Imports: nlme, Rcpp (>= 0.12.19), dplyr, tibble, ggplot2 (>= 3.0.0),
rstan (>= 2.18.1), rstantools (>= 1.5.1), assertthat, stringr,
Suggests: rmarkdown, knitr, covr, testthat

Imports: nlme, Rcpp (>= 0.12.19), methods, dplyr, tibble, ggplot2 (>=
3.2.0), rstan (>= 2.19.1), assertthat, stringr, shiny
LinkingTo: StanHeaders (>= 2.18.0), rstan (>= 2.19.0), BH (>=

Imports: nlme, Rcpp (>= 1.0.3), dplyr, methods, tibble (>= 3.0.0),
ggplot2 (>= 3.3.0), rstan (>= 2.21.0), assertthat, stringr,
Suggests: rmarkdown, knitr, covr, testthat, vdiffr
LinkingTo: StanHeaders (>= 2.21.0), rstan (>= 2.21.0), BH (>=

email = "dieter.menne@menne-biomed.de", role = c("aut","cre")))
Title: Analyzing Gastric Emptying from MRI or 'Scintigraphy'
Description: Fits gastric emptying time series from MRI or 'scintigraphic' measurements
ggplot2 (>= 3.2.0), rstan (>= 2.21.0), assertthat, stringr,
Suggests: rmarkdown, knitr, covr, testthat, vdiffr, rstantools

Suggests: rmarkdown, knitr, covr, testthat (>= 2.99), ragg, vdiffr,

Title: Genetic Data Manipulation (Quality Control, GRM and LD
Computations, PCA), Linear Mixed Models (AIREML Algorithm),
Author: Hervé Perdry & Claire Dandine-Roulland
Description: Manipulation of genetic data (SNPs), computation of Genetic Relationship Matrix, Linkage Disequilibrium, etc. Efficient algorithms for Linear Mixed Model (AIREML, diagonalisation trick).
Depends: R (>= 2.10), Rcpp, RcppParallel, methods, WhopGenome,

Description: Manipulation of genetic data (SNPs), computation of Genetic Relationship Matrix, Linkage Disequilibrium, etc. Efficient algorithms for Linear Mixed Model (AIREML, diagonalization trick).

Computations, PCA), Linear and Logistic Mixed Models (AIREML
Depends: Rcpp, RcppParallel, methods, LDheatmap
Imports: WhopGenome (>= 0.9.4), CompQuadForm

Title: Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models

Authors@R: c( person("Hervé", "Perdry", role = c("cre", "cph"), email = "herve.perdry@u-psud.fr"),
person("Claire", "Dandine-Roulland", role = c("aut", "cph")),
person("Deepak", "Bandyopadhyay", role = "cph", comment = "C++ gzstream class" ), # Deepak & Lutz for gzstream class
person("Lutz", "Kettner", role = "cph", comment = "C++ gzstream class" ) )
Description: Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML) .
Deepak Bandyopadhyay [cph] (C++ gzstream class),