Suggests: covr, dplyr, spdep, knitr, rmarkdown, testthat (>= 2.1.0),

Imports: comat, philentropy (>= 0.6.0), Rcpp, sf, stars, tibble

Title: Motif-Based Spectral Clustering of Weighted Directed Networks
Tools for spectral clustering of weighted directed networks using motif
adjacency matrices. Methods perform well on large and sparse networks, and
random sampling methods for generating weighted directed networks are also
provided. Based on methodology detailed in Underwood, Elliott and Cucuringu
Author: William George Underwood [aut, cre]
Maintainer: William George Underwood <wgu2@princeton.edu>

Title: Motif Analysis in Multi-Level Networks
Description: Tools for motif analysis in multi-level networks.
Multi-level networks combine multiple networks in one, e.g.
social-ecological networks. Motifs are small configurations of nodes
and edges (subgraphs) occurring in networks. 'motifr' can visualize
multi-level networks, count multi-level network motifs and compare
motif occurrences to baseline models. It also identifies contributions
of existing or potential edges to motifs to find critical or missing
edges. The package is in many parts an R wrapper for the excellent
'SESMotifAnalyser' 'Python' package written by Tim Seppelt.
Imports: dplyr, ggplot2 (>= 2.1.0), ggraph, igraph, intergraph,
network, purrr, RColorBrewer, reshape2, reticulate, rlang,
Suggests: ergm, knitr, pkgdown, rmarkdown, shiny, testthat (>= 2.1.0)
Config/reticulate: list( packages = list( list(package = "sma", pip =
TRUE), list(package = "networkx", pip = TRUE) ) )
SystemRequirements: Python (>= 3.0.0), numpy, pandas
Author: Mario Angst [aut, cre] (<https://orcid.org/0000-0002-8297-9827>),

Title: Models of Trait Macroevolution on Trees
Depends: R (>= 2.10.0), ape, mvtnorm, MASS, caper, laser
Description: motmot provides functions for fitting models of trait
evolution on phylogenies for continuous traits. The majority of
functions are based around tests of variation in the rates of

Author: Mark Puttick [aut, cre, cph], Gavin Thomas [aut, cph], Rob Freckleton [aut, cph], Magnus Clarke [ctb], Travis Ingram [ctb], David Orme [ctb], Emmanuel Paradis [ctb]
Description: Functions for fitting models of trait evolution
on phylogenies for continuous traits. The majority of functions
described in Thomas and Freckleton (2011) <doi:10.1111/j.2041-210X.2011.00132.x> 	and include functions that allow for tests of variation in the rates of trait evolution.
Imports: Rcpp, coda, ks, mvtnorm, caper, methods
Packaged: 2019-06-09 08:01:44 UTC; markputtick