Raymaekers and Rousseeuw (2020) <doi:10.52933/jdssv.v1i3.18> (open access).
"DDC_examples", "MacroPCA_examples", "wrap_examples", "transfo_examples", "DI_examples" and "cellMCD_examples".

Title: Cell Type Pipes for Single-Cell RNA Sequencing Data
Description: Annotate single-cell RNA sequencing data manually based on
Find cell type rules (gene+threshold) through exploration,
use the popular piping operator '%>%' to reconstruct complex
'cellpypes' models technical noise to find positive and negative cells for
a given expression threshold and returns cell type labels or pseudobulks.
Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and
visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, Seurat, DESeq2,
Imports: scUtils, ggplot2, Matrix, rlang, viridis, cowplot, dplyr,

Title: Translate Spreadsheet Cell Ranges to Rows and Columns
person("Jennifer", "Bryan", , "jenny@stat.ubc.ca", c("cre", "aut")),
person("Hadley", "Wickham", , "hadley@rstudio.com", "ctb")
Description: Helper functions to work with spreadsheets and the "A1:D10" style

Suggests: covr, testthat (>= 1.0.0), knitr, rmarkdown

Authors@R: c(person("Johannes", "Textor", role = c("aut", "cre"),
person("Katharina", "Dannenberg", role = "aut"),
person("Jeffrey", "Berry", role = "aut" ),
person("Gerhard", "Burger", role = "aut"),
Description: Provides methodology to analyze cells that move in a two- or three-dimensional
space. Available measures include displacement, confinement ratio, autocorrelation,
straightness, turning angle, and fractal dimension. Measures can be applied to entire tracks,
steps, or subtracks with varying length. While the methodology has been developed for
cell trajectory analysis, it is applicable to anything that moves including animals,
Some of the methodology implemented in this packages was described by:
Beauchemin, Dixit, and Perelson (2007) <doi:10.4049/jimmunol.178.9.5505>,
Beltman, Maree, and de Boer (2009) <doi:10.1038/nri2638>,
Mokhtari, Mech, Zitzmann, Hasenberg, Gunzer, and Figge (2013) <doi:10.1371/journal.pone.0080808>,
Moreau, Lemaitre, Terriac, Azar, Piel, Lennon-Dumenil, and Bousso (2012) <doi:10.1016/j.immuni.2012.05.014>,
Textor, Peixoto, Henrickson, Sinn, von Andrian, and Westermann (2011) <doi:10.1073/pnas.1102288108>,
Textor, Henrickson, Mandl, von Andrian, Westermann, de Boer, and Beltman (2014) <doi:10.1371/journal.pcbi.1003752>.
Suggests: pracma, scatterplot3d, fractaldim, testthat, wordspace,
knitr, rmarkdown, uwot, dendextend, ggplot2, ggbeeswarm,
Packaged: 2020-03-30 13:48:09 UTC; ingewortel