Title: Bayesian calculation of gene-specific FST from genomic SNP data
Description: GeneFeST is a genome scan method to detect outlier loci (genes) which are under balancing or directional selection.

Title: Relevance or Dependency network and signaling pathway discovery
Description: The package implements a two-stage algorithm to screen co-expressed
gene paris with controlled FDR and MAS. The packages also constructs relevance
networks and clusters co-expressed genes (both similarly co-expressed and transitively
Packaged: Fri Feb  4 11:58:24 2005; hornik

gene pairs with controlled False Discovery Rate (FDR) and Minimum Acceptable Strength
(MAS). The packages also constructs relevance networks and clusters co-expressed
genes (both similarly co-expressed and transitively co-expressed). In addtion, it
includes new correlation estimators and non-parametric statistical inference procedure
Depends: R (>= 1.9.0), e1071, GeneTS, graph, RBGL
Packaged: Thu Jun  9 15:45:02 2005; root

Depends: R (>= 1.9.0), e1071, graph, RBGL

Title: Modeling and Inferring Gene Networks
Author: Rainer Opgen-Rhein, Juliane Schaefer, and
Suggests: graph (>= 1.4.0), Rgraphviz (>= 1.4.0)
Description: GeneNet is a package for analyzing gene expression
(time series) data with focus on the inference of gene networks.
In particular, GeneNet implements the methods of Schaefer and
Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006)
for learning large-scale gene association networks.
GeneNet uses the "graph" and "Rgraphviz" packages, available from
Packaged: Wed Aug  9 14:57:39 2006; strimmer

Packaged: Thu Aug 17 21:28:07 2006; strimmer

For plotting the gene networks the package contains functions
Packaged: Tue Feb 20 14:09:27 2007; strimmer

Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007)
for learning large-scale gene association networks (including
Packaged: Sat May 26 12:08:31 2007; strimmer

Packaged: Sun Oct 21 14:21:53 2007; strimmer

Author: Juliane Schaefer, Rainer Opgen-Rhein, and

Packaged: Sun Aug 17 22:06:12 2008; strimmer