Description: Basic tools for applied epidemiology.
Packaged: Mon Nov  8 13:25:31 2004; Tomas

Packaged: Mon Nov 22 09:38:39 2004; Tomas

Packaged: Mon Dec 13 02:20:26 2004; Tomas

Packaged: Wed Jan 12 22:23:59 2005; Tomas

Packaged: Sun Mar 20 16:30:07 2005; Tomas

Description: A package of analytic tools for epidemiologists.
Packaged: Thu May 10 01:55:28 2007; Tomas

Description: EpiTools: R Package for Epidemiologic Data and Graphics
Packaged: Wed Jun 27 20:27:33 2007; Tomas

Packaged: Sun Jul 27 20:48:11 2008; Tomas

Authors@R: c(person("Tomas J.", "Aragon", role = "aut",
email = "aragon@berkeley.edu"), person("Michael P.",
"Fay", role = "ctb", email = "mfay@niaid.nih.gov"),
person("Daniel", "Wollschlaeger", role = "ctb", email =
person("Adam", "Omidpanah", role = c("cre", "ctb"), email =
Description: Tools for training and practicing epidemiologists including methods for two-way and multi-way contingency tables.

Packaged: 2017-10-26 18:25:13 UTC; adam.omidpanah
Author: Tomas J. Aragon [aut], Michael P. Fay
[ctb], Daniel Wollschlaeger [ctb], Adam Omidpanah [cre, ctb]

Packaged: Sat Nov  1 01:42:19 2008; Tomas

Authors@R: c(person("Tomas J. Aragon", "Developer", role = c("aut",
"cre"), email = "aragon@berkeley.edu"), person("Michael P.
Fay", "User", role = "ctb", email = "mfay@niaid.nih.gov"),
person("Daniel Wollschlaeger", "User", role = "ctb", email =
Author: Tomas J. Aragon Developer [aut, cre], Michael P. Fay User
Maintainer: Tomas J. Aragon Developer <aragon@berkeley.edu>

Packaged: 2017-03-20 17:03:35 UTC; adam.omidpanah

Packaged: 2017-04-14 17:48:42 UTC; adam.omidpanah

Description: A suite of tools to predict peptide MHC (major histocompatibility complex) presentation in the context of both human and mouse. Polymorphic peptides between self and foreign proteins are identified. The ability of peptides to bind self MHC is assessed and scored. Based on half maximal inhibitory concentration as queried through the immune epitope database API <http://tools.iedb.org/mhcii/> using user defined methods, the foreign peptides most likely to be presented are output along with their predicted binding strength, amino acid position, the protein from which each peptide was derived, and the presenting allele. "References:" Vita R, Mahajan S, Overton JA, Dhanda SK, Martini S, Cantrell JR, Wheeler DK, Sette A, Peters B. <doi:10.1093/nar/gky1006>.
Authors@R: c(person("Joan","Zhang",email = "joan.zhang@emory.edu", role = c("aut", "cre")),
person("Aileen","Johnson",email = "aileen.johnson@emory.edu ", role = c("aut")),
person("Christian P","Larsen",email = "clarsen@emory.edu", role = c("cph", "aut")))
Imports: devtools, dplyr, usethis, rstudioapi, fs, here, httr, janitor,
purrr, stringr, tibble, tidyverse, utils, readr, ggseqlogo,