Title: Estimate Percentiles from an Ordered Categorical Variable
Description: An implementation of two functions that estimate values for percentiles from an ordered categorical variable as described by Reardon (2011, isbn:978-0-87154-372-1). One function estimates percentile differences from two percentiles while the other returns the values for every percentile from 1 to 100.
Imports: magrittr, dplyr, purrr, stats, tibble, broom, tidyr, multcomp,
haven, tidyverse, ggplot2, devtools, MASS
Packaged: 2017-09-14 17:40:11 UTC; cimentadaj

Imports: magrittr, dplyr, purrr, stats, tibble, broom, tidyr, multcomp
Suggests: spelling, knitr, rmarkdown, testthat, ggplot2, haven, MASS
Packaged: 2018-03-30 12:44:53 UTC; cimentadaj

Packaged: 2018-07-18 17:13:10 UTC; cimentadaj

Suggests: spelling, knitr, rmarkdown, testthat, ggplot2, MASS, carData
Packaged: 2018-08-24 15:50:07 UTC; cimentadaj

Authors@R: person("Jorge", "Cimentada", email = "cimentadaj@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-5594-1156"))
Suggests: magrittr, spelling, dplyr, knitr, rmarkdown, testthat,
ggplot2, MASS, carData, tidyr (>= 1.0.0), covr
Author: Jorge Cimentada [aut, cre] (<https://orcid.org/0000-0001-5594-1156>)

Author: J. Peter Marquardt <peter@kmarquardt.de> [aut, cre]
Description: Calculate (stratified) percentiles on a data.frame
Stratification will split the data.frame into subgroups and calculate percentiles for each independently.

Imports: dplyr, assertive.types, assertthat, R6

Title: Reconstruct Perfect Phylogenies from DNA Sequence Data
Author: Charith Karunarathna and Jinko Graham
Description: Reconstructs perfect phylogeny at a user-given focal point and to depict and test association in a genomic region based on the reconstructed partitions. Charith B Karunarathna and Jinko Graham (2019) <bioarXiv:10.1101/674523>.
Imports: ape, HHG , dendextend, phytools, Rcpp (>= 0.12.16)

Description: Reconstructs perfect phylogeny at a user-given focal point and to depict and test association in a genomic region based on the reconstructed partitions. Charith B Karunarathna and Jinko Graham (2019) <bioRxiv:10.1101/674523>.
Imports: ape, phytools, Rcpp (>= 0.12.16)