progress, igraph, data.table, Rcpp, RANN

progress, igraph, data.table, Rcpp, RANN, jsonlite, png

Description: A toolkit that allows scientists to work with data from single cell sequencing technologies such as scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST). Single (i) Cell R package ('iCellR') provides unprecedented flexibility at every step of the analysis pipeline, including normalization, clustering, dimensionality reduction, imputation, visualization, and so on. Users can design both unsupervised and supervised models to best suit their research. In addition, the toolkit provides 2D and 3D interactive visualizations, differential expression analysis, filters based on cells, genes and clusters, data merging, normalizing for dropouts, data imputation methods, correcting for batch differences, pathway analysis, tools to find marker genes for clusters and conditions, predict cell types and pseudotime analysis. See Khodadadi-Jamayran, et al (2020) <doi:10.1101/2020.05.05.078550>  and Khodadadi-Jamayran, et al (2020) <doi:10.1101/2020.03.31.019109> for more details.

Title: Returns Data from the NIH's 'iCite' API
Authors@R: person("Travis", "Riddle", email = "travis.riddle@nih.gov", role = c("aut", "cre"))
Description: A minimal wrapper around the NIH's 'iCite' API (<https://icite.od.nih.gov/api>).
Given a vector of pubmed IDs, this package returns a dataframe of the information yielded by
the 'iCite' API. The primary metric yielded by 'iCite' is the paper's relative citation ratio,
but the API also returns other meta-data from the paper, including author names, publication
journal, publication year, paper title, doi, and a number of other citation metrics.
Imports: httr (>= 1.4), jsonlite (>= 1.6)

Title: A Minimal Wrapper Around NIH's 'iCite' API
the 'iCite' API. The primary metrics yielded by 'iCite' are measurements of a paper's
scientific influence and translational potential, but the API also returns other meta-data
from the paper, including author names, publication journal, publication year, paper title,
doi, and a number of other citation metrics.