Title: Encode "License-Plates" from Sequences and Decode Them Back
Description: It can be used to create/encode molecular "license-plates" from sequences and to also decode the "license-plates" back to sequences.  While initially created for transfer RNA-derived small fragments, this tool can be used for any genomic sequences including but not limited to: transfer RNA-derived small fragments, microRNAs, etc. The detailed information can reference to the Pliatsika V, Loher P, Telonis AG, Rigoutsos I (2016) <doi:10.1093/bioinformatics/btw194>.

Description: It can be used to create/encode molecular "license-plates" from sequences and to also decode the "license-plates" back to sequences.  While initially created for transfer RNA-derived small fragments (tRFs), this tool can be used for any genomic sequences including but not limited to: tRFs, microRNAs, etc. The detailed information can reference to Pliatsika V, Loher P, Telonis AG, Rigoutsos I (2016) <doi:10.1093/bioinformatics/btw194>. It can also be used to annotate tRFs. The detailed information can reference to Loher P, Telonis AG, Rigoutsos I (2017) <doi:10.1038/srep41184>.

Title: Mutant Identification through Phenotypic High throughput Enabled
Author: Shannon M. Bell <bell.shannonm@gmail.com>,  Lyle D. Burgoon <burgoon.lyle@epa.gov>
Maintainer: Shannon M. Bell <bell.shannonm@gmail.com>
Description: This package contains functions to carry out processing of high throughput data analysis and detection of putative hits/mutants.
Contents include a function for post-hoc quality control for removal of outlier sample sets, a median-based normalization method for use in
datasets where there are no explicit controls and where most of the responses are of the wildtype/no response class (see accompanying paper).
The package also includes a way to prioritize individuals of interest using am empirical cumulative distribution function. Methods for
generating synthetic data as well as data from the Chloroplast 2010 project are included.