Packaged: Thu Mar 31 16:10:32 2005; ramon

Author: Ramon Diaz-Uriarte <rdiaz@cnio.es> and Theodore Garland, Jr <tgarland@facstaff.wisc.edu>, <tgarland@citrus.ucr.edu>
Packaged: Tue Sep 25 17:34:29 2007; ramon

Packaged: Tue Oct  9 09:29:51 2007; ramon

Title: Poisson Hurdle Clustering for Sparse Microbiome Data
Description: Clustering analysis for sparse microbiome data, based on a Poisson hurdle model.

Title: Evaluation of the proportional hazards assumption with a
Depends: R (>= 1.8.0), survival, graphics, splines
Description: This package provides tools for the evaluation of the goodness of fit and the predictive capacity of the proportional hazards model.

Title: Evaluation of the Proportional Hazards Assumption with a
Description: Provides tools for the evaluation of the goodness of fit and the predictive capacity of the proportional hazards model.
Packaged: 2015-12-16 09:15:51 UTC; cecilechauvel

Packaged: 2018-09-13 11:35:41 UTC; formation

Description: This package enables to evaluate and plot the standardized score process of OQuigley (2003). A function to evaluate the predictive ability of the proportional hazards model with the R2 coefficient of OQuigley and Flandre (1994) is provided.

Title: Bayesian Models for Partly Interval-Censored Data
Description: Contains functions to fit proportional hazards (PH) model to partly interval-censored (PIC) data (Pan et al. (2020) <doi:10.1177/0962280220921552>), PH model with spatial frailty to spatially dependent PIC data (Pan and Cai (2021) <doi:10.1080/03610918.2020.1839497>), and mixed effects PH model to clustered PIC data. Each random intercept/random effect can follow both a normal prior and a Dirichlet process mixture prior. It also includes the corresponding functions for general interval-censored data.
Depends: R (>= 3.5.0), coda, MCMCpack, survival

Title: Self contained gene set analysis for gene- and
Description: Extension of the ARTP package for gene- and pathway-environment

Title: Self Contained Gene Set Analysis for Gene- And
Author: Benoit Liquet, Therese Truong, Camilo Broc
Description: Extension of the 'ARTP' package (Yu, K., et al. (2009) <doi:10.1002/gepi.20422>) for gene- and pathway-environment interaction. A permutation and a parametric bootstrap approaches have been implemented  for investigating gene- and pathway-environment interaction analysis (Truong, T., et al. (2014) <doi:10.1530/ERC-14-0121>).