Package: optpart
Version: 2.1-0
Date: 2013-01-22
Title: Optimal partitioning of similarity relations
Author: David W. Roberts <droberts@montana.edu>
Maintainer: David W. Roberts <droberts@montana.edu>
Depends: cluster, labdsv, MASS, plotrix
Suggests: tree
Description: The package contains a set of algorithms for creating
partitions and coverings of objects largely based on operations
on (dis)similarity relations (or matrices). There are several
iterative re-assignment algorithms optimizing different
goodness-of-clustering criteria.  In addition, there are
covering algorithms 'clique' which derives maximal cliques, and
'maxpact' which creates a covering of maximally compact sets.
Graphical analyses and conversion routines are also included.
License: GPL (>= 2)
URL: http://ecology.msu.montana.edu/labdsv/R
Packaged: 2013-01-22 11:20:14 UTC; dvrbts
Repository: CRAN
Date/Publication: 2013-01-22 18:58:29

Title: Optimal Partitioning of Similarity Relations
Description: Contains a set of algorithms for creating

Package: optpart
Version: 3.0-3
Title: Optimal Partitioning of Similarity Relations
Author: David W. Roberts <droberts@montana.edu>
Maintainer: David W. Roberts <droberts@montana.edu>
Depends: cluster, labdsv, MASS, plotrix
Suggests: tree
Description: Contains a set of algorithms for creating
partitions and coverings of objects largely based on operations
on (dis)similarity relations (or matrices). There are several
iterative re-assignment algorithms optimizing different
goodness-of-clustering criteria.  In addition, there are
covering algorithms 'clique' which derives maximal cliques, and
'maxpact' which creates a covering of maximally compact sets.
Graphical analyses and conversion routines are also included.
License: GPL (>= 2)
URL: http://ecology.msu.montana.edu/labdsv/R
NeedsCompilation: yes
Packaged: 2020-01-17 13:31:54 UTC; dvrbts
Repository: CRAN
Date/Publication: 2020-01-19 17:10:02 UTC

Title: Optimal Row-Column Designs for Two-Colour cDNA Microarray
Author: Legesse Kassa Debusho, Dibaba Bayisa Gemechu, and Linda Haines
Depends: R (>= 3.3.2), MASS, Matrix, igraph, tcltk
Description: Computes A-, MV-, D- and E-optimal or near-optimal row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all pairwise treatment contrasts. The algorithms used in this package are based on the array exchange and treatment exchange algorithms adopted from Debusho, Gemechu and Haines (2016, unpublished) algorithms after adjusting for the row-column designs setup. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.
Packaged: 2017-04-12 11:01:58 UTC; Dibaba B Gemechu