Description: Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Packaged: 2018-01-29 11:32:47 UTC; isubirana

Suggests: tcltk2, shiny, shinyBS, shinyjs, DT, xlsx, formatR
Author: Isaac Subirana, Joan Vila, Hector Sanz, Gavin Lucas, Judith Penafiel and David Gimenez

Packaged: 2018-05-18 12:18:02 UTC; isubirana

Suggests: tcltk2, shiny, shinyBS, shinyjs, DT, xlsx
Packaged: 2018-11-02 13:08:18 UTC; isubirana

kableExtra, methods, chron, stats, writexl
Suggests: tcltk2, shiny, shinyBS, shinyjs, shinyjqui, shinythemes,
Packaged: 2019-05-27 09:09:07 UTC; isubirana

kableExtra, methods, chron, stats, writexl, flextable, officer
person("Isaac", "Subirana", email ="isubirana@imim.es", role = c("aut", "cre"),
person("Joan", "Salvador", email ="jvila@imim.es", role = c("ctb")
Packaged: 2019-09-19 07:48:46 UTC; isubirana
Author: Isaac Subirana [aut, cre] (<https://orcid.org/0000-0003-1676-0197>),

Imports: survival, tools, HardyWeinberg, rmarkdown, knitr, kableExtra,
methods, chron, stats, writexl, flextable, officer

shinyWidgets, shinydashboardPlus, DT, readxl, haven

shinyWidgets, shinydashboardPlus, DT, readxl, haven, SNPassoc

Packaged: 2022-11-18 12:19:05 UTC; isubirana

Title: Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines
Maintainer: Perry de Valpine <pdevalpine@berkeley.edu>
person("Perry", "de Valpine", , "pdevalpine@berkeley.edu", role = c("aut", "cre")),
person("Sally", "Paganin", role = "aut"),
person("Daniel", "Turek", role = "aut"),
person("Christopher", "Paciorek", role = "aut")
Description: Manages comparison of MCMC performance metrics from multiple MCMC algorithms. These may come from different MCMC configurations using the 'nimble' package or from other packages. Plug-ins for JAGS via 'rjags' and Stan via 'rstan' are provided. It is possible to write plug-ins for other packages. Performance metrics are held in an MCMCresult class along with samples and timing data. It is easy to apply new performance metrics. Reports are generated as html pages with figures comparing sets of runs. It is possible to configure the html pages, including providing new figure components.
License: BSD_3_clause + file LICENSE | GPL (>= 2)
Imports: R6, ggplot2, grid, reshape2, xtable, coda
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, rjags, rstan