Title: Numerical Integration for Integrated Likelihood
Description: This package calculates the integrated likelihood numerically. Given the Likelihood function and the prior function, this package integrates out the nuisance parameters by Metropolis-Hastings (MCMC) Algorithm.

Title: Integrative Clustering of Multiple Genomic Dataset
Author: Prabhakar Chalise, Rama Raghavan, Brooke Fridley
Description: Carries out integrative clustering analysis using multiple types of genomic dataset.
Depends: R (>= 2.14), MASS, NMF, mclust, cluster, InterSIM

Description: Carries out integrative clustering analysis using multiple types of genomic dataset using integrative Non-negative Matrix factorization.
Depends: R (>= 3.5), MASS, NMF, mclust, cluster, InterSIM

Title: The Integrated and Robust Deconvolution
Description: We developed the Integrated and Robust Deconvolution algorithm to infer cell-type proportions from target bulk RNA-seq data. This package is able to effectively integrate deconvolution results from multiple scRNA-seq datasets and calibrates estimates from reference-based deconvolution by taking into account extra biological information as priors. Moreover, the proposed algorithm is robust to inaccurate external information imposed in the deconvolution system.
Imports: Rcpp (>= 0.11.0), L1pack, limSolve, cowplot, ggplot2,
pheatmap, stats,DescTools, mgcv, reshape2, Biobase
Packaged: 2022-07-13 23:46:21 UTC; chixiang.chen

Imports: Rcpp (>= 0.11.0), limSolve, cowplot, ggplot2, pheatmap,
Packaged: 2022-08-11 17:55:05 UTC; chixiang.chen

Authors@R: person("Yue", "Bai", email = "bai42@wisc.edu", role = c("aut", "cre"))
Packaged: 2016-06-26 14:03:37 UTC; dudupiggy

Title: Joint Modelling of the Gene-Expression and Bioassay Data, Taking
Care of the Effect Due to a Fingerprint Feature
Author: Rudradev Sengupta, Nolen Joy Perualila
Description: Offers modelling the association between gene-expression and bioassay data, taking care of the effect due to a fingerprint feature and helps with several plots to better understand the analysis.