Imports: phytools, subplex, Matrix, expoRkit, SparseM

Implements maximum likelihood and bootstrap methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent, under various models including various types of key innovations.
Also contains functions to simulate the diversity-dependent process.

Imports: phytools, subplex, Matrix, expoRkit, SparseM, pracma

Imports: phytools, subplex, Matrix, expm, SparseM, pracma, testthat

Imports: deSolve, ape, phytools, subplex, Matrix, expm, SparseM,
Implements maximum likelihood and bootstrap methods based on
the diversity-dependent birth-death process to test whether
speciation or extinction are diversity-dependent, under various
models including various types of key innovations.
See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309,
Etienne & Haegeman 2012, Am. Nat. 180: E75-E89,
Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099,
Also contains functions to simulate the diversity-dependent

Imports: deSolve, ape, phytools, subplex, Matrix, expm, SparseM

Imports: deSolve, ape, phytools, subplex, Matrix, expm, SparseM, Rcpp

Title: Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
Author: Efthimios S. Motakis, Guy P. Nason, Piotr Fryzlewicz
Description: The package contains the normalizing and variance stabilizing
Data-Driven Haar-Fisz algorithm. Also contains related algorithms
for simulating from certain microarray gene intensity models and

Package: DDHFm
Title: Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
Version: 1.0-2
Author: Efthimios S. Motakis, Guy P. Nason, Piotr Fryzlewicz
Description: The package contains the normalizing and variance stabilizing
Data-Driven Haar-Fisz algorithm. Also contains related algorithms
for simulating from certain microarray gene intensity models and
evaluation of certain transformations.
Maintainer: Efthimios S. Motakis <e.motakis@bris.ac.uk>
Suggests: lokern, vsn, wavethresh
Lazyload: yes
Lazydata: yes
License: GPL version 2 or newer
Packaged: Wed Feb  8 13:17:05 2006; hornik