Title: Inference and Prediction of Generic Physiologically-Based
person("Christelle", "Lopes", role = "aut"),
person("Ophélia", "Gestin", role = "ctb"),
person("Dominique", "Lamonica", role = "ctb"),
person("Aurélie", "Siberchicot", role = "ctb")
Description: Fit and simulate any kind of
physiologically-based kinetic ('PBK') models whatever the number of compartments.
Moreover, it allows to account for any link between pairs of compartments, as
well as any link of each of the compartments with the external medium. Such
generic PBK models have today applications in pharmacology (PBPK models) to
describe drug effects, in toxicology and ecotoxicology (PBTK models) to describe
chemical substance effects. In case of exposure to a parent compound (drug or
chemical) the 'rPBK' package allows to consider metabolites, whatever their number
and their phase (I, II, ...). Last but not least, package 'rPBK' can also be used for
dynamic flux balance analysis (dFBA) to deal with metabolic networks. See also
Imports: ggplot2, methods, Rcpp (>= 0.12.0), rstan (>= 2.18.1)
Suggests: knitr, loo, rmarkdown, testthat

Description: Packed bar charts are a variation of treemaps for visualizing skewed data.  The concept was introduced by Xan Gregg at 'JMP'.
Packaged: 2018-01-30 20:08:41 UTC; adamspannbauer

Imports: plotly, data.table, scales, shiny

Packaged: 2019-06-16 13:06:02 UTC; adamspannbauer

Title: Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB
person("Marieke","Kuijjer", role = c("aut"), comment = c(ORCID = "0000-0001-6280-3130")),
Description: Download and merge labeled single-cell RNA-seq data from the PanglaoDB <https://panglaodb.se/> into a Seurat object.
Imports: methods, XML, xml2, Seurat, pbapply, Matrix

Title: R interface to the iPlant Discovery Environment
Author: Barb Banbury <bbanbury@utk.edu>, Kurt Michels
Description: An R interface to the iPlant DE (and, in the future, other
phyloinformatics web apps, like the CIPRES Science Gateway)

Depends: R (>= 2.13.0), rjson, RCurl, seqinr

Author: Barb Banbury <darwinthesun@gmail.com> and Kurt Michels <kamichels@math.arizona.edu>, Jeremy M. Beaulieu <jeremy.beaulieu@yale.edu>, Brian O'Meara <bomeara@utk.edu>
Description: Provides an interface to the the many computational resources iPlant offers through their RESTful application programming interface, see <http://www.iplantcollaborative.org/> for more information about iPlant, and <http://www.iplantcollaborative.org/ci/iplant-science-apis> for its APIs.  Currently, 'rPlant' functions interact with the iPlant Agave API, the Taxonomic Name Resolution Service API, and the Phylotastic Taxosaurus API. Before using 'rPlant', users will have to register with the iPlant Collaborative.  See <http://agaveapi.co/> for more information on the Agave API and <http://user.iplantcollaborative.org/> to register with iPlant.