Imports: spatstat (>= 1.37-0), sp, raster, tcltk, RandomFields,

Imports: spatstat (>= 1.50-0), spatstat.utils, sp, raster, tcltk,
RandomFields, iterators, ncdf4, methods, rpanel (>= 1.1-3),

Diggle. Additional code contributions from Edzer Pebesma, Dominic Schumacher.

multivariate and aggregated point processes using Markov chain Monte Carlo. See Benjamin M. Taylor, Tilman M. Davies, Barry S. Rowlingson, Peter J. Diggle (2015) <doi:10.18637/jss.v063.i07>.

Imports: spatstat.geom, spatstat.core, spatstat (>= 2.0-0),
spatstat.utils, sp, raster, tcltk, RandomFields, iterators,
ncdf4, methods, rpanel (>= 1.1-3), fields, maptools, Matrix,

Imports: spatstat.geom, spatstat.explore, spatstat.utils, sp, raster,
tcltk, iterators, ncdf4, methods, rpanel (>= 1.1-3), fields,

Imports: spatstat.geom, spatstat.core, spatstat.utils, sp, raster,

Description: For high-dimensional correlated observations, this package carries out the L_1 penalized maximum likelihood
estimation of the precision matrix (network) and the correlation parameters. The correlated data can be
longitudinal data (may be irregularly spaced) with dampening correlation or clustered data with uniform correlation.
For the details of the algorithms, please see the paper Jie Zhou et al. Identifying Microbial Interaction Networks Based on Irregularly Spaced
Longitudinal 16S rRNA sequence data <doi:10.1101/2021.11.26.470159>.
Authors@R: c(person("Jie", "Zhou", role = c("aut", "cre","cph"),

Title: Longitudinal Gaussian Process Regression
Description: Interpretable nonparametric modeling of longitudinal data
using additive Gaussian process regression. Contains functionality
for inferring covariate effects and assessing covariate relevances.
Models are specified using a convenient formula syntax, and can include
shared, group-specific, non-stationary, heterogeneous and temporally
uncertain effects. Bayesian inference for model parameters is performed
using Stan. The modeling approach and methods are described in detail in
Timonen et al. (2021) <doi:10.1093/bioinformatics/btab021>.
RcppParallel (>= 5.0.2), rstan (>= 2.21.2), StanHeaders (>=
Packaged: 2021-06-19 10:48:33 UTC; juhotimonen
Author: Juho Timonen [aut, cre] (<https://orcid.org/0000-0003-2341-6765>)