Package: haplo.score
Version: 1.0.2
Date: 2002-09-13
Title: Score Tests for Association of Traits with Haplotypes when
Linkage Phase is Ambiguous.
Author: Charles M. Rowland, David E. Tines, and Daniel J. Schaid
<schaid@mayo.edu>.  R version translation by Gregory R. Warnes
<gregory_r_warnes@groton.pfizer.com>
Maintainer: Gregory R. Warnes <gregory_r_warnes@groton.pfizer.com>
Description: A suite of routines that can be used to compute score
statistics to test associations between haplotypes and a wide
variety of traits, including binary, ordinal, quantitative, and
Poisson. These methods assume that all subjects are unrelated and
that haplotypes are ambiguous (due to unknown linkage phase of the
genetic markers). The methods provide several different global and
haplotype-specific tests for association, as well as provide
adjustment for non-genetic covariates and computation of simulation
p-values (which may be needed for sparse data). Details on the
background and theory of the score statistics can be found in the
following reference:
.
Schaid DJ, Rowland CM, Tines DE, Jacobson RM, Poland GA.
Score tests for association of traits with haplotypes when
linkage phase is ambiguous. American J Human Genetics, February,
2002.
License: Copyright 2001 Mayo Foundation for Medical Education
and Research.
.
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version 2
of the License, or (at your option) any later version.
.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.
.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
02111-1307, USA.
.
URL:  http://www.mayo.edu/statgen/

Package: haplo.stats
Version: 1.1.0
Date: 2004-03
Title: Statistical Analysis of Haplotypes with Traits and
Covariates when Linkage Phase is Ambiguous.
Author: Jason P. Sinnwell and Daniel J. Schaid
Maintainer: Jason P. Sinnwell <sinnwell@mayo.edu>
Description: Haplo Stats is a suite of S-PLUS/R routines for the
analysis of indirectly measured haplotypes. The statistical methods
assume that all subjects are unrelated and that haplotypes are
ambiguous (due to unknown linkage phase of the genetic markers).
The genetic markers are assumed to be codominant (i.e., one-to-one
correspondence between their genotypes and their phenotypes), and so
we refer to the measurements of genetic markers as genotypes. The main
functions in Haplo Stats are:  haplo.em, haplo.glm and haplo.score
License: Copyright 2003 Mayo Foundation for Medical Education and Research.
This program is free software; you can redistribute it and/or modify it under the terms of
the GNU General Public License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
more details.
You should have received a copy of the GNU General Public License along with this
program; if not, write to the Free Software Foundation, Inc.,
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
For other licensing arrangements, please contact Daniel J. Schaid.
Daniel J. Schaid, Ph.D.
Division of Biostatistics
Harwick Building  Room 775
Mayo Clinic
200 First St., SW
Rochester, MN 55905
phone: 507-284-0639
fax:   507-284-9542
email: schaid@mayo.edu
Depends: R (>= 1.7.1)
URL: http://www.mayo.edu/hsr/people/schaid.html
Packaged: Fri Mar 19 08:24:21 2004; hornik