Description: Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em(), haplo.glm(), haplo.score(), and haplo.power(); all of which have detailed examples in the vignette.

Depends: R (>= 3.5.0), methods, stats, graphics, arsenal

Author: I. Y. Zhbannikov, K. G. Arbeev, A. I. Yashin
Description: A set of utilities for querying
and RegulomeDB <http://www.regulomedb.org> web-based tools. The package connects to
Haploreg or RegulomeDB, searches and downloads results, without
opening web pages, directly from R environment.
Results are stored in a data frame that can be directly used in various

person("Konstantin", "Arbeev", role = c("ctb"), comment = "Konstantin supervised the technical/software development."),
person("Anatoliy", "Yashin", role = c("ctb"), comment = "Anatoliy supervised the technical/software development and is a Principal Invesigator of this project"))
HaploReg or RegulomeDB, searches and downloads results, without
Konstantin Arbeev [ctb] (Konstantin supervised the technical/software
Anatoliy Yashin [ctb] (Anatoliy supervised the technical/software

Title: Query 'HaploReg' and 'RegulomeDB'
and 'RegulomeDB' <http://www.regulomedb.org> web-based tools. The package connects to
'HaploReg' or 'RegulomeDB', searches and downloads results, without

Title: Query 'HaploReg', 'RegulomeDB', 'LDlink'
person(c("Konstantin", "G."), "Arbeev", email = "konstantin.arbeev@duke.edu", role = c("aut")),
person(c("Anatoliy", "I."), "Yashin", email = "aiy@duke.edu", role = c("aut")))
'RegulomeDB' <http://www.regulomedb.org>, and LDlink <https://analysistools.nci.nih.gov/LDlink>
web-based tools. The package connects to
'HaploReg', 'RegulomeDB' and 'LDlink', searches and downloads results, without

'HaploReg', 'RegulomeDB' searches and downloads results, without

Title: Reconstruction of Haplotype-Blocks from Time Series Data
Author: Susanne U. Franssen, Nicholas H. Barton, Christian Schloetterer
Maintainer: Susanne U. Franssen <susefranssen@googlemail.com>
Description: Reconstruction of founder haplotype blocks from time series data.
Imports: igraph, foreach, zoo, stringi, matrixStats, gplots, stats,
Packaged: 2016-10-10 12:29:17 UTC; susefranssen