Package: CNVassoc
Type: Package
Title: Association analysis of CNV data
Version: 1.5
Date: 2012-11-07
Depends: R (>= 2.15.0), mixdist, mclust, survival
Suggests: CGHcall, CGHregions, snow, CNVtools, xtable, MASS
Author: Juan R Gonz�lez, Isaac Subirana
Maintainer: Juan R Gonz�lez <jrgonzalez@creal.cat>
Description: This package carries out association analysis of common
copy number variants in population-based studies. This package
includes functions for analysing association under a series of
study designs (case-control, cohort, etc), using several
dependent variables (class status, censored data, counts) as
response, adjusting for covariates and considering various
inheritance models. It also includes functions for inferring
copy number (CNV genotype calling).  Various classes and
methods for generic functions (print, summary, plot, anova, ...
) have been created to facilitate the analysis.
License: GPL (>= 2)
LazyLoad: yes
URL: http://www.creal.cat/jrgonzalez/software.htm
Encoding: latin1
BuildVignettes: False
Packaged: 2012-11-07 12:36:07 UTC; isubirana
Repository: CRAN
Date/Publication: 2012-11-07 14:20:04

Depends: R (>= 2.15.0), CNVassocData, mixdist, mclust, survival
Suggests: CGHcall, CGHregions, CNVtools, xtable, MASS
Packaged: 2013-09-18 13:54:04 UTC; isubirana

Package: CNVassoc
Type: Package
Title: Association Analysis of CNV Data and Imputed SNPs
Version: 2.1
Date: 2015-02-26
Depends: R (>= 2.15.0), CNVassocData, mixdist, mclust, survival
Suggests: CGHcall, CGHregions, CNVtools, xtable, MASS, Biobase, CGHbase
Author: Juan R Gonz�lez, Isaac Subirana
Maintainer: Isaac Subirana <isubirana@imim.es>
Description: The CNVassoc package carries out analysis of common
Copy Number Variants (CNVs) and imputed Single Nucleotide
Polymorphisms (SNPs) in population-based studies.
It includes tools for estimating association under a series
of study designs (case-control, cohort, etc), using several
dependent variables (class status, censored data, counts)
as response, adjusting for covariates and considering
various inheritance models. Moreover, it is possible to
perform epistasis studies with pairs of CNVs or imputed SNPs.
It has been optimized in order to make feasible the analyses
of Genome Wide Association studies (GWAs) with hundreds of
thousands of genetic variants (CNVs / imputed SNPs). Also,
it incorporates functions for inferring copy number (CNV
genotype calling). Various classes and methods for generic
functions (print, summary, plot, anova, ...) have been
created to facilitate the analysis.
License: GPL (>= 2)
LazyLoad: yes
URL: http://www.creal.cat/jrgonzalez/software.htm
Encoding: latin1
BuildVignettes: True
Packaged: 2015-02-26 15:19:12 UTC; isubirana
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-26 17:59:26