Title: CRISPR Screen and Gene Expression Differential Analysis
Description: Provides analytical methods for analyzing CRISPR screen data
at different levels of gene expression. Multi-component normal mixture models
and EM algorithms are used for modeling.

Imports: stats, mixtools, ggplot2, dplyr, ggsci, ggridges, ggprism

Title: Simple and Efficient Pipeline for Electronic Health Record
Description: Streamlined annotation pipeline for collection and aggregation of time-to-event data in retrospective clinical studies. 'CEDARS' aims to systematize and accelerate the review of electronic health record (EHR) corpora. It accomplishes those goals by deploying natural language processing as a tool to assist detection and characterization of clinical events by human abstractors. The online user manual presents the necessary steps to install 'CEDARS', process EHR corpora and obtain clinical event dates: <https://cedars.io>.
Authors@R: person("Simon", "Mantha", email = "smantha@cedars.io", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4277-5261"))
Imports: fastmatch, jsonlite, mongolite, parallel, readr, shiny,
Author: Simon Mantha [aut, cre] (<https://orcid.org/0000-0003-4277-5261>)

Title: Combinatorial Efficient Global Optimization
Description: Model building, surrogate model
based optimization and Efficient Global Optimization in combinatorial

Imports: MASS, stats, DEoptim, graphics, quadprog, Matrix, expm

Imports: MASS, stats, DEoptim, graphics, quadprog, Matrix, methods,

Title: Climate and Ecological Niche Factor Analysis
Maintainer: D. Scott Rinnan <rinnan@u.washington.edu>
Description: Tools for climate- and ecological-niche factor analysis of spatial data, including methods for visualization of spatial variability of species sensitivity, exposure, and vulnerability to climate change. Processing of large files and parallel methods are supported. Ecological-niche factor analysis is described in Hirzel et al. (2002) <doi:10.2307/3071784> and Basille et al. (2008) <doi:10.1016/j.ecolmodel.2007.09.006>.
Imports: doSNOW (>= 1.0.16), foreach (>= 1.4.4), graphics, grDevices,
magrittr, methods, parallel (>= 3.3.3), pbapply (>= 1.3.3),
Collate: 'CENFA.R' 'GLcenfa-class.R' 'GLcenfa.R' 'GLdeparture-class.R'
'enfa.R' 'exposure_map.R' 'names.R' 'parCov.R' 'parScale.R'