Description: A set of R functions and data sets which implements Hotelling's T^2 test, and some variants of it. Functions are also included for Aitchison's additive log ratio and centred log ratio transformations

Title: Hotelling's T^2 Test and Variants
Description: A set of R functions which implements Hotelling's T^2 test and some variants of it. Functions are also included for Aitchison's additive log ratio and centred log ratio transformations.

Authors@R: c(person("James", "Curran", email = "j.curran@auckland.ac.nz",
person("Taylor", "Hersh", email = "taylor.hersh@dal.ca",

Title: Hotelling T-Square and Confidence Ellipse
Description: Functions to compute the semi-axes lengths and coordinate points of Hotelling ellipse. Bro and Smilde (2014) <DOI:10.1039/c3ay41907j>. Brereton (2016) <DOI:10.1002/cem.2763>.
Imports: dplyr, FactoMineR, ggforce, ggplot2, lifecycle, magrittr,
Suggests: rmarkdown, knitr, markdown, testthat (>= 3.0.0), spelling
Packaged: 2021-05-17 16:13:58 UTC; christiangoueguel
Author: Christian L. Goueguel [aut, cre]
Maintainer: Christian L. Goueguel <christian.goueguel@gmail.com>

Suggests: rmarkdown, knitr, markdown, testthat (>= 3.0.0), spelling,
Packaged: 2022-06-24 19:41:11 UTC; christiangoueguel

Title: HumMeth27QCReport: quality control and preprocessing of
Illumina's Infinium HumanMethylation27 BeadChip methylation
Description: HumMeth27QCReport is a tool for quality control and
preprocessing of Illumina's Infinium HumanMethylation27
BeadChip methylation assay. The automated analysis pipeline
comprises data import, normalization, quality diagnostics and
Depends: methylumi, amap, Hmisc, gplots, plotrix, WriteXLS, tcltk
biocViews: DNAMethylation, TwoChannel, QualityControl, Preprocessing,

Depends: methylumi, lumi, amap, Hmisc, gplots, plotrix, WriteXLS, tcltk

preprocessing of Illumina's Infinium BeadChip methylation
assays. The automated analysis pipeline comprises data import,
normalization, quality diagnostics and data export.
Depends: R (>= 2.13.0), methylumi, lumi,
IlluminaHumanMethylation450k.db, amap, Hmisc, gplots, plotrix,
Imports: AnnotationDbi (>= 0.0.89), Biobase (>= 1.15.29)