Title: Partition/Decomposition of Additive Genetic Values by Paths of
Description: Additive genetic (breeding) value represents a sum of additive gene effects over whole genome and can be inferred from phenotype values of relatives via pedigree based mixed models. The partitioning method is described in Garcia-Cortes et al. (2008) <DOI:10.1017/S175173110800205X>.
Imports: directlabels (>= 1.1), gdata (>= 2.6.0), ggplot2 (>= 0.8.9),
Suggests: RColorBrewer (>= 1.0-2), truncnorm (>= 1.0-5), knitr,

Title: Partition/Decomposition of Breeding Values by Paths of
Description: A software that implements a method for partitioning genetic trends to
quantify the sources of genetic gain in breeding programmes.
The partitioning method is described in Garcia-Cortes et al.
main function AlphaPart for partitioning breeding values and auxiliary
functions for manipulating data and summarizing, visualizing, and saving

person("Thiago", "de Paula Oliveira", role=c("aut"),
Author: Gregor Gorjanc [aut, cre] (<https://orcid.org/0000-0001-8008-2787>),

pedigree (>= 1.3.1), Rcpp (>= 0.9.4), reshape, dplyr, magrittr

Imports: directlabels (>= 1.1), ggplot2 (>= 0.8.9), pedigree (>=

rmarkdown, testthat (>= 3.0.0), covr, ggridges (>= 0.5.3)

Authors@R: c(person("Chris", "Gaynor", email = "gaynor.robert@hotmail.com",
person("Gregor", "Gorjanc", role = "ctb",
person("David", "Wilson", role = "ctb"),
Description: The successor to the 'AlphaSim' software for breeding program
Used for stochastic simulations of breeding programs to the level of DNA
sequence for every individual. Contained is a wide range of functions for
modeling common tasks in a breeding program, such as selection and crossing.
These functions allow for constructing simulations of highly complex plant and
animal breeding programs via scripting in the R software environment. Such
simulations can be used to evaluate overall breeding program performance and
conduct research into breeding program design, such as implementation of
genomic selection. Included is the 'Markovian Coalescent Simulator' ('MaCS')
for fast simulation of biallelic sequences according to a population
LinkingTo: Rcpp, RcppArmadillo (>= 0.7.500.0.0), BH
Author: Chris Gaynor [aut, cre] (<https://orcid.org/0000-0003-0558-6656>),