Package: diversitree
Version: 0.9-11
Title: Comparative 'Phylogenetic' Analyses of Diversification
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with 'GeoSSE' and
'ClaSSE' by Emma E. Goldberg <eeg@uic.edu>, and 'BiSSE-ness' by Karen
Magnuson-Ford.
Maintainer: Richard G. FitzJohn <rich.fitzjohn@gmail.com>
Depends: R (>= 2.10), methods, ape
Imports: deSolve (>= 1.7), graphics, grDevices, stats, subplex, Rcpp
(>= 0.10.0)
Suggests: numDeriv, minqa, lubridate, expm, caper, geiger
LinkingTo: Rcpp
RcppModules: diversitree
SystemRequirements: fftw3 (>= 3.1.2), gsl (>= 1.15)
Description: Contains a number of comparative 'phylogenetic' methods,
mostly focusing on analysing diversification and character
evolution.  Contains implementations of 'BiSSE' (Binary State
'Speciation' and Extinction) and its unresolved tree extensions,
'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE',
'GeoSSE', and 'BiSSE-ness' Other included methods include Markov
models of discrete and continuous trait evolution and constant rate
'speciation' and extinction.
License: GPL (>= 2)
URL: http://www.zoology.ubc.ca/prog/diversitree
NeedsCompilation: yes
Packaged: 2019-03-12 08:11:51 UTC; rich
Repository: CRAN
Date/Publication: 2019-03-14 13:50:17 UTC

Authors@R: c(person("Richard G.", "FitzJohn", role = c("aut", "cre"),
person("Emma", "Goldberg", role = "aut"),
person("Karen", "Magnuson-Ford", role = "aut"),

Package: diversitree
Title: diversitree: comparative phylogenetic analyses of
diversification
Version: 0.9-3
Date: 2012-05-07
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with GeoSSE and
ClaSSE by Emma E. Goldberg <eeg@uic.edu>, and BiSSE-ness by
Karen Magnuson-Ford.
Maintainer: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>
Depends: R (>= 2.10), deSolve (>= 1.7), ape, subplex
Suggests: numDeriv, tgp, multicore, minqa
SystemRequirements: fftw3 (>= 3.1.2)
Description: Contains a number of comparative phylogenetic methods,
mostly focussing on analysing diversification and character
evolution.  Contains implementations of BiSSE (Binary State
Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
56: 701) and its unresolved tree extensions (FitzJohn et al.
2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
and Extinction), QuaSSE (Quantitative State Speciation and
Extinction; FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE
(Geographic State Speciation and Extinction; Goldberg et al.
2011: Syst. Biol. 60: 451), and BiSSE-ness (Magnuson-Ford and
Otto 2012: Am. Nat.)  Other included methods include Markov
models of discrete and continuous trait evolution and constant
rate speciation and extinction.
License: GPL (>= 2)
URL: http://www.zoology.ubc.ca/prog/diversitree
Packaged: 2012-05-07 21:02:40 UTC; rich
Repository: CRAN
Date/Publication: 2012-05-08 04:06:51