Title: Functions for Transforming Categorical Variables
Authors@R: person("Benjamin", "Rich", role=c("aut", "cre", "cph"), email="mail@benjaminrich.net")
Description: Easily create functions to map between different sets of values,
such as for re-labelling categorical variables.

Description: Create simple maps; add sub-plots like pie plots to a map
or any other plot; format, plot and export gridded data. The
package was developed for displaying fisheries data but most
functions can be used for more generic data visualisation.
Packaged: 2012-06-26 09:14:16 UTC; hgerritsen

Packaged: 2012-12-18 15:16:32 UTC; hgerritsen

Description: Create simple maps; add sub-plots like pie plots to a map or any other plot; format, plot and export gridded data. The package was developed for displaying fisheries data but most functions can be used for more generic data visualisation.
Packaged: 2013-07-15 15:08:14 UTC; hgerritsen

Packaged: 2018-05-22 08:36:02 UTC; hgerritsen

Packaged: 2014-10-30 16:35:49 UTC; hgerritsen

Title: Genetic Linkage Maps in Autopolyploids
comment = "C code for MLE optimization in src/pairwise_estimation.cpp"),
comment = "C code for MLE optimization in src/pairwise_estimation.cpp"))
Description: Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologs. For situations where pairwise analysis has
limited power, the algorithm relies on the multilocus likelihood
obtained through a hidden Markov model (HMM). For more detail,
please see  Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378>
Imports: Rcpp (>= 0.12.6), RCurl, plotly, fields, ggpubr, ggsci,
rstudioapi, plot3D, memuse, dplyr, crayon, cli, magrittr,
reshape2, ggplot2, smacof, princurve, dendextend, vcfR
Suggests: testthat, RColorBrewer, updog, covr, polymapR
Author: Marcelo Mollinari [aut, cre] (<https://orcid.org/0000-0002-7001-8498>),
Katharine Preedy [ctb, cph] (MDS ordering algorithm),
Robert Gentleman [cph] (C code for MLE optimization in
Ross Ihaka [cph] (C code for MLE optimization in
R Foundation [cph] (C code for MLE optimization in
R-core [cph] (C code for MLE optimization in