Package: polysat
Version: 1.0
Date: 2010-09-30
Title: Tools for Polyploid Microsatellite Analysis
Author: Lindsay V. Clark <lvclark@ucdavis.edu>
Maintainer: Lindsay V. Clark <lvclark@ucdavis.edu>
Depends: combinat, methods
Suggests: ade4, adegenet
Description: polysat is a collection of tools to handle microsatellite
data of any ploidy (and samples of mixed ploidy) where allele
copy number is not known in partially heterozygous genotypes.
It can import and export data in ABI GeneMapper, Structure,
ATetra, Tetrasat/Tetra, GenoDive, SPAGeDi, and binary
presence/absence formats.  It can calculate pairwise distances
between individuals using a stepwise mutation model or infinite
alleles model. It can assist the user in estimating the ploidy
of samples, and lastly it can estimate allele frequencies in
populations and calculate pairwise Fst values based on those
frequencies.
License: GPL (>= 2)
URL: http://openwetware.org/wiki/Polysat
Packaged: 2010-10-01 02:43:37 UTC; lvclark
Repository: CRAN
Date/Publication: 2010-10-01 08:23:05

Package: polysat
Version: 1.1-0
Date: 2010-12-6
Title: Tools for Polyploid Microsatellite Analysis
Author: Lindsay V. Clark <lvclark@ucdavis.edu>
Maintainer: Lindsay V. Clark <lvclark@ucdavis.edu>
Depends: combinat, methods
Suggests: ade4, adegenet
Description: polysat is a collection of tools to handle microsatellite
data of any ploidy (and samples of mixed ploidy) where allele
copy number is not known in partially heterozygous genotypes.
It can import and export data in ABI GeneMapper, Structure,
ATetra, Tetrasat/Tetra, GenoDive, SPAGeDi, POPDIST, and binary
presence/absence formats.  It can calculate pairwise distances
between individuals using a stepwise mutation model or infinite
alleles model. It can assist the user in estimating the ploidy
of samples, and lastly it can estimate allele frequencies in
populations, calculate pairwise Fst values based on those
frequencies, and export allele frequencies to SPAGeDi and
adegenet.
License: GPL (>= 2)
URL: http://openwetware.org/wiki/Polysat
Packaged: 2010-12-07 02:03:56 UTC; lvclark
Repository: CRAN
Date/Publication: 2010-12-07 08:20:57