Author: Jeffrey D. Allen <Jeffrey.Allen@UTSouthwestern.edu>
Maintainer: Jeffrey D. Allen <Jeffrey.Allen@UTSouthwestern.edu>
Suggests: parmigene (>= 1.0), snow (>= 0.3), space (>= 0.1), WGCNA (>=
Description: Ensemble network aggregation is an approach which
leverages the inverse-rank-product (IRP) method to combine
networks. This package provides the capabilities to use IRP to
bootstrap a dataset using a single method, to aggregate the
networks produced by multiple methods, or to aggregate the
networks produced on different datasets.
Collate: 'bootstrap.R' 'buildAracne.R' 'buildGenenet.R' 'buildSpace.R'

Imports: space (>= 0.1), WGCNA (>= 1.20), parmigene (>= 1.0)
Description: Ensemble network aggregation is an approach which leverages the
inverse-rank-product (IRP) method to combine networks. This package
provides the capabilities to use IRP to bootstrap a dataset using a single
method, to aggregate the networks produced by multiple methods, or to
aggregate the networks produced on different datasets.

Title: Analysis of Niche Evolution using Niche and Distribution Models
Authors@R: c(person(given = "Dan", family = "Warren", role = c("aut", "cre"), email = "dan.l.warren@gmail.com", comment = c(ORCID = "0000-0002-8747-2451")),
person(given = "Nick", family = "Matzke", role = "ctb", email = "nick.matzke@anu.edu.au"),
person(given = "Marcel", family = "Cardillo", role = "ctb", email = "marcel.cardillo@anu.edu.au"),
person(given = "John", family = "Baumgartner", role = "ctb"),
person(given = "Linda", family = "Beaumont", role = "ctb"),
person(given = "Nicholas", family = "Huron", role = "ctb"),
person(given = "Marianna", family = "Simoes", role = "ctb"),
person(given = "Teresa", family = "Iglesias", role = "ctb"),
person(given = "Russell", family = "Dinnage", role = "aut", email = "r.dinnage@gmail.com", comment = c(ORCID = "0000-0003-0846-2819")))
Description: Description: Tools for constructing niche models and analyzing patterns of niche evolution.  Acts as an interface for many popular modeling algorithms, and allows users to conduct Monte Carlo tests to address basic questions in evolutionary ecology and biogeography.  Warren, D.L., R.E. Glor, and M. Turelli (2008) <doi:10.1111/j.1558-5646.2008.00482.x> Glor, R.E., and D.L. Warren (2011) <doi:10.1111/j.1558-5646.2010.01177.x>  Warren, D.L., R.E. Glor, and M. Turelli (2010) <doi:10.1111/j.1600-0587.2009.06142.x> Cardillo, M., and D.L. Warren (2016) <doi:10.1111/geb.12455> D.L. Warren, L.J. Beaumont, R. Dinnage, and J.B. Baumgartner (2019) <doi:10.1111/ecog.03900>.
Imports: rgeos, knitr, ggplot2, gridExtra, lhs, magrittr, ENMeval, sp,
Suggests: testthat, hypervolume, leaflet, mgcv, ecospat, randomForest,
ranger, caret, CalibratR, ape, ResourceSelection, ppmlasso,
fields, reshape2, vip, pdp, fastshap, viridis, progress
Packaged: 2020-08-28 07:18:25 UTC; danwarren
Author: Dan Warren [aut, cre] (<https://orcid.org/0000-0002-8747-2451>),