Package: StAMPP
Type: Package
Title: Statistical Analysis of Mixed Ploidy Populations
Depends: R (>= 2.14.0), parallel, doParallel, foreach, adegenet, pegas
Version: 1.0
Date: 2013-04-05
Author: LW Pembleton
Maintainer: LW Pembleton <luke.pembleton@dpi.vic.gov.au>
Description: StAMPP allows users to calculate pairwise Nei's Genetic
Distances (Nei 1972), pairwise Fixation Indexes (Fst) (Weir &
Cockerham 1984) and also Genomic Relationship matrixes
following Yang et al. (2010) in mixed and single ploidy
populations. Bootstrapping across loci is implemented during
Fst calculation to generate confidence intervals and p-values
around pairwise Fst values. StAMPP utilises SNP genotype data
of any ploidy level (with the ability to handle missing data)
and is coded to utilise multithreading where available to allow
efficient analysis of large datasets. StAMPP is able to handle
genotype data from genlight objects allowing integration with
other packages such adegenet.  Please refer to LW Pembleton,
NOI Cogan & JW Forster, 2013, Molecular Ecology Resources,
doi:10.1111/1755-0998.12129 for the appropriate citation and
user manual. Thank you in advance.
License: GPL-3
Packaged: 2013-05-28 09:50:37 UTC; Luke
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-05-29 07:53:24

Package: StAMPP
Type: Package
Title: Statistical Analysis of Mixed Ploidy Populations
Depends: R (>= 2.14.0), parallel, doParallel, foreach, adegenet, pegas
Version: 1.1
Date: 2013-06-06
Author: LW Pembleton
Maintainer: LW Pembleton <luke.pembleton@dpi.vic.gov.au>
Description: StAMPP allows users to calculate pairwise Nei's Genetic
Distances (Nei 1972), pairwise Fixation Indexes (Fst) (Weir &
Cockerham 1984) and also Genomic Relationship matrixes
following Yang et al. (2010) in mixed and single ploidy
populations. Bootstrapping across loci is implemented during
Fst calculation to generate confidence intervals and p-values
around pairwise Fst values. StAMPP utilises SNP genotype data
of any ploidy level (with the ability to handle missing data)
and is coded to utilise multithreading where available to allow
efficient analysis of large datasets. StAMPP is able to handle
genotype data from genlight objects allowing integration with
other packages such adegenet.  Please refer to LW Pembleton,
NOI Cogan & JW Forster, 2013, Molecular Ecology Resources,
doi:10.1111/1755-0998.12129 for the appropriate citation and
user manual. Thank you in advance.
License: GPL-3
Packaged: 2013-06-06 07:06:24 UTC; Luke
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-06-06 09:41:01