Description: A package for pathway analysis in experiments with multiple perturbation designs.

Title: Direction Analysis for Pathways and Kinases
Description: Direction analysis is a set of tools designed to integrate multiple experimental treatments for analyzing pathways and kinases from microarray, RNA-seq, proteomics, or phosphoproteomics data.

Description: Direction analysis is a set of tools designed to identify
combinatorial effects of multiple treatments and/or perturbations on pathways
and kinases profiled by microarray, RNA-seq, proteomics, or phosphoproteomics

combinatorial effects of multiple treatments/conditions on pathways
data. See Yang P et al (2014) <doi:10.1093/bioinformatics/btt616>; and Yang P et al. (2016) <doi:10.1002/pmic.201600068>.
Imports: grDevices, graphics, stats, rgl, calibrate
Packaged: 2019-11-06 01:52:57 UTC; pengyiyang

Imports: grDevices, graphics, stats, plotly, calibrate

Description: Direct labeling functions meant to be used with several
plotting packages, including lattice and ggplot2.
Suggests: ks, MASS, inlinedocs, quadprog, ggplot2, lattice, alphahull,
Collate: utility.function.R compare.R dotplot.R lineplot.R
densityplot.R ggplot2.R positioning.functions.R doc.R lattice.R

Title: Direct labels for multicolor plots in lattice or ggplot2
Description: The directlabels package provides an extensible framework
for automatically placing direct labels onto multicolor lattice
or ggplot2 plots. The directlabels package includes heuristics
for examining "lattice" and "ggplot" objects and inferring an
appropriate Positioning Method for placing the labels.
Furthermore, the design of directlabels makes it simple to
create Positioning Methods for specific plots or libraries of
portable Positioning Methods that can be re-used.

Package: directlabels
Maintainer: Toby Dylan Hocking <toby.hocking@inria.fr>
Author: Toby Dylan Hocking
Version: 2.0
License: GPL-3
Title: Direct labels for multicolor plots in lattice or ggplot2
Description: The directlabels package provides an extensible framework
for automatically placing direct labels onto multicolor lattice
or ggplot2 plots. It includes heuristics for examining
"lattice" and "ggplot" objects and inferring an appropriate
Positioning Method for placing the labels. Furthermore, the
design of directlabels makes it simple to create Positioning
Methods for specific plots or libraries of portable Positioning
Methods that can be re-used.
URL: http://directlabels.r-forge.r-project.org/
LazyData: true
Suggests: ks, MASS, inlinedocs, quadprog, ggplot2, lattice, alphahull,
ElemStatLearn, proto, lars, mlmRev, latticeExtra
Depends: grid
Collate: utility.function.R compare.R dotplot.R lineplot.R
densityplot.R ggplot2.R positioning.functions.R doc.R lattice.R
scatterplot.R contourplot.R
Packaged: 2011-08-29 08:53:00 UTC; hocking
Repository: CRAN
Date/Publication: 2011-08-29 11:03:45