person("Gábor", "Csárdi", , "csardi.gabor@gmail.com", role = c("aut", "cre", "cph"),
person("Mango Solutions", role = c("cph", "fnd"))
Description: It is sometimes useful to perform a computation in a separate
R process, without affecting the current R process at all.  This
Suggests: cli (>= 1.1.0), covr, mockery, ps, rprojroot, spelling,
Config/Needs/website: r-lib/asciicast, glue, htmlwidgets, tibble,
Packaged: 2022-07-13 09:38:30 UTC; gaborcsardi

Config/Needs/website: r-lib/asciicast, glue, htmlwidgets, igraph,
Packaged: 2022-08-22 14:58:27 UTC; gaborcsardi

Suggests: asciicast, cli (>= 1.1.0), covr, mockery, ps, rprojroot,
spelling, testthat (>= 3.0.0), withr (>= 2.3.0)
Packaged: 2022-11-02 15:17:20 UTC; gaborcsardi

Imports: utils, MASS, matrixStats (>= 0.6.2), R.methodsS3 (>= 1.4.2),
Title: CalMaTe - Improved allele-specific copy number of SNP arrays for
Description: A multi-array post-processing method of allele-specific
Author: Maria Ortiz, Ander Aramburu, Henrik Bengtsson, Pierre Neuvial,

Imports: utils, MASS, matrixStats (>= 0.8.5), R.methodsS3 (>= 1.4.4),
Description: A multi-array post-processing method of allele-specific copy-number estimates (ASCNs)
Author: Maria Ortiz, Ander Aramburu, Henrik Bengtsson, Pierre Neuvial, Angel Rubio

Imports: utils, MASS, R.methodsS3 (>= 1.5.2), R.oo (>= 1.15.8),

Imports: utils, MASS, R.methodsS3 (>= 1.7.0), R.oo (>= 1.18.0),
Title: Improved Allele-Specific Copy Number of SNP Microarrays for
Description: A multi-array post-processing method of allele-specific copy-number estimates (ASCNs).

Imports: utils, MASS, R.methodsS3 (>= 1.7.0), R.oo (>= 1.19.0),

Imports: utils, MASS, R.methodsS3 (>= 1.8.1), R.oo (>= 1.24.0),
Description: The CalMaTe method calibrates preprocessed allele-specific copy number estimates (ASCNs) from DNA microarrays by controlling for single-nucleotide polymorphism-specific allelic crosstalk. The resulting ASCNs are on average more accurate, which increases the power of segmentation methods for detecting changes between copy number states in tumor studies including copy neutral loss of heterozygosity. CalMaTe applies to any ASCNs regardless of preprocessing method and microarray technology, e.g. Affymetrix and Illumina.