Package: diversitree
Title: diversitree: comparative phylogenetic analyses of
diversification
Version: 0.9-5
Date: 2013-06-13
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with GeoSSE and
ClaSSE by Emma E. Goldberg <eeg@uic.edu>, and BiSSE-ness by
Karen Magnuson-Ford.
Maintainer: Richard G. FitzJohn <rich.fitzjohn@gmail.com>
Depends: R (>= 2.10), deSolve (>= 1.7), ape, subplex, methods, Rcpp (>=
0.10.0)
Suggests: numDeriv, minqa, lubridate
LinkingTo: Rcpp
RcppModules: diversitree
SystemRequirements: fftw3 (>= 3.1.2), gsl (>= 1.12)
Description: Contains a number of comparative phylogenetic methods,
mostly focusing on analysing diversification and character
evolution.  Contains implementations of BiSSE (Binary State
Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
56: 701) and its unresolved tree extensions (FitzJohn et al.
2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
and Extinction), QuaSSE (Quantitative State Speciation and
Extinction; FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE
(Geographic State Speciation and Extinction; Goldberg et al.
2011: Syst. Biol. 60: 451), and BiSSE-ness (Magnuson-Ford and
Otto 2012: Am. Nat.)  Other included methods include Markov
models of discrete and continuous trait evolution and constant
rate speciation and extinction.
License: GPL (>= 2)
URL: http://www.zoology.ubc.ca/prog/diversitree
Packaged: 2013-06-13 08:05:23 UTC; rich
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-06-13 11:00:10

Package: diversitree
Title: diversitree: comparative phylogenetic analyses of
diversification
Version: 0.9-6
Date: 2013-06-13
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with GeoSSE and
ClaSSE by Emma E. Goldberg <eeg@uic.edu>, and BiSSE-ness by
Karen Magnuson-Ford.
Maintainer: Richard G. FitzJohn <rich.fitzjohn@gmail.com>
Depends: R (>= 2.10), deSolve (>= 1.7), ape, subplex, methods, Rcpp (>=
0.10.0)
Suggests: numDeriv, minqa, lubridate
LinkingTo: Rcpp
RcppModules: diversitree
SystemRequirements: fftw3 (>= 3.1.2), gsl (>= 1.12)
Description: Contains a number of comparative phylogenetic methods,
mostly focusing on analysing diversification and character
evolution.  Contains implementations of BiSSE (Binary State
Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
56: 701) and its unresolved tree extensions (FitzJohn et al.
2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
and Extinction), QuaSSE (Quantitative State Speciation and
Extinction; FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE
(Geographic State Speciation and Extinction; Goldberg et al.
2011: Syst. Biol. 60: 451), and BiSSE-ness (Magnuson-Ford and
Otto 2012: Am. Nat.)  Other included methods include Markov
models of discrete and continuous trait evolution and constant
rate speciation and extinction.
License: GPL (>= 2)
URL: http://www.zoology.ubc.ca/prog/diversitree
Packaged: 2013-06-13 12:02:16 UTC; rich
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-06-13 16:15:54