Title: Generate Random Samples from the Polya-Gamma Distribution
Description: Generates random samples from the Polya-Gamma distribution using an implementation of the algorithm described in J. Windle's PhD thesis (2013) <https://repositories.lib.utexas.edu/bitstream/handle/2152/21842/WINDLE-DISSERTATION-2013.pdf>. The underlying implementation is in C.

Title: Penalized Generalized Estimating Equations for Bivariate Mixed
Authors@R: person("Ved", "Deshpande", email = "veddeshpande@gmail.com",
Description: Perform simultaneous estimation and variable selection for correlated bivariate
mixed outcomes (one continuous outcome and one binary outcome per cluster) using
penalized generalized estimating equations. In addition, clustered Gaussian and binary
outcomes can also be modeled. The SCAD, MCP, and LASSO penalties are supported.
Cross-validation can be performed to find the optimal regularization parameter(s).

Title: Quality speedy graphics compilation with Sweave
Author: Cameron Bracken <cameron.bracken@gmail.com> and Charlie
Depends: utils, stashR, filehash, tikzDevice, cacheSweave, getopt
Description: The pgfSweave package provides capabilities for 'caching'
graphics generated with Sweave.  Using pgfSweave, figure labels
are converted to LaTeX strings so not only do they match the
style of the document but math can be put in labels. pgfSweave
provides a new driver for Sweave (pgfSweaveDriver) and new
chunk options tikz, pgf and external on top of the cache option
provided by cacheSweave. This package is built upon cacheSweave

Depends: stashR, filehash, tikzDevice, cacheSweave, getopt
for the vignette and for externalization.

Depends: stashR, filehash, tikzDevice, cacheSweave, getopt, highlight
Description: pgfSweave provides a number of improvements to the improve
speed and quality of the Sweave output including: (1)
capabilities for 'caching' graphics generated with Sweave on
top of the caching mechanisms provided by cacheSweave, (2) an
interface to the tikzDevice package which provides graphics
with consistent font style, sizing and quality as the main
document and (3) highlighting of echo'd source code via the
highlight package. pgfSweave provides a new driver for Sweave
(pgfSweaveDriver) with new chunk options tikz, pgf, external,
sanitize, highlight and tidy on top of the cache option