Packaged: 2020-05-18 21:36:40 UTC; conniebrett

Packaged: 2020-08-04 00:35:31 UTC; conniebrett

Packaged: 2020-12-02 08:53:25 UTC; conniebrett

Packaged: 2021-03-22 17:07:20 UTC; conniebrett

Packaged: 2021-06-29 17:12:13 UTC; conniebrett

Title: Covariate Assisted Principal (CAP) Regression for Covariance
Description: Performs Covariate Assisted Principal (CAP) Regression for covariance matrix outcomes. The method identifies the optimal projection direction which maximizes the log-likelihood function of the log-linear heteroscedastic regression model in the projection space. See Zhao et al. (2018), Covariate Assisted Principal Regression for Covariance Matrix Outcomes, <doi:10.1101/425033> for details.

Title: Combined analysis of pleiotropy and epistasis
Author: Anna L. Tyler, Wei Lu, Justin J. Hendrick, Vivek M. Philip, and
Maintainer: Anna L. Tyler <anna.tyler@jax.org>
Description: This package combines complementary information across
multiple related phenotypes to infer directed epistatic
interactions between genetic markers. The analysis in this
package can be applied to a variety of engineered and natural
Depends: R (>= 2.15.2), corpcor, evd, qpcR, Matrix

Maintainer: Anna L. Tyler <Anna.Tyler@jax.org>
Depends: R (>= 2.15.2), corpcor, evd, qpcR, Matrix, igraph, fdrtool

Author: Anna L. Tyler, Wei Lu, Justin J. Hendrick, Vivek M. Philip, and Greg W. Carter
Description: This package combines complementary information across multiple related phenotypes to infer directed epistatic interactions between genetic markers. The analysis in this package can be applied to a variety of engineered and natural populations.
Imports: corpcor, evd, qpcR, Matrix, igraph, fdrtool

Imports: corpcor, evd, qpcR, Matrix, igraph, fdrtool, shape

Title: Combined Analysis of Pleiotropy and Epistasis
Author: Anna L. Tyler, Wei Lu, Justin J. Hendrick, Vivek M. Philip, and Greg W.
Description: Combines complementary information across multiple related
phenotypes to infer directed epistatic interactions between genetic markers.
This analysis can be applied to a variety of engineered and natural populations.
Imports: grDevices, graphics, stats, utils, corpcor, evd, qpcR, Matrix,
igraph, fdrtool, shape, parallel, doParallel, RColorBrewer,