Title: R Code for mark-recapture analysis
Author: Jeff Laake <jeff.laake@noaa.gov>, Devin Johnson
Description: This package provides a framework for handling data and
analysis for mark-recapture.  Currently it is limited to
Depends: R (>= 2.12.0), optimx, coda, truncnorm, Matrix, Rcpp (>=
SystemRequirements: ADMB version 11 (http://admb-project.org/) for
Collate: 'cjs.accumulate.R' 'cjs.initial.R' 'cjs.lnl.r' 'cjs.R'

Title: Mark-Recapture Analysis for Survival and Abundance Estimation
Description: Functions for fitting various models to capture-recapture data
including fixed and mixed-effects Cormack-Jolly-Seber(CJS) for survival
estimation and POPAN structured Jolly-Seber models for abundance
estimation. Includes a CJS models that concurrently estimates and corrects
for tag loss. Hidden Markov model (HMM) implementations of CJS and
multistate models with and without state uncertainty.
Depends: R (>= 2.15.0), lme4, methods, parallel
Imports: graphics, stats, utils, R2admb, truncnorm, coda, ggplot2,
Matrix, numDeriv, expm, Rcpp (>= 0.9.13), optimx (>= 2013.8.6)

Imports: graphics, stats, utils, R2admb, truncnorm, coda, Matrix,

SystemRequirements: ADMB version 11 <http://admb-project.org/> for

Imports: R2admb, truncnorm, coda, optimx (>= 2013.8.6), ggplot2,

Description: This package provides a framework for handling
Currently it is limited to Cormack-Jolly-Seber and
Matrix, numDeriv, Rcpp (>= 0.9.13), plyr

Imports: R2admb, truncnorm, coda, ggplot2, Matrix, numDeriv, Rcpp (>=

Author: Jeff Laake <jefflaake@gmail.com>, Devin Johnson
<devin.johnson@noaa.gov>, Paul Conn <paul.conn@noaa.gov>, example for simHMM
including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and
the multi-variate state model structure for survival
estimation and POPAN structured Jolly-Seber models for abundance estimation.
There are also Hidden Markov model (HMM) implementations of CJS and multistate
models with and without state uncertainty and a simulation capability for HMM
Depends: R (>= 3.2.0), lme4, methods, parallel
Packaged: 2018-03-29 22:11:36 UTC; jefflaake