Description: Modelling interacting microbial populations - example applications
include human gut microbiota, rumen microbiota and phytoplankton. Solves a
system of ordinary differential equations to simulate microbial growth and

Title: Process-Based Modelling of Microbial Populations
resource uptake over time. This version contains network visualisation functions.
Suggests: rmarkdown, R.rsp, knitr, webshot

Title: Microbiota STability ASsessment via Iterative cluStering
Description: The toolkit 'µSTASIS' has been developed for the stability analysis of microbiota in a temporal framework by leveraging on iterative clustering. Concretely, the core function uses Hartigan-Wong k-means algorithm as many times as possible for stressing out paired samples from the same individuals to test if they remain together for multiple numbers of clusters over a whole data set of individuals. Moreover, the package includes multiple functions to subset samples from paired times, validate the results or visualize the output.
Imports: crayon, fmsb, future, future.apply, ggplot2, ggside,
Packaged: 2021-09-13 10:28:47 UTC; biotechpedro
Author: Pedro Sánchez-Sánchez [aut, cre]

Title: An Implementation of Bat Algorithm in R
Author: Seong Hyun Hwang with contributions from Rachel Myoung Moon
Maintainer: Seong Hyun Hwang <krshh1412@gmail.com>
Description: A nature-inspired metaheuristic algorithm based on the echolocation behavior of microbats that uses frequency tuning to optimize problems in both continuous and discrete dimensions. This R package makes it easy to implement the standard bat algorithm on any user-supplied function. The algorithm was first developed by Xin-She Yang in 2010 (<DOI:10.1007/978-3-642-12538-6_6>, <DOI:10.1109/CINTI.2014.7028669>).

Title: Sub microsecond accurate timing functions.

Collate: 'autoplot.R' 'boxplot.R' 'internal.R' 'microbenchmark.R'

SystemRequirements: On a Unix-alike, one of the C functions
mach_absolute_time (macOS), clock_gettime or gethrtime. If none
of these is found, the obsolescent POSIX function gettimeofday