Title: Statistical Tools for the Analysis of Multi Environment
Description: Data from multi environment agronomic trials, which are often
carried out by plant breeders, can be analyzed with the tools offered by this
package such as the Additive Main effects and Multiplicative Interaction model
and the Site Regression model or 'SREG' ('Cornelius' 1996,
<doi:10.1201/9780367802226>). Since these methods present a poor performance
under the presence of outliers and missing values, this package includes
robust versions of the 'AMMI' model ('Rodrigues' 2016,
<doi:10.1093/bioinformatics/btv533>), and also imputation techniques
specifically developed for this kind of data ('Arciniegas-Alarcón' 2014,
Imports: stats, GGEBiplots, ggforce, ggplot2, scales, MASS, pcaMethods,
rrcov, dplyr, bcv, missMDA, calibrate, graphics, agridat,
Suggests: spelling, knitr, rmarkdown, testthat
Packaged: 2021-09-15 21:55:57 UTC; julia-fedora
Author: Julia Angelini [aut, cre] (<https://orcid.org/0000-0002-9611-527X>),

rrcov, dplyr, bcv, missMDA, calibrate, graphics, reshape2,
Suggests: agridat, spelling, knitr, rmarkdown, testthat
Packaged: 2021-12-20 15:39:30 UTC; julia-fedora
Author: Julia Angelini [aut, cre] (<https://orcid.org/0000-0002-5815-1771>),

Packaged: 2022-02-09 21:32:21 UTC; julia-fedora

rrcov, dplyr, missMDA, calibrate, graphics, reshape2,
Packaged: 2022-07-20 12:32:08 UTC; julia-fedora

Author: Gregory Warnes and Friedrich Leisch
Description: Classes and methods for handling genetic data. Includes
classes to represent genotypes and haplotypes at single markers up
to multiple markers on multiple chromosomes. Function include
allele frequencies, flagging homo/heterozygotes, flagging carriers
of certain alleles, computing disequlibrium, testing Hardy-Weinber

of certain alleles, computing disequilibrium, testing Hardy-Weinberg

Package: genetics
Title: Population Genetics
Version: 1.0.0
Date: 2003-05-28
Author: Gregory Warnes and Friedrich Leisch
Maintainer: Gregory Warnes <gregory_r_warnes@groton.pfizer.com>
Depends: combinat, gregmisc (>= 0.8.5), MASS
Description: Classes and methods for handling genetic data. Includes
classes to represent genotypes and haplotypes at single markers up
to multiple markers on multiple chromosomes. Function include
allele frequencies, flagging homo/heterozygotes, flagging carriers
of certain alleles, estimating and testing for Hardy-Weinberg
disequilibrium, estimating and testing for linkage disequilibrium,
...
License: GPL