Description: We described a novel Topology-based pathway enrichment analysis, which integrated the global position of the nodes and the topological property of the pathways in  Kyoto Encyclopedia of Genes and Genomes Database.
We also provide some functions to obtain the latest information about pathways to finish pathway enrichment analysis using this method.
Depends: R (>= 2.10), MESS, Matrix, foreach
Packaged: 2016-10-26 00:42:24 UTC; Administrator

Packaged: 2017-06-14 06:53:03 UTC; Administrator

Packaged: 2017-01-03 00:27:46 UTC; Administrator

Packaged: 2017-06-25 01:36:20 UTC; Administrator

Title: Tumor Purity Estimation using SNVs
Author: Alessio Locallo <alessio.locallo@gmail.com>, Davide Prandi <davide.prandi@unitn.it>, Francesca Demichelis <f.demichelis@unitn.it>
Description: A bioinformatics tool for the estimation of the tumor purity from sequencing data.
It uses the set of putative clonal somatic single nucleotide variants within copy number neutral

Title: Thresholded Partial Least Squares Model for Neuroimaging Data
Description: Uses thresholded partial least squares algorithm to create a regression or classification model.

Description: Uses thresholded partial least squares algorithm to create a regression or classification model. For more information, see Lee, Bradlow, and Kable <doi:10.1101/2021.02.09.430524>.

Description: Uses thresholded partial least squares algorithm to create a regression or classification model. For more information, see Lee, Bradlow, and Kable <doi:10.1016/j.crmeth.2022.100227>.

Title: Tool-Kit for Dynamic Materials Model and Thermal Processing Maps
Authors@R: person("ZHANG_Chen", "Developer", email = "447974102@qq.com", role = c("aut", "com", "cre"))
Description: Provides a simple approach for constructing dynamic materials
modeling suggested by Prasad and Gegel <doi:10.1007/BF02664902>. It
can easily generate various processing-maps based on this model as well. The
calculation result in this package contains full materials constants, information
about power dissipation efficiency factor, and rheological properties, can
be exported completely also, through which further analysis and customized
Imports: VBTree, ggplot2, rgl, e1071, qpcR, grDevices, rowr, graphics,
Author: ZHANG_Chen Developer [aut, com, cre]