Package: diversitree
Title: diversitree: comparative phylogenetic tests of diversification
Version: 0.6-5
Date: 2010-04-20
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with GeoSSE by
Emma E. Goldberg <eeg@uic.edu>.
Maintainer: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>
Depends: R (>= 2.4), deSolve (>= 1.5), ape, subplex
Suggests: numDeriv, tgp, multicore, minqa
SystemRequirements: fftw3 (>= 3.1.2)
Description: Contains a number of comparative phylogenetic methods,
mostly focussing on analysing diversification and character
evolution.  Contains implementations of BiSSE (Binary State
Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
56: 701) and its unresolved tree extensions (FitzJohn et al.
2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
and Extinction), QuaSSE (Quantitative State Speciation and
Extinction; FitzJohn 2010: Syst. Biol. 69: 619), and GeoSSE
(Geographic State Speciation and Extinction; Goldberg et al.
2011: Syst. Biol.). Other included methods include Markov
models of discrete and continuous trait evolution and constant
rate speciation and extinction.
License: GPL (>= 2)
URL: http://www.zoology.ubc.ca/prog/diversitree
Packaged: 2011-04-20 22:42:30 UTC; rich
Repository: CRAN
Date/Publication: 2011-04-24 06:07:29

Package: diversitree
Title: diversitree: comparative phylogenetic tests of diversification
Version: 0.7-2
Date: 2010-05-12
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with GeoSSE by
Emma E. Goldberg <eeg@uic.edu>.
Maintainer: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>
Depends: R (>= 2.4), deSolve (>= 1.7), ape, subplex
Suggests: numDeriv, tgp, multicore, minqa
SystemRequirements: fftw3 (>= 3.1.2)
Description: Contains a number of comparative phylogenetic methods,
mostly focussing on analysing diversification and character
evolution.  Contains implementations of BiSSE (Binary State
Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
56: 701) and its unresolved tree extensions (FitzJohn et al.
2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
and Extinction), QuaSSE (Quantitative State Speciation and
Extinction; FitzJohn 2010: Syst. Biol. 69: 619), and GeoSSE
(Geographic State Speciation and Extinction; Goldberg et al.
2011: Syst. Biol.). Other included methods include Markov
models of discrete and continuous trait evolution and constant
rate speciation and extinction.
License: GPL (>= 2)
URL: http://www.zoology.ubc.ca/prog/diversitree
Packaged: 2011-05-13 02:14:58 UTC; rich
Repository: CRAN
Date/Publication: 2011-05-13 06:57:59