Package: BinQuasi
Version: 0.1-3
Date: 2018-03-29
Title: Analyzing Replicated ChIP Sequencing Data Using Quasi-Likelihood
Authors@R: c(
person("Emily", "Goren", role=c("aut", "cre"), email="emily.goren@gmail.com"),
person("Steve", "Lund", role="aut", comment="The author of the QuasiSeq package, from which all functions were modified to produce this package."),
person("Long", "Qu", role="aut", comment="The author of the QuasiSeq package, from which all functions were modified to produce this package."),
person("Ian", "Marschner", role="aut", comment="The author of glm2::glm.fit2, which was modified slightly leading to glm.fit3 in this package."),
person("Daniel", "Gerhard", role="aut", comment="The author of mcprofile::orglm.fit, which was modified slightly and used under the same name in this package."),
person("R Core Team", role="aut", comment="The author of stats::glm.fit, which was modified slightly leading to glm.fit3 in this package.")
)
Imports: edgeR, mgcv, pracma, quadprog, Rsamtools, GenomicAlignments,
GenomicRanges, IRanges, csaw(>= 1.12.0), SummarizedExperiment,
BiocGenerics, S4Vectors
Suggests: nleqslv, knitr, rmarkdown
Description: Identify peaks in ChIP-seq data with biological replicates using a one-sided quasi-likelihood ratio test in quasi-Poisson or quasi-negative binomial models.
License: GPL (>= 2)
NeedsCompilation: yes
Maintainer: Emily Goren <emily.goren@gmail.com>
URL: https://github.com/emilygoren/BinQuasi
BugReports: https://github.com/emilygoren/BinQuasi/issues
Author: Emily Goren [aut, cre],
Steve Lund [aut] (The author of the QuasiSeq package, from which all
functions were modified to produce this package.),
Long Qu [aut] (The author of the QuasiSeq package, from which all
functions were modified to produce this package.),
Ian Marschner [aut] (The author of glm2::glm.fit2, which was modified
slightly leading to glm.fit3 in this package.),
Daniel Gerhard [aut] (The author of mcprofile::orglm.fit, which was
modified slightly and used under the same name in this package.),
R Core Team [aut] (The author of stats::glm.fit, which was modified
slightly leading to glm.fit3 in this package.)
RoxygenNote: 6.0.1
VignetteBuilder: knitr
Packaged: 2018-03-29 17:51:18 UTC; emilygoren
Repository: CRAN
Date/Publication: 2018-04-03 19:12:23 UTC