Title: Visual Exploration of Protein Alignments Resulting from Multiple
Description: Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations.
Packaged: 2016-06-16 03:42:39 UTC; sabarlowe

Description: Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations.  SubVis requires the availability of a web browser.
Depends: R (>= 3.3.0), shiny, Biostrings
Packaged: 2016-06-29 13:21:16 UTC; sabarlowe

Description: Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations.  'SubVis' requires the availability of a web browser.
Packaged: 2017-01-06 13:12:13 UTC; sabarlowe

Packaged: 2017-01-10 04:11:54 UTC; sabarlowe

Packaged: 2017-05-08 14:28:33 UTC; sabarlowe

Title: Graphical Displays for Subgroup Analysis in Clinical Trials
person("Nicolas", "Ballarini", email = "nicolas.ballarini@meduniwien.ac.at",
person("Yi-Da", "Chiu", email = "yi-da.chiu@alumni.ucl.ac.uk",
person("Nils", "Gehlenborg", role = "ctb"),
person("Michal", "Bojanowski", role = "ctb"),
person("Robin", "Edwards", role = "ctb"))
Description: Provides functions for obtaining a variety of
graphical displays that may be useful in the subgroup analysis setting.
An example with a prostate cancer dataset is provided.
The graphical techniques considered include level plots, mosaic plots,
contour plots, bar charts, Venn diagrams, tree plots, forest plots,
Galbraith plots, L'Abbé plots, the subpopulation treatment effect pattern
plot, alluvial plots, circle plots and UpSet plots.
Imports: alluvial, circlize, colorspace, diagram, dplyr, ggplot2 (>=
2.1.1), geoR, grid, gridBase, gridExtra, methods, plyr,
polyclip, scales, shape, sp, survRM2, survival, UpSetR,