Author: Tristan Mahr [aut, cre] (<https://orcid.org/0000-0002-8890-5116>)

Title: QTL Analysis in Autopolyploid Bi-Parental F1 Populations
Description: Quantitative trait loci (QTL) analysis in polyploid bi-parental F1 populations.
For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated.
Significance thresholds, exploring QTL allele effects and visualising results are provided.
The methods have been largely described in the dissertation of P.M. Bourke in 2018 <doi:10.18174/444415>.
Imports: abind, doParallel, foreach, Hmisc, knitr, nlme, RColorBrewer,

Description: Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in
Suggests: igraph, mappoly, polymapR, rmarkdown

person("Geert","van Geest", role = "ctb"),
For background, see the 2018 dissertation of P.M. Bourke <doi:10.18174/444415>.

For more background and to reference the package see <doi:10.1093/bioinformatics/btab574>.

Suggests: igraph, mappoly (>= 0.3.0), polymapR, rmarkdown

Authors@R: c(person("Norm", "Matloff", email = "matloff@cs.ucdavis.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9179-6785")),
person("Xi", "Cheng", email = "xicheng0821@gmail.com", role = c("aut")),
person("Pete", "Mohanty", email = "pmohanty@stanford.edu", role = c("aut"), comment = c(ORCID = "0000-0001-8531-3345")),
person("Bohdan", "Khomtchouk", email = "bohdan@stanford.edu", role = c("aut")),
person("Matthew", "Kotila", email = "mrkotila@ucdavis.edu", role = c("aut")),
person("Robin", "Yancey", email = "reyancey@ucdavis.edu", role = c("aut")),
person("Robert", "Tucker", email = "ratucker@ucdavis.edu", role = c("aut")),
person("Allan", "Zhao", email = "awxzhao@ucdavis.edu", role = c("aut")),
person("Tiffany", "Jiang", email = "thjiang@ucdavis.edu", role = c("ctb")))
Description: Automate formation and evaluation of polynomial regression models. Provides support for cross-validating categorical variables. The motivation for this package is described in 'Polynomial Regression As an Alternative to Neural Nets' by Xi Cheng, Bohdan Khomtchouk, Norman Matloff, and Pete Mohanty (<arXiv:1806.06850>).
Imports: nnet,dummies, parallel, partools, RSpectra, stats, utils
Author: Norm Matloff [aut, cre] (<https://orcid.org/0000-0001-9179-6785>),