person("Elizabeth", "Allman", email = "esallman@alaska.edu",
person("Hector", "Banos", email = "hbassnos@gmail.com",
person("Jonathan", "Mitchell", email = "jonathanmitchell88@gmail.com",
person("John", "Rhodes", email = "j.rhodes@alaska.edu",
Mitchell et al. (2019) <doi:10.1214/19-EJS1576>, simplex plots of quartet concordance factors
as presented by Allman et al. (2020) <doi:10.1101/2020.02.13.948083>, species tree inference methods
Yourdkhani and Rhodes (2019) <doi:10.1007/s11538-020-00773-4>, and the NANUQ algorithm for inference of level-1
species networks of Allman et al. (2019) <doi:10.1186/s13015-019-0159-2>. Software announcement by
Rhodes et al. (2020) <doi:10.1093/bioinformatics/btaa868>.
Imports: RandomFieldsUtils, zipfR, graphics, stats, Rdpack, foreach,
Packaged: 2021-01-07 18:43:35 UTC; johnrhodes

Packaged: 2022-04-14 00:41:23 UTC; johnrhodes

Title: Tests of Multispecies Coalescent Gene Tree Simulator Output
person("Elizabeth", "Allman", email = "e.allman@alaska.edu", role = c("aut", "cre", "cph")),
person("Hector", "Banos", email = "hbassnos@gmail.com", role = c("aut", "cph")),
person("John", "Rhodes", email = "j.rhodes@alaska.edu", role = c("aut", "cph")))
Description: Statistical tests for validating multispecies coalescent gene tree simulators, using pairwise distances and rooted triple counts. Background is given by Allman, Banos, and Rhodes (2019) <arXiv:1908.01424>.
Imports: Rdpack, kSamples, graphics, stats
Author: Elizabeth Allman [aut, cre, cph],

Title: Management Strategy Evaluation Toolkit
Authors@R: c(person("Quang", "Huynh", email = "q.huynh@oceans.ubc.ca", role = "aut"),
person("Tom", "Carruthers", email = "t.carruthers@oceans.ubc.ca", role = c("aut", "cre")),
person("Adrian", "Hordyk", email = "a.hordyk@oceans.ubc.ca", role = "aut"),
person("Chris", "Grandin", rol = "ctb", comment = "iSCAM functions"))
Description: Simulation tools for management strategy evaluation are provided for the 'DLMtool' operating model to inform data-rich fisheries.
'MSEtool' provides complementary assessment models of varying complexity with standardized reporting, diagnostic tools for evaluating
assessment models within closed-loop simulation, and helper functions for building more complex operating models and management procedures.
Imports: MASS, TMB, coda, corpcor, gplots, grDevices, graphics,
methods, mvtnorm, pryr, r4ss (<= 1.24.0), reshape2, snowfall,