person("Kathleen", "Coburn", role = "ctb"),
person("Nicole", "Zelinsky", role = "ctb"))
compute.es, SCMA, SCRT, irr, shinyBS, weightr
Packaged: 2017-07-11 21:46:14 UTC; Kyle Hamilton

Author: Authors@R: c(person("William Kyle", "Hamilton", role = c("aut", "cre"),
person("Burak", "Aydin", role = c("ctb", "trl"),

Title: Ordinary least square test and Multivariate Analysis Of Variance
Author: Chih-Yi Chien, Chen-An Tsai, Ching-Wei Chang, and James J. Chen
Description: A gene set analysis functions for one-sided test (OLS) and
two-sided test (multivariate analysis of variance).  If the
experimental conditions are equal to 2, the p-value for
Hotelling's t^2 test is calculated.  If the experimental
conditions are great than 2, the p-value for Wilks' Lambda is
deterimined and post-hoc test is reported too.  The p-value for
individual gene test of significant gene sets are also listed.

Package: MAVTgsa
Type: Package
Title: Ordinary least square test and Multivariate Analysis Of Variance
test with n contrasts
Version: 1.2
Date: 2012-10-04
Author: Chih-Yi Chien, Chen-An Tsai, Ching-Wei Chang, and James J. Chen
Maintainer: Chih-Yi Chien <chihyi.chien@fda.hhs.gov>
Depends: R (>= 2.13.2), MASS, corpcor(>= 1.6.0), multcomp(>= 1.2-7)
Description: A gene set analysis function for one-sided test (OLS) and
two-sided test (multivariate analysis of variance).  If the
experimental conditions are equal to 2, the p-value for
Hotelling's t^2 test is calculated.  If the experimental
conditions are great than 2, the p-value for Wilks' Lambda is
deterimined and post-hoc test is reported too.  Three multiple
comparison procedures, Dunnett, Tukey, and sequential pairwise
comparison, are implemented.  The program computes the p-values
and FDR (false discovery rate) q-values for all gene sets.  The
p-values for individual genes in a significant gene set are
also listed.  MAVTgsa generates two visualization output: a
p-value plot of gene sets (GSA plot) and a GST-plot of the
empirical distribution function of the ranked test statistics
of a given gene set.
License: GPL-2
LazyData: Yes
Repository: CRAN
Packaged: 2012-10-11 00:45:42 UTC; pelly
Date/Publication: 2012-10-11 16:02:43