Maintainer: Andrew C. Hooker <andrew.hooker@farmaci.uu.se>

Package: PopGenKit
Type: Package
Title: Useful functions for (batch) file conversion and data resampling
in microsatellite datasets
Version: 1.0
Date: 2011-07-21
Author: Sebastien Rioux Paquette
Maintainer: Sebastien Rioux Paquette
<sebastien.riouxpaquette@gmail.com>
Description: There are two main purposes to this package. The first is
to allow batch conversion of Genepop (Rousset 2008) input files
for use with Arlequin (Excoffier and Lischer 2010), which has a
simple GUI to analyze batch files. Two commonly used simulation
software, BottleSim (Kuo & Janzen 2003) and Easypop (Balloux
2001) produce Genepop output files that can be analyzed this
way. There are also functions to convert to and from BottleSim
format, to quickly produce allele frequency tables or to
convert a file directly for use in ordination analyses (e.g.
principal component analysis). This package also includes
functions to calculate allele rarefaction curves, confidence
intervals on heterozygosity and allelic richness with
resampling strategies (bootstrap and jackknife).
License: GPL-2
LazyLoad: yes
Packaged: 2012-10-29 08:57:27 UTC; ripley
Repository: CRAN
Date/Publication: 2012-10-29 08:57:27

Title: PopGen: A simple way to analyse and visualize population genetic
Description: This package provides an easy way to analyse population
Depends: RgoogleMaps, adegenet, ade4, pegas, genetics, gap, lattice,
sp, calibrate, xtable, plyr, DEMEtics, gplots, dismo, mmod
Packaged: 2012-11-28 13:06:27 UTC; yellowgecko

sp, calibrate, xtable, plyr, DEMEtics, gplots, dismo, mmod,

Description: This package provides an easy way to analyse population genetic data
Depends: R (>= 3.0.0), adegenet, mmod, knitr
Imports: lattice, RgoogleMaps, gap, calibrate, xtable, plyr, dismo,
reshape, ggplot2, R.utils, ade4, pegas, genetics, rgdal

reshape, ggplot2, R.utils, ade4, pegas, genetics
Packaged: 2013-08-31 02:28:53 UTC; yellowgecko

reshape, ggplot2, R.utils, ade4, pegas, genetics, rgdal,

Depends: R (>= 3.0.0), knitr, adegenet, raster