Authors@R: c(person("Juliane", "Manitz", email="r@manitz.org", role=c("aut", "cre")), person("Jonas", "Harbering", email="", role=c("ctb")), person("Jun", "Li", email="", role=c("ctb")))
Imports: igraph, Hmisc, colorspace, mvtnorm, corpcor

Description: Performs network-based source estimation. Different approaches are available: effective distance median (Manitz et al., 2014; <doi:10.1371/currents.outbreaks.f3fdeb08c5b9de7c09ed9cbcef5f01f2>), recursive backtracking (Manitz et al., 2016; <doi:10.1111/rssc.12176>), and centrality-based source estimation (Li et al., 2021; <doi:10.1371/journal.pcbi.1008545>). Additionally, we provide public transportation network data as well as methods for data preparation, source estimation performance analysis and visualization.
Imports: igraph, Hmisc, colorspace, mvtnorm, corpcor, plyr

Title: NetPreProc: Network Pre-Processing and normalization.
Author: Giorgio Valentini, Matteo Re -- Universita' degli Studi di
Description: Package for the pre-processing and normalization of graphs

Title: Network Pre-Processing and Normalization
Author: Giorgio Valentini, Matteo Re -- Universita' degli Studi di Milano
Description: Package for the pre-processing and normalization of graphs.

Authors@R: c(person("Giorgio", "Valentini", role = c("aut", "cre"),
Description: Network Pre-Processing and normalization. Methods for normalizing graphs, including Chua normalization, Laplacian normalization, Binary magnification, min-max normalization and others. Methods to sparsify adjacency matrices. Methods for graph pre-processing and for filtering edges of the graph.

Title: Permutation Testing Network Module Preservation Across Datasets
Description: Functions for assessing the replication/preservation of a network
module's topology across datasets through permutation testing.
Imports: foreach, Rcpp (>= 0.11), statmod, RhpcBLASctl, abind,
RColorBrewer, utils, stats, graphics, grDevices, ref
Suggests: bigmemory, testthat, knitr, rmarkdown
LinkingTo: Rcpp, BH, RcppArmadillo (>= 0.4)
SystemRequirements: A compiler with C++11 support for the thread
library, Requires Rtools >= 33 (i.e. R >= 3.3.0) to build on