Imports: GenomeInfoDb, GenomicRanges, IRanges, Matrix, Rsamtools,
S4Vectors, Seurat, data.table, dplyr, future, future.apply,
ggplot2, ggseqlogo, irlba, pbapply, tidyr, zoo, patchwork,
gggenes, grid, stats, utils, BiocGenerics

person(given = 'Avi', family = 'Srivastava', email = 'asrivastava@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-9798-2079')),
S4Vectors, Seurat (>= 3.2.0), data.table, dplyr, future,
future.apply, ggplot2, ggseqlogo, irlba, pbapply, tidyr,
patchwork, grid, stats, utils, Biobase, BiocGenerics,
Biostrings, ggrepel, stringi, ggbio, biovizBase,
AnnotationFilter, fastmatch, lsa, RcppRoll, scales, Rcpp,
Collate: 'RcppExports.R' 'data.R' 'generics.R' 'dimension_reduction.R'
TFBSTools, motifmatchr, BSgenome, shiny, miniUI

S4Vectors, Seurat (>= 3.2.0), data.table, dplyr (>= 1.0.0),
future, future.apply, ggplot2, ggseqlogo, irlba, pbapply,
tidyr, patchwork, stats, utils, BiocGenerics, Biostrings,
ggrepel, stringi, ggbio, biovizBase, AnnotationFilter,
fastmatch, lsa, RcppRoll, scales, Rcpp, ggforce

S4Vectors, Seurat (>= 3.2.0), SeuratObject, data.table, dplyr
(>= 1.0.0), future, future.apply, ggplot2, ggseqlogo, irlba,
pbapply, tidyr, patchwork, stats, utils, BiocGenerics,

S4Vectors, Seurat (>= 4.0.0), SeuratObject (>= 4.0.0),
data.table, dplyr (>= 1.0.0), future, future.apply, ggplot2,
ggseqlogo, irlba, pbapply, tidyr, patchwork, stats, utils,
BiocGenerics, ggrepel, stringi, fastmatch, lsa, RcppRoll,
TFBSTools, motifmatchr, BSgenome, shiny, miniUI, rtracklayer,

'iranges-methods.R' 'links.R' 'mito.R' 'motifs.R' 'objects.R'

S4Vectors, Seurat (>= 4.0.6), SeuratObject (>= 4.0.0),
scales, Rcpp, ggforce, qlcMatrix, grid, tidyselect
'heatmaps.R' 'iranges-methods.R' 'links.R' 'mito.R' 'motifs.R'

Imports: GenomeInfoDb (>= 1.29.3), GenomicRanges, IRanges, Matrix,
Rsamtools, S4Vectors, SeuratObject (>= 4.0.0), data.table,
dplyr (>= 1.0.0), future, future.apply, ggplot2, irlba,
pbapply, tidyr, patchwork, stats, utils, BiocGenerics, stringi,
fastmatch, RcppRoll, scales, Rcpp, grid, tidyselect, vctrs
Suggests: Seurat (>= 4.0.6), ggforce, ggrepel, ggseqlogo, testthat (>=
2.1.0), chromVAR, SummarizedExperiment, TFBSTools, motifmatchr,
BSgenome, shiny, miniUI, rtracklayer, biovizBase, Biostrings,