Packaged: 2020-10-19 19:00:14 UTC; zhanglixiang

Packaged: 2020-12-17 21:42:06 UTC; zhanglixiang

Title: Data Fusion using Optimal Transportation Theory
person(given = "Gregory" , family = "Guernec"     , role = c("aut","cre"), email = "otrecod.pkg@gmail.com"),
person(given = "Valerie" , family = "Gares"       , role = "aut", email = "otrecod.pkg@gmail.com"),
person(given = "Pierre"  , family = "Navaro"      , role = "ctb"),
person(given = "Jeremy"  , family = "Omer"        , role = "ctb"),
person(given = "Philippe", family = "Saint-Pierre", role = "ctb"),
person(given = "Nicolas" , family = "Savy"        , role = "ctb"))
Description: In the context of data fusion, the package provides a set of functions dedicated to the solving of 'recoding problems' using optimal transportation theory (Gares, Guernec, Savy (2019) <doi:10.1515/ijb-2018-0106> and Gares, Omer (2020) <doi:10.1080/01621459.2020.1775615>). From two databases with no overlapping part except a subset of shared variables, the functions of the package assist users until obtaining a unique synthetic database, where the missing information is fully completed.
Imports: stats, dplyr, mice, missMDA, plyr, FactoMineR, StatMatch,
proxy, rdist, ROI, ROI.plugin.glpk, ompr, ompr.roi, party, vcd

Title: Analysis of evolutionary rates in an OU framework
Author: Jeremy M. Beaulieu <jeremy.beaulieu@yale.edu>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy M. Beaulieu <jeremy.beaulieu@yale.edu>
Imports: ape, nloptr, numDeriv, SparseM, corpcor, lattice, akima,
Depends: ape, nloptr, numDeriv, SparseM, corpcor, lattice, akima,
Description: Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck-based Hansen models that allow the strength of selection and drift to vary across selective regimes.

Author: Jeremy M. Beaulieu <jeremy.beaulieu@yale.edu>, Brian O'Meara
Description: Calculates and compares rate differences of continuous
character evolution under Brownian motion and a new set of
Ornstein-Uhlenbeck-based Hansen models that allow the strength
of selection and drift to vary across selective regimes.