X-CRAN-Comment: Orphaned and updated by the CRAN team on 2014-09-19 as
vignette locations were never updated for R 3.1.0.

Packaged: Thu Apr 14 18:17:43 2005; kjuen

Packaged: Thu Sep 29 14:26:10 2005; burger

Packaged: Mon Jan  9 13:04:04 2006; burger

Description: Automate downstream visualization & pathway analysis in RNAseq analysis. 'RVA' is a collection of functions that efficiently visualize RNAseq differential expression analysis result from summary statistics tables. It also utilize the Fisher's exact test to evaluate gene set or pathway enrichment in a convenient and efficient manner.
Imports: GSVAdata (>= 1.22.0), clusterProfiler (>= 3.14.3), data.table
ComplexHeatmap (>= 2.2.0), GSEABase (>= 1.48.0), circlize (>=
rWikiPathways (>= 1.6.1), stringr (>= 1.4.0), tibble, tidyr (>=
Author: Xingpeng Li [aut, cre] (<https://orcid.org/0000-0002-1331-1225>)

Imports: GSVAdata (>= 1.22.0), clusterProfiler (>= 3.15.1), data.table

Title: Diverse basic statistical and graphical functions
Depends: ade4, boot, doBy, lme4, statmod
Description: This package contains diverse more or less complicated
functions, written to simplify beginners' (but not only) life:
simplifications of existing functions, basic but not
implemented tests, easy-to-use tools... All functions are
presented in the French book 'Aide-memoire de statistique
appliquee a la biologie', written by the same author and

Imports: ade4, boot, car, doBy, lme4, MASS, statmod, survival

Imports: ade4, boot, car, doBy, lme4, MASS, mixOmics, statmod, survival
implemented tests, easy-to-use tools, bridges between functions
of different packages... All functions are presented in the
French book 'Aide-memoire de statistique appliquee a la
biologie', written by the same author and available on CRAN.

Imports: ade4, boot, car, lme4, MASS, mixOmics, statmod, survival
Description: This package contains diverse more or less complicated functions, written to simplify beginners' (but not only) life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.