Packaged: 2019-05-29 21:21:38 UTC; jaroslav.kuchar

Description: rCMA allows access to the Java version

Author: Wolfgang Konen <wolfgang.konen@fh-koeln.de>, Nikolaus Hansen <hansen .AT. lri.fr>
Description: Tool for providing access to the Java version 'CMAEvolutionStrategy' of
Nikolaus Hansen. 'CMA-ES' is the Covariance Matrix Adaptation Evolution Strategy,

Title: Detect Copy Number Variants from SNPs Data
Authors@R: c(person(given="Piyal",family="Karunarathne", email="piyalkarumail@yahoo.com", role = c("aut", "cre"),comment = c(ORCID = "0000-0002-1934-145X")),person(given="Pascal", family="Milesi", role = "aut",comment = c(ORCID = "0000-0001-8580-4291")),person(given="Qiujie",family="Zhou", email="qiujie.zhou@ebc.uu.se", role = c("aut"),comment = c(ORCID = "0000-0001-7351-2371")))
Description: Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).
Imports: data.table, graphics, colorspace, R.utils, qgraph
Packaged: 2022-04-05 12:29:21 UTC; piyalkarunarathne

Authors@R: c(person(given="Piyal",family="Karunarathne", email="piyalkarumail@yahoo.com", role = c("aut", "cre"),comment = c(ORCID = "0000-0002-1934-145X")),person(given="Qiujie",family="Zhou", email="qiujie.zhou@ebc.uu.se", role = c("aut"),comment = c(ORCID = "0000-0001-7351-2371")),person("Klaus", "Schliep", email="klaus.schliep@gmail.com", role = c("aut"), comment = c(ORCID = "0000-0003-2941-0161")),person(given="Pascal", family="Milesi", role = "aut",comment = c(ORCID = "0000-0001-8580-4291")))
Imports: data.table, graphics, colorspace, R.utils, qgraph, stringr
Packaged: 2022-10-26 15:49:06 UTC; piyalkarunarathne

Title: Regularized Continual Reassessment Method
Author: Xiang Li, Hong Tian, Kevin Liu, Pilar Lim
Description: Fit a 2-parameter continual reassessment method (CRM) model (O'Quigley and Shen (1996), <doi: 10.2307/2532905>) regularized with L2 norm (Friedman et al. (2010), <doi: 10.18637/jss.v033.i01>) adjusted by the distance with the target dose limiting toxicity (DLT) rate.