Imports: tools, utils, poio (>= 0.0-3), digest, tibble, hunspell,

Title: Multiplicative SHAP Values for Two-Part Models
Description: Allows for the computation of mSHAP values on
two-part models as proposed  by Matthews, S. and Hartman, B.
Also contains functions for simple plotting of
the results (or any SHAP values). For information about the
TreeSHAP algorithm that mSHAP builds on, see Lundberg, S.M.,
Erion, G., Chen, H., DeGrave, A., Prutkin, J.M., Nair, B., Katz,
R., Himmelfarb, J., Bansal, N., Lee, S.I. (2020)
forcats, stringr, ggplot2, ggbeeswarm, rlang, tidyr, tidyselect
Suggests: rmarkdown, knitr, insuranceData, reticulate, caret, testthat
Packaged: 2021-06-17 00:57:16 UTC; spencer.matthews

Title: An R Package for Exploring Molecular Signatures Database
Description: The Molecular Signatures Database ('MSigDB') is one of the most widely
used and comprehensive databases of gene sets for performing gene set
enrichment analysis <doi:10.1016/j.cels.2015.12.004>. The 'msig' package provides
you with powerful, easy-to-use and flexible query functions for the 'MsigDB'
There are 2 query modes in the 'msig' package: online query and local query.
Both queries contain 2 steps: gene set name and gene.
The online search is divided into 2 modes: registered search and
non-registered browse. For registered search, email that you registered should
Local queries can be made from local database, which can be updated by msig_update() function.
Imports: do, rvest, xml2, set, plyr, httr, jsonlite, utils, kableExtra,

Title: MSigDB for Multiple Organisms in a Tidy Data Format
Description: Provides the 'Molecular Signatures Database' (MSigDB) gene sets
used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et
<doi:10.1016/j.cels.2015.12.004>) for various frequently studied model
organisms in a standard R data frame with key-value pairs.

Title: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
typically used with the 'Gene Set Enrichment Analysis' (GSEA) software
(Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015
<doi:10.1016/j.cels.2015.12.004>) in a standard R data frame with key-value
pairs. Included are the original human gene symbols and Entrez IDs as well
as the equivalents for various frequently studied model organisms such as