Imports: stats, ggplot2, magrittr, rlang, methods

Title: Tools and Tests for Experiments with Partially Synthetic Data
Description: A set of functions to support experimentation in the utility of partially synthetic data sets.  All functions compare an observed data set to one or a set of partially synthetic data sets derived from the observed data to (1) check that data sets have identical attributes, (2) calculate overall and specific variable perturbation rates, (3) check for potential logical inconsistencies, and (4) calculate confidence intervals and standard errors of desired variables in multiple imputed data sets. Confidence interval and standard error formulas have options for either synthetic data sets or multiple imputed data sets. For more information on the formulas and methods used, see Reiter & Raghunathan (2007) <doi:10.1198/016214507000000932>.
Suggests: synthpop, testthat (>= 2.1.0), spelling

Description: Visualize the steps, transformation information, databases used in a metabolic reconstruction,
by inputting an article in the form of txt.
Imports: ape, dplyr, ggplot2, ggtree, methods, patchwork, plyr,
RColorBrewer, readr, readxl, rlang, SnowballC, stats, stringr,

Description: The tool that quantitatively and qualitatively specifies each reconstruction steps
and can generate a template list of reconstruction steps dynamically selected from a reconstruction step reservoir,
constructed based on all available published GSM papers.

Description: In the past decade, genome-scale metabolic reconstructions have widely been
used to comprehend the systems biology of metabolic pathways within an organism.
Different GSMs are constructed using various techniques that
require distinct steps, but the input data, information conversion and software tools
are neither concisely defined nor mathematically or programmatically formulated
in a context-specific manner.The tool that quantitatively and qualitatively specifies
each reconstruction steps and can generate a template list of reconstruction steps dynamically
selected from a reconstruction step reservoir, constructed based on all available published papers.
Packaged: 2022-11-12 11:49:19 UTC; ouyangshilin