Title: Permutation-based FDR Point and Confidence Interval Estimation
Description: FDR functions for permutation-based estimators, including
pi0 as well as FDR confidence intervals. The confidence
intervals account for dependencies between tests by the
incorporation of an overdispersion parameter, which is

Description: FDR functions for permutation-based estimators, including pi0 as well as FDR
confidence intervals. The confidence intervals account for dependencies between
tests by the incorporation of an overdispersion parameter, which is estimated
Packaged: 2013-10-05 15:21:10 UTC; joshuamillstein

Title: Permutation-Based FDR Point and Confidence Interval Estimation

"Joshua", "Millstein", email = "joshua.millstein@usc.edu",

from the permuted data. Also included are options for an analog parametric approach.
Suggests: rmarkdown, knitr, GEOquery, dplyr, foreach
Packaged: 2022-06-04 23:47:51 UTC; joshuamillstein

Packaged: 2022-10-17 23:47:06 UTC; joshuamillstein

Title: Estimation and Control of (Local) False Discovery Rates
Description: This packages contains utility functions for
controlling and estimating (local) false discovery rates,
including some diagnostic plots to support the choice of
Packaged: Fri Aug 11 23:01:45 2006; strimmer

Package: fdrtool
Version: 1.1.0
Date: 2007-02-17
Title: Estimation and Control of (Local) False Discovery Rates
Author: Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmer@uni-leipzig.de>
Depends: R (>= 2.2.1)
Suggests:
Description: This package allows to estimate both tail area-based
false discovery rates (Fdr) as well as local false discovery rates (fdr)
for a variety of null models (p-values, z-scores, correlation coeficients,
t-statistics).  The proportion of null values and the parameters
of the null distribution are adaptively estimated from the data.
In addition, the package contains unctions for non-parametric density
estimation (Grenander estimator), for monotonic regression, for
computing the greatest convex minorant (GCM) and the least concave
majorant (LCM), and for the half-normal and correlation distribution.
License: GPL version 2 or newer
URL: http://strimmerlab.org/software/fdrtool/
Packaged: Sun Feb 18 00:14:02 2007; strimmer