Description: Provides basic distribution functions for a generalized logistic distribution proposed by Rathie and Swamee (2006) <https://www.rroij.com/open-access/on-new-generalized-logistic-distributions-and-applicationsbarreto-fhs-mota-jma-and-rathie-pn-.pdf>. It also has an interactive 'RStudio' plot for better guessing dynamically of initial values for ease of included optimization and simulating.
Imports: distr, manipulate, doParallel, parallel, tcltk

Title: Finding the DNA and Protein Sequences of Any Genomic or
biocViews: Genetics, Proteomics, Sequencing, Annotation,
Description: Using the DNA sequence and gene annotation files provided in
the functions implemented in the package try to find the DNA sequences and
protein sequences of any given genomic loci, and to find the genomic coordinates
and protein sequences of any given protein locations, which are the frequent
tasks in the analysis of genomic and proteomic data.
Imports: S4Vectors, BiocGenerics, GenomicRanges, IRanges, R.utils,
Packaged: 2017-12-12 14:56:10 UTC; yaoyongli

Packaged: 2018-01-23 13:46:41 UTC; yaoyongli

Packaged: 2018-01-24 12:07:01 UTC; yaoyongli

Title: Plot publication-grade gene and genome maps
Depends: R (>= 2.10.0), methods, grid, ade4
Description: genoPlotR draws gene or genome maps and comparisons
between these, in a publication-grade manner. Starting from
simple, common files, it will draw postscript or pdf files that

Title: Plot Publication-Grade Gene and Genome Maps
Description: Draws gene or genome maps and comparisons between these, in a
publication-grade manner. Starting from simple, common files, it will
draw postscript or PDF files that can be sent as such to journals.

Description: genoPlotR draws gene or genome maps and comparisons between
these, in a publication-grade manner. Starting from simple, common files,
it will draw postscript or pdf files that can be sent as such to journals

draw postscript or pdf files that can be sent as such to journals.

Calculates Agresti's (1980) <https://www.jstor.org/stable/2530495> generalized odds ratios.
For a randomly selected pair of observations
from two groups, calculates the odds that
the second group will have a higher scoring outcome
Package provides hypothesis testing for if this odds
ratio is significantly different to 1 (equal chance).
Author: Hannah Johns [aut, cre] (<https://orcid.org/0000-0003-2135-0504>)