Description: Evaluates the Owen Q-function for an integer value of the degrees of freedom, by applying Owen's algorithm (1965) <doi:10.1093/biomet/52.3-4.437>.
It is useful for the calculation of the power of equivalence tests.
LinkingTo: Rcpp, BH, RcppNumerical, RcppEigen
Suggests: testthat, knitr, rmarkdown, mvtnorm

Title: Processing of Oxy-Bisulfite Microarray Data
Author: E. Andres Houseman, Sc.D. and Kevin C. Johnson
Maintainer: E. Andres Houseman <andres.houseman@oregonstate.edu>
Provides utilities for processing of Oxy-Bisulfite microarray data
(e.g. via the Illumina Infinium platform) with tandem arrays, one using conventional
bisulfite sequencing, the other using oxy-bisulfite sequencing.

Maintainer: E. Andres Houseman <eahouseman@gmail.com>
(e.g. via the Illumina Infinium platform, <http://www.illumina.com>)
with tandem arrays, one using conventional
bisulfite conversion, the other using oxy-bisulfite conversion.

Title: Posterior Predictive Checks of Coalescent Models
Suggests: genealogicalSorting (>= 0.92), phybase (>= 1.3.1), Rmpi (>=
Description: P2C2M is an R package to conduct posterior predictive checks of coalescent models using gene and species trees generated by BEAST and *BEAST, respectively. The functionality of P2C2M can be extended via two third-party R packages that are available from the author websites only: genealogicalSorting (http://www.genealogicalsorting.org) and phybase (http://odyssey.bioinformatics.uga.edu/~lliu/phybase/). To use these optional packages, installation of the Python libraries NumPy (>= 1.9.0) and DendroPy (= 3.12.0) is necessary.

Description: P2C2M is an R package to conduct posterior predictive checks of coalescent models using gene and species trees generated by BEAST or *BEAST. The functionality of P2C2M can be extended via two third-party R packages that are available from the author websites only: genealogicalSorting (http://www.genealogicalsorting.org) and phybase (http://odyssey.bioinformatics.uga.edu/~lliu/phybase/). To use these optional packages, the installation of the Python libraries NumPy (>= 1.9.0) and DendroPy (= 3.12.0) is required.
SystemRequirements: gcc (>= 4.9), Python (= 2.7)