Author: Vincent Goulet, Christophe Dutang, Martin Maechler,
David Firth, Marina Shapira, Michael Stadelmann,
Description: Computation of the matrix exponential and related quantities.

Description: Computation of the matrix exponential, logarithm, and related quantities.

David Firth, Marina Shapira, Michael Stadelmann

Description: Computation of the matrix exponential, logarithm, sqrt,

and related quantities, using traditional and modern methods.

Authors@R: c(person("Roger B.", "Sidje", email =
"roger.b.sidje@ua.edu", role = c("aut", "cph")), person("Niels
Richard", "Hansen", email = "Niels.R.Hansen@math.ku.dk", role =
Maintainer: Niels Richard Hansen <Niels.R.Hansen@math.ku.dk>
Description: An R-interface to the Fortran package Expokit.
Collate: 'expoRkit.R' 'expv.R' 'expoRkit-package.R' 'data.R'

Authors@R: c(person("Roger B.", "Sidje", email = "roger.b.sidje@ua.edu",

Author: Roger B. Sidje [aut, cph], Niels Richard Hansen [aut, cre, cph]

Title: Calculate density dependent likelihood of a phylogenetic tree
Author: Gabriel E Leventhal, partly adapted from MATLAB code by Awad H.
Al-Mohy and using the routines DLNAC1 and DLARPC by Sheung Hun
Maintainer: Gabriel E Leventhal <gabriel@leventhal.ch>
Description: Calculates the density dependent likelihood of a
phylogenetic tree. It takes branching and sampling times as an
argument and integrates the likelihood function over the whole

Author: Gabriel E Leventhal, partly adapted from MATLAB code by Awad H. Al-Mohy and using the routines DLNAC1 and DLARPC by Sheung Hun Cheng, and DLAPST from ScaLAPACK.
Depends: R (>= 2.12.0), ape, pso, deSolve
Description: Calculates the density dependent likelihood of a phylogenetic tree. It takes branching and sampling times as an argument and integrates the likelihood function over the whole tree.

Title: Streamlined Export of Graphs and Data Tables
Authors@R: c(person("Tom", "Wenseleers", role = c("aut", "cre"),
person("Christophe", "Vanderaa", role = c("aut"),
Imports: stats, utils, datasets, grDevices, officer (>= 0.2.2), rvg (>=
Description: Easily export 'R' graphs and statistical output to 'Microsoft
Office' / 'LibreOffice', 'Latex' and 'HTML' Documents, using sensible defaults
that result in publication-quality output with simple, straightforward commands.
Output to 'Microsoft Office' is in editable 'DrawingML' vector format for
graphs, and can use corporate template documents for styling. This enables
the production of standardized reports and also allows for manual tidy-up
of the layout of 'R' graphs in 'Powerpoint' before final publication. Export
of graphs is flexible, and functions enable the currently showing R graph
or the currently showing 'R' stats object to be exported, but also allow the
graphical or tabular output to be passed as objects. The package relies on package
'officer' for export to 'Office' documents,and output files are also fully compatible
with 'LibreOffice'. Base 'R', 'ggplot2' and 'lattice' plots are supported, as
well as a wide variety of 'R' stats objects, via wrappers to xtable(), broom::tidy()
and stargazer(), including aov(), lm(), glm(), lme(), glmnet() and coxph() as
well as matrices and data frames and many more...