(haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach
JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a
common class to account for sparse cells in tables as described by Hollenbach JA,
Packaged: 2016-02-29 06:34:55 UTC; Pappas Family

Packaged: 2016-04-09 08:12:23 UTC; Pappas Family

Packaged: 2016-08-27 19:46:47 UTC; Pappas Family

Packaged: 2016-08-30 04:12:47 UTC; Pappas Family

Imports: XML, httr, haplo.stats, parallel, knitr, rmarkdown
Packaged: 2018-02-08 21:56:48 UTC; PappasDesktop

Author: Derek Pappas <pappas.derek@gmail.com>, Steve Mack <steven.mack@ucsf.edu>, Jill
Imports: XML, httr, haplo.stats, parallel, knitr

Author: Derek Pappas <djpappas75@gmail.com>, Steve Mack <Steven.Mack@ucsf.edu>, Jill
Imports: XML, httr, haplo.stats, parallel

Author: Derek Pappas <djpappas75@gmail.com>, Steve Mack <Steven.Mack@ucsf.edu>, Jill Hollenbach <Jill.Hollenbach@ucsf.edu>

Title: Biochemically Intuitive Generalized Loewe Model
Author: Heather Turner, Annelies Tourny, Olivier Thas, Maxim Nazarov, Rytis Bagdziunas
Description: Response surface methods for drug synergy analysis. Available
methods include generalized and classical Loewe formulations as well as Highest
Single Agent methodology. Response surfaces can be plotted in an interactive
3-D plot and formal statistical tests for presence of synergistic effects are
Imports: ggplot2, MASS, methods, minpack.lm, numDeriv, parallel,
Packaged: 2017-06-30 06:33:45 UTC; rbagdziunas

available. Implemented methods and tests are described in the article
"BIGL: Biochemically Intuitive Generalized Loewe null model for prediction
of the expected combined effect compatible with partial agonism and antagonism"
by Koen Van der Borght, Annelies Tourny, Rytis Bagdziunas, Olivier Thas,
Maxim Nazarov, Heather Turner, Bie Verbist & Hugo Ceulemans (2017)
Suggests: knitr, rmarkdown, testthat, shiny, DT

Author: Heather Turner, Annelies Tourny, Olivier Thas, Maxim Nazarov, Rytis Bagdziunas, Stijn Hawinkel
progress, rgl, robustbase, scales, nleqslv,