Authors@R: c(person("Ricardo", "de Matos Simoes", role=c("aut","cre"),
Author: Ricardo de Matos Simoes and Frank Emmert-Streib
Maintainer: Ricardo de Matos Simoes <r.dematossimoes@qub.ac.uk>
Depends: R (>= 2.10.0), minet, c3net, infotheo, igraph, Matrix, lattice
Description: This package implements the BC3NET algorithm for gene
regulatory network inference (de Matos Simoes and Frank
Emmert-Streib, Bagging Statistical Network Inference from
Large-Scale Gene Expression Data, PLoS ONE 7(3): e33624)

Depends: R (>= 2.10.0), c3net, infotheo, igraph, Matrix, lattice

Title: Gene Regulatory Network Inference with Bc3net
Author: Ricardo de Matos Simoes [aut, cre],
Maintainer: Ricardo de Matos Simoes <ricardo_dematossimoes@dfci.harvard.edu>
Description: Implementation of the BC3NET algorithm for gene regulatory network inference (de Matos Simoes and Frank Emmert-Streib, Bagging Statistical Network Inference from Large-Scale Gene Expression Data, PLoS ONE 7(3): e33624).

Depends: R (>= 3.0.0), c3net, infotheo, igraph, Matrix, lattice
Description: Implementation of the BC3NET algorithm for gene regulatory network inference (de Matos Simoes and Frank Emmert-Streib, Bagging Statistical Network Inference from Large-Scale Gene Expression Data, PLoS ONE 7(3): e33624, <doi:10.1371/journal.pone.0033624>).

Title: Bias-Corrected Methods for Estimating the ROC Surface of
Author: Khanh To Duc, with contributions from Monica Chiogna and Gianfranco Adimari
Maintainer: Khanh To Duc <toduc@stat.unipd.it>
Description: The bias-corrected estimation methods for the receiver operating characteristics
ROC surface and the volume under ROC surfaces (VUS) under missing at random (MAR)
Depends: R(>= 2.15.0), nnet, rgl, boot, stats, utils, graphics,

Author: Duc-Khanh To, with contributions from Monica Chiogna and Gianfranco Adimari

Depends: R(>= 3.5.0), nnet, rgl, boot, stats, utils, graphics, parallel
Suggests: webshot2, knitr, rmarkdown, markdown

Title: Advanced Analysis of B Cell Receptor Repertoire Data
Description: Methods for advanced analysis of B cell receptor repertoire data, like gene usage, mutations, clones and diversity and their visualisation.
Depends: vegan, parallel, doParallel, foreach, gplots, R (>= 3.2.2)
Suggests: stats, utils, graphics, grDevices