Packaged: 2020-08-23 07:08:11 UTC; dusadrian

Title: Package Admix for Admixture (aka Contamination) Models
Description: Implements several methods to estimate the unknown quantities related
to two-component admixture models, where the two components can belong to any
distribution (note that in the case of multinomial mixtures, the two components
must belong to the same family). Estimation methods depend on the assumptions
made on the unknown component density (see Bordes and Vandekerkhove (2010) <doi:10.3103/S1066530710010023>;
Patra and Sen (2016) <doi:10.1111/rssb.12148>); Milhaud, Pommeret, Salhi and Vandekerkhove
(2021) <https://hal.archives-ouvertes.fr/hal-03201760>). In practice, one can estimate both the
mixture weight and the unknown component density in a wide variety of frameworks.
On top of that, hypothesis tests can be performed in one and two-samples contexts
to test the unknown component density. Finally, clustering of unknown
mixture components is also feasible in a K-samples setting.
Imports: base, fdrtool, graphics, Iso, latex2exp, MASS, methods,
orthopolynom, pracma, Rcpp, stats, utils
Suggests: rmutil, doParallel, foreach, evd, logitnorm, flexsurv, plyr,
reshape2, gridExtra, lattice, testthat (>= 3.0.0), knitr,

(2021) <doi:10.1016/j.jspi.2021.05.010>). In practice, one can estimate both the

Title: An Interface for Running 'ADMIXTOOLS' Analyses
Description: An interface for performing all stages of 'ADMIXTOOLS' analyses
(<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions
(D, f4, f3, etc.) completely automate the generation of intermediate
configuration files, run 'ADMIXTOOLS' programs on the command-line, and
parse output files to extract values of interest. This allows users to focus
on the analysis itself instead of worrying about low-level technical details.
A set of complementary functions for processing and filtering of data in
the 'EIGENSTRAT' format is also provided.
Imports: dplyr, magrittr, readr, stringr, tibble, stats, rlang, utils
Suggests: covr, glue, testthat, tidyr, knitr, rmarkdown, tidyverse
SystemRequirements: ADMIXTOOLS suite of command-line utilities for
<https://reich.hms.harvard.edu/software> for the most recent
installation instructions and further information.
Packaged: 2020-07-01 19:15:50 UTC; martin_petr
Author: Martin Petr [aut, cre] (<https://orcid.org/0000-0003-4879-8421>)