gene products; Module detection among the gene set and
Depends: GOSim, SubpathwayMiner, dynamicTreeCut, moduleColor, RBGL,
Description: This package implements multiple similarity measures for
DO terms and gene products. It is aiming at disease analyis for
gene sets. Modules of a gene set could be detected and further
multilayer annoated on DO, GO and KEGG. We also provides users
to conduct DO enrichment analysis and basic information

Depends: R (>= 2.10), GOSim, SubpathwayMiner, dynamicTreeCut,
fetching for DO.DOSim: An R package for similarity between

Depends: R (>= 2.10), GOSim, dynamicTreeCut, moduleColor, RBGL, graph,

Title: Render and Export DOT Graphs in R
Maintainer: E. F. Haghish <haghish@imbi.uni-freiburg.de>
Description: Renders DOT diagram markup language in R and also provides the possibility to
export the graphs in PostScript and SVG (Scalable Vector Graphics) formats.
In addition, it supports literate programming packages such as 'knitr' and

Authors@R: c(person("Danyu", "Lin", role = "aut"),
person("Donglin", "Zeng", role = "aut"),
person("Shannon", "Holloway", role = c("aut", "cre"),
Description: Implements a nonparametric maximum likelihood method for evaluating the durability of vaccine efficacy in a randomized, placebo-controlled clinical trial with staggered enrollment of participants and potential crossover of placebo recipients. Lin, D. Y., Zeng, D., and Gilbert, P. B. (2021) <doi:10.1101/2021.01.13.21249779>.
Depends: methods, stats, graphics, survival
Collate: 'vcFit.R' 'vaccine.R' 'dove.R' 'doveData.R' 'plot.doveObj.R'

Description: Implements maximum likelihood methods for
evaluating the durability of vaccine efficacy in a randomized,
placebo-controlled clinical trial with staggered enrollment of participants
and potential crossover of placebo recipients before the end of the trial.
Lin, D. Y., Zeng, D., and Gilbert, P. B. (2021)
Lin, D. Y., Gu, Y., Zeng, D., Janes, H. E., and Gilbert, P. B. (2021)
Depends: R (>= 3.5.0), methods, survival
Imports: Rcpp (>= 1.0.4.6), stats, graphics
Collate: 'VEplot_type2.R' 'VEcal.R' 'postProcess.R' 'CoxReg.R'
'infBeta.R' 'postProcessDove.R' 'scores.R' 'loc.R' 'vcFit.R'
'verifyInputs.R' 'dove.R' 'dove2.R' 'doveData.R' 'iterations.R'