Author: Elias Chaibub Neto <echaibub@hotmail.com> and Brian S. yandell <byandell@wisc.edu>
Description: Functions to Simultaneously Infer Causal Graphs and Genetic Architecture

Author: Elias Chaibub Neto <echaibub@hotmail.com> and Brian S. yandell <brian.yandell@wisc.edu>
Description: Functions to Simultaneously Infer Causal Graphs and Genetic Architecture.
Includes acyclic and cyclic graphs for data from an experimental cross with a modest number (<10) of phenotypes driven by
Chaibub Neto E, Keller MP, Attie AD, Yandell BS (2010)
Causal Graphical Models in Systems Genetics: a unified framework for joint inference of causal network and genetic architecture for correlated phenotypes.
Annals of Applied Statistics 4: 320-339.
Depends: qtl,igraph,sem,graph,pcalg, R (>= 2.10)
Packaged: 2018-04-05 19:07:34 UTC; brianyandell

Packaged: 2020-04-12 21:55:28 UTC; brianyandell

Title: Random-Effect Multiple QTL Mapping in Autopolyploids
comment = "C code for variance component tests using score statistics in R/varComp.R"),
comment = "C code for fitting mixed models with REML estimation in src/MNR.cpp")
Maintainer: Gabriel de Siqueira Gesteira <gdesiqu@ncsu.edu>
Description: Performs random-effect multiple interval mapping (REMIM) in full-sib families of autopolyploid species based on restricted maximum likelihood (REML) estimation and score statistics, as described in Pereira et al. (2020) <doi:10.1534/genetics.120.303080>.
3.9.2), CompQuadForm, Matrix, RLRsim, mvtnorm, nlme, quadprog,
parallel, stats, methods, Rcpp (>= 0.12.19)
Suggests: mappoly, rmarkdown, devtools, knitr
Packaged: 2021-11-09 18:50:36 UTC; gabrielgesteira
Author: Guilhereme da Silva Pereira [aut]
Long Qu [ctb] (C code for variance component tests using score
Giovanny Covarrubias-Pazaran [ctb] (C code for fitting mixed models

comment = "R code for variance component tests using score statistics in R/varComp.R"),
Packaged: 2022-01-12 02:55:01 UTC; gabrielgesteira
Author: Guilherme da Silva Pereira [aut]
Long Qu [ctb] (R code for variance component tests using score