studies and analysis types will increase in future. For a general
presentation of the package, see 'Mirazchiyski', 2021a
(<doi:10.1186/s40536-021-00114-4>). For detailed technical aspects of the
package, see 'Mirazchiyski', 2021b (<doi:10.3390/psych3020018>).
Imports: data.table, openxlsx, Hmisc, stringr, foreign, readr, stringi,
shiny, shinydashboard, DT, shinyjs, shinyFiles

Imports: DT, Hmisc, data.table, foreign, ggplot2, methods, openxlsx,
readr, shiny, shinyFiles, shinydashboard, shinyjs, stringi,

rclipboard, readr, shiny, shinyFiles, shinydashboard, shinyjs,

Title: R for Amplicon-based Metagenomics
Description: This package provides a series of functions to make amplicon-based metagenomic analysis more accessible, and publication-quality plots simple. Amplicon-based (or targeted) metagenomics amplifies and sequences selected DNA regions of environmental samples, but not the entire pool of genetic material, which is referred to as shotgun metagenomics. The amplicon-metagenomics mainly aims at characterizing broad microbiota biodiversity in different environments.
Imports: gridExtra, RColorBrewer, indicspecies, Heatplus,
splitstackshape, gplots, plyr, reshape2, scales, labdsv, grid,

Imports: gridExtra, RColorBrewer, gplots, plyr, reshape2, scales,
Suggests: testthat, Heatplus, indicspecies, lattice

labdsv, grid, ggmap, permute, VennDiagram, data.table, FD,
MASS, RgoogleMaps, ape, lattice, reshape
Suggests: testthat, mapproj, gtable, indicspecies, Heatplus

Title: R for Amplicon-Sequencing-Based Microbial-Ecology
Author: Wen Chen, Joshua Simpson, C. Andre Levesque
Description: Characterizing environmental microbiota diversity using amplicon-based next generation sequencing (NGS) data. Functions are developed to manipulate operational taxonomic unit (OTU) table, perform descriptive and inferential statistics, and generate publication-quality plots.
Imports: RColorBrewer, gplots, plyr, reshape2, scales, labdsv, grid,
gridExtra, ggmap, permute, VennDiagram, data.table, FD, MASS,
RgoogleMaps, lattice, reshape, ade4, phangorn, phytools, Hmisc,