Title: AUC Estimation of Interval Censored Survival Data

Title: Iterated Convex Minorant Algorithm for interval censored event data
Author: Volkmar Henschel, Christiane Heiss, Ulrich Mansmann
Description: Implementation of ICM-Algorithm by Wei Pan, J. Comp. & Gr. Stat. 78: 109-120, 1999
Algorithm for the Cox proportional hazard model for interval censored data
Packaged: Mon Feb 23 11:44:07 2009; hornik

Packaged: Thu Feb 22 15:30:57 2007; inst_adm

Title: Iterated Convex Minorant Algorithm for interval censored event
Description: Implementation of ICM-Algorithm by Wei Pan, J. Comp. & Gr.
Stat. 78: 109-120, 1999 Algorithm for the Cox proportional

Author: Volkmar Henschel [aut, cre], Ulrich Mansmann [aut], Christiane

Author: Volkmar Henschel<henschel@ibe.med.uni-muenchen.de>, Christiane Heiss<christiane.heiss@web.de>, Ulrich Mansmann <mansmann@ibe.med.uni-muenchen.de>
Packaged: Wed Feb  8 12:58:39 2006; hornik

Title: Mixture Cure Models with Random Effects
Authors@R: person("Yingwei", "Peng", role = c("aut", "cre"), email = "yingwei.peng@queensu.ca")
Description: Mixture cure models with random effects to survival data as described in Peng and Taylor (2011) <doi:10.1002/sim.4098>.

Title: Reconstruction of a Directed Acyclic Graph with Interventions
Description: Provides intdag() for a constrained maximum likelihood estimate of a directed acyclic graph with intervention data. Also available is obsdag() for an estimate with observation data only, based on the method in the paper by Yuan, Shen and Pan (2018) <doi:10.1093/biomet/asy057>.

Title: Integrative Analysis of RNA-Seq and ChIP-Seq Data
Description: Integrative analysis of gene expression (RNA-Seq data), and histone
modification data for user-defined sets of histone marks (ChIP-Seq data) to
discover consistent changes in genes between biological conditions.
Additionally, Pareto optimization is used to prioritize genes based on the
level of consistent changes in both RNA-Seq and ChIP-Seq data.
Imports: GenomicRanges, GenomeInfoDb, IRanges, GenomicAlignments,
biomaRt, Rsamtools, rPref, DESeq2, apeglm