Title: Vignette Engine Wrapping Jupyter Notebooks
Calls the 'Jupyter' script 'nbconvert' to create vignettes from
notebooks. Those notebooks ('.ipynb' files) are files containing rich text,
code, and its output. Code cells can be edited and evaluated interactively.
See <https://jupyter.org/> for more information.
SystemRequirements: pandoc, jupyter, jupyter nbconvert ("nbconvert"

Description: Catalogue of NBER working papers published between June 1973 and June 2021.
Author: Benjamin Davies [aut, cre] (<https://orcid.org/0000-0002-1749-4567>)

Description: Catalogue of NBER working papers published between June 1973 and December 2021.

Title: Negative Binomial Factor Regression Models ('nbfar')
Description: We developed a negative binomial factor regression model to estimate structured (sparse) associations between a feature matrix X and overdispersed count data Y.  With 'nbfar', microbiome count data Y can be used, for example, to associate host or environmental covariates with microbial abundances. Currently, two models are available: a) Negative Binomial reduced rank regression (NB-RRR), b) Negative Binomial co-sparse factor regression (NB-FAR). Please refer the manuscript 'Mishra, A. K., & Müller, C. L. (2021). Negative Binomial factor regression with application to microbiome data analysis. bioRxiv.' for more details.
Imports: Rcpp (>= 0.12.9), MASS, magrittr, rrpack, glmnet,

Description: Tools to run simple direct gravitational N-body simulations. It can access different external N-body simulators, but also has a simple built-in default simulator. This default simulator uses a variable block time step and lets the user choose between a range of integrators, including 4th and 6th order integrators for high-accuracy simulations. Basic top-hat smoothing is available as an option. The code also allows the definition of background particles that are fixed or in uniform motion, not subject to acceleration by other particles.

Title: functions for non-bipartite optimal matching
Description: solves Mahalnobis distance matrices