person("Jonathan", "Kitt", , "jonathan.kitt@protonmail.com", role = c("ctb", "trl")),
person("Antonio J.", "Pérez-Luque", ,"ajpelu@gmail.com", role = c("ctb", "trl"),

person("Daniel", "Possenriede", ,"possenriede+r@gmail.com", role = c("ctb", "trl"),
spelling, testthat (>= 3.0.0), withr, parsedate, readr
Daniel Possenriede [ctb, trl] (<https://orcid.org/0000-0002-6738-9845>),

Imports: lifecycle, Rcpp, rlang, stringr

Title: Scientific Data on Time of Lineage Divergence for Your Taxa
person("Brian", "O'Meara", email = "bomeara@gmail.com", role=c("aut")),
person("Luna L.", "Sanchez Reyes", email = "sanchez.reyes.luna@gmail.com", role=c("aut", "cre")),
Description: Methods and workflows to get chronograms (i.e., phylogenetic trees with branch lengths
proportional to time), using open, peer-reviewed, state-of-the-art scientific data on time of lineage divergence.
This package constitutes the main underlying code of the DateLife web service
at <www.datelife.org>. To obtain a single summary chronogram from a group of
relevant chronograms, we implement the Super Distance Matrix (SDM) method
To find the grove of chronograms with a sufficiently overlapping set of taxa
for summarizing, we implement theorem 1.1. from Ané et al. (2009)
A given phylogenetic tree can be dated using time of lineage divergence data
as secondary calibrations (with caution, see Schenk (2016) <doi:10.1371/journal.pone.0148228>).
To obtain and apply secondary calibrations, the package implements the congruification method described
in Eastman et al. (2013) <doi:10.1111/2041-210X.12051>. Tree dating can be performed with different methods
including BLADJ (Webb et al. (2008) <doi:10.1093/bioinformatics/btn358>), PATHd8
and Ronquist (2001) <doi:10.1093/bioinformatics/17.8.754>), and treePL (Smith
Imports: ape, abind, bold, phangorn, phytools, ips, cluster, compare,
geiger, stats, stringr, rotl, paleotree, knitcitations,
phylobase, taxize, treebase, utils, httr, plyr, phylocomr
Suggests: testthat, knitr, rmarkdown, usethis, devtools, covr, msa,