accumulated local effects plots described by Apley (2018) <arXiv:1612.08468>,
knitr, mlr, covr, rmarkdown, devtools, doParallel, ALEPlot,

foreach, yaImpute, prediction, Formula, gridExtra

Title: Candidate Prescriptions Discovery Based on Pathway Fingerprint
Description: The pathway fingerprint is a method to indicate the profile of significant pathways being influenced by drugs, which may hint drug functions. Through the similarity of pathway fingerprints, the potential relationship between disease and prescription can be found. Ye (2012) <doi: 10.1007/s13238-012-2011-z>.
Imports: igraph, proxyC, pbapply, Matrix, magrittr, stats, utils,

clusterProfiler, GSEABase, methods, ggplot2, visNetwork,
RobustRankAggreg, reshape2, corrr, GSVA, Boruta

RobustRankAggreg, reshape2, corrr, GSVA, Boruta, limma
Author: Yuanlong Hu [aut, cre] (<https://orcid.org/0000-0003-1933-7570>)

Title: Poly-Pharmacology Toolkit for Traditional Chinese Medicine
Description: Toolkit for Poly-pharmacology Research of Traditional Chinese Medicine. Based on the
biological descriptors and drug-disease interaction networks, it can
analyze the potential poly-pharmacological mechanisms of Traditional Chinese Medicine and be
used for drug-repositioning in Traditional Chinese Medicine.
Imports: clusterProfiler, DOSE, dplyr, methods, magrittr, Matrix,
openxlsx, org.Hs.eg.db, pbapply, proxyC, purrr, rlang (>=
1.0.2), stats, utils, visNetwork (>= 0.3.1), arules, ggplot2,

Title: Item Response Models for Multiple Ratings
Author: Alexander Robitzsch [aut, cre], Jan Steinfeld [aut]
Implements some item response models for multiple
ratings, including the hierarchical rater model,
conditional maximum likelihood estimation of linear
logistic partial credit model and a wrapper function
Imports: methods, stats, graphics, Rcpp, coda, CDM, sirt, psychotools
Packaged: 2015-09-13 17:52:32 UTC; robitzsch

Packaged: 2015-11-04 16:25:57 UTC; robitzsch

Alexander Robitzsch [aut, cre], Jan Steinfeld [aut]
Imports: CDM, coda, graphics, methods, psychotools, Rcpp, sirt, stats