Authors@R: c( person("Hervé", "Perdry", role = c("cre", "aut", "cph"), email = "herve.perdry@u-psud.fr"),

Description: Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML). Dandine et al <doi:10.1159/000488519>.

Title: Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Maintainer: Ian D. Buller <ian.buller@nih.gov>
Description: Estimates statistically significant marker combination values within
which one immunologically distinctive group (i.e., disease case) is more associated than
another group (i.e., healthy control), successively, using various combinations (i.e.,
"gates") of markers to examine features of cells that may be different between
groups. For a two-group comparison, the 'gateR' package uses the spatial relative risk
function that is estimated using the 'sparr' package. Details about the 'sparr' package
methods can be found in the tutorial: Davies et al. (2018) <doi:10.1002/sim.7577>. Details
about kernel density estimation can be found in J. F. Bithell (1990) <doi:10.1002/sim.4780090616>.
More information about relative risk functions using kernel density estimation can be
Imports: fields, graphics, grDevices, lifecycle, raster, rlang, sparr,
SpatialPack, spatstat.geom, stats, tibble, tools, utils
Suggests: dplyr, flowWorkspaceData, ncdfFlow, R.rsp, spelling,

function estimated using the 'sparr' package. Details about the 'sparr' package
Suggests: dplyr, R.rsp, spelling, testthat, usethis, utils

Description: Estimates statistically significant fluorescent marker combination values within
"gates") of fluorescent markers to examine features of cells that may be different between
Imports: fields, graphics, grDevices, maptools, pgirmess, raster, sp,
Suggests: flowWorkspaceData, knitr, ncdfFlow, R.rsp, spelling, testthat

Imports: fields, graphics, grDevices, lifecycle, raster, sparr,
SpatialPack, spatstat.geom, stats, tibble, utils

Title: Easily Gate or Select Points on a Scatter Plot
Description: Allows user to choose/gate a region on the plot and returns points