Description: Estimation of transition probabilities for the illness-death model. Both the Aalen-Johansen estimator for a Markov model and a novel non-Markovian estimator by de Una-Alvarez and Meira-Machado (2015) <doi:10.1111/biom.12288>, see also Balboa and de Una-Alvarez (2018) <doi:10.18637/jss.v083.i10>, are included.

Description: Classification using time-course gene expression data,
described in the following paper: Zhang Y, Tibshirani RJ, Davis
RW. Classification of patients from time-course gene

Title: Variable Selection via Threshold Partial Correlation
person("Cynthia", "Shao", email = "cynyu.shao@gmail.com", role = c("aut","trl","cre")),
Description: A threshold partial correlation approach to selecting
important variables in linear models of L. and others (2017) at
<doi:10.5705/ss.202015.0473>, and in partial linear models
This package also extends the PC-simple algorithm of
B. and others (2010) at <doi:10.1093/biomet/asq008> to

Title: Methods for Measuring Functional Diversity Based on Trait
Author: Carlos P. Carmona <perezcarmonacarlos@gmail.com>
Description: Tools to calculate trait probability density functions (TPD) at
any scale (e.g. populations, species, communities). TPD functions are used to compute
several indices of functional diversity, as well as its partition across scales.
These indices constitute a unified framework that incorporates the underlying
probabilistic nature of trait distributions into uni- or multidimensional
functional trait-based studies. See Carmona et al. (2016) <doi:10.1016/j.tree.2016.02.003> for
Imports: gridExtra (>= 0.9.1), mvtnorm (>= 0.8), graphics, stats
Packaged: 2017-11-09 07:53:49 UTC; carlosperezcarmona

Title: A Novel Topology-Based Pathway Enrichment Analysis Approach
Description: We described a novel Topology-based pathway enrichment analysis (TPEA), which integrated the global position of the nodes and the topological property of the pathways in KEGG Database.
Depends: R (>= 2.10), MESS, Matrix, foreach, utils
Packaged: 2016-08-29 07:50:14 UTC; Administrator