Packaged: Thu Mar 27 16:49:48 2008; eafreeman

Description: This package provides a set of functions useful when
evaluating the results of presence-absence models. Package
includes functions for calculating threshold dependant measures
such as confusion matrices, pcc, sensitivity, specificity, and
Kappa, and produces plots of each measure as the threshold is
varied. It will calculate optimal threshold choice according to
a choice of optimization criteria. It also includes functions
to plot the threshold independent ROC curves along with the
Packaged: Fri Jan 30 13:15:57 2009; eafreeman

Packaged: 2010-04-16 17:32:35 UTC; eafreeman

Packaged: 2010-12-06 20:29:13 UTC; eafreeman

includes functions for calculating threshold dependent measures
Packaged: 2012-08-17 18:15:00 UTC; eafreeman

Title: Indeterminacy of Networks via Press Perturbations
Description: This is a computational package designed to identify the most sensitive interactions within a network which must be estimated most accurately in order to produce qualitatively robust predictions to a press perturbation. This is accomplished by enumerating the number of sign switches (and their magnitude) in the net effects matrix when an edge experiences uncertainty. The package produces data and visualizations when uncertainty is associated to one or more edges in the network and according to a variety of distributions. The software requires the network to be described by a system of differential equations but only requires as input a numerical Jacobian matrix evaluated at an equilibrium point. This package is based on Koslicki, D., & Novak, M. (2017) <doi:10.1007/s00285-017-1163-0>.
Imports: data.table, ggplot2, grid, gridExtra, reticulate (>= 1.11),

Description: Defines aesthetically pleasing colour palettes.
Imports: ggplot2, graphics, grDevices, purrr
Suggests: covr, knitr, markdown, rmarkdown, testthat (>= 3.0.0)

Title: PrevMap - an R package for prevalence mapping
Author: Emanuele Giorgi, Peter J. Diggle
Description: The PrevMap package provides functions for both likelihood-based
and Bayesian analysis of spatially referenced prevalence data. 'PrevMap' is
also an extension of the 'geoR' package which should be installed first
together with the 'maxLik', 'raster' and 'pdist' packages.