Title: Optimal Two-Period Multiarm Platform Design with New
Experimental Arms Added During the Trial
Description: Design parameters of the optimal two-period multiarm platform design
(controlling for either family-wise error rate or pair-wise error rate) can be calculated
using this package, allowing pre-planned deferred arms to be added during the trial. More
details about the design method can be found in the paper: Pan, H., Yuan, X. and Ye, J.
(2022) "An optimal two-period multiarm platform design with new experimental arms added
during the trial". Manuscript submitted for publication. For additional references: Dunnett,

Title: Single-Cell Immune Repertoire and Gene Expression Analysis
Description: We present 'Platypus', an open-source software platform providing a user-friendly interface to investigate B-cell receptor and T-cell receptor repertoires from scSeq experiments. 'Platypus' provides a framework to automate and ease the analysis of single-cell immune repertoires while also incorporating transcriptional information involving unsupervised clustering, gene expression and gene ontology (Yermanos A, et al (2021) <doi:10.1093/nargab/lqab023>).
Authors@R: c(person("Alexander", "Yermanos", role = c("aut", "cre"), email = "ayermanos@gmail.com"),
person("Andreas", "Agrafiotis", role = "ctb"),
person("Raphael", "Kuhn", role = "ctb"),
person("Victor", "Kreiner", role = "ctb"),
person("Damiano", "Robbiani", role = "ctb"),
person("Josephine", "Yates", role = "ctb"),
person("Chrysa", "Papadopoulou", role = "ctb"),
person("Cédric", "Weber", role = "ctb"),
person("Danielle", "Shlesinger", role = "ctb"),
person("Raphael", "Dizerens", role = "ctb"))
Imports: BiocGenerics, Biostrings, dplyr, ggplot2, knitr, jsonlite,
Matrix, plyr, reshape2, rmarkdown, seqinr, Seurat,
SeuratObject, stringr, tibble, tidyr, utils, useful
Suggests: AnnotationDbi, ape, circlize, cowplot, data.table,
doParallel, fda.usc, fgsea, ggrepel, ggridges, ggseqlogo, grid,
gridExtra, harmony, igraph, IRanges, limma, keras, methods,
msigdbr, org.Mm.eg.db, pheatmap, phytools, purrr, scales,
SummarizedExperiment, stringdist, tensorflow, vegan, testthat