Title: A General Framework of Multivariate Mixed-Effects Selection
Description: Offers a general framework of multivariate mixed-effects
models for the joint analysis of multiple correlated outcomes with clustered
data structures and potential missingness proposed by Wang et al. (2018) <doi:10.1093/biostatistics/kxy022>. The missingness of outcome values may
depend on the values themselves (missing not at random and non-ignorable),
or may depend on only the covariates (missing at random and ignorable), or both.
This package provides functions for two models: 1) mvMISE_b()
allows correlated outcome-specific random intercepts with a factor-analytic
structure, and 2) mvMISE_e() allows the correlated outcome-specific
error terms with a graphical lasso penalty on the error precision matrix. Both functions
are motivated by the multivariate data analysis on data with clustered structures
from labelling-based quantitative proteomic studies. These models and functions
can also be applied to univariate and multivariate analyses of clustered data
with balanced or unbalanced design and no missingness.

Title: Multivariate Comparative Tools for Fitting Evolutionary Models
Author: Julien Clavel, with contributions from Aaron King, and Emmanuel Paradis
Description: Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees
Depends: R(>= 2.9.1), phytools, ape, corpcor, subplex
Packaged: 2014-02-07 13:46:45 UTC; julien.clavel

Packaged: 2014-04-24 14:46:58 UTC; julien.clavel

Description: Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees.
Depends: R(>= 2.9.1), phytools, ape, corpcor, subplex, spam
Packaged: 2015-03-17 18:41:05 UTC; julienclavel

Packaged: 2015-03-22 12:45:20 UTC; julienclavel

Packaged: 2015-05-03 23:16:39 UTC; julienclavel

Packaged: 2015-08-23 23:13:00 UTC; julienclavel

Description: Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees and time series.
Packaged: 2016-06-17 23:25:59 UTC; julienclavel