Packaged: Fri Aug 29 10:49:45 2008; meyer

"Christian", family = "Buchta", role = "aut"))
Description: Provides an extensible framework for the efficient
calculation of auto- and cross-proximities, along with
implementations of the most popular ones.
Collate: registry.R database.R dist.R similarities.R dissimilarities.R
Author: David Meyer [aut, cre], Christian Buchta [aut]

person(given = "Christian", family = "Buchta", role = "aut"))
Description: Provides an extensible framework for the efficient calculation of auto- and cross-proximities, along with implementations of the most popular ones.

Description: Provides an extensible framework for the effcient
Packaged: Tue Mar 31 17:47:17 2009; meyer

Packaged: Wed May 28 14:01:46 2008; meyer

Title: Computes Proximity in Large Sparse Matrices
person("Kohei", "Watanabe", email = "watanabe.kohei@gmail.com", role = c("cre", "aut", "cph"),
Computes proximity between rows or columns of large matrices efficiently in C++.
Functions are optimized for large sparse matrices using the Armadillo and Intel TBB libraries.
Among several built-in similarity/distance measures, computation of correlation,
cosine similarity and Euclidean distance is particularly fast.
LinkingTo: Rcpp, RcppParallel, RcppArmadillo (>= 0.7.600.1.0)
Imports: Matrix (>= 1.2), Rcpp (>= 0.12.12), RcppParallel

Functions are optimised for large sparse matrices using the Armadillo and Intel TBB libraries.

person("Robrecht", "Cannoodt", email = "rcannood@gmail.com", role = c("aut"),

Suggests: testthat, entropy, proxy, knitr, rmarkdown

Title: Minimal Protein Set Explaining Peptide Spectrum Matches
Description: Determine minimal protein set explaining peptide spectrum matches.
Imports: Matrix, doParallel, foreach, seqinr

Title: Minimal Protein Set Explaining Peptide Precursors
Description: Determine minimal protein set explaining peptide precursors.

Description: Determine minimal protein set explaining
peptide spectrum matches. Utility functions for creating fasta amino acid databases with decoys and contaminants.
Peptide false discovery rate estimation for target decoy search results on psm, precursor, peptide and protein
Imports: AhoCorasickTrie, Matrix, doParallel, foreach, plyr, readr,