Title: Collection of Rudimentary Bioinformatics Tools
Description: Provides a bundle of basic and fundamental bioinformatics tools,
"wulingyun@gmail.com"), person("Qiang", "Huang", role = c("aut"), email =

such as network querying and alignment, subnetwork extraction and search.

such as network querying and alignment, subnetwork extraction and search,
"hq04405114@gmail.com"), person("Duanchen", "Sun", role = c("aut"), email =

Suggests: MASS, matrixcalc, knitr, rmarkdown

Suggests: knitr, rmarkdown, MASS, matrixcalc

Suggests: knitr, rmarkdown, BiocParallel, CRF, MASS, stats, matrixcalc,

Imports: Matrix, MASS, stats, CRF, igraph
Suggests: knitr, rmarkdown, BiocParallel, matrixcalc, mpmi,

Title: Classes and Functions to Serve as the Basis for Other 'Gx'
person("Petr","Smirnov", email = "petr.smirnov@uhnresearch.ca", role = c("aut")),
person("Ian","Smith", email = "ianc.smith@mail.utoronto.ca", role = c("aut")),
person("Christopher", "Eeles", , email = "christopher.eeles@uhnresearch.ca", role = c("aut")),
person("Benjamin", "Haibe-Kains",  email = "benjamin.haibe.kains@utoronto.ca", role = c("aut", "cre"))
Description: A collection of functions and classes which serve as the foundation
for our lab's suite of R packages, such as 'PharmacoGx' and 'RadioGx'. This
package was created to abstract shared functionality from other lab package
releases to increase ease of maintainability and reduce code repetition in
current and future 'Gx' suite programs. Major features include a 'CoreSet'
class, from which 'RadioSet' and 'PharmaSet' are derived, along with get and
set methods for each respective slot. Additional functions related to
fitting and plotting dose response curves, quantifying statistical
correlation and calculating area under the curve (AUC) or survival fraction
(SF) are included. For more details please see the included documentation,
Smirnov, P., Safikhani, Z., El-Hachem, N., Wang, D., She, A., Olsen, C.,
Freeman, M., Selby, H., Gendoo, D., Grossman, P., Beck, A., Aerts, H.,
Lupien, M., Goldenberg, A. (2015) <doi:10.1093/bioinformatics/btv723>.
Manem, V., Labie, M., Smirnov, P., Kofia, V., Freeman, M., Koritzinksy, M.,
Imports: lsa, methods, piano, Biobase, stats, rlang