Description: Provides functions for fitting phylogenetic linear models and phylogenetic generalized linear models. The computation uses an algorithm that is linear in the number of tips in the tree. The package also provides functions for simulating continuous or binary traits along the tree. Other tools include functions to test the adequacy of a population tree.

Title: Estimating Statistical Errors of Phylogenetic Metrics
Author: Xia Hua <xia.hua@anu.edu.au>, Lindell Bromham
Description: Provides functions to estimate statistical errors of phylogenetic
metrics particularly to detect binary trait influence on diversification, as
well as a function to simulate trees with fixed number of sampled taxa and trait

Title: Perform Phylogenetic Path Analysis
Maintainer: Wouter van der Bijl <wouter.van.der.bijl@zoologi.su.se>
Description: A comprehensive and easy to use R implementation of confirmatory
phylogenetic path analysis as described by Von Hardenberg and Gonzalez-Voyer
Imports: ape, DiagrammeR, dplyr, ggm, ggplot2, igraph, MuMIn, nlme,

Imports: ape, DiagrammeR (>= 0.9.0), dplyr, ggm, ggplot2, igraph,
MuMIn, nlme, parallel, pbapply, purrr, tibble, tidyr

Authors@R: person("Wouter", "van der Bijl",
Imports: ape, dplyr, ggm, ggplot2, ggraph, igraph, MuMIn, nlme,

1.15.6), parallel, pbapply (>= 1.3-2), phylolm (>= 2.5), purrr

Maintainer: Wouter van der Bijl <wouter@zoology.ubc.ca>

Title: Biogeographic Regionalization and Spatial Conservation
Authors@R: c(person("Barnabas H.", "Daru", email= "darunabas@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-2115-0257")),
person("Piyal", "Karunarathne", role = c("aut")),
person("Klaus", "Schliep", email="klaus.schliep@gmail.com", role = c("aut"), comment = c(ORCID = "0000-0003-2941-0161")),
Description: Computational infrastructure for biogeography, community ecology,
and biodiversity conservation (Daru et al. 2020) <doi:10.1101/2020.02.12.945691>. It is
based on the conceptual work in Daru et al.(2017) <doi:10.1016/j.tree.2017.08.013> on
patterns and processes of biogeographical regionalization. Additionally, the package
contains fast and efficient functions to compute more standard conservation measures
such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness
and global endangerment, as well as compositional turnover (e.g., beta diversity).
Imports: ape, phangorn, Matrix, betapart, fastmatch, parallel, methods,
raster, data.table, colorspace, cluster, rgeos, vegan, sp,
Packaged: 2020-03-29 15:44:14 UTC; barnabasdaru
Author: Barnabas H. Daru [aut, cre, cph]
Maintainer: Barnabas H. Daru <darunabas@gmail.com>