Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity statistics, beta diversity statistics, differential abundance test, environmental data analysis, null model analysis, network analysis, machine learning and functional analysis.

Title: Microhaplotype Constructor and Visualizer
Authors@R: person("Thomas", "Ng", email = "tngthomasng@gmail.com", role = c("aut", "cre"))
Description: A downstream bioinformatics tool to construct and assist
curation of microhaplotypes from short read sequences.
shinyWidgets (>= 0.4.3), ggiraph (>= 0.6.0)

Authors@R: c(person("Quinn", "Payton", role="aut", email =
email = "Olsen.Tony@epa.gov"), person("Marc", "Weber",
role="ctb", email = "Weber.Marc@epa.gov"), person("Michael",
"McManus", role="ctb", email = "McManus.Michael@epa.gov"),
person("Tom", "Kincaid", role="cre", email =
Author: Quinn Payton <Payton.Quinn@epa.gov> and Tony Olsen
<Olsen.Tony@epa.gov> with contributions from Marc Weber,
Depends: R (>= 2.10), ggplot2, RColorBrewer, rgdal, grid
Description: This group of functions simplifies the creation of linked

Depends: R (>= 2.10), ggplot2, maptools, RColorBrewer, rgdal, grid
Description: This group of functions simplifies the creation of linked micromap

Imports: ggplot2, grid, maptools, RColorBrewer, rgdal

Depends: R (>= 2.10), maptools, RColorBrewer, rgdal, sp

person("Marcus W.", "Beck",  role=c("cre", "ctb"),

Depends: R (>= 3.5), maptools, RColorBrewer, rgdal, sp

Depends: R (>= 3.5), maptools, RColorBrewer, rgdal, sp, sf

Title: Linked Micromap Plots for U. S. States
Author: Dan Carr <dcarr@gmu.edu> and Jim Pearson <jpearson@statnetconsulting.com>,
with contributions from Linda Pickle <linda@statnetconsulting.com>.
Imports: graphics, RColorBrewer, grDevices, stats
Description: This package provides the users the ability to quickly create Linked
Micromap plots of the 50 U.S. states and District of Columbia (51 areas).
Linked Micromaps are visualizations of georeferenced data that link statistical
graphics to an organized series of small maps.
The Help description contains examples of how to use the micromapST function.
This package contains the US and State boundary files and FIPS/State conversion tables
used by the micromapST function and several data sets used in the micromapST examples.
Copyrighted 2013 by Carr, Pearson and Pickle.