Suggests: covr, testthat (>= 2.1.0), knitr, rmarkdown, scdhlm, mlmRev,

Title: Fit negative binomial mixed-effect regression model.
Description: Fit negative binomial mixed-effect regression model. For
the distribution of subject-specific random intercept,the gamma
or log-normal distributions or semi-parametric procedure are
allowed. For the safety monitoring, subject-specific
conditional probability index can be computed. For details, see
Zhao, Y., Li, D.K.B., Petkau, J.A., Riddehough, A. &
Traboulsee, A.  Detection of unusually large increases in MRI
lesion counts in multiple sclerosis patients.

Description: Fit negative binomial mixed-effect regression model. For the distribution of subject-specific random intercept, a gamma or log-normal distributions or semi-parametric procedure are allowed. For the safety monitoring, subject-specific conditional probability index can be computed. For details, see  Zhao, Y., Li, D.K.B., Petkau, J.A., Riddehough, A. & Traboulsee, A.  Detection of unusual increases in MRI lesion counts in multiple sclerosis patients.

Title: Compute the Personalized Activity Index Based on a Negative
Author: Yinshan Zhao and Yumi Kondo (with contributions from Steven G. Johnson, Rudolf Schuerer and Brian Gough on the integration subroutines)
Description: The functions in this package implement the safety monitoring procedures proposed in the paper titled "Detection of unusual increases in MRI lesion counts in individual multiple sclerosis patients" by Zhao, Y., Li, D.K.B., Petkau, A.J., Riddehough, A., Traboulsee, A., published in Journal of the American Statistical Association in 2013. The procedure first models longitudinally collected count variables with a negative binomial mixed-effect regression model. To account for the correlation among repeated measures from the same patient, the model has subject-specific random intercept, which can be modelled with a gamma or log-normal distributions. One can also choose the semi-parametric option which does not assume any distribution for the random effect. These mixed-effect models could be useful beyond the application of the safety monitoring. The maximum likelihood methods are used to estimate the unknown fixed effect parameters of the model. Based on the fitted model, the personalized activity index is computed for each patient. Lastly, this package is companion to R package lmeNBBayes, which contains the functions to compute the Personalized Activity Index in Bayesian framework.
Copyright: The portion of numerical integration is based on Cubature,
Copyright (c) 2005-2013 Steven G. Johnson
turn is based on HIntLib (also distributed under * the GNU GPL,
v2 or later), copyright (c) 2002-2005 Rudolf Schuerer and GNU
GSL (also distributed under the GNU GPL, v2 or later),
Packaged: 2015-02-02 20:00:39 UTC; yumikondo