Title: Immune Cell Gene Signatures for Profiling the Microenvironment
Maintainer: Ajit Johnson Nirmal <ajitjohnson.n@gmail.com>
Description: Estimate the relative abundance of tissue-infiltrating immune subpopulations abundances using gene expression data.
Imports: HiClimR (>= 1.2), RColorBrewer (>= 1.1), igraph (>= 1.2),

Depends: R (>= 2.15.1), tcltk, extRemes (>= 2.0)
Description: This package provides a Graphical User Interface (GUI) to some of the functions in the package extRemes version >= 2.0.

Description: Graphical User Interface (GUI) to some of the functions in the package extRemes version >= 2.0 are included.

Title: Creation of in-Text Summary Table
Description: Creation of tables of summary statistics or counts for clinical data (for 'TLFs').
These tables can be exported as in-text table (with the 'flextable' package) for a Clinical Study Report
(Word format) or a 'topline' presentation (PowerPoint format),
or as interactive table (with the 'DT' package) to an html document for clinical data review.
Imports: clinUtils, cowplot, dplyr, flextable (>= 0.5.5), ggplot2,
ggrepel, magrittr, methods, officer, plyr, reshape2 (>= 1.4),
Suggests: htmltools, knitr, rmarkdown, pander, testthat, xml2
Packaged: 2021-06-09 12:48:15 UTC; lcougnaud

SystemRequirements: pandoc (to export an interactive summary table to a
Packaged: 2021-07-13 14:41:24 UTC; lcougnaud

person(given = "Margaux", family = "Faes",
Imports: clinUtils (>= 0.1.0), cowplot, flextable (>= 0.5.5), ggplot2,
Suggests: htmltools, knitr, rmarkdown, pander, testthat, xml2, tools,
Packaged: 2021-09-28 08:29:43 UTC; lcougnaud

Description: From a tree ensemble, extract, measure and prune rules; select a compact rule set; summarize rules into a learner; calculate frequent variable interactions.

Description: For tree ensembles such as random forests, regularized random forests and gradient boosted trees, this package provides functions for: extracting, measuring and pruning rules; selecting a compact rule set; summarizing rules into a learner; calculating frequent variable interactions; formatting rules in latex code.