Suggests: Biobase, xtable, knitr, Umpire

Title: Clopper-Pearson Confidence Interval and Generalized Binomial
Description: Density, distribution function, quantile function and random generation for the Generalized Binomial Distribution. Functions to compute the Clopper-Pearson Confidence Interval and the required sample size. Enhanced model for burn-in studies, where failures are tackled by countermeasures.

Packaged: 2014-06-15 08:21:57 UTC; David Lenzi

Title: Genetic Class Association Testing (GenCAT)
Author: Eric Reed, Sara Nu<c3><b1>ez, Jing Qian, Andrea Foulkes
Description: Implementation of the genetic class level association testing (GenCAT) method from SNP level association data. Refer to: "Qian, J., Reed, E., Nunez, S., Qu, L., Reilly, M., Foulkes, A. (2015) Testing class-level genetic associations using single-element summary statistics. (Under review).".
Depends: R (>= 2.10), stats, dplyr, doParallel, ggplot2, foreach,

Title: Genetic Class Association Testing
Author: Eric Reed, Sara Nunez, Jing Qian, Andrea Foulkes
Description: Implementation of the genetic class level association testing (GenCAT) method from SNP level association data. Refer to: "Qian, J., Reed, E., Nunez, S., Qu, L., Reilly, M., Foulkes, A. (2016) Testing class-level genetic associations using single-element summary statistics. (Under review).".

Description: Implementation of the genetic class level association testing (GenCAT) method from SNP level association data. Refer to: "Qian J, Nunez S, Reed E, Reilly MP, Foulkes AS (2016) <DOI:10.1371/journal.pone.0148218> A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci. PLoS ONE 11(2): e0148218".

person("Daniel", "Dalthorp", , "ddalthorp@usgs.gov", c("aut", "cre")),
person("Juniper", "Simonis", , "simonis@dapperstats.com", "aut"),
person("Lisa", "Madsen", , "madsenl@oregonstate.edu", "aut"),
person("Manuela", "Huso", , "mhuso@usgs.gov", "aut"),
person("Paul", "Rabie", , "prabie@west-inc.com", "aut"),
person("Jeffrey", "Mintz", , "mintzj@oregonstate.edu", "aut"),
person("Robert", "Wolpert", , "wolpert@stat.duke.edu", "aut"),
person("Jared", "Studyvin", , "jstudyvin@west-inc.com", "aut"),
person("Franzi", "Korner-Nievergelt", , "fraenzi.korner@oikostat.ch", "aut"))
Description: Command-line and 'shiny' GUI implementation of the GenEst models for estimating bird and bat mortality at wind and solar power facilities, following Dalthorp, et al. (2018) <https://pubs.usgs.gov/tm/7a2/tm7a2.pdf>.
Imports: cbinom (>= 1.3), corpus, DT, gsl, gtools, htmltools,
lubridate, matrixStats, mvtnorm, Rcpp, shiny, shinyjs, sticky,
Packaged: 2018-11-14 15:01:19 UTC; ddalthorp