Title: Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data
Authors@R: c(person("Jan", "Lisec", role = c("aut", "cre"), email = "jan.lisec@bam.de"), person("Friederike", "Hoffmann", role = c("aut"), email = "Friederike.Hoffmann@charite.de"))
Description: Identifying labeled compounds in a 13C-tracer experiment in non-targeted fashion is a cumbersome process. This package facilitates such type of analyses
by providing high level quality control plots, deconvoluting and evaluating spectra and performing a multitude of tests in an automatic fashion.
The main idea is to use changing intensity ratios of ion pairs from peak list generated with 'xcms' as candidates and evaluate those against
base peak chromatograms and spectra information within the raw measurement data automatically.
Imports: xcms, plyr, openxlsx, InterpretMSSpectrum, Rdisop, beeswarm,

The functionality is described in Hoffmann et al. (2018) <doi:10.1021/acs.analchem.8b00356>.
Imports: plyr, openxlsx, InterpretMSSpectrum, Rdisop, beeswarm, Biobase

Description: Contains functions for the analysis of Discrete Time Hidden Markov Models, Markov Modulated GLMs and the Markov Modulated Poisson Process. It includes functions for simulation, parameter estimation, and the Viterbi algorithm. See the topic \code{\link{Overview}} for an introduction to the package, and \code{\link{changes}} for a list of recent changes. The algorithms are based of those of Walter Zucchini.
Packaged: Sat Nov 17 11:59:06 2007; hornik

Packaged: Thu Dec  6 11:13:02 2007; david

Packaged: Mon Feb 18 21:31:14 2008; david

Description: Contains functions for the analysis of Discrete Time Hidden Markov Models, Markov Modulated GLMs and the Markov Modulated Poisson Process. It includes functions for simulation, parameter estimation, and the Viterbi algorithm. See the topic "HiddenMarkov" for an introduction to the package, and "Changes" for a list of recent changes. The algorithms are based of those of Walter Zucchini.
Packaged: Sat Jun 21 12:04:51 2008; david