Authors@R: person("Elgar", "Teo", email = "elgarteo@connect.hku.hk",

Description: Calculates the co-ranking matrix to assess the
Imports: methods, graphics, stats, Rtsne, scatterplot3d
'lcmc.R' 'criteria.R' 'image.R' 'rankmatrix.R' 'submatrix.R'

Suggests: testthat, knitr, rmarkdown, Rtsne, scatterplot3d

Title: A Framework for Coalescent Simulation
person('Paul', 'Staab', , 'develop@paulstaab.de', role=c('aut', 'cre', 'cph')),
Description: Coalescent simulators can rapidly simulate biological sequences
evolving according to a given model of evolution.
This package allows to specify such models, transparently calls a suitable
simulator, parses the results and calculates additional summary statistics.
It supports the simulators 'ms', 'msms' and 'scrm' and can simulate
finite-sites mutation models by combining the simulators with the program
Suggests: abc (>= 2.0), knitr, rmarkdown, testthat (>= 0.10.0)
LinkingTo: Rcpp, RcppArmadillo (>= 0.3.810.0)
Collate: 'RcppExports.R' 'cache.R' 'coala.R' 'feature.R'

Imports: assertthat (>= 0.1), methods, parallel, R6 (>= 2.0.1), Rcpp

You can use this package to specify such models, to conduct the simulations
and to calculate additional statistics from the results.
It relies on existing simulators for doing the simulation, and currently
supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites
mutation models by combining the simulators with the program 'seq-gen'.
Suggests: abc (>= 2.0), knitr, rmarkdown, testthat (>= 0.11.0)

person('Paul', 'Staab', , 'develop@paulstaab.de', role=c('aut', 'cre')),
person('Dirk', 'Metzler', , 'metzler@bio.lmu.de', role=c('aut', 'ths'))
Suggests: abc (>= 2.0), knitr, PopGenome (>= 2.1.0), phyclust (>=

Collate: 'RcppExports.R' 'cache.R' 'coala.R' 'model.R' 'feature.R'

person('Dirk', 'Metzler', , 'metzler@bio.lmu.de', role=c('aut', 'ths')),
person('Jorge E.', 'Amaya Romero', role = 'ctb'))
Imports: assertthat (>= 0.1), digest, methods, parallel, R6 (>= 2.0.1),

Suggests: abc (>= 2.0), knitr, phyclust (>= 0.1-16), rmarkdown,