Title: Simple GUI for graph based visualization of cluster of DNA
Description: SeqGrapheR package provide interactive GUI for
visualization of DNA sequence clusters. Detailes and principles
of usage are described in user manual and (2010 BMC
Bioinformatics 11:378) ,For full functionallity installed NCBI

Description: SeqGrapheR package provide interactive GUI for visualization of DNA sequence clusters. Details and principles of usage are described in user manual and (2010 BMC Bioinformatics 11:378) ,For full functionality installed NCBI blast is required

Title: Simple GUI for Graph Based Visualization of Cluster of DNA
Description: The SeqGrapheR package provide interactive GUI for visualization of DNA sequence clusters. Details and principles of usage are described in user manual and (2010 BMC Bioinformatics 11:378). For full functionality installed NCBI blast is required.

Author: Fouad Yousif, Xihui Lin, Fan Fan, Christopher Lalansingh
Description: Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. SeqKat reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Upon publication of the paper describing the methods used in this package, a reference will be added here.
Depends: R (>= 2.15.1), foreach, doParallel
Suggests: testthat, doMC, rmarkdown, knitr
Packaged: 2017-06-25 06:22:12 UTC; clalansingh

Description: Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. This package reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Yousif, F. et al.; The Origins and Consequences of Localized and Global Somatic Hypermutation; Biorxiv 2018 <doi:10.1101/287839>.
Packaged: 2018-03-28 15:14:26 UTC; clalansingh