Packaged: Tue Oct 28 14:43:23 2008; sinnwell

Title: Regression Methods for IBD Linkage With Covariates
Description: A method to test genetic linkage with covariates by
regression methods with response IBD sharing for relative
pairs.  Account for correlations of IBD statistics and
covariates for relative pairs within the same pedigree.

Maintainer: Jason P. Sinnwell <Sinnwell.Jason@mayo.edu>

Title: Regression Methods for IBD Linkage with Covariates
Description: Method to test genetic linkage with covariates by
Depends: R (>= 3.3.1), methods, stats, tools, graphics, utils

Authors@R: person("Magnus Dehli", "Vigeland", email = "m.d.vigeland@medisin.uio.no",
genome (Kong et al. (2010) <doi:10.1038/nature09525>), phased chromosomes
are simulated for all pedigree members. Additional features include calculation
of realised IBD coefficients and plots of IBD segment distributions.
Imports: Rcpp, ggplot2, glue, ribd (>= 1.1.0)

genome (Halldorsson et al. (2019) <doi:10.1126/science.aau1043>), phased chromosomes

pedigree members. Using sex specific recombination rates along the
<doi:10.1126/science.aau1043>), phased chromosomes are simulated for
all pedigree members. Applications include calculation of realised
relatedness coefficients and IBD segment distributions. 'ibdsim2' is
part of the 'ped suite' collection of packages for pedigree analysis.
A detailed presentation of the 'ped suite', including a separate
chapter on 'ibdsim2', is available in the book 'Pedigree analysis in
R' (Vigeland, 2021, ISBN:9780128244302). A 'shiny' app for visualising
and comparing IBD distributions is available at
Imports: ggplot2, glue, Rcpp, ribd (>= 1.1.0)

Imports: Rcpp, ggplot2, glue, ribd (>= 1.3.1)

Title: Irregular-lattice based ensemble empirical mode decomposition
Depends: R (>= 2.11.0), fields, deldir, rgeos, sp, spdep
Description: A data-driven and adaptive hierarchical-scale decomposition method for irregular-lattice field (represented by polygons).

Title: An R Package for Implementing Belief Functions
Author: Kuang Zhou <kzhoumath@163.com>; Arnaud Martin
Description: This package contains several basic functions to implement belief
Packaged: 2014-10-07 09:03:25 UTC; zhoukuang