Author: Markus Goeker, with contributions by Lea A.I. Vaas, Johannes
Imports: methods, lattice, boot, hwriter, plotrix
Collate: 'well-map.R' 'constants.R' 'numeric.R' 'helpers.R' 'wmd.R'

Suggests: yaml (>= 2.1.3), multicore, optparse, gplots, Ckmeans.1d.dp
Collate: 'substrate-info.R' 'well-map.R' 'constants.R' 'classes.R'
'auxiliary.R' 'kmeans.R' 'naming.R' 'metadata.R' 'getter.R'

Imports: methods, lattice, boot, hwriter, plotrix, pkgutils,
Suggests: yaml (>= 2.1.3), multicore, optparse, gplots, opmdata
'discretization.R' 'plotting.R' 'io.R' 'phylogeny.R' 'data.R'

Author: Markus Goeker, with contributions by Lea A.I. Vaas, Benjamin
Hofner, Johannes Sikorski, Nora Buddruhs and Anne Fiebig
Imports: methods, lattice, boot, hwriter, plotrix, pkgutils (>= 0.3-0),
Suggests: multicore, optparse, gplots, opmdata (>= 0.4-0), testthat
BiOLOG Inc., including plotting, aggregating (estimating curve
integrating metadata, using the YAML format for the storage of
data and metadata, and batch conversion of large numbers of

Ckmeans.1d.dp, pkgutils (>= 0.3-0), yaml (>= 2.1.5), splines,

Ckmeans.1d.dp, pkgutils (>= 0.5-0), yaml (>= 2.1.7), splines,
Suggests: optparse, gplots, opmdata (>= 0.4-0), testthat, multcomp,
Description: Tools for analysing OmniLog(R) and MicroStation(TM)
phenotype microarray (PM) data as produced by the devices
distributed by BIOLOG Inc., including plotting, aggregating
(estimating curve parameters), comparing and discretising PM
data, creating phylogenetic formats and reports for taxonomic
journals, drawing the PM analysis results in biochemical
pathway graphs optionally including genome annotations, running
multiple comparisons of means, integrating metadata, using the
YAML format for the storage of data and metadata, and batch

Title: Analysing Phenotype Microarray and Growth Curve Data
Ckmeans.1d.dp, pkgutils (>= 0.6.0), yaml (>= 2.1.7), splines,
mgcv, grofit (>= 1.1), rjson (>= 0.2.12), nlme, DBI
Suggests: optparse, gplots, opmdata (>= 0.4.0), testthat, multcomp,
KEGGREST, pathview, mboostDevel (>= 2.3.0), gridExtra
distributed by BIOLOG Inc. as well as similar kinds of data
such as growth curves. Major facilities are plotting data,
accurately estimating curve parameters, comparing and
discretising data, creating phylogenetic formats and reports
for taxonomic journals, drawing the PM analysis results in
biochemical pathway graphs optionally including genome
annotations, running multiple comparisons of means, easy
interaction with powerful feature-selection approaches,
data and metadata, batch conversion of large numbers of files,
and database I/O. (The suggested mboostDevel is from R-Forge