Depends: R (>= 3.0.0), Rcpp, plyr, lme4, doParallel
Packaged: 2014-09-07 15:02:23 UTC; Chaitanya

Title: Joint Analysis of Genotype and Group-Specific Variability Using
Description: Implements a novel score test that measures 1) the overall shift in the gene expression due to genotype (additive genetic effect), and 2) group-specific changes in gene expression due to genotype (interaction effect) in a mixed-effects model framework.
Packaged: 2015-03-02 18:24:30 UTC; Chaitanya

a Novel Score Test Approach to Map Expression Quantitative
Depends: R (>= 3.0.0), Rcpp, plyr, lme4, reshape2

Packaged: 2016-07-11 21:03:56 UTC; Chaitanya

Title: R modules for JASPAR databases: a collection of transcription
factor DNA-binding preferences, modeled as matrices.
Description: R modules for JASPAR data processing and visualization
Collate: 'zzz.R' 'hello.R' 'JASPAR-package.R' 'JASPAR-internal.R'

Title: A Metadata and Text Extraction and Manipulation Tool Set
Authors@R: c(person("Ingmar", "Böschen", email = "ingmar.boeschen@uni-hamburg.de", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-1159-3991")))
Description: Provides a function collection to extract metadata, sectioned text and study characteristics from scientific articles in 'NISO-JATS' format. Articles in PDF format can be converted to 'NISO-JATS' with the 'Content ExtRactor and MINEr' ('CERMINE', <https://github.com/CeON/CERMINE>). For convenience, two functions bundle the extraction heuristics: JATSdecoder() converts 'NISO-JATS'-tagged XML files to a structured list with elements title, author, journal, history, 'DOI', abstract, sectioned text and reference list. study.character() extracts multiple study characteristics like number of included studies, statistical methods used, alpha error, power, statistical results, correction method for multiple testing, software used. An estimation of the involved sample size is performed based on reports within the abstract and the reported degrees of freedom within statistical results. In addition, the package contains some useful functions to process text (text2sentences(), text2num(), ngram(), strsplit2(), grep2()). See Böschen, I. (2021) <doi:10.1007/s11192-021-04162-z> and Böschen, I. (2021) <doi:10.1038/s41598-021-98782-3>.
Author: Ingmar Böschen [aut, cre] (<https://orcid.org/0000-0003-1159-3991>)