Excellence (Pavol Bauer and Stefan Engblom), the Swedish
and the Swedish Board of Agriculture (Stefan Widgren).
'siminf_model.R' 'SEIR.R' 'SIR.R' 'SISe.R' 'SISe3.R'

'SimInf_model.R' 'SEIR.R' 'SIR.R' 'SISe.R' 'SISe3.R'
'SISe3_sp.R' 'SISe_sp.R' 'SimInf.R' 'demo_model.R' 'distance.R'

Author: Stefan Widgren (National Veterinary Institute, Sweden and
the Swedish Board of Agriculture (Stefan Widgren), and by the
Swedish strategic research program eSSENCE (Stefan Widgren).
Imports: graphics, methods, stats, utils, Matrix

Authors@R: c(person("Stefan", "Widgren", role = c("aut", "cre"),
person("Robin", "Eriksson", role = "aut",
person("Stefan", "Engblom", role = "aut",
person("Attractive Chaos", role = "cph",
comment = "Author of 'kvec.h', a generic dynamic array"))
Description: Provides an efficient and very flexible framework to
conduct data-driven epidemiological modeling in realistic large
scale disease spread simulations. The framework integrates
infection dynamics in subpopulations as continuous-time Markov
chains using the Gillespie stochastic simulation algorithm and
incorporates available data such as births, deaths and movements
as scheduled events at predefined time-points. Using C code for
the numerical solvers and 'OpenMP' (if available) to divide work
over multiple processors ensures high performance when simulating
a sample outcome. One of our design goal was to make the package
extendable and enable usage of the numerical solvers from other R
extension packages in order to facilitate complex epidemiological
research. The package contains template models and can be extended
Excellence (Pavol Bauer, Robin Eriksson, and Stefan Engblom),
the Swedish Research Council Formas (Stefan Engblom and Stefan
Widgren), the Swedish Board of Agriculture (Stefan Widgren),
and by the Swedish strategic research program eSSENCE (Stefan
Imports: graphics, grDevices, methods, stats, utils, Matrix
'SEIR.R' 'SIR.R' 'SISe.R' 'SISe3.R' 'SISe3_sp.R' 'SISe_sp.R'
Author: Stefan Widgren [aut, cre] (<https://orcid.org/0000-0001-5745-2284>),
Attractive Chaos [cph] (Author of 'kvec.h', a generic dynamic array)