Imports: utils, rentrez, xml2, DBI, RMySQL, glue, memoise

Imports: rentrez, xml2, DBI, RMySQL, glue, memoise

pointing to their entry in the 'NCBI' Gene database. Currently supports
'NCBI' Gene, 'PubMed', Gene Ontology, 'KEGG', CRAN and Bioconductor.
Packaged: 2020-10-26 16:41:12 UTC; aaronwolen

Maintainer: Paul J. McMurdie <mcmurdie@stanford.edu>
Title: An interface package (beta) for the BIOM file format.
Author: Paul J. McMurdie <mcmurdie@stanford.edu> and the
Description: This is an R package for interfacing with the
BIOM format. This package includes basic tools for
reading biom-format files, accessing and subsetting
data tables from a biom object (which is more complex
than a single table), as well as limited support for
writing a biom-object back to a biom-format file. The
design of this API is intended to match the python API
and other tools included with the biom-format project,
but with a decidedly "R flavor" that should be familiar
to R users. This includes S4 classes and methods, as
well as extensions of common core functions/methods.
Suggests: testthat (>= 0.7.1), knitr (>= 1.3)
Collate: 'allClasses.R' 'allPackage.R' 'IO-methods.R' 'BIOM-class.R'

Author: Paul J. McMurdie <mcmurdie@stanford.edu> and the biom-format
Description: This is an R package for interfacing with the BIOM format.
Currently in beta form, this package includes basic tools for
reading biom-format files, accessing and subsetting data tables
from a biom object (which is more complex than a single table),
as well as limited support for writing a biom-object back to a
biom-format file. The design of this API is intended to match
the python API and other tools included with the biom-format
project, but with a decidedly "R flavor" that should be
familiar to R users. This includes S4 classes and methods, as
Suggests: testthat (>= 0.7.1), knitr (>= 1.1)

Suggests: testthat (>= 0.7.1), knitr (>= 1.2)

Description: Performing biological data retrieval and functional annotation with R.
Imports: biomaRt (>= 2.24.0), Biostrings (>= 2.32.1), data.table (>=