Packaged: 2021-05-19 12:47:17 UTC; siberchicot

Depends: R (>= 3.5.0), MASS, grDevices, survival, methods
Packaged: 2021-09-28 10:38:11 UTC; siberchicot

Packaged: 2022-03-10 08:41:08 UTC; siberchicot

Title: Finite Mixture Model Fitting of Lifespan Datasets
Authors@R: c(person("Emine", "Guven", email = "emine.guven33@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9324-0879")),
Description: Fits the lifespan datasets of biological systems such as yeast, fruit flies, and other similar biological units with well-known finite mixture models introduced by Farewell V. (1982) <doi:10.2307/2529885> and Al-Hussaini et al. (2000) <doi:10.1080/00949650008812033>. Estimates parameter space fitting of a lifespan dataset with finite mixtures of parametric distributions. Computes the following tasks; 1) Estimates parameter space of the finite mixture model
by implementing the expectation maximization (EM) algorithm. 2) Finds a sequence of four goodness-of-fit measures consist of Akaike Information Criterion (AIC), Bayesian Information Criterion (BIC), Kolmogorov-Smirnov (KS), and log-likelihood (log-likelihood) statistics. 3)The initial values is determined by k-means clustering.
Author: Emine Guven [aut, cre] (<https://orcid.org/0000-0001-9324-0879>),

Title: Tools for Ordinary Differential Equations Model Fitting
Description: Methods and functions for fitting ordinary differential equations (ODE) model in 'R'. Sensitivity equations are used to compute the gradients of ODE trajectories with respect to underlying parameters, which in turn allows for more stable fitting. Other fitting methods, such as MCMC (Markov chain Monte Carlo), are also available.
Imports: deSolve, Deriv, MASS, numDeriv, mvtnorm, coda, methods
Suggests: knitr, ggplot2, testthat (>= 3.0.0)
Author: Sang Woo Park [aut, cre] (<https://orcid.org/0000-0003-2202-3361>),
Maintainer: Sang Woo Park <swp2@princeton.edu>

Title: Fit Hydraulic Vulnerability Curves
Description: Fits the Weibull equation to percent loss conductivity (plc) curves as a function of plant water potential, computes SE of parameter estimates and location of curve with bootstrap or parametric methods, and provides convenient plotting methods.