Title: Do 16s Data Analysis and Generate Figures
Description: Provides functions to enhance the available
statistical analysis procedures in R by providing simple functions to
analysis and visualize the 16S rRNA data.Here we present a tutorial
with minimum working examples to demonstrate usage and dependencies.
Imports: dplyr, plyr, magrittr, broom, phyloseq, vegan, rlang, tools,
ggplot2, ggpubr, DESeq2, dada2, SummarizedExperiment,
S4Vectors, Biostrings, rstatix, tidyr, DECIPHER, phangorn,

Imports: dplyr, plyr, magrittr, broom, phyloseq, vegan, rlang, ggplot2,
ggpubr, DESeq2, dada2, SummarizedExperiment, S4Vectors,
Biostrings, rstatix, tidyr, DECIPHER, phangorn, MASS,

ggpubr, DESeq2, SummarizedExperiment, S4Vectors, rstatix,
tidyr, phangorn, randomForest, edgeR, testthat

Title: Methods for Taxonomic Classification of Prokaryotes
Author: Kristian Hovde Liland, Hilde Vinje, Lars Snipen
Description: Functions for assigning 16S sequence data to a
taxonomic level in the tree-of-life for prokaryotes.
Depends: R (>= 3.0.2), microseq, microcontax
LinkingTo: Rcpp (>= 0.11.1), RcppEigen, RcppParallel
Packaged: 2016-09-07 20:34:30 UTC; kristian.liland

LinkingTo: Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, RcppParallel,

Depends: R (>= 3.5.0), microseq, microcontax, dplyr, stringr, rlang
Imports: Rcpp (>= 0.11.1), RcppParallel, tibble

Title: Entity Resolution with Random Partition Priors for
person(given=c("Rebecca", "C"), family="Steorts", role = c("aut","cre"), email="beka@stat.duke.edu"),
person("Brenda", "Betancourt", email = "bbetancourt@ufl.edu", role = c("aut")),
person("Giacomo", "Zanella", email = "zanella.gcm@gmail.com", role = c("aut"))
Description: An implementation of the model in Betancourt, Zanella, Steorts (2020) <arXiv:2004.02008>, which performs microclustering models for categorical data. The package provides a vignette for two proposed methods in the paper as well as two standard Bayesian non-parametric clustering approaches for entity resolution. The experiments are reproducible and illustrated using a simple vignette. LICENSE: GPL-3 + file license.
Packaged: 2020-09-28 15:10:13 UTC; rebeccasteorts
Maintainer: Rebecca C Steorts <beka@stat.duke.edu>