Package: msarc
Version: 1.4.5
License: Artistic-2.0
Date: 2015-01-12
Title: Draw Diagrams (mis)Representing the Results of Mass Spec
Experiments
Author: Gord Brown, Hisham Mohammed
Maintainer: Gord Brown <gdbzork@gmail.com>
Depends: R (>= 3.1.0)
Imports: AnnotationDbi, gplots, XLConnect, wordcloud, RColorBrewer
Suggests: GO.db, org.Hs.eg.db, org.Mm.eg.db
Description: The output of an affinity-purification mass spectrometry
experiment is typically a list of proteins that were observed
in the experiment, identified by UniProt identifiers
(http://www.uniprot.org/).  This package takes as input a list of
UniProt identifiers, and the associated Mascot scores from the
experiment (which indicate the likelihood that the protein has
been correctly identified), clusters them by gene ontology
category (http://geneontology.org/), then draws diagrams
showing the results in hierarchical clusters by category, with lines
for individual proteins representing the associated Mascot score.
The results are in general not publication-ready, but will rather
require editing via a graphics editor that can interpret SVG (scalable
vector graphics) format.  As an alternative representation, the
package will also generate tag clouds based on the Mascot scores.
NeedsCompilation: no
Packaged: 2015-01-27 15:03:07 UTC; brown22
Repository: CRAN
Date/Publication: 2015-01-27 16:55:53

Title: Calibration and filtering of MALDI-TOF Peptide Mass Fingerprint data.
Author: Eryk Witold Wolski <w.wolski@molgen.mpg.de>
Maintainer: Eryk Witold Wolski <w.wolski@molgen.mpg.de>
Description: Calibration and filtering of MALDI-TOF Peptide Mass Fingerprint data.

Maintainer: Witold E. Wolski <wolski@molgen.mpg.de>

Packaged: Wed Apr 28 08:15:45 2004; wolski

Description: Calibration and filtering methods for calibration of mass spectrometric peptide mass lists. Includes methods for internal, external calibration of mass lists. Provides methods for filtering chemical noise and peptide contaminants.
Packaged: Tue May 25 13:36:26 2004; wolski

Title: Hazard of Multi-Stage Clonal Expansion Models
Author: Cristoforo Simonetto [aut, cre],
Description: Functions to calculate hazard and survival function of Multi-Stage Clonal Expansion Models used in cancer epidemiology. For the Two-Stage Clonal Expansion Model an exact solution is implemented assuming piecewise constant parameters. Numerical solutions are provided for its extensions.
Imports: Rcpp (>= 1.0.3), RcppParallel (>= 5.0.0)
Packaged: 2020-10-20 15:14:23 UTC; cristoforo