SNP and silicodart data, for reporting on and filtering on various criteria
stringr, ape, vegan, SNPRelate, StAMPP, dismo, DBI, qvalue,
Suggests: knitr, rmarkdown, mmod, PopGenReport

Title: Importing and Analysing SNP and Silicodart Data Generated by
person("Lindsay V.", "Clark", email="lvclark@illinois.edu", rol="ctb"),
SNP (single nucleotide polymorphism) and silicodart (presence/absence) data. The main focus is on data generated
Advanced filtering is based on Linkage Disequilibrium and HWE (Hardy-Weinberg equilibrium). Other functions
are available for visualization after PCoA (Principle Coordinate Analysis), or to facilitate transfer of data
between genlight/genind objects and newhybrids, related, phylip, structure, faststructure packages.

Imports: plyr, tidyr, reshape2, MASS, ggplot2, directlabels, pca3d,
utils, seqinr, pegas, SNPassoc, methods, doParallel, stats,
data.table, parallel, foreach, stringr, ape, vegan, SNPRelate,
StAMPP, dismo, qvalue, sp, rgdal, igraph, rrBLUP, leaflet,

Imports: plyr, tidyr, reshape2, MASS, ggplot2, directlabels, rgl,
pca3d, utils, seqinr, pegas, SNPassoc, methods, doParallel,
stats, data.table, parallel, foreach, stringr, ape, vegan,
SNPRelate, StAMPP, dismo, qvalue, plotly, sp, rgdal, igraph,
rrBLUP, leaflet, mmod, PopGenReport, gdistance, hierfstat

person("Oliver", "Berry", email="oliver.berry@csiro.au", rol="ctb" ),
Depends: R (>= 3.5), adegenet (>= 2.0.0), ggplot2
Imports: stats, methods, utils, plyr, tidyr, MASS, stringr, ape, vegan,
SNPRelate, StAMPP, sp, mmod, PopGenReport, hierfstat, raster,
Suggests: knitr, rmarkdown, rgl, parallel, doParallel, data.table,
reshape2, pca3d, dismo, pegas, directlabels, plotly, rgdal,
leaflet.minicharts, leaflet, rrBLUP, poppr, Rcpp, igraph,
qvalue, gdistance, seqinr, pheatmap, RColorBrewer

person("Jose L.", "Mijangos", email="bernd.gruber@canberra.edu.au", role=c("aut")),
SNPRelate, StAMPP, sp, PopGenReport, hierfstat, raster,
robustbase, gridExtra, HardyWeinberg, foreach, dplyr
reshape2, pca3d, dismo, pegas, directlabels, rgdal,
qvalue, gdistance, seqinr, pheatmap, RColorBrewer, gplots,