Title: Deconvolute Mixed Genomes with Unknown Proportions
person("Joe", "Zhu", role=c("aut", "cre", "cph"), email="joe.zhu@well.ox.ac.uk")
Description: Traditional phasing programs are limited to diploid organisms.
Our method modifies Li and Stephens algorithm with Markov chain Monte Carlo
(MCMC) approaches, and builds a generic framework that allows haplotype searches
in a multiple infection setting. This package is primarily developed as part of
the Pf3k project, which is a global collaboration using the latest
sequencing technologies to provide a high-resolution view of natural variation
in the malaria parasite Plasmodium falciparum. Parasite DNA are extracted from
patient blood sample, which often contains more than one parasite strain, with
unknown proportions. This package is used for deconvoluting mixed haplotypes,
and reporting the mixture proportions from each sample.
Suggests: knitr, rmarkdown, testthat (>= 0.9.0)

person("Joe", "Zhu", role=c("aut", "cre", "cph"), email="joe.zhu@well.ox.ac.uk"),
person('University of Oxford', '', role=c('cph')),
person('CodeCogs', 'Zyba Ltd', role=c('com', "cph")),

magrittr (>= 1.5), rmarkdown(>= 1.6), htmlwidgets (>= 1.0)

person("Joe", "Zhu", role=c("aut", "cre", "cph"), email="joe.zhu@bdi.ox.ac.uk"),

person("Joe", "Zhu", role=c("aut", "cre", "cph"), email="sha.joe.zhu@gmail.com"),

Author: Victor Barreto Mesquita[aut,cre],Paulo Canas Rodrigues[ctb], Florencio Mendes Oliveira Filho[ctb]
Maintainer: Victor Barreto Mesquita <victormesquita40@hotmail.com>
Description: Contains the Detrended Fluctuation Analysis (DFA), Detrended Cross-Correlation Analysis (DCCA), Detrended Cross-Correlation Coefficient (rhoDCCA), Delta Amplitude Detrended Cross-Correlation Coefficient (DeltarhoDCCA), log amplitude Detrended Fluctuation Analysis (DeltalogDFA), two DFA automatic methods for identification of crossover points and a Deltalog automatic method for identification of reference channels.

Title: Linear Discriminant Function and Canonical Correlation Analysis
Maintainer: Brian P. O'Connor  <brian.oconnor@ubc.ca>
Produces SPSS- and SAS-like output for linear discriminant
function analysis and canonical correlation analysis. The methods are described in
Imports: MASS, MVN, graphics, utils, stats
Packaged: 2020-01-27 05:11:28 UTC; brianoconnor