Author: Ramon Diaz-Uriarte <rdiaz02@gamil.com>, Oscar M. Rueda
<rueda.om@gamil.com>. Wavelet-based aCGH smoothing code from Li
Hsu <lih@fhcrc.org> and Douglas Grove <dgrove@fhcrc.org>.
<B.Rowlingson@lancaster.ac.uk>. HaarSeg code from Erez
Depends: R (>= 2.2.1), cgh, tilingArray, aCGH, cghMCR, papply, GDD,
Circular Binary Segementation, wavelet-based smoothing (both as
in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), , ACE
method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and Price's
modification of Smith & Waterman's algorith. Most computations
are parallelized. Figures are imagemaps with links to IDClight

Package: ADaCGH
Version: 1.3-4
Date: 2007-10-04
Title: Analysis of data from aCGH experiments
Author: Ramon Diaz-Uriarte <rdiaz02@gamil.com>, Oscar M. Rueda <omrueda@cnio.es>. Wavelet-based aCGH smoothing code from Li Hsu <lih@fhcrc.org> and Douglas Grove <dgrove@fhcrc.org>. Imagemap code from Barry Rowlingson <B.Rowlingson@lancaster.ac.uk>
Maintainer: Ramon Diaz-Uriarte <rdiaz02@gmail.com>
Depends: R (>= 2.2.1), cgh, tilingArray, aCGH, cghMCR, GLAD, papply, GDD, waveslim, cluster, snapCGH, DNAcopy, Hmisc
Suggests: Rmpi
Description: Analysis and plotting of array CGH data. Allows usage of
Circular Binary Segementation, wavelet-based smoothing, ACE
method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and  Price's modification of Smith &
Waterman's algorith. Most computations are
parallelized. Figures are imagemaps with links to IDClight
(http://idclight.bioinfo.cnio.es).
LazyLoad: Yes
License: GPL version 2 or newer
URL: http://www.r-project.org, http://adacgh2.bioinfo.cnio.es, http://launchpad.net/adacgh
Packaged: Thu Oct  4 14:43:47 2007; ramon

Package: ADaCGH
Version: 1.3-7
Date: 2008-04-30
Title: Analysis of data from aCGH experiments
Author: Ramon Diaz-Uriarte <rdiaz02@gamil.com>, Oscar M. Rueda <omrueda@cnio.es>. Wavelet-based aCGH smoothing code from Li Hsu <lih@fhcrc.org> and Douglas Grove <dgrove@fhcrc.org>. Imagemap code from Barry Rowlingson <B.Rowlingson@lancaster.ac.uk>
Maintainer: Ramon Diaz-Uriarte <rdiaz02@gmail.com>
Depends: R (>= 2.2.1), cgh, tilingArray, aCGH, cghMCR, GLAD, papply, GDD, waveslim, cluster, snapCGH, DNAcopy, Hmisc
Suggests: Rmpi
Description: Analysis and plotting of array CGH data. Allows usage of
Circular Binary Segementation, wavelet-based smoothing, ACE
method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and  Price's modification of Smith &
Waterman's algorith. Most computations are
parallelized. Figures are imagemaps with links to IDClight
(http://idclight.bioinfo.cnio.es).
LazyLoad: Yes
License: GPL version 2 or newer
URL: http://adacgh2.bioinfo.cnio.es, http://launchpad.net/adacgh
Packaged: Wed Apr 30 15:32:06 2008; ramon