Suggests: spelling (>= 2.1), RLumShiny (>= 0.2.2), plotly (>= 4.9.0),
rmarkdown (>= 1.12), rstudioapi (>= 0.7), rjags (>= 4-8), coda

Title: Multi-Modal Similarity Matrix Factorization for Integrative
Authors@R: person("Xiaoyao", "Yin", email = "yinxy1992@sina.com", role = c("aut", "cre"))
Description: A new method to implement clustering from multiple modality data of certain samples,
the function M2SMF() jointly factorizes multiple similarity matrices into a shared sub-matrix
and several modality private sub-matrices, which is further used for clustering. Along with
this method, we also provide function to calculate the similarity matrix and function to
evaluate the best cluster number from the original data.

Title: Multi-Modal Similarity Matrix Joint Factorization
the function M2SMjF() jointly factorizes multiple similarity matrices into a shared sub-matrix

Description: This package contains functions to read in and manipulate
air quality model output from Models3-formatted files.  This
format is used by the Community Multiscale Air Quaility (CMAQ)

Title: Data from the M4 Time Series Forecasting Competition
Description: The 10.000 time series from the M4 time series forecasting
competition, including print and plot functions.
Authors@R: person("Souhaib", "BenTaieb", email = "souhaib.bentaieb@monash.edu", role = c("aut", "cre"))

Title: Analysis of Alternative Polyadenylation Using 3' End-Linked
Description: A computational method developed for model-based analysis of alternative polyadenylation (APA) using 3' end-linked reads. It accurately assigns 3' RNA-seq reads to polyA sites through statistical modeling, and generates multiple statistics for APA analysis. Please also see Li WV, Zheng D, Wang R, Tian B (2021) <doi:10.1101/2021.03.21.436343>.
Imports: parallel, GenomicRanges, GenomicAlignments, GenomicFeatures,
GenomeInfoDb, stats, utils, Rsamtools, IRanges, MASS
Author: Wei Vivian Li [aut, cre] (<https://orcid.org/0000-0002-2087-2709>)
Maintainer: Wei Vivian Li <vivian.li@rutgers.edu>