Author: Nicolas Servant, Eleonore Gravier, Pierre Gestraud, Cecile Laurent, Caroline Paccard, Anne Biton, Jonas Mandel, Bernard Asselain, Emmanuel Barillot, Philippe Hupe
Description: We propose both a clear analysis strategy and a selection of tools to investigate microarray gene expression data. The most usual and relevant existing R functions were discussed, validated and gathered in an easy-to-use R package (EMA) devoted to gene expression microarray analysis. These functions were improved for ease of use, enhanced visualisation and better interpretation of results.

Imports: siggenes, affy, multtest, survival, xtable, gcrma,
heatmap.plus, biomaRt, GSA, MASS, FactoMineR, cluster
Suggests: hgu133plus2.db, lumi, vsn, GOstats, GO.db

heatmap.plus, biomaRt, GSA, MASS, FactoMineR, cluster,

Suggests: hgu133plus2.db, lumi, GOstats, Category, vsn,GO.db,

Title: Epigenome-Wide Mediation Analysis Study
Imports: mediation, parallel, minfi, qqman
Description: DNA methylation is essential for human, and environment can change the DNA methylation
and affect body status. Epigenome-Wide Mediation Analysis Study (EMAS) can find
potential mediator CpG sites between exposure (x) and outcome (y) in epigenome-wide.
For more information on the methods we used, please see the following references:

Imports: mediation, parallel, multilevel, minfi, ggplot2, qqman

Imports: mediation, parallel, multilevel, minfi, ggplot2, qqman, lavaan

Imports: mediation, parallel, multilevel, minfi, ggplot2, qqman,

Title: Data Management Tools for Real-Time Monitoring/Ecological
Authors@R: person("Evan", "Kleiman", email = "ekleiman@fas.harvard.edu",
Description: Do data management functions common in real-time monitoring (also called: ecological momentary assessment, experience sampling, micro-longitudinal) data, including centering on participant means and merging event-level data into momentary data sets where you need
the events to correspond to the nearest data point in the momentary data. This is VERY early release software, and more features will be added over time.