Title: Algorithms and framework for Nonnegative Matrix Factorization
Authors@R: c( person("Renaud", "Gaujoux", role=c('aut', 'cre'),
"Seoighe", role='ths') , person("P.", "Brunet", role = "ctb",
comment='method: brunet (Matlab original version)') ,
person("H.", "Kim", role = "ctb", comment='methods: snmf/r(l)
Description: This package provides a framework to perform Non-negative
Matrix Factorization (NMF). It implements a set of already
published algorithms and seeding methods, and provides a
framework to test, develop and plug new/custom algorithms. Most
of the built-in algorithms have been optimized in C++, and the
main interface function provides an easy way of performing
parallel computations on multicore machines.
Depends: R (>= 2.15.2), methods, stats, pkgmaker (>= 0.15.2), rngtools,
Imports: graphics, rngtools, stringr, grDevices, gridBase, colorspace,
Suggests: RcppOctave (>= 0.8.12), Biobase, fastICA, doMPI, bigmemory
(>= 4.2), synchronicity, corpcor, xtable, devtools, knitr,
Collate: 'rmatrix.R' 'nmf-package.R' 'utils.R' 'simulation.R'

Depends: R (>= 2.15.2), methods, stats, pkgmaker (>= 0.16), rngtools,

Depends: R (>= 2.15.2), methods, utils, stats, pkgmaker (>= 0.16),

Title: Framework for Nonnegative Matrix Factorization (NMF) algorithms.
framework to test and develop new algorithms.
Collate: utils.R options.R NMF-class.R NMFstd-class.R NMFOffset-class.R
NMFStrategyIterative-class.R fcnnls.R snmf.R lnmf.R ica.R
nndsvd.R seed.R nmf.R Bioc-layer.R nmf-package.R

framework to test, develop and plug new/custom algorithms.

Description: This package provides a framework to perform Non-negative Matrix
Factorization (NMF). It implements a set of already published algorithms
and seeding methods, and provides a framework to test, develop and plug
new/custom algorithms. Most of the built-in algorithms have been optimized
in C++, and the main interface function provides an easy way of performing
Depends: R (>= 3.0.0), methods, utils, pkgmaker (>= 0.20), registry,
Imports: graphics, stats, stringr, digest, grid, grDevices, gridBase,
colorspace, RColorBrewer, foreach, doParallel, ggplot2,
Suggests: RcppOctave (>= 0.11), fastICA, doMPI, bigmemory (>= 4.2),
synchronicity, corpcor, xtable, devtools, knitr, bibtex, RUnit,
Collate: 'rmatrix.R' 'nmf-package.R' 'utils.R' 'versions.R'
'algorithmic.R' 'options.R' 'grid.R' 'colorcode.R' 'atracks.R'
'nmf.R' 'rnmf.R' 'run.R' 'seed-base.R' 'seed-ica.R'