Title: Rare Variant Analysis and Genetic Simulations
Description: Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test; and genetic simulations.
LinkingTo: Rcpp, RcppParallel, RcppEigen, gaston, BH
Depends: R (>= 3.5.0), Rcpp, RcppParallel, methods, gaston, mlogit (>=

Description: Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>); and genetic simulations.

Description: Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>) in the whole genome; and genetic simulations.
Imports: Formula, dfidx, parallel, bedr, curl

Imports: Formula, dfidx, parallel, bedr, curl, data.table

Description: Genetic simulations and rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>). Ravages also implements a dedicated procedure to perform rare variant association tests in the whole genome (Bocher et al. 2022, <doi:10.1371/journal.pgen.1009923>).

Title: Raven Hydrological Modelling Framework R Support and Analysis
person("Robert", "Chlumsky", email = "rchlumsk@uwaterloo.ca", role = c("cre","aut")),
person("James", "Craig", email = "jrcraig@uwaterloo.ca", role = "ctb"),
person("Genevieve", "Brown", email = "genevieve.wbrown@gmail.com", role = "ctb"),
person("Leland", "Scantlebury", email = "lscantlebury@uwaterloo.ca", role = "ctb"),
person("Sarah", "Grass", email = "sgrass@nhcweb.com", role = "ctb"),
person("Simon", "Lin", email = "simon.lin@uwaterloo.ca", role = "ctb"))
Description: Utilities for processing input and output files associated with the Raven Hydrological Modelling Framework. Includes various plotting functions, model diagnostics, reading output files into xts format, and support for writing Raven input files (rvt, rvh, rvc, etc.).
Note: Package is in active development; please report errors and
Imports: colorspace, cowplot, deldir, dplyr, dygraphs, gdata, ggplot2,
grDevices, graphics, igraph, lubridate, magrittr, methods,
ncdf4, purrr, reshape2, rgdal, rgeos, scales, sf, sp, stats,
Suggests: devtools, magick, knitr, weathercan, tidyhydat