRt, digest, futile.options, ggfortify, ggplot2, graphics,
grDevices, MASS, methods, dplyr, reshape2, rlang, stats
Suggests: knitr, rmarkdown, devtools, roxygen2, testthat, survival