Imports: matrixStats (>= 0.4.3), R.oo (>= 1.8.3)

Description: Analysis of copy-number estimates obtained from various

Suggests: aroma.light (>= 1.22.0), DNAcopy (>= 1.30.0), PSCBS (>=
Description: Methods for analyzing DNA copy-number data.  Specifically,
this package implements the multi-source copy-number normalization (MSCN)
method for normalizing copy-number data obtained on various platforms and
technologies.  It also implements the TumorBoost method for normalizing

Suggests: aroma.light (>= 1.28.0), DNAcopy (>= 1.30.0), GLAD (>=

Suggests: aroma.light (>= 1.32.0), DNAcopy (>= 1.36.0), GLAD (>=
Title: Copy-Number Analysis of Large Microarray Data Sets

SuggestsNote: BioC (>= 3.0), Recommended: aroma.light, DNAcopy

Title: Support package for aroma.affymetrix et al.
Imports: affxparser (>= 1.10.1), geneplotter (>= 1.16.0), RColorBrewer
Description: This package is a private support package for
aroma.affymetrix et al.  The methods and classes of this
package are independent of platform.  It's API is in alpha and

Imports: affxparser (>= 1.10.1), RColorBrewer (>= 1.0-2)
expectile (>= 0.2.3), geneplotter (>= 1.16.0), GLAD (>=
package are independent of platform.  Its API is in alpha and
biocViews: Microarray, OneChannel, TwoChannel, MultiChannel,

Imports: affxparser (>= 1.16.0), RColorBrewer (>= 1.0-2)
expectile (>= 0.2.5), geneplotter (>= 1.16.0), GLAD (>=

Suggests: RColorBrewer (>= 1.0-2), EBImage (>= 2.2.0), Cairo (>=

Title: Core methods and classes used by aroma.* package part of The
Description: This package contains core methods and classes used by
higher-level aroma.* packages part of the Aroma Project, e.g.
aroma.affymetrix and aroma.cn.  Its API should be considered to
be in alpha and beta versions, and is mostly of interest to

Title: Core methods and classes used by aroma.* packages part of The

Imports: utils, R.methodsS3 (>= 1.5.2), R.oo (>= 1.15.8), R.cache (>=
aroma.affymetrix and aroma.cn.  Its API is mostly of interest
to developers and is rarely used by end users directly.

Imports: utils, R.methodsS3 (>= 1.6.1), R.oo (>= 1.18.0), R.cache (>=
preprocessCore (>= 1.20.0), aroma.light (>= 1.28.0), DNAcopy