Packaged: 2022-07-05 21:05:00 UTC; matheuspimenta

Description: It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of maximum entropy for the purpose of making a classification between the classes of the sequences. There are two data present in the 'BASiNET' package, "mRNA", and "ncRNA" with 10 sequences. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples.
Packaged: 2022-07-06 11:22:19 UTC; matheuspimenta

Packaged: 2022-08-26 14:01:50 UTC; matheuspimenta

Author: Pedro Cardoso, Francois Rigal, Jose Carlos Carvalho
Description: This package introduces algorithms to assess alpha and beta
diversity in all their dimensions (taxon, phylogenetic and functional
diversity), whether communities are completely sampled or not. It allows
performing a number of analyses based on either species identities or
ultrametric trees depicting species relationships.

Description: Includes algorithms to assess alpha and beta
Depends: R (>= 3.0.0), vegan, spatstat, nls2
Packaged: 2015-01-13 11:05:30 UTC; localadmin_pcardoso

Packaged: 2015-02-12 08:20:47 UTC; localadmin_pcardoso

phylogenetic/functional trees depicting species relationships.
Packaged: 2015-04-16 07:01:38 UTC; localadmin_pcardoso

Depends: R (>= 3.0.0), graphics, nls2, spatstat, stats, vegan

Packaged: 2015-09-30 13:16:03 UTC; localadmin_pcardoso

Depends: R (>= 3.0.0), graphics, nls2, raster, spatstat, stats, utils,
Packaged: 2016-04-21 09:35:37 UTC; localadmin_pcardoso

Packaged: 2016-09-14 14:38:03 UTC; localadmin_pcardoso

Imports: graphics, nls2, raster, spatstat, stats, utils, vegan
Packaged: 2016-12-03 17:03:14 UTC; localadmin_pcardoso

Packaged: 2017-06-27 13:04:18 UTC; localadmin_pcardoso

Imports: graphics, hypervolume, nls2, raster, spatstat, stats, utils,

Author: Pedro Cardoso, Stefano Mammola, Francois Rigal, Jose Carlos Carvalho
phylogenetic/functional trees or functional kernel n-dimensional hypervolumes