Title: Principal Tensor Analysis on k Modes
Author: Didier G. Leibovici <didier.leibovici@nottingham.ac.uk>
Maintainer: Didier G. Leibovici <c3s2i@free.fr>

Packaged: 2012-03-08 14:14:14 UTC; didierleibovici

Maintainer: Didier G. Leibovici <GeotRYcs@gmail.com>

Author: Didier G. Leibovici (2010) <doi:10.18637/jss.v034.i10>

Description: A tool to draw inference in personalized medicine regimes

Author: Adam Kapelner, Alina Levine & Justin Bleich
Description: We provide inference for personalized medicine models. Namely, we answer the questions: (1) how much better does a purported personalized recommendation engine for treatments do over a business-as-usual approach and (2) is that difference statistically significant?
Imports: foreach, parallel, doParallel, graphics, grDevices, stats,

Title: PTE and RP for Optimally-Transformed Surrogate
Authors@R: c(person("Layla", "Parast", role = c("cre"), email = "parast@austin.utexas.edu"), person("Xuan", "Wang", role = c("aut")))
Description: Evaluates the strength of a surrogate marker by estimating the proportion of treatment effect explained (PTE) and relative power(RP) for the optimally-transformed version of the surrogate.  Details available in Wang et al (2022) <arXiv:2209.08414>.

Imports: extraDistr, SuppDists, actuar, numDeriv
Description: A collection of functions to simulate, estimate and forecast a wide range of regression based dynamic models for positive time series.
This package implements the results presented in Prass, T.S.; Carlos, J.H.; Taufemback, C.G. and Pumi, G. (2022). "Positive Time Series Regression" <arXiv:2201.03667>.

Title: Quality Report Generation for MaxQuant Results
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (see <http://www.maxquant.org>).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.
Imports: data.table, ggplot2, ggdendro, graphics, grid, gridExtra,
grDevices, gtable, methods, plyr, proto, RColorBrewer,
reshape2, rmarkdown, seqinr, stats, utils, yaml