Packaged: 2018-11-20 09:11:50 UTC; mebrahimpoor

Description: SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.
Packaged: 2019-10-03 11:15:22 UTC; mebrahimpoor

Packaged: 2019-10-06 19:00:27 UTC; mebrahimpoor

Description: SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to the threshold c", where c is selected by the user. Family-wise error rate control is provided through use of closed testing with Simes test. For more information on closed testing with Simes see Goeman et al. (2019) <doi:10.1093/biomet/asz041> and for more information about the properties and performance of SEA procedure see Ebrahimpoor et al. (2019) <doi:10.1093/bib/bbz074>.
Depends: R (>= 2.10), hommel (>= 1.4), ggplot2
Packaged: 2020-03-23 11:10:31 UTC; mebrahimpoor

Author: Wolfgang Konen <wolfgang.konen@fh-koeln.de>, Martin Zaefferer,
Patrick Koch; Bug hunting and testing by Ayodele Fasika, Ashwin
Description: Slow Feature Analysis in R, ported to R based on the
matlab versions SFA toolkit 1.0 by Pietro Berkes and SFA
toolkit 2.8 by Wolfgang Konen for matlab.
Collate: 'eta.R' 'gauss.R' 'lcov.R' 'nlRegress.R' 'sfa.R'

matlab versions SFA toolkit 1.0 by Pietro Berkes and SFA toolkit

Description: Slow Feature Analysis (SFA), ported to R based on
'matlab' implementations of SFA: 'SFA toolkit' 1.0 by Pietro Berkes and 'SFA toolkit'
Imports: stats, MASS, graphics, grDevices

Title: Simulated Haploid Asexual Population Evolution
Imports: abind, graphics, sn, VGAM, evd, stats, utils, RSQLite, DBI,