Title: This is an R package that constructs and manipulates population
Description: This is a generic package that produces "Population
Graphs" a graph-theoretic topology based upon conditional
genetic covariance.  This functionality used to be within the
gstudio package, but has been taken out to focus on spatial
integration of graph topologies with existing packages like sp,
Depends: R (>= 2.15), igraph, sp, testthat

Description: This is a generic package that produces "Population Graphs"
a graph-theoretic topology based upon conditional genetic covariance.  This
functionality used to be within the gstudio package, but has been taken out
to focus on spatial integration of graph topologies with existing packages

Title: Estimate Kinship and FST under Arbitrary Population Structure
Description: Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index).  Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.
Imports: Rcpp (>= 0.12.10), RColorBrewer, graphics
Suggests: BEDMatrix, testthat, knitr, rmarkdown, lfa

Imports: Rcpp (>= 0.12.10), RColorBrewer, graphics, grDevices

Description: Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index).  Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.
Imports: Rcpp (>= 0.12.10), RColorBrewer, graphics, grDevices, ape
Suggests: BEDMatrix, testthat, knitr, rmarkdown, lfa, bnpsd

Description: Population Lab is a tool for constructing a virtual electronic
population of related individuals evolving over calendar time, by using
vital statistics, such as mortality and fertility, and disease incidence
Packaged: Thu May 10 21:35:59 2007; monnic

Packaged: Mon May 28 07:10:45 2007; monnic

Packaged: Tue May  8 14:22:15 2007; monnic

Title: Tools for Simplifying the Population and Querying of SQLite
Authors@R: c(person("Daniel", "Bottomly", role=c("cre", "aut"), email="bottomly@ohsu.edu"),
Imports: DBI, igraph, lazyeval, RSQLite (>= 1.0.0)
Description: Provides objects and accompanying methods which facilitates populating and querying SQLite databases.