Title: A Fast and Scalable Exhaustive Feature Selection Framework
Description: The goal of this package is to provide an easy to use, fast and
scalable exhaustive search framework. Exhaustive feature selections
typically require a very large number of models to be fitted and evaluated.
Execution speed and memory management are crucial factors here. This package
provides solutions for both. Execution speed is optimized by using a
multi-threaded C++ backend, and memory issues are solved by by only storing
the best results during execution and thus keeping memory usage constant.

Title: Detect CNV and LOH from Exome Sequecing Data
Author: J. Fah Sathirapongsasuti, Hane Lee, and Stanley F. Nelson
Maintainer: J. Fah Sathirapongsasuti <fsathira@fas.harvard.edu>
Description: ExomeCNV is a statistical method to detect CNV and LOH
using depth-of-coverage and B-allele frequencies from mapped
short sequence reads in exome sequencing data.

Description: ExomeCNV is a statistical method to detect CNV and LOH using depth-of-coverage and B-allele frequencies from mapped short sequence reads in exome sequencing data.

Title: Detect CNV and LOH from Exome Sequencing Data

Title: Calls Copy Number Variants from Targeted Sequence Data
Imports: Biostrings, IRanges, Rsamtools, GenomicRanges (>= 1.23.0),
aod, VGAM (>= 0.8.4), methods, GenomicAlignments, dplyr,
Authors@R: c(person("Vincent", "Plagnol", role = c("aut", "cre"), email = "vincent.plagnol@gmail.com"),
person("Gerard", "Jungman", role = "ctb", comment = "Author of included GSL fragments"),
person("Brian", "Gough", role = "ctb", comment = "Author of included GSL fragments"),
person(c("Jorma", "O"), "Tahtinen", role = "ctb", comment = "Author of included GSL fragments"),
person("Gert", "Van den Eynde", role = "ctb", comment = "Author of included GSL fragments"))
Description: Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders. The method is presented in details in Plagnol et al (2012) <https://pubmed.ncbi.nlm.nih.gov/22942019/>.
Gerard Jungman [ctb] (Author of included GSL fragments),
Brian Gough [ctb] (Author of included GSL fragments),
Jorma O Tahtinen [ctb] (Author of included GSL fragments),
Gert Van den Eynde [ctb] (Author of included GSL fragments)