Author: Thibaut Jombart, Zhian N. Kamvar, Caitlin Collins, Roman Lustrik, Marie-
Pauline Beugin, Brian J. Knaus, Peter Solymos, Vladimir Mikryukov, Klaus Schliep, Tiago Maié, Libor Morkovsky, Ismail Ahmed, Anne Cori, Federico Calboli, RJ Ewing
Suggests: pegas, hierfstat, akima, maps, splancs, tripack, testthat,
Collate: adegenet.package.R datasets.R dist.genlight.R orthobasis.R
classes.R constructors.R accessors.R basicMethods.R handling.R
auxil.R minorAllele.R setAs.R SNPbin.R strataMethods.R
dapc.R compoplot.R xvalDapc.R haploPop.R PCtest.R dist.genpop.R
Hs.R propShared.R export.R HWE.R propTyped.R inbreeding.R
glPlot.R gengraph.R simOutbreak.R mutations.R snpposi.R

Description: Toolset for the exploration of genetic and genomic
data. Adegenet provides formal (S4) classes for storing and handling
various genetic data, including genetic markers with varying ploidy
and hierarchical population structure ('genind' class), alleles counts
by populations ('genpop'), and genome-wide SNP data ('genlight'). It
also implements original multivariate methods (DAPC, sPCA), graphics,
statistical tests, simulation tools, distance and similarity measures,
and several spatial methods. A range of both empirical and simulated
datasets is also provided to illustrate various methods.
'hybridize.R' 'scale.R' 'fstat.R' 'import.R' 'seqTrack.R'
'haploPop.R' 'PCtest.R' 'dist.genpop.R' 'Hs.R' 'propShared.R'
'export.R' 'HWE.R' 'propTyped.R' 'inbreeding.R' 'glPlot.R'
Author: Thibaut Jombart [aut] (<https://orcid.org/0000-0003-2226-8692>),

seqinr, parallel, boot, reshape2, dplyr (>= 0.4.1), vegan
Suggests: adespatial, pegas, hierfstat, akima, maps, spdep, splancs,

Suggests: adespatial, pegas, hierfstat, maps, spdep, interp, splancs,

Title: An S4 Lattice-Based Package for the Representation of
Author: Stéphane Dray <stephane.dray@univ-lyon1.fr> and Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>, with contributions from Jean Thioulouse. Based on earlier work by Alice Julien-Laferrière.
Description: Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package.
Imports: ade4, grid, KernSmooth, lattice, methods, RColorBrewer, sp (>=
Suggests: Guerry, maptools, pixmap, spdep, splancs
Collate: adeGsenv.R parameter.R utils.R utilstriangle.R genericMethod.R
utilsclass.R panelfunctions.R ADEg.R ADEgS.R utilsADEgS.R
ADEg.C1.R C1.barchart.R C1.curve.R C1.density.R C1.gauss.R
C1.dotplot.R C1.hist.R C1.interval.R ADEg.S1.R S1.boxplot.R
S1.class.R S1.distri.R S1.label.R S1.match.R ADEg.S2.R
S2.arrow.R S2.class.R S2.corcircle.R S2.density.R S2.distri.R
S2.image.R S2.label.R S2.logo.R S2.match.R S2.traject.R
S2.value.R ADEg.T.R T.image.R T.value.R T.cont.R ADEg.Tr.R
Tr.class.R Tr.label.R Tr.match.R Tr.traject.R ade4-kplot.R
ade4-scatter.R ade4-plot.R s.hist.R multiplot.R s.Spatial.R