Title: Constrained Multivariate Least Squares
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Description: Solves multivariate least squares (MLS) problems subject to constraints on the coefficients, e.g., non-negativity, orthogonality, equality, inequality, monotonicity, unimodality, smoothness, etc. Includes flexible functions for solving MLS problems subject to user-specified equality and/or inequality constraints, as well as a wrapper function that implements 24 common constraint options. Also does k-fold or generalized cross-validation to tune constraint options for MLS problems. See ten Berge (1993, ISBN:9789066950832) for an overview of MLS problems, and see Goldfarb and Idnani (1983) <doi:10.1007/BF02591962> for a discussion of the underlying quadratic programming algorithm.

Description: A compositional mediation model for continuous outcome and binary outcomes to deal with mediators that are compositional data. Lin, Ziqiang et al. (2022) <doi:10.1016/j.jad.2021.12.019>.

Title: Control Charts for Conway-Maxwell-Poisson Distribution
Author: Kimberly Sellers <kfs7@georgetown.edu> ; Luis Costa <lc436@georgetown.edu>
Description: The main purpose of this package is to juxtapose the different control limits obtained by modelling a data set through the COM-Poisson distribution vs. the classical Poisson distribution. Accordingly, this package offers the ability to compute the COM-Poisson parameter estimates and plot associated Shewhart control charts for a given data set.

Title: Interactive Document for Working with Confusion Matrix
Description: An interactive document on  the topic of confusion matrix analysis using 'rmarkdown' and 'shiny' packages. Runtime examples are provided in the package function as well as at <https://predanalyticssessions1.shinyapps.io/ConfusionMatrixShiny/>.
Packaged: 2019-10-21 10:23:30 UTC; KARTIKEYA

Title: Representation Tool For Output Of Connectivity Map (CMap)
Author: Raphaël Bonnet [aut, cre], Jean-François Peyron[aut,ths]
Description: Automatically displays graphical visualization for exported data table from Connectivity Map (CMap) (2006) <doi:10.1126/science.1132939>.
It allows the representation of the statistics (p-value and enrichment) according to each cell lines in the form of a bubble plot.
Imports: readxl, ggplot2, dplyr, scales, reshape2, stringr