Packaged: Fri Oct 20 13:08:36 2006; jshin

Packaged: Wed Jan 10 13:20:10 2007; jshin

Packaged: Wed Apr 11 12:57:00 2007; jshin

Packaged: Tue Sep 18 19:46:38 2007; jshin

Packaged: Tue Jan 13 18:26:05 2009; jshin

Author: Ji-Hyung Shin <shin@sfu.ca>, Sigal Blay <sblay@sfu.ca>,
Nicholas Lewin-Koh <nikko@hailmail.net>, Brad McNeney
Description: Produces a graphical display, as a heat map, of measures
of pairwise linkage disequilibria between SNPs. Users may
optionally include the physical locations or genetic map
Packaged: Mon Jan 11 18:20:40 2010; jshin

Packaged: Fri Mar  3 15:29:46 2006; root

Suggests: rtracklayer, GenomicRanges, chopsticks (>= 1.18.0), lattice

Suggests: rtracklayer, GenomicRanges, chopsticks (>= 1.18.0), lattice,

Title: Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Suggests: rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice,

distances of each SNP on the plot. Users should note that the
imported package 'snpStats' and the suggested packages
'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all

of pairwise linkage disequilibria between single nucleotide polymorphisms (SNPs). Users may
distances of each SNP on the plot. The methods are described in
Shin et al. (2006) <doi:10.18637/jss.v016.c03>. Users should note that the

Maintainer: Timothy A. Myers <myersta@mail.nih.gov>
Description: Provides access to the LDlink API (<https://ldlink.nci.nih.gov/?tab=apiaccess>)
using the R console.  This programmatic access facilitates researchers who are interested
in performing batch queries in 1000 Genomes Project data using LDlink.

Title: An R Package for Calculating Linkage Disequilibrium

Title: Calculating Linkage Disequilibrium (LD) in Human Population
Description: Provides access to the 'LDlink' API (<https://ldlink.nci.nih.gov/?tab=apiaccess>)
using the R console.  This programmatic access facilitates researchers who are
interested in performing batch queries in 1000 Genomes Project (2015) <doi:10.1038/nature15393>
data using 'LDlink'. 'LDlink' is an interactive and powerful suite of web-based tools for querying
germline variants in human population groups of interest. For more details, please see
Machiela et al. (2015) <doi:10.1093/bioinformatics/btv402>.
Suggests: testthat, knitr, rmarkdown, spelling