Description: Designed for the cleaning, contextualization and assessment of cytochrome c oxidase I DNA barcode data (COI-5P, or the five prime portion of COI).

Description: Designed for the cleaning, contextualization and assessment of cytochrome c
oxidase I DNA barcode data (COI-5P, or the five prime portion of COI). It contains
functions for placing COI-5P barcode sequences into a common reading frame,
translating DNA sequences to amino acids and for assessing the likelihood that a
given barcode sequence includes an insertion or deletion error. The error assessment
relies on the comparison of input sequences against nucleotide and amino acid profile
hidden Markov models (PHMMs) (for details see Durbin et al. 1998, ISBN: 9780521629713)
trained on a taxonomically diverse set of reference sequences. The functions are
provided as a complete pipeline and are also available individually for efficient and

Title: Conditional Inference Procedures in a Permutation Test Framework
Author: Torsten Hothorn and Kurt Hornik, with contributions by
Description: Conditional inference procedures for the general independence
problem including two-sample, K-sample, correlation, censored, ordered and
Depends: R (>= 2.0.0), methods, survival, mvtnorm
Packaged: Wed May  4 11:38:13 2005; hothorn

Packaged: Thu Jun  2 16:56:12 2005; hothorn

Depends: R (>= 2.0.0), methods, survival, mvtnorm, modeltools
Packaged: Wed Jun 15 10:04:01 2005; hothorn

Packaged: Fri Jul  8 19:01:13 2005; hothorn

Packaged: Mon Jul 25 13:41:38 2005; hothorn

Packaged: Fri Feb 25 17:06:43 2005; hothorn

Packaged: Tue Mar  1 17:46:43 2005; hothorn

Packaged: Mon Mar 14 17:53:18 2005; hothorn

Packaged: Thu Aug 18 10:03:36 2005; hothorn

Packaged: Tue Aug 30 14:19:07 2005; hothorn

Packaged: Tue Sep  6 23:45:33 2005; hothorn

Packaged: Thu Nov 17 15:36:47 2005; hothorn

Packaged: Wed Nov 23 09:56:43 2005; hothorn

Packaged: Tue Nov 29 11:31:35 2005; hothorn

Depends: R (>= 2.2.0), methods, survival, mvtnorm, modeltools
Packaged: Fri Dec  2 11:02:10 2005; hothorn