Packaged: 2020-04-23 23:25:21 UTC; jakewendt

Title: API Client for the MG-RAST Server of the US DOE KBase
Description: Convenience Functions for R Language Access to the v.1 API of the MG-RAST Metagenome Annotation Server, part of the US Department of Energy (DOE) Systems Biology Knowledge Base (KBase).

Title: Multi-Group Sparse Discriminant Analysis
Description: Implements Multi-Group Sparse Discriminant Analysis proposal of 'I.Gaynanova, J.Booth and M.Wells (2014), Simultaneous sparse estimation of canonical vectors in the p>>N setting'
Packaged: 2014-07-08 15:21:34 UTC; irinagain

Packaged: 2014-08-28 19:05:45 UTC; irinagain

Description: Implements Multi-Group Sparse Discriminant Analysis proposal of 'I.Gaynanova, J.Booth and M.Wells (2015), Simultaneous sparse estimation of canonical vectors in the p>>N setting'.
Packaged: 2015-09-01 21:38:13 UTC; irinagain

Description: Implements Multi-Group Sparse Discriminant Analysis proposal of I.Gaynanova, J.Booth and M.Wells (2015), Simultaneous sparse estimation of canonical vectors in the p>>N setting, JASA, to appear.

Description: Implements Multi-Group Sparse Discriminant Analysis proposal of I.Gaynanova, J.Booth and M.Wells (2015), Simultaneous sparse estimation of canonical vectors in the p>>N setting, JASA, to appear,[DOI:10.1080/01621459.2015.1034318].

Description: Implements Multi-Group Sparse Discriminant Analysis proposal of I.Gaynanova, J.Booth and M.Wells (2016), Simultaneous sparse estimation of canonical vectors in the p>>N setting, JASA <doi:10.1080/01621459.2015.1034318>.

Title: Analysis of MHC Data in Non-Model Species
Authors@R: person("Jacob", "Roved", email = "jacob.roved@biol.lu.se",
Description: Nine tools for analysis of major histocompatibility complex (MHC) data in non-
model species. The functions are tailored for amplicon data sets that have been
filtered using the 'dada2' method (for more information visit
<https://benjjneb.github.io/dada2>), but even other data sets can be analysed,
if the data tables are formatted according to the description in each function.
The ReplMatch() function matches replicates in data sets in order to evaluate
The GetReplTable() and GetReplStats() functions perform such an evaluation.
The HpltFind() function infers putative haplotypes from families in the data
set. The GetHpltTable() and GetHpltStats() functions evaluate the accuracy of
The PapaDiv() function compares parent pairs in the data set and calculate their
joint MHC diversity, taking into account sequence variants that occur in both
The CreateFas() function creates a fasta file with all the sequences in the data
The CreateSamplesFas() function creates a fasta file for each sample in the data
Packaged: 2017-09-29 15:08:51 UTC; jacobroved