processed. Dataset include: distance from coast, distance from

Title: An Implementation of Flower Pollination Algorithm in R
Author: Amanda Pratama Putra with contributions from Margaretha Ari Anggorowati
Maintainer: Amanda Pratama Putra <12.7012@stis.ac.id>
Description: A nature-inspired metaheuristics algorithm based on the pollination
process of flowers. This R package makes it easy to implement the standard
flower pollination algorithm for every user. The algorithm was first developed

Title: Network Analysis of Metabolic Pathways and Gene Based Assemblies
Description: Functions for path based queries against 'Omics' <https://github.com/etheleon/omics-neo4j-container>, a 'NEO4J' <https://neo4j.com/> database populated with data from metagenomic surveys and their accompanying metabolic and taxonomic annotations.
Imports: IRanges, ShortRead, future, GenomicRanges, forcats, ggplot2,
purrr, gridExtra, lubridate, zoo, magrittr, stats, utils,
grDevices, parallel, RJSONIO, RCurl, igraph, rgexf, dplyr (>=
0.3.0.1), Matrix (>= 1.2-12), stringr, tidyr, shiny, base64enc,
cluster, DBI, RSQLite, data.table, httr,

Title: Meta-analysis for Classification Data and Correction to
Depends: R (>= 2.15.0), lme4, mpt, Matrix
Description: This package allows doing meta-analysis for primary studies with classification outcomes in order to evaluate systematically the accuracies of classifiers, namely, the diagnostic tests. It provides functions to fit the bivariate model of Reitsma et al.(2005). Moreover, if the reference employed in the classification process isn't a gold standard, its deficit can be detected and its influence to the underestimation of the diagnostic test's accuracy can be corrected, as described in Botella et al.(2013).

Package: Meth27QC
Type: Package
Title: Meth27QC: sample quality analysis, and sample control analysis
Version: 1.1
Date: 2010-12-25
Author: Ling Teng, Chao Chen, Chunyu Liu
Maintainer: Ling Teng <tenglingling@gmail.com>
Description: Meth27QC is a tool for analyzing Illumina Infinium
HumanMethylation27 BeadChip Data and generating QC reports.
This package allows users quickly assess data quality of the
Assay. Users can evaluate the data quality in the way that
Illumina GenomeStudio/BeadStudio recommended based on the
control probes. The package reads files exported from
GenomeStudio/BeadStudio software, generating intensity and
standard deviation plots grouped by the types of the control
probes. Meth27 carries 40 control probes for staining,
hybridization, target removal, extension, bisulfite conversion,
specificity, negative and non-polymorphic controls. Details of
those control probes can be found in the Infinium Assay for
Methylation Protocol Guide from Illumina.We also used the other
non-control probes to plot intensity of detected genes, signal
average for green and red. Outliers can be identified.
Depends: gplots,tcltk
License: GPL-2
Packaged: 2011-02-16 19:10:39 UTC; happyfamily
Repository: CRAN
Date/Publication: 2011-02-18 07:26:56