Depends: methods,utils, R (>= 2.6.0), pedigree (>= 1.2)
Description: Simulate haplotypes through meioses. Allows specification

Authors@R: c(person("Albart", "Coster", role = c("aut", "cre"),
person("John", "Bastiaansen", role = "aut",

Packaged: 2022-08-13 20:53:01 UTC; Gebruiker

Depends: methods,utils, R (>= 2.6.0), pedigree (>= 1.1)

Title: Graphical tests for Hardy-Weinberg equilibrium
Description: Package HardyWeinberg is a package for exploring
bi-allelic marker data. It focuses on the graphical
representation of the results of tests for Hardy-Weinberg equlibrium
in a ternary plot. Routines for several tests for Hardy-Weinberg equilibrium

representation of the results of tests for Hardy-Weinberg
equlibrium in a ternary plot. Routines for several tests for
Hardy-Weinberg equilibrium are included in the package.

Depends: R (>= 1.8.0), graphics, stats, mice
representation of the results of tests for Hardy-Weinberg equilibrium

are included in the package. Procedures for handling missing genotype

Title: Graphical Tests for Hardy-Weinberg Equilibrium
Description: Contains tools for exploring Hardy-Weinberg equilibrium for
diallelic genetic marker data. All classical tests (chi-square, exact,
likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium
are included in the package, as well as functions for power computation and
for the simulation of marker data under equilibrium and disequilibrium.
Functions for testing equilibrium in the presence of missing data by
using multiple imputation are also provided. Implements several graphics
for exploring the equilibrium status of a large set of diallelic markers:
ternary plots with acceptance regions, log-ratio plots and Q-Q plots.

Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Routines for dealing with markers on the X-chromosome are included.

Authors@R: c(person("Jan", "Graffelman", role = c("aut", "cre"), email = "jan.graffelman@upc.edu"),
person("Christopher", "Chang", role = "ctb", email = "chrchang523@gmail.com"),
person("Xavi", "Puig", role = "ctb", email = "xavier.puig@upc.edu"),
person("Jan", "Wigginton", role = "ctb"))
Description: Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots.