Description: Flexible and informed regression with Multiple Change Points. 'mcp' can infer change points in means, variances, autocorrelation structure, and any combination of these, as well as the parameters of the segments in between. All parameters are estimated with uncertainty and prediction intervals are supported - also near the change points. 'mcp' supports hypothesis testing via Savage-Dickey density ratio, posterior contrasts, and cross-validation. 'mcp' is described in Lindeløv (submitted) <doi:10.31219/osf.io/fzqxv> and generalizes the approach described in Carlin, Gelfand, & Smith (1992) <doi:10.2307/2347570> and Stephens (1994) <doi:10.2307/2986119>.
Suggests: hexbin, testthat (>= 3.1.0), purrr (>= 0.3.4), knitr,

Title: A Simplified Interface for Running Commands on Parallel
Description: Provides a function that wraps
mcparallel() and mccollect() from 'parallel' with temporary variables and a
task handler.  Wrapped in this way the results of an mcparallel() call
can be returned to the R session when the fork is complete
without explicitly issuing a specific mccollect() to retrieve the value.
Outside of top-level tasks, multiple mcparallel() jobs can be retrieved with
Imports: parallel, R.utils, ArgumentCheck, R6

Imports: parallel, R.utils, checkmate (>= 1.6.3), R6
Packaged: 2016-07-24 16:50:52 UTC; russellpierce

Package: mcpd
Type: Package
Title: Tools to analyse and use passport data for biological
collections.
Version: 1.0
Date: 2012-09-27
Author: Reinhard Simon
Maintainer: Reinhard Simon <R.SIMON@CGIAR.ORG>
Description: The package provides some tools for botanists,
taxonomists, curators of plant genebanks and perhaps other
biological collections that make use of passport data for plant
specimens in a standard format (MCPD). Currently, the tool
allows to create simple specimen indices as found in taxonomic
treatments. An example Excel file is provided. Each specimen
record must at least have content in the following fields:
GENUS, SPECIES, collector, number, ORIGCTY (names in upper case
correspond to fields defined in the MCPD standard.). In
addition, records can be removed explicitly from the generated
index putting an 'x' in the 'remove' field. Further filtering
can be done by specifying countries in the 'countries'-sheet or
allowing 'all'. Countries will be ordered alphabetically.
Species can be ordered and filtered explicitly in the sheet
'species-order'. The geographic coordinate fields 'DECLATITUDE'
and 'DECLONGITUDE' are assumed to be decimal and in WGS84
projection. As an output, a web page in standard html format is
created based on a template in markdown format. The template
may be changed and specified. The generated web-page can be
edited in most word processing software.
License: GPL (>= 2)
Depends: RODBC, knitr, markdown, stringr, plyr
Packaged: 2012-10-16 16:02:40 UTC; rsimon
Repository: CRAN
Date/Publication: 2012-10-16 16:24:35