Description: Implements the item based collaborative filtering (IBCF) method for continues phenotypes in the context of plant breeding where data are collected for various traits that were studied in various environments proposed by Montesinos-López et al. (2017) <doi:10.1534/g3.117.300309>.
Packaged: 2018-02-22 03:55:08 UTC; Francisco

Packaged: 2018-11-22 17:19:34 UTC; Francisco

Title: Convert Between Different IBD-State Labelling Schemes
Description: Convert "label", "lexicographic", "jacquard" and "vec", full state description vector. All conversions are done to and from "label", as used in IBD_Haplo. More information regarding IBD_Haplo can be found at http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml.

Title: Functions for the Analysis of IBD Haplo output
Description: IBDhaploRtools consists of several functions to analyze,
plot, and store the output of running IBD_Haplo software
package. More information regarding IBD_Haplo can be found at

Description: IBDhaploRtools consists of several functions to analyze, plot, and store the output of running IBD_Haplo software package. More information regarding IBD_Haplo can be found at www.stat.washington.edu/thompson/Genepi/pangaea.shtml.

Title: Functions for the Analysis of IBD Haplo Output
Description: Functions to analyze, plot, and store the output of running IBD_Haplo software package. More information regarding IBD_Haplo can be found at http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml.

Title: Simulation of chromosomal regions shared by related individuals.
Description: Simulates phased diploid DNA-strands for each pedigree
member pedigree, either by unconditional "gene dropping" or
conditional on a specified IBD pattern. Regions compatible with
user-defined IBD patterns (possibly different from the
conditional patterns) are detected and summary statics
computed. Each meioses in the pedigree is simulated from the
latest Decode recombination map of the human genome (Kong et
al, 2010), and a four stranded chi squared model as the basis