It incorporates two support vector machine models ("precursor" and "mature") trained on publicly available antimicrobial peptide data using calculated
In order to support genome-wide analyses, these models are designed to accept any type of protein as input
and calculation of compositional properties has been optimised for high-throughput use. For details see Fingerhut et al. 2020 <doi:10.1101/2020.05.07.082412>.
Imports: Peptides, caret (>= 6.0.0), kernlab, Rcpp, parallel
Suggests: testthat, knitr, rmarkdown, e1071
Author: Legana Fingerhut [aut, cre] (<https://orcid.org/0000-0002-2482-5336>),

and calculation of compositional properties has been optimised for high-throughput use. For best results it is important to select the model that accurately
represents your sequence type: for full length proteins, it is recommended to use the default "precursor" model. The alternative, "mature", model is best suited
for mature peptide sequences that represent the final antimicrobial peptide sequence after post-translational processing. For details see Fingerhut et al. (2020) <doi:10.1093/bioinformatics/btaa653>.
The 'ampir' package is also available via a Shiny based GUI at <https://ampir.marine-omics.net/>.
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, e1071
Packaged: 2021-06-29 04:35:58 UTC; leganafingerhut

Authors@R: c(person("Johannes","Signer", role = c("aut", "cre"), email = "jsigner@gwdg.de"))
Description: Manage and analyze animal movement data. The functionality of 'amt' includes methods to calculate track statistics (e.g. step lengths, speed, or turning angles), prepare data for fitting habitat selection analyses (resource and step-selection functions), and simulation of space-use from fitted step-selection functions.
Depends: R (>= 2.10), tidyverse, survival
Imports: broom, circular, dplyr (>= 0.7.0), fitdistrplus, FNN,
geosphere, graphics, grDevices, lazyeval, leaflet, lubridate,
maptools, methods, purrr, raster, Rcpp (>= 0.12.7), rgeos,
Suggests: adehabitatLT, bcpa, ctmm, devtools, move, moveHMM, spacetime,