Imports: clipr, data.table (>= 1.9.8), dplyr, ggplot2, ggpubr,
grDevices, graphics, hydroGOF, ncdf4, parallel, patchwork,
pbapply, purrr, rlang, sf, stats, stringr, tidyr, tidyselect,

Title: Hybrid Methods for Addressing Uncertainty in RISK Assessments
Author: Jeremy Rohmer, Jean-Charles Manceau, Dominique Guyonnet, Faiza Boulahya
Description: Methods for addressing uncertainty in risk assessments using hybrid representations of uncertainty (probability distributions, fuzzy numbers, intervals, probability distributions with imprecise parameters). The uncertainty propagation procedure combines random sampling using Monte Carlo method with fuzzy interval analysis of Baudrit et al. (2007) <doi:10.1109/TFUZZ.2006.876720>. The sensitivity analysis is based on the pinching method of Ferson and Tucker (2006) <doi:10.1016/j.ress.2005.11.052>.

Title: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass
Description: Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by
Mass Spectrometry experiments (HDX-MS). 'HaDeX' introduces a new standardized and reproducible workflow
for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers
data exploration, quality control and generation of publication-quality figures. All functionalities
are also available in the in-built 'Shiny' app.
Imports: data.table, dplyr, DT, ggplot2, gsubfn, latex2exp, reshape2,
Suggests: covr, digest, knitr, pander, rmarkdown, testthat, vdiffr

Suggests: spelling, covr, digest, knitr, pander, rmarkdown,
Author: Weronika Puchala [cre, aut] (<https://orcid.org/0000-0003-2163-1429>),

Suggests: spelling, covr, digest, knitr, pander, renv, rmarkdown,
shinycssloaders, shinyhelper, shinyjs, testthat, vdiffr

Mass Spectrometry experiments (HDX-MS) (10.1093/bioinformatics/btaa587). 'HaDeX' introduces a new
standardized and reproducible workflow for the analysis of the HDX-MS data, including novel
uncertainty intervals. Additionally, it covers data exploration, quality control and generation of
publication-quality figures. All functionalities are also available in the in-built 'Shiny' app.
Suggests: spelling, covr, digest, gridExtra, knitr, pander, renv,
rmarkdown, shinycssloaders, shinyhelper, shinyjs, testthat,