Package: TreeSim
Type: Package
Title: Simulating trees under the birth-death model
Version: 1.1
Date: 2011-03-20
Author: Tanja Stadler
Maintainer: Tanja Stadler <tanja.stadler@env.ethz.ch>
Depends: ape, geiger
Description: The package simulates phylogenetic trees under a
constant-rate birth-death process, conditioned on having a
fixed number of final tips, or a fixed age, or a fixed age and
number of tips. When conditioning on the number of final tips,
the method allows for shifts in rates and mass extinction
events during the birth-death process. TreeSim further samples
appropriately trees with n final tips from a set of trees
generated by the common sampling algorithm stopping when a
fixed number m>>n of leaves is first reached. This latter
method is appropriate for m-tip trees generated under a big
class of models (details in the bd.gsa.taxa man page).
License: GPL-2
LazyLoad: yes
Packaged: 2011-03-20 13:50:56 UTC; tanja
Repository: CRAN
Date/Publication: 2011-03-20 19:39:05

Package: TreeSim
Type: Package
Title: Simulating trees under the birth-death model
Version: 1.3
Date: 2011-05-10
Author: Tanja Stadler
Maintainer: Tanja Stadler <tanja.stadler@env.ethz.ch>
Depends: ape, geiger
Description: The package simulates phylogenetic trees under a
constant-rate birth-death process, conditioned on having a
fixed number of final tips, or a fixed age, or a fixed age and
number of tips. When conditioning on the number of final tips,
the method allows for shifts in rates and mass extinction
events during the birth-death process. TreeSim further samples
appropriately trees with n final tips from a set of trees
generated by the common sampling algorithm stopping when a
fixed number m>>n of leaves is first reached. This latter
method is appropriate for m-tip trees generated under a big
class of models (details in the bd.gsa.taxa man page).
License: GPL-2
LazyLoad: yes
Packaged: 2011-05-09 13:54:13 UTC; tanja
Repository: CRAN
Date/Publication: 2011-05-10 16:08:46

Package: TreeSim
Type: Package
Title: Simulating trees under the birth-death model
Version: 1.4
Date: 2011-06-14
Author: Tanja Stadler
Maintainer: Tanja Stadler <tanja.stadler@env.ethz.ch>
Depends: ape, geiger
Description: The package simulates phylogenetic trees under a
constant-rate birth-death process, conditioned on having a
fixed number of final tips, or a fixed age, or a fixed age and
number of tips. When conditioning on the number of final tips,
the method allows for shifts in rates and mass extinction
events during the birth-death process. TreeSim further samples
appropriately trees with n final tips from a set of trees
generated by the common sampling algorithm stopping when a
fixed number m>>n of leaves is first reached. This latter
method is appropriate for m-tip trees generated under a big
class of models (details in the bd.gsa.taxa man page). For
incomplete phylogeny, the missing speciation events can be
added through simulations.
License: GPL-2
LazyLoad: yes
Packaged: 2011-06-14 19:04:33 UTC; tanja
Repository: CRAN
Date/Publication: 2011-06-15 17:53:51