Maintainer: Anthony la Grange <amlg@sun.ac.za>
Depends: R (>= 2.7.0), MASS, tcltk, tcltk2 (>= 1.0-7), tkrplot (>=
Suggests: KernSmooth, rgl (>= 0.79), vcd, xlsReadWrite
Description: Provides a GUI with which users can construct and interact
Packaged: Tue Aug 12 04:33:13 2008; theussl

Author: Anthony la Grange, with some Fortran code adapted by NJ le Roux
from the original by PJ Rousseeuw, I Ruts and JW Tukey
Packaged: Sat Mar 14 19:06:06 2009; Administrator

Imports: colorspace, KernSmooth, MASS, xlsReadWrite
Packaged: Sun Mar 1 21:28:26 2009; Administrator

Packaged: 2009-09-22 09:18:02 UTC; Administrator

Packaged: 2010-02-14 18:17:53 UTC; Administrator

Maintainer: Niel le Roux <njlr@sun.ac.za>

Title: Biplots Estimation with Algorithms ML
Maintainer: Jose Giovany Babativa-Marquez <gbabativam@gmail.com>
Depends: R (>= 4.1), optimr, optimx, shapes
Description: Logistic Biplot is a method that allows representing multivariate binary data on a subspace of low dimension, where each individual is represented by a point and each variable as vectors directed through the origin. The orthogonal projection of individuals onto these vectors predicts the expected probability that the characteristic occurs. The package contains new techniques to estimate the model parameters and constructs in each case the 'Logistic-Biplot'. References can be found in the help of each procedure.
Suggests: testthat, knitr, rmarkdown, RSpectra, dplyr (>= 1.0.0), tidyr
(>= 1.1.0), ggplot2 (>= 3.3.2), ggrepel, pracma, mvtnorm
Author: Jose Giovany Babativa-Marquez [cre, aut]

Title: Analysis of RNA Cytosine-5 Methylation
Description: Bisulfite-treated RNA non-conversion in a set of samples is analysed as
follows: each sample's Poisson parameter is estimated, and non-conversion
p-values are calculated for each sample and adjusted for multiple testing.
Finally, combined non-conversion p-value and standard error of the non-conversion
are calculated on the intersection of the set of samples.
A low combined non-conversion p-value points to methylation of the
corresponding RNA cytosine, or another event blocking bisulfite conversion.
Imports: MASS, knitr, graphics, stats, utils