Package: RiboSort
Title: Classification and Analysis Package for Microbial Community Profiles
Version: 1.1
Date: 2007-03-14
Author: �na Scallan & Ann-Kathrin Liliensiek
Maintainer: �na Scallan<una.scallan@ucd.ie>
License: GPL
Depends: MASS
Description: RiboSort is an R package for rapid classification of (TRFLP &
ARISA) microbial community profiles. Its function is to eliminate the
laborious task of manually classifying community fingerprints in
microbial studies.
By automatically assigning detected fragments and their respective
relative abundances to appropriate ribotypes, RiboSort saves time and
greatly simplifies the preparation of DNA fingerprint datasets for
statistical analysis.
Packaged: Fri Apr 20 16:27:30 2007; Una Scallan

Title: Data Extraction for People's Republic of China Resident Identity
Description: People's Republic of China resident identity card contains a lot of personal information.
It can extract the location of the household's residence in the identity card, the date of birth, the sex,
the location of the registered police station, and can identify the authenticity of the ID card through the check code.
'Ricetl' provides graphical user interface to process the function of extracting the above effective private information in the ID card number,
and provides a public data set related to the ID number.
Imports: gWidgets, utils, readr, readxl, stringr, tidyverse, writexl,

Packaged: 2018-03-21 12:46:37 UTC; Administrator

Title: Enrichment for Diseases in a Set of Genes
Author: Deisy Morselli Gysi and Katja Nowick
Description: It provides a list of genes associated to diseases (g2d$clean and g2d$complete) based on the following  4 publications (GS2D, Fontaine (2016) <doi:10.18547/gcb.2016.vol2.iss1.e33>, DisGeNET, Pinero (2016) <doi:10.1093/nar/gkw943> Berto2016, Berto (2016) <doi:10.3389/fgene.2016.00031> and  PsyGeNET, Sacristan (2015) <doi:10.1093/bioinformatics/btv301>). Those lists were combined and manually curated to have matching disease names.  When provided a list of gene names, it calculates the disease enrichment of the gene set. The enrichment is calculated using proportion test and Fisher's exact test. Adjusted fdr p-values are returned alongside with p-values combined using the Fisher's method.
Imports: plyr, reshape2, magrittr, stats, metap