Description: The multinomial diversity model is a toolbox for relating
diversity to complex predictors. It is based on (1) Shannon
diversity; (2) the multinomial logit model, and (3) the link
between Shannon diversity and the log-likelihood of the MLM.

Author: Glenn De'ath <g.death@aims.gov.au>; Code for mdm was adapted from multinom in the nnet package (Brian Ripley <ripley@stats.ox.ac.uk> and Bill Venables <Bill.Venables@csiro.au>)

Title: Molecular Detection Mapping and Analysis Platform
Description: Runs a Shiny web application that merges raw 'qPCR' fluorescence data with related
metadata to visualize species presence/absence detection patterns and assess data quality.
The application calculates threshold values from raw fluorescence data using a method based
on the second derivative method, Luu-The et al (2005) <doi:10.2144/05382RR05>,  and utilizes
the ‘chipPCR’ package by Rödiger, Burdukiewicz, & Schierack (2015) <doi:10.1093/bioinformatics/btv205>
to calculate Cq values. The application has the ability to connect to a custom developed MySQL
database to populate the applications interface. The application allows users to interact with
visualizations such as a dynamic map, amplification curves and standard curves, that allow for
zooming and/or filtering. It also enables the generation of customized exportable reports based
Imports: RMySQL, shinydashboard, DBI, DT, leaflet, leaflet.extras,
shinyjs, ggplot2, dplyr, readxl, plotly, reactable, writexl,
xfun, berryFunctions, shinyWidgets, shiny, htmltools, methods,
Packaged: 2021-02-24 18:39:03 UTC; alkabenawra

Packaged: 2021-03-05 16:23:02 UTC; alkabenawra

Packaged: 2021-03-29 22:19:38 UTC; alkabenawra

Packaged: 2021-04-06 05:25:21 UTC; alkabenawra

Packaged: 2021-06-22 22:12:56 UTC; alkabenawra

Title: Multivariate Distance Matrix Regression
Author: Daniel B. McArtor (dmcartor@nd.edu) [aut, cre]
Maintainer: Daniel B. McArtor <dmcartor@nd.edu>
Description: Allows a user to conduct multivariate distance matrix regression using analytic p-values and compute measures of effect size.