Calculates Agresti's generalized odds ratios.

Title: Methods for Analysing Forensic Ancestry Informative Markers
Imports: leaflet, shiny, shinyjs, knitr, DT, shinycssloaders, purrr,
dplyr, magrittr, tidyr, ggplot2, tibble, forcats, readr,
rmarkdown, rio, maps, shinyWidgets, rlang
Description: Evaluates likelihood ratio tests for alleged ancestry. Implements the methods of Tvedebrink et al (2018) <doi:10.1016/j.tpb.2017.12.004>.

Title: Manages microsatellite projects.  Creates 96-well maps,
genotyping submission forms, rerun management, and import into
Maintainer: Brian J. Knaus <bknaus@fs.fed.us>
Description: Manages DNA fragment analysis projects.  Creates 96-well
maps, genotyping submission forms, rerun management, and import

Title: 'Plot genome wide values for all chromosomes'
Description: Plot values of markers(SNPs, expression, genes, RNA,...) for all chromosomes.
Packaged: 2016-04-25 08:04:48 UTC; Administrator

Title: Models Dealing with Spatial Dependency in Genomic Data
Authors@R: c(person("Chris", "Wallace", email = "cew54@cam.ac.uk", role = c("aut", "cre")),
person("Oliver", "Burren", email = "ob219@cam.ac.uk", role = c("aut")))
Description: Local structure in genomic data often induces dependence between observations taken at different genomic locations.  Ignoring this dependence leads to underestimation of the standard error of parameter estimates.  This package uses block bootstrapping to estimate asymptotically correct standard errors of parameters from any standard generalised linear model that may be fit by the glm() function.
Imports: data.table, magrittr, reshape, parallel

Title: Circular Genomic Permutation using GWAS p-values of association
Author: Claudia P.Cabrera-Cardenas,Pau Navarro,Chris S.Haley
Description: Circular genomic permutation approach uses GWAS results to
establish the significance of pathway/gene-set associations
whilst accounting for genomic structure. All SNPs in the GWAS
are placed in a 'circular genome' according to their location.
Then the complete set of SNP association p-values are permuted
by rotation with respect to the SNPs' genomic locations