Package: multtest
Title: Resampling-based multiple hypothesis testing
Version: 1.16.1
Author: Katherine S. Pollard, Yongchao Ge, Sandra Taylor, Sandrine Dudoit
Description: Non-parametric bootstrap and permutation resampling-based
multiple testing procedures for controlling the family-wise
error rate (FWER), generalized family-wise error rate (gFWER),
tail probability of the proportion of false positives (TPPFP),
and false discovery rate (FDR). Single-step and step-wise
methods are implemented. Tests based on a variety of t- and
F-statistics (including t-statistics based on regression
parameters from linear and survival models) are included.
Results are reported in terms of adjusted p-values,
confindence regions and test statistic cutoffs. The procedures
are directly applicable to identifying differentially
expressed genes in DNA microarray experiments.
Maintainer: Katherine S. Pollard <kpollard@wald.ucdavis.edu>
Depends: R (>= 2.1.0), methods, Biobase, survival
Enhances: snow, Rmpi, rpvm
License: LGPL
biocViews: Microarray, DifferentialExpression, MultipleComparisons
LazyLoad:yes
Packaged: Mon Jul 16 03:59:55 2007; kpollard

Package: multtest
Title: Resampling-based multiple hypothesis testing
Version: 1.21.1
Author: Katherine S. Pollard, Yongchao Ge, Sandra Taylor, Sandrine Dudoit
Description: Non-parametric bootstrap and permutation resampling-based
multiple testing procedures for controlling the family-wise
error rate (FWER), generalized family-wise error rate (gFWER),
tail probability of the proportion of false positives (TPPFP),
and false discovery rate (FDR). Single-step and step-wise
methods are implemented. Tests based on a variety of t- and
F-statistics (including t-statistics based on regression
parameters from linear and survival models) are included.
Results are reported in terms of adjusted p-values,
confindence regions and test statistic cutoffs. The procedures
are directly applicable to identifying differentially
expressed genes in DNA microarray experiments.
Maintainer: Katherine S. Pollard <kpollard@gladstone.ucsf.edu>
Depends: R (>= 2.1.0), methods, Biobase, survival
Enhances: snow, Rmpi, rpvm
License: LGPL
biocViews: Microarray, DifferentialExpression, MultipleComparisons
LazyLoad:yes
Packaged: Fri Aug 15 13:40:31 2008; biocbuild