for computing variable inclusion probabilities, multiple regression coefficients, and
Imports: Rcpp (>= 1.0.4.6), Rdpack (>= 0.11-1), reshape, ggplot2 (>=

Title: Gaussian Graphical Models with Nonconvex Regularization
Description: Estimate Gaussian graphical models with nonconvex penalties <doi:10.31234/osf.io/ad57p>,

Imports: Rcpp (>= 1.0.4.6), Rdpack (>= 0.11-1), reshape, GGally (>=
7.3-51.5), methods, parallel, pbapply, sna (>= 2.5), stats,
Suggests: car, corpcor, corrplot, dplyr, NetworkToolbox,

Title: Non-Regularized Gaussian Graphical Models
Description: Estimate non-regularized Gaussian graphical models, Ising models,
and mixed graphical models. The current methods consist of multiple regression,
a non-parametric bootstrap  <doi:10.1080/00273171.2019.1575716>, and Fisher z
transformed partial correlations <doi:10.1111/bmsp.12173>. Parameter uncertainty,
predictability, and network replicability <doi:10.31234/osf.io/fb4sa> are also implemented.
Imports: Rdpack, bestglm, GGally, network, sna, Matrix, poibin,
parallel, doParallel, foreach, corpcor, psych, MASS, stats,

Title: Gaussian Graphical Models Using Ridge Penalty Followed by
Author: Min Jin Ha [aut, cre], Shannon Holloway [ctb]
Depends: mvtnorm, MASS, stats, graphics, methods
Description: Estimation of partial correlation matrix using ridge penalty followed by thresholding and reestimation. Under multivariate Gaussian assumption, the matrix constitutes an Gaussian graphical model (GGM).

Author: Min Jin Ha [aut, cre], Shannon T. Holloway [ctb]
Description: Estimation of partial correlation matrix using ridge penalty
followed by thresholding and reestimation. Under multivariate Gaussian
assumption, the matrix constitutes an Gaussian graphical model (GGM).

Author: Annie Bouvier, Christophe Giraud, Sylvie Huet, Verzelen N.
Description: GGMselect is a package dedicated to graph estimation in
Gaussian Graphical Models. The main functions return the
adjacency matrix of an undirected graph estimated from a data
Depends: mvtnorm, lars, mvbutils (>= 2.0), gtools
Packaged: Thu Sep 3 08:56:42 2009; abouvier