Title: Nonparametric Smoothing for contaminated data using
Description: This package contains a collection of functions to to perform nonparametric deconvolution using simulation extrapolation (SIMEX). We propose an estimator that adopts the SIMEX idea but bypasses the simulation step in the original SIMEX algorithm. There is no bandwidth parameter and the estimate is determined by appropriately selecting "design points". See details in: Wang, X.F., Sun, J. and Fan, Z. (2011). Deconvolution density estimation with heteroscedastic errors using SIMEX.

Title: Data sets from "Nonlinear Regression Analysis and Its Applications"
Author:  R port by Douglas Bates <bates@stat.wisc.edu>
Description: Datasets from Bates and Watts (1988) "Nonlinear Regression
Analysis and Its Applications" with sample code.
Packaged: Wed Jan 31 23:19:07 2007; bates

Packaged: Fri Feb  2 21:00:18 2007; bates

Packaged: Fri Feb 23 23:59:40 2007; bates

Packaged: Mon Feb 26 21:19:40 2007; bates

Packaged: Mon Mar  5 20:51:48 2007; bates

Packaged: Thu Mar 22 08:02:43 2007; bates

Title: Data sets from "Nonlinear Regression Analysis and Its
Author: R port by Douglas Bates <bates@stat.wisc.edu>

Title: Metrics for Multiple Testing with Correlated Outcomes
Description: Implements methods in Mathur and VanderWeele (in preparation) to characterize global evidence strength across W correlated ordinary least squares (OLS) hypothesis tests. Specifically, uses resampling to estimate a null interval for the total number of rejections in, for example, 95% of samples generated with no associations (the global null), the excess hits (the difference between the observed number of rejections and the upper limit of the null interval), and a test of the global null based on the number of rejections.
Imports: stats, doParallel, matrixcalc, StepwiseTest, foreach, mvtnorm

Title: Post-normalization of total copy numbers
Author: Maria Ortiz-Estevez <mortiz@ceit.es>, Ander Aranburu <aaranburu@ceit.es>, Angel Rubio <arubio@ceit.es>
Depends: R (>= 2.11.1), R.methodsS3 (>= 1.2.0), MASS, matrixStats (>=
Description: Post-normalization of total copy-number estimates.