Title: Estimate and Account for Tumor Purity in Cancer Methylation Data
Description: The proportion of cancer cells in solid tumor sample, known as the tumor purity, has adverse impact on a variety of data analyses if not properly accounted for. We develop 'InfiniumPurify', which is a comprehensive R package for estimating and accounting for tumor purity based on DNA methylation Infinium 450k array data. 'InfiniumPurify' provides functionalities for tumor purity estimation. In addition, it can perform differential methylation detection and tumor sample clustering with the consideration of tumor purities.

person("Daiane", "Marcolino", email = "daiane.marcolino@fgv.br", role = "aut"),
Description: Provides access to core inflation functions. Four different core inflation
functions are provided. The well known trimmed means, exclusion and double weighing methods,
alongside the new Triple Filter method introduced in Ferreira et al. (2016) <https://goo.gl/UYLhcj>.
Packaged: 2017-08-31 18:06:09 UTC; fernando.teixeira

Title: Melt Curve Fitting and Melt Shift Analysis
Authors@R: c(person("Neil", "McCracken", email = "namccrac@iu.edu",role = c("aut")),
person("Aruna", "Wijeratne", role = c("ctb")),
person("Amber", "Mosley", email = "almosley@iu.edu",role = c("cre")))
Description: This program analyzes raw abundance data from a cellular thermal shift experiment and calculates melt temperatures and melt shifts for each protein in the experiment. Reference to software development can be found at <doi:10.1101/2020.10.31.363523>.
Imports: readxl, writexl, optimr, data.table, plotrix, tidyr, ggplot2

Description: This program analyzes raw abundance data from a cellular thermal shift experiment and calculates melt temperatures and melt shifts for each protein in the experiment. Reference to software development can be found at <doi:10.1021/acs.jproteome.0c00872>.
Imports: readxl, writexl, optimr, data.table, plotrix, tidyr, ggplot2,

Description: Analyzes raw abundance data from a cellular thermal shift experiment and calculates melt temperatures and melt shifts for each protein in the experiment.
Imports: readxl, data.table, plotrix, tidyr, ggplot2, xlsx, httr,
jsonlite, GGally, network, stats, RColorBrewer, svglite