of sources, including the 'Phylomatic' web service
Imports: crul (>= 0.4.0), curl (>= 1.2), ape, taxize, phytools,

Imports: crul (>= 0.4.0), curl, ape, taxize, phytools, phylocomr (>=

Imports: crul (>= 0.4.0), curl, ape, taxize (>= 0.9.97), phytools,

Author: Le Zheng[aut], Peng Yu[aut, cre]
Description: Analyses of large-scale -omics datasets commonly use p-values as the indicators of statistical significance. However, considering p-value alone neglects the importance of effect size (i.e., the mean difference between groups) in determining the biological relevance of a significant difference. Here, we present a novel algorithm for computing a new statistic, the biological relevance testing (BRT) index, in the frequentist hypothesis testing framework to address this problem.

Suggests: knitr, rmarkdown, reshape2, vsn, DESeq2, pasilla

Title: Broadly Useful Convenient and Efficient R Functions
Description: Broadly useful convenient and efficient R functions
that bring users concise and elegant R data analyses.
The package includes easy-to-use functions for
(4) multi-factor analysis of variance (ANOVA),
simple-effect analysis, and post-hoc multiple comparison;
and (5) advanced toolbox and tidy report of statistical models.
Imports: pacman, jmv, mediation, interactions, MuMIn, performance,
texreg, cowplot, see, glue, crayon, ggplot2
Suggests: rstudioapi, rio, dplyr, tidyr, stringr, forcats, data.table,
car, psych, afex, emmeans, effectsize, jtools, lavaan, lmtest,

Broadly useful convenient and efficient R functions
This package includes easy-to-use functions for
(e.g., set working directory to where the current file is,
print strings with rich formats and colors);
(e.g., compute scale sums/means/... with reverse scoring);
(4) descriptive statistics and correlation analyses;
(5) multi-factor analysis of variance (ANOVA),
(6) tidy report of regression models (to Console and to Word);
and (8) additional toolbox for statistics and graphics.
texreg, cowplot, see, glue, crayon, ggplot2, ggtext

(6) tidy report of regression models and other results
car, psych, afex, emmeans, effectsize, jtools, lavaan, lme4,
lmerTest, lmtest, vars, nnet, MASS, GGally