Description: Functions for simulation, estimation, and model selection of finite mixtures of Tukey's
Imports: methods, goftest, graphics, LaplacesDemon, latex2exp,
Packaged: 2022-05-05 23:13:45 UTC; tingtingzhan

Packaged: 2017-02-06 18:47:12 UTC; zoeashwood

Author: Daniel E. Ho <dho@law.stanford.edu>, Zoe Ashwood <zashwood@law.stanford.edu>, Becky Elias <Becky.Elias@kingcounty.gov>
Packaged: 2017-02-03 19:35:31 UTC; zoeashwood

Title: Nonparametric Confidence Intervals for Quantiles
person("Nicholas", "Hutson", role =  "aut"),
person("Li", "Yan", role=c("aut", "cre"), email = "li.yan@roswellpark.org")
Description: Based on Alan D. Hutson (1999) <doi:10.1080/02664769922458>, "Calculating nonparametric confidence intervals for quantiles using fractional order statistics", Journal of Applied Statistics, 26:3, 343-353.
Suggests: dplyr, kableExtra, knitr, rmarkdown, testthat (>= 2.1.0)

person("Alan", "Hutson", role =  "aut", email = "alan.hutson@roswellpark.org"),

Title: Clustering Mutations using High Throughput Sequencing (HTS) Data
Authors@R: person("Paul", "Deveau", role = c("aut", "cre"),
Description: Using HTS data, clusters mutations in order to recreate putative clones from the data provided. It requires genotype at the location of the variant as well as the depth of coverage and number of reads supporting the mutation. Additional information may be provided, such as the contamination in the tumor sample. This package also provides a function QuantumCat() which simulates data obtained from tumor sequencing. Latest version can be found at github/DeveauP/QuantumClone .

Description: Using HTS data, clusters mutations in order to recreate putative
clones from the data provided. It requires genotype at the location of the
variant as well as the depth of coverage and number of reads supporting the
mutation. Additional information may be provided, such as the contamination
in the tumor sample. This package also provides a function QuantumCat() which
simulates data obtained from tumor sequencing.
Depends: R (>= 3.1.0), fpc, foreach, optimx, compiler
Imports: doParallel, parallel, gridExtra, ggplot2