Title: Kaplan-Meier Simultaneous Confidence Band for the Survivor
Author: David E. Matthews <dematthews@uwaterloo.ca>
Maintainer: David E. Matthews <dematthews@uwaterloo.ca>
Description: Computes and plots an exact nonparametric band for any user-specified level of confidence from a single-sample survfit object
Depends: R (>= 2.14.0), graphics, survival
Packaged: 2013-10-25 13:24:36 UTC; Operating

Title: 'Yinyang' K-Means and K-NN using NVIDIA CUDA
Author: Vadim Markovtsev, Charles Determan
Description: K-means implementation is based on "Yinyang K-Means: A Drop-In Replacement of
the Classic K-Means with Consistent Speedup". While it introduces some overhead and many
conditional clauses which are bad for CUDA, it still shows 1.6-2x speedup against the Lloyd
algorithm. K-nearest neighbors employ the same triangle inequality idea and require
precalculated centroids and cluster assignments, similar to the flattened ball tree.
SystemRequirements: CUDA 8.0 tookit, OpenMP 4.0 capable compiler
Packaged: 2017-05-03 12:50:32 UTC; cdeterman

Title: 'Yingyang' K-Means and K-NN using NVIDIA CUDA
Description: K-means implementation is base on "Yingyang K-Means: A Drop-In Replacement of the Classic K-Means with Consistent Speedup". While it introduces some overhead and many conditional clauses which are bad for CUDA, it still shows 1.6-2x speedup against the Lloyd algorithm.  K-nearest neighbors employ the same triangle inequality idea and require precalculated centroids and cluster assignments, similar to the flattened ball tree.
License: Apache License (>= 2.0) | file LICENSE

Authors@R: person("Rafal", "Urniaz", comment = c(ORCID = "0000-0003-0192-2165"), email = "rafal.urniaz@gmail.com", role = c("aut", "cre"))
Description: Contains tools to calculate similarity score matrix for DNA k-mers. The pairwise
similarity score is calculated using PAM or BLOSUM substitution matrix. The
results are evaluated by similarity score calculated by Needleman-Wunsch
score indicates more similar sequences for BLOSUM and less similar sequences
versions are available for PAM and BLOSUM, respectively.
Imports: tcR, rDNAse, utils, stats, Biostrings
Suggests: knitr, ape (>= 4.0), rmarkdown
Author: Rafal Urniaz [aut, cre] (<https://orcid.org/0000-0003-0192-2165>)