Copyright: See the file COPYRIGHTS for various N2R copyright details
Packaged: 2020-11-23 22:02:54 UTC; evanbiederstedt

Packaged: 2021-11-19 20:20:01 UTC; evanbiederstedt

Packaged: 2022-01-18 02:29:09 UTC; evanbiederstedt

Title: NanoString Quality Control Dashboard
person(given = "Mickaël", family = "Canouil", role = c("aut", "cre"), email = "mickael.canouil@cnrs.fr",
person(given = "Roderick", family = "Slieker", role = "aut", email = "R.C.Slieker@lumc.nl",
person(given = "Gerard", family = "Bouland", role = "aut", email = "G.A.Bouland@lumc.nl")
Description: NanoString nCounter data are gene expression assays where there is no need for the use of enzymes
or amplification protocols and work with fluorescent barcodes (Geiss et al. (2018) <doi:10.1038/nbt1385>).
Each barcode is assigned a messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its target can be counted.
As a result each count of a specific barcode represents the presence of its target mRNA/miRNA.
'NACHO' (NAnoString quality Control dasHbOard) is able to analyse the exported NanoString nCounter
data and facilitates the user in performing a quality control.
'NACHO' does this by visualising quality control metrics, expression of control genes,
principal components and sample specific size factors in an interactive web application.
Imports: tibble, dplyr, tidyr, purrr, shiny, scales, ggplot2,
Suggests: covr, Biobase, GEOquery, utils, sessioninfo, knitr,
Author: Mickaël Canouil [aut, cre] (<https://orcid.org/0000-0002-3396-4549>),

Imports: utils, tibble, dplyr, tidyr, shiny, scales, ggplot2,
ggbeeswarm, ggrepel, ggpubr, gtools, magrittr, knitr,
Suggests: covr, Biobase, GEOquery, testthat

SystemRequirements: pandoc (>= 1.12.3), pandoc-citeproc

Description: NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
<doi:10.1038/nbt1385>).  Each barcode is assigned a
messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
target can be counted.  As a result each count of a specific barcode
represents the presence of its target mRNA/miRNA.  'NACHO' (NAnoString
quality Control dasHbOard) is able to analyse the exported NanoString
nCounter data and facilitates the user in performing a quality
control.  'NACHO' does this by visualising quality control metrics,
expression of control genes, principal components and sample specific
size factors in an interactive web application.
Suggests: Biobase, covr (>= 3.3.2), GEOquery, limma, roxygen2 (>=