Packaged: 2021-07-07 07:22:37 UTC; dokuganryu

Package: nat
Type: Package
Title: nat: NeuroAnatomy Toolbox for Analysis of 3D Image Data
Version: 1.0.1
Date: 2013-02-06
Author: Greg Jefferis with contributions from Ashley Manton
Maintainer: Greg Jefferis <jefferis@gmail.com>
URL: https://github.com/jefferis/nat http://jefferislab.org
Description: This package is a reboot of the AnalysisSuite
(https://github.com/jefferis/AnalysisSuite) bundle of R code that I have
been using for a number of years to analyse and visualise 3D biological
image data, especially traced neurons. AnalysisSuite is most easily
installed using the nat.as package presently available at
https://github.com/jefferis/nat.as. The nat package is considerably cleaner
but currently provides only a subset of the full functionality of nat.as /
AnalysisSuite. nat can read 3D images and surfaces in Amira formats. Traced
neurons can be imported from SWC and Amira SkeletonGraph format. These data
can then be visualised in 3D via rgl, manipulated including applying
calculated registrations, e.g. using the CMTK registration suite, and
analysed. There package also has a simple representation for neurons that
have been subjected to a 3D skeletonisation but not formally traced; this
allows morphological comparison between neurons including searches and
clustering.
Depends: R (>= 2.15.1), rgl
Imports: RANN, igraph, methods, filehash
Suggests: testthat
License: GPL-3
LazyData: yes
Packaged: 2014-02-06 23:44:28 UTC; jefferis
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-02-07 13:56:28

Package: nat
Type: Package
Title: nat: NeuroAnatomy Toolbox for Analysis of 3D Image Data
Version: 1.0
Date: 2013-02-04
Author: Greg Jefferis with contributions from Ashley Manton
Maintainer: Greg Jefferis <jefferis@gmail.com>
URL: https://github.com/jefferis/nat https://jefferislab.org
Description: This package is a reboot of the AnalysisSuite
(https://github.com/jefferis/AnalysisSuite) bundle of R code that I have
been using for a number of years to analyse and visualise 3D biological
image data, especially traced neurons. AnalysisSuite is most easily
installed using the nat.as package presently available at
https://github.com/jefferis/nat.as. The nat package is considerably cleaner
but currently provides only a subset of the full functionality of
nat.as/AnalysisSuite. This package can read 3D images and surfaces in Amira
formats. Traced neurons can be imported from SWC and Amira SkeletonGraph
format. These data can then be visualised in 3D via rgl or analysed
including applying calculated registrations, typically using the CMTK
registration suite from image data to neuron tracings. There is
functionality for representing image data for neurons that have been
skeletonised but not formally traced. This representation allows
morphological comparison with neurons including searches/clustering.
Depends: R (>= 2.15.1), rgl
Imports: RANN, igraph, methods, filehash
Suggests: testthat
License: GPL-3
LazyData: yes
Packaged: 2014-02-04 00:16:08 UTC; jefferis
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-02-04 10:35:20