R port by Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Description: David Scott's ASH routines ported from S-PLUS to R.

Packaged: Tue May 25 08:53:16 2004; agebhard

Author: Matthew Stephens, Chaoxing Dai, Mengyin Lu, David Gerard, Nan Xiao, Peter Carbonetto
Title: Methods for Adaptive Shrinkage, using Empirical Bayes
Description: The R package 'ashr' implements an Empirical Bayes approach for large-scale hypothesis testing and false discovery rate (FDR) estimation based on the methods proposed in M. Stephens, 2016, "False discovery rates: a new deal", <DOI:10.1093/biostatistics/kxw041>. These methods can be applied whenever two sets of summary statistics---estimated effects and standard errors---are available, just as 'qvalue' can be applied to previously computed p-values. Two main interfaces are provided: ash(), which is more user-friendly; and ash.workhorse(), which has more options and is geared toward advanced users.
Imports: assertthat, truncnorm, SQUAREM, doParallel, pscl, Rcpp (>=

Description: The R package 'ashr' implements an Empirical Bayes
approach for large-scale hypothesis testing and false discovery
rate (FDR) estimation based on the methods proposed in
M. Stephens, 2016, "False discovery rates: a new deal",
<DOI:10.1093/biostatistics/kxw041>. These methods can be applied
whenever two sets of summary statistics---estimated effects and
standard errors---are available, just as 'qvalue' can be applied
to previously computed p-values. Two main interfaces are
provided: ash(), which is more user-friendly; and ash.workhorse(),
which has more options and is geared toward advanced users. The
ash() and ash.workhorse() also provides a flexible modeling
interface that can accomodate a variety of likelihoods (e.g.,
normal, Poisson) and mixture priors (e.g., uniform, normal).
Imports: Matrix, stats, graphics, assertthat, truncnorm, mixsqp,
SQUAREM, doParallel, pscl, Rcpp (>= 0.10.5), foreach, etrunct
Suggests: testthat, knitr, rmarkdown, ggplot2, REBayes

interface that can accommodate a variety of likelihoods (e.g.,
Imports: Matrix, stats, graphics, Rcpp (>= 0.10.5), truncnorm, mixsqp,