covr, ggplot2, knitr, msm, rmarkdown, scales, testthat,
truncnorm
bookdown, covr, ggplot2, knitr, mstate, msm, numDeriv,
pracma, rmarkdown, scales, testthat, truncnorm
covr, ggplot2, knitr, mstate, msm, numDeriv, pracma,
rmarkdown, scales, testthat, truncnorm
covr, ggplot2, kableExtra, knitr, mstate, msm, nnet,
numDeriv, pracma, rmarkdown, scales, testthat, truncnorm
covr, ggplot2, kableExtra, knitr, mstate, nnet, numDeriv,
pracma, rmarkdown, scales, testthat, truncnorm
covr, kableExtra, knitr, magrittr, mstate, nnet, numDeriv,
pracma, rmarkdown, scales, testthat, truncnorm
Cairo, checkmate, lubridate, dplyr, knitr, testthat,
rmarkdown, covr
Cairo, knitr, testthat, rmarkdown, covr, dplyr
devtools, ggplot2, glmnet, knitr, plyr, reshape, reshape2,
testthat, rmarkdown
devtools, ggplot2, glmnet, knitr, plyr, reshape, reshape2,
rmarkdown, testthat
MASS, lattice, gridExtra, scales, numDeriv
knitr, ggplot2, rmarkdown, R.rsp, testthat (>= 3.0.0)
knitr, rmarkdown, survival, ggplot2, httr, viridisLite
knitr, rmarkdown, survival, ggplot2, httr, viridisLite,
shiny, MASS, gapminder
knitr, rmarkdown, survival, ggplot2, httr, viridisLite,
shiny, MASS, gapminder, forecast, geojsonio, testthat, covr,
spelling
realized, robustbase, cubature, mvtnorm, chron, timeDate,
quantmod
timeDate, robustbase, cubature, mvtnorm, chron, quantmod
robustbase, cubature, mvtnorm, chron, timeDate, quantmod,
MASS, sandwich, numDeriv, FKF, BMS, rugarch
covr, FKF, BMS, rugarch, testthat, knitr, rmarkdown
mvtnorm, covr, FKF, BMS, rugarch, testthat, knitr, rmarkdown
mvtnorm, covr, FKF, rugarch, testthat, knitr, rmarkdown
shiny, testthat, dplyr, knitr, rmarkdown
bit64 (>= 4.0.0), testthat (>= 3.0.0), covr, knitr, rmarkdown
knitr, rmarkdown, ggplot2, dplyr, tidyr, reshape2,
bodenmiller, abind
airportr, cowplot, data.table, geosphere, knitr, methods,
purrr, progress, rmarkdown, rnaturalearthdata, scales, stringr,
testthat, units, utils, viridis, covr
airportr, cowplot, geosphere, knitr, methods, purrr,
progress, rmarkdown, rnaturalearthdata, scales, stringr,
testthat, units, utils, viridis, covr
airportr, cowplot, knitr, methods, purrr, progress,
rmarkdown, rnaturalearthdata, scales, stringr, testthat, units,
utils, viridis, covr
airportr, cowplot, knitr, methods, progress, rmarkdown,
rnaturalearthdata, scales, stringr, testthat, units, utils,
viridis, covr
airportr, cowplot, knitr, methods, progress, rmarkdown,
rnaturalearthdata, scales, stringr, testthat, units, utils,
viridis, covr, spelling
knitr, rmarkdown, Matrix, lme4, carData, mlbench, ggplot2,
mlmRev, testthat, MCMCpack
spelling, knitr, rmarkdown, deSolve, testthat (>= 3.0.0),
covr
crayon, lubridate, pillar (>= 1.1.0), testthat
crayon, lubridate, pillar (>= 1.1.0), testthat (>= 3.0.0)
lme4, gamlss, gamlss.dist, pscl, nnet, aods3, VGAM, glmmADMB,
latticeExtra
ggimage, ggplot2, ggrepel, knitr, rmarkdown, scales, sportyR
ROI.plugin.mosek, ROI.plugin.scs, tinytest (>= 1.0.0)
testthat, covr, knitr, rmarkdown, iheatmapr, mice, ropls,
ggplot2
testthat, covr, knitr, rmarkdown, mice, ggplot2
crayon (>= 1.3.4), curl, DBI, ggplot2, ggrepel, httr (>=
0.5), purrr (>= 0.3.0), qs (>= 0.25.1), rmarkdown, RSQLite,
stats, stringi, testthat, tibble (>= 3.0), xml2 (>= 1.3)
crayon (>= 1.3.4), curl, DBI, ggplot2, ggrepel, qs (>=
0.25.1), rmarkdown, RSQLite, stats, stringi, testthat, tibble
(>= 3.0), xml2 (>= 1.3), yaml
knitr, rmarkdown, roxygen2, pander, testthat, usethis
knitr, rmarkdown, spatstat.data, testthat (>= 3.0.0)
testthat (>= 2.1.0), roxygen2, jomo, mitools
rmarkdown, knitr, shinytest2, globals, testthat (>= 3.0.0)
ggplot2, mvtnorm, titanic, sampleSelection, GA (>= 3.2)
testthat, dplyr, knitr, rmarkdown, gridExtra
testthat, dplyr, gridExtra, hunspell, stringi, gcookbook,
clipr, vdiffr, svglite, gdtools, purrr
testthat, dplyr, gridExtra, hunspell, stringi, gcookbook,
clipr, vdiffr, svglite
rgl, RCurl, pracma (>= 2.0.1), foreach, hyperSpec
rgl (>= 0.98.1), RCurl, pracma (>= 2.0.1), foreach, hyperSpec
rgl (>= 0.98.1), RCurl, foreach, hyperSpec
rgl (>= 0.98.1), RCurl, foreach, asdreader
knitr, rmarkdown, AlphaSimR, doParallel, ggplot2
knitr, rmarkdown, formatR, AlphaSimR (>= 0.13.0), doParallel,
ggplot2
testthat, XML, xtable, ztable, Hmisc, reshape, rmarkdown,
pander, chron, lubridate, tibble
testthat, XML, xtable, ztable, Hmisc, reshape, rmarkdown,
pander, chron, lubridate, tibble, tidyr (>= 0.7.2), dplyr (>=
0.7.4)
testthat, XML, xtable, ztable, Hmisc, reshape
testthat, XML, xtable, ztable, Hmisc, reshape, rmarkdown
testthat, XML, xtable, ztable, Hmisc, reshape, rmarkdown,
pander
testthat, XML, xtable, ztable, Hmisc, reshape, rmarkdown,
pander, chron, lubridate
testthat, XML, xml2, Hmisc, reshape, rmarkdown, chron,
lubridate, tibble, purrr, tidyselect, glue, rlang, tidyr (>=
0.7.2), dplyr (>= 0.7.4)
testthat, knitr, magrittr (>= 1.5), tidyr
testthat, knitr, tidyr, rmarkdown, spelling
markdown, testthat, withr, Cairo, ragg, shiny
ggplot2, knitr, rmarkdown, R.rsp, GGally, gplots, scales,
EnvStats, MASS, RColorBrewer, TeachingDemos, classInt, ks,
stringr, reshape, reshape2, gdata, viridis, CensRegMod,
gmodels, colorspace
ggplot2, knitr, rmarkdown, R.rsp, GGally, gplots, scales
ggplot2, knitr, rmarkdown, R.rsp, GGally, gplots, scales,
EnvStats, MASS, RColorBrewer, TeachingDemos, classInt, ks,
reshape2, gdata, viridis, CensRegMod, gmodels, colorspace
ggplot2, knitr, rmarkdown, R.rsp, GGally, gplots, scales,
EnvStats, MASS, RColorBrewer, TeachingDemos, classInt, ks,
stringr, reshape, reshape2, gdata, viridis, CensRegMod,
gmodels, colorspace, cowplot, ggrepel, dplyr, forcats, smatr,
gtools, gridExtra
ggplot2, knitr, rmarkdown, R.rsp, GGally, gplots, scales,
EnvStats, MASS, RColorBrewer, TeachingDemos, classInt, ks,
stringr, reshape, reshape2, gdata, viridis, CensRegMod,
gmodels, colorspace, cowplot, ggrepel, dplyr, forcats, smatr,
gtools, gridExtra, testthat
ggplot2, knitr, rmarkdown, R.rsp, GGally, gplots, scales,
EnvStats, MASS, RColorBrewer, TeachingDemos, classInt, ks,
stringr, reshape, reshape2, viridis, CensRegMod, gmodels,
colorspace, cowplot, ggrepel, dplyr, forcats, smatr, gridExtra,
testthat
ggplot2, knitr, rmarkdown, R.rsp, GGally, gplots, scales,
EnvStats, MASS, RColorBrewer, TeachingDemos, classInt, ks,
stringr, reshape, reshape2, viridis, gmodels, colorspace,
cowplot, ggrepel, dplyr, forcats, smatr, gridExtra, testthat
httptest (>= 3.0.0), knitr, rmarkdown, spelling
testthat, xml2 (>= 1.0.0), fontquiver (>= 0.2.0)
testthat, xml2 (>= 1.0.0), fontquiver (>= 0.2.0), knitr,
rmarkdown
covr, knitr, pkgload, rmarkdown, spelling, xml2
curl, knitr, pkgload, rmarkdown, spelling, xml2
jsonlite, XML, testthat (>= 0.8.0), png, jpeg, httpuv
XML, testthat (>= 0.8.0), png, jpeg, httpuv, knitr
base64enc, httpuv, jpeg, knitr, PKI (>= 0.1-2), png, testthat
(>= 0.8.0), XML
httpuv, jpeg, knitr, png, testthat (>= 0.8.0), readr, xml2
httpuv, jpeg, knitr, png, testthat (>= 0.8.0), readr, xml2,
rmarkdown
httpuv, jpeg, knitr, png, testthat (>= 0.8.0), readr, xml2,
rmarkdown, covr
covr, httpuv, jpeg, knitr, png, readr, rmarkdown, testthat
(>= 0.8.0), xml2
askpass, clipr, covr, docopt, httpuv, jose, jsonlite, knitr,
purrr, rmarkdown, testthat (>= 3.0.0), tibble, webfakes, xml2
askpass, bench, clipr, covr, docopt, httpuv, jose, jsonlite,
knitr, purrr, rmarkdown, testthat (>= 3.0.0), tibble, webfakes,
xml2
knitr, rmarkdown, bookdown, gsheet, inti
testthat, devtools, pdftools, janeaustenr, wordcloud2, knitr,
rmarkdown
spelling, testthat, pdftools, janeaustenr, wordcloud2, knitr,
rmarkdown
spelling, testthat, pdftools, janeaustenr, wordcloud2, knitr,
stopwords, rmarkdown
hurricaneexposuredata (>= 0.0.1), knitr, pander, rmarkdown,
weathermetrics
hurricaneexposuredata (>= 0.0.2), knitr, pander, rmarkdown,
weathermetrics
hurricaneexposuredata (>= 0.1.0), knitr (>= 1.26.0), pander
(>= 0.6.3), rmarkdown (>= 2.0.0), weathermetrics (>= 1.2.2)
testthat, datasets, dplyr, microbenchmark, knitr, rmarkdown,
nycflights13, geosphere, ggplot2
testthat, datasets, dplyr, Hmisc, microbenchmark, knitr,
rmarkdown, nycflights13, geosphere, ggplot2, survey, tibble,
testthat, datasets, desc, dplyr, digest, Hmisc,
microbenchmark, knitr, rmarkdown, nycflights13, geosphere,
ggplot2, readr, rcheology, survey, tibble, tidyr, withr (>=
2.0.0)
testthat (>= 2.1.0), datasets, desc, dplyr, digest, Hmisc,
microbenchmark, knitr, rmarkdown, nycflights13, geosphere,
ggplot2, readr, rcheology, survey, tibble, tidyr, withr (>=
2.0.0)
testthat (>= 2.1.0), datasets, desc, dplyr, digest, Hmisc,
hutilscpp, microbenchmark, knitr, rmarkdown, nycflights13,
geosphere, ggplot2, readr, rcheology, rstudioapi, survey,
tibble, tidyr, withr (>= 2.0.0)
testthat (>= 2.1.0), datasets, desc, dplyr, digest, fst,
Hmisc, hutilscpp, microbenchmark, knitr, rmarkdown,
nycflights13, geosphere, ggplot2, readr, rcheology, rstudioapi,
survey, tibble, tidyr, withr (>= 2.0.0)
bench, testthat (>= 2.1.0), TeXCheckR, covr
bench, parallel, testthat (>= 2.1.0), TeXCheckR, withr, covr
bench, parallel, TeXCheckR, withr, tinytest, covr
testthat, devtools, broom, ggplot2, ReporteRs, psych, nnet
testthat, devtools, broom, ggplot2, ReporteRs, psych, nnet,
covr
testthat, devtools, broom, ggplot2, officer, flextable,
psych, nnet, covr, lme4, crayon
broom, covr, crayon, devtools, flextable, ggplot2, lme4,
nnet, officer, openxlsx, psych, testthat
broom, covr, crayon, devtools, flextable, ggplot2, lazyeval,
lme4, lmtest, nlme, nnet, officer, openxlsx, psych, testthat
broom, covr, crayon, devtools, dplyr, flextable, ggplot2,
httr, knitr, lazyeval, lme4, lmtest, nlme, nnet, officer,
openxlsx, psych, rmarkdown, testthat
broom, covr, crayon, devtools, dplyr, flextable, ggplot2,
httr, knitr, lazyeval, lme4, lmtest, nlme, nnet, officer,
openxlsx, psych, rmarkdown, testthat, tinytex
bookdown, covr, crayon, devtools, dplyr, flextable, ggplot2,
httr, knitr, lazyeval, lme4, lmtest, nlme, nnet, officer,
openxlsx, psych, rmarkdown, sandwich, scales, testthat, tinytex
bookdown, broom (>= 0.5.1), broom.mixed, covr, crayon,
devtools, dplyr, flextable, ggplot2, httr, knitr, lazyeval,
lme4, lmtest, nlme, nnet, officer, openxlsx, psych, rmarkdown,
sandwich, scales, testthat, tinytex
bookdown, broom (>= 0.5.1), broom.mixed, covr, crayon,
devtools, dplyr (>= 0.7.0), flextable (>= 0.5.5), ggplot2,
httr, knitr, lme4, lmtest, nlme, nnet, officer, openxlsx,
psych, rmarkdown, sandwich, scales, testthat, tibble, tinytex
AER, bookdown, broom (>= 0.5.1), broom.mixed, covr, crayon,
devtools, dplyr (>= 0.7.0), fansi, flextable (>= 0.5.5),
ftExtra (>= 0.0.2), ggplot2, httr, knitr, lme4, lmtest, nlme,
nnet, officer, openxlsx, psych, rmarkdown, sandwich, scales,
testthat, tibble, tinytex
AER, bookdown, broom (>= 0.5.1), broom.mixed, covr, crayon,
devtools, dplyr (>= 0.7.0), flextable (>= 0.5.5), ftExtra (>=
0.0.2), ggplot2, httr, knitr, lme4, lmtest, nlme, nnet,
officer, openxlsx, psych, quarto, rmarkdown, sandwich, scales,
testthat, tibble, tinytex
testthat (>= 3.0.0), covr, knitr, rmarkdown, ggplot2
rgdal, ncdf4, magrittr, knitr, markdown, rmarkdown, covr,
testthat
hydroGOF, hydroTSM, lhs, zoo, multicore, scatterplot3d,
vioplot
hydroGOF(>= 0.3-3), hydroTSM(>= 0.3-0), zoo(>= 1.7-2), xts(>=
0.8-2), lhs, scatterplot3d, vioplot, multicore
hydroGOF(>= 0.3-5), hydroTSM(>= 0.3-6), zoo(>= 1.7-2), xts(>=
0.8-2), lhs, multicore, scatterplot3d, vioplot
hydroGOF(>= 0.3-5), hydroTSM(>= 0.3-6), zoo(>= 1.7-2), xts(>=
0.8-2), lhs, parallel, scatterplot3d, vioplot
hydroGOF(>= 0.3-5), hydroTSM(>= 0.3-6), xts(>= 0.8-2),
parallel, scatterplot3d, vioplot, SWAT2R
testthat, knitr, rmarkdown, dataRetrieval, USAboundaries,
ggplot2, gridExtra, kableExtra, R.rsp
testthat, knitr, rmarkdown, dataRetrieval, USAboundaries,
ggplot2, gridExtra, kableExtra
rmarkdown, knitr, testthat (>= 3.0.0), data.table
knitr, rmarkdown, ggplot2, scales, broom, glmnet, testthat
(>= 3.0.0), covr, splines2
sp, rgdal, maptools, tripack, gpclib, akima, maps, oz, mapdata
sp, rgdal, tripack, gpclib, akima, oz, maps, mapdata, maptools
knitr, markdown, rmarkdown, testthat, bookdown, rticles
R.matlab, tripack, deldir, rgl, plotrix, sp, baseline,
compiler, inline, Rcpp, MASS, fastcluster, pls, mvtnorm,
digest, reshape, devtools, R.rsp, tibble
R.matlab, latticeExtra, tripack, deldir, rgl, plotrix,
testthat, ggplot2, pls, playwith, latticist, svUnit, sp,
baseline, compiler, inline, Rcpp
R.matlab, latticeExtra, tripack, deldir, rgl, plotrix,
testthat, ggplot2 (>= 0.9.2), pls, playwith, latticist, svUnit,
sp, baseline, compiler, inline, Rcpp, MASS
R.matlab, latticeExtra, tripack, deldir, rgl, plotrix,
testthat, ggplot2 (>= 0.9.2), playwith, latticist, svUnit, sp,
baseline, compiler, inline, Rcpp, MASS, fastcluster, pls
R.matlab, tripack, deldir, rgl, plotrix, testthat, sp,
baseline, compiler, inline, Rcpp, MASS, fastcluster, pls
R.matlab, tripack, deldir, rgl, plotrix, testthat, sp,
baseline, compiler, inline, Rcpp, MASS, fastcluster, pls,
mvtnorm, digest
R.matlab, tripack, deldir, rgl, plotrix, sp, baseline,
compiler, inline, Rcpp, MASS, fastcluster, pls, mvtnorm,
digest, reshape, devtools, R.rsp
knitr, rmarkdown, plotrix, rlang, webshot2, markdown
rgl, magick, alphahull, knitr, rmarkdown, gridExtra
dplyr, ggplot2, htmltools, httptest (>= 3.0.0), knitr,
rmarkdown, scales
dplyr, ggplot2, htmltools, knitr, rmarkdown, scales
switchr, plotly, BiocStyle, xfun, htmltools, testthat,
ComplexHeatmap, digest, ggplot2, gt, kableExtra, forcats,
leaflet
switchr, plotly, BiocStyle, testthat, ComplexHeatmap, digest,
ggplot2, gt, kableExtra, forcats, leaflet
testthat, outbreaks, knitr, rmarkdown, covr
knitr, rmarkdown, caret, randomForest, e1071, xgboost,
ranger, nnet, testthat, r2d3
knitr, rmarkdown, randomForest, e1071, xgboost, ranger, nnet,
testthat, r2d3, jsonlite, caret
knitr, rmarkdown, randomForest, e1071, xgboost, ranger, nnet,
testthat, r2d3, jsonlite, covr
DALEX, knitr, rmarkdown, randomForest, e1071, ranger, nnet,
testthat, r2d3, jsonlite, covr
data.table, DescTools, forecast, h2o, keras, kernlab,
lubridate, tensorflow, tibble, timeSeries, timeDate, timetk
data.table, forecast, h2o, keras, kernlab, lubridate,
tensorflow, tibble, timeSeries, timeDate, timetk
data.table, forecast, h2o, keras, kernlab, lubridate,
tensorflow, tibble, timeSeries, timeDate, timetk, zoo
dplyr (>= 0.5.0), testthat (>= 2.0.0), knitr, rmarkdown
spelling, dplyr (>= 0.5.0), testthat (>= 2.0.0), knitr,
rmarkdown, ggplot2, purrr, bookdown
testthat, knitr, rmarkdown, gridExtra, ggthemes
hextri, viridis, RColorBrewer, gridSVG (>= 1.7-2), knitr,
jsonlite, testthat, covr, ggplot2, dplyr, tidyr, forcats,
ggmosaic, waffle, ggthemes, ggbeeswarm, ggridges, plotly
covr, dplyr, forcats, ggbeeswarm, ggmosaic, ggplot2,
ggridges, ggthemes, gridSVG (>= 1.7-2), hextri, jsonlite,
knitr, plotly, RColorBrewer, testthat, tidyr, viridis, waffle
covr, iNZightTools (>= 1.9), survey, survival, testthat
covr, jsonlite, RCurl, testthat (>= 3.0.0)
testthat (>= 3.0.0), knitr, nlraa, rmarkdown
tidyverse, rmarkdown, caret, reshape2, lubridate, ggrepel,
writexl, cowplot, DT, gutenbergr, tidytext, rvest, Lahman,
pdftools, HistData, titanic, BiocManager, usethis, testthat (>=
3.0.0)
tidyverse, rmarkdown, caret, reshape2, lubridate, ggrepel,
writexl, cowplot, DT, gutenbergr, tidytext, rvest, Lahman,
pdftools, HistData, titanic, BiocManager, waldo, usethis,
testthat (>= 3.0.0)
tidyverse, rmarkdown, knitr, caret, reshape2, lubridate,
ggrepel, writexl, cowplot, DT, gutenbergr, tidytext, rvest,
Lahman, pdftools, HistData, titanic, BiocManager, waldo,
usethis, vdiffr, testthat (>= 3.0.0), covr
tidyverse, rmarkdown, knitr, kableExtra, caret, reshape2,
lubridate, hexbin, patchwork, ggrepel, GGally, deldir, writexl,
cowplot, DT, gutenbergr, tidytext, rvest, Lahman, pdftools,
HistData, titanic, BiocManager, waldo, usethis, vdiffr,
testthat (>= 3.0.0), covr
tidyverse, rmarkdown, knitr, kableExtra, caret, reshape2,
lubridate, hexbin, patchwork, ggrepel, GGally, ggfortify,
deldir, writexl, cowplot, DT, gutenbergr, tidytext, rvest,
Lahman, pdftools, HistData, titanic, BiocManager, waldo,
cluster, usethis, vdiffr, testthat (>= 3.0.0), covr
testthat, ggplot2, Rglpk, slam, xtable, magrittr
knitr, RODBC, roxygen2 (>= 5.0.0), rmarkdown, testthat, xml2
knitr, RODBC, roxygen2 (>= 5.0.0), rmarkdown, stringr,
testthat, xml2
knitr, microbenchmark, RODBC, roxygen2 (>= 5.0.0), rmarkdown,
stringr, testthat, xml2
knitr, RODBC, roxygen2 (>= 5.0.0), rmarkdown, stringr,
testthat (>= 0.11.1), xml2
knitr, roxygen2 (>= 5.0.0), rmarkdown, rticles, testthat (>=
0.11.1), tinytex, xml2
graphics, httr, jsonlite, knitr, magrittr, nhds, readxl,
rmarkdown (>= 1.11), RODBC, roxygen2 (>= 5.0.0), stats,
testthat (>= 0.11.1), utils, xml2
testthat, roxygen2, devtools, knitr, microbenchmark
testthat, roxygen2, devtools, knitr, microbenchmark, XML,
magrittr
testthat, knitr, microbenchmark, XML, magrittr, memoise,
profr, ggplot2
testthat, knitr, microbenchmark, magrittr, XML, memoise,
profr, ggplot2, digest
testthat, devtools, knitr, microbenchmark, magrittr, XML,
memoise, profr, ggplot2, digest, xtable, rmarkdown
testthat, devtools, knitr, microbenchmark, magrittr, XML,
memoise, profr, ggplot2, digest, xtable, rmarkdown, roxygen2
(>= 5.0.0)
testthat, knitr, rmarkdown, dplyr, rcmdcheck
checkmate (>= 2.0.0), testthat (>= 3.0.0), withr
interval, logspline, mixAK, bayesSurv, DPpackage, FHtest,
glrt, icenReg, frailtypack, MIICD, MLEcens, cubature, runjags,
coda, ICBayes, dynsurv
interval, logspline, mixAK, bayesSurv, FHtest, glrt, icenReg,
frailtypack, MIICD, MLEcens, cubature, runjags, coda, ICBayes,
dynsurv
interval, logspline, mixAK, bayesSurv, FHtest, icenReg,
frailtypack, MLEcens, cubature, runjags, coda, ICBayes, dynsurv
rmarkdown, knitr, plotly, testthat (>= 3.0.0)
shiny, keyring, knitr, rmarkdown, testthat (>= 3.0.0),
httptest, covr
arrow, bslib, covr, keyring, knitr, openssl, rmarkdown,
shiny, testthat (>= 3.0.0)
bslib, covr, keyring, knitr, openssl, rmarkdown, shiny,
testthat (>= 3.0.0)
covr, keyring, knitr, openssl, rmarkdown, shiny, testthat (>=
3.0.0)
shiny, openssl, keyring, knitr, rmarkdown, covr, testthat (>=
3.0.0)
keyring, openssl, shiny, covr, knitr, rmarkdown, testthat (>=
3.0.0)
keyring, openssl, covr, knitr, rmarkdown, testthat (>= 3.0.0)
keyring, covr, knitr, rmarkdown, testthat (>= 3.0.0)
ggplot2, knitr, rmarkdown, dplyr, kableExtra, data.tree,
dendextend
knitr, shiny, rmarkdown, pander, DT, shinythemes
rggobi, DendSer, cluster, RColorBrewer, datasets
ggpubr, ggtree, phytools, ggplot2, treeio, knitr, kableExtra,
prettydoc, rvcheck, rmarkdown, RCurl
ggpubr, ggtree, phytools, ggplot2, treeio, knitr, kableExtra,
prettydoc, rvcheck, badger, rmarkdown, RCurl
plyr, ggpubr, ggtree, phytools, ggplot2, treeio, knitr,
kableExtra, prettydoc, rvcheck, badger, rmarkdown, RCurl,
rentrez
plyr, ggpubr, ggtree, phytools, ggplot2, treeio, knitr,
kableExtra, prettydoc, rvcheck, badger, rmarkdown, RCurl
plyr, rmdformats, knitr, kableExtra, rvcheck, badger,
rmarkdown, RCurl, ggpubr, ggtree, phytools, ggplot2, treeio,
rentrez
plyr, rentrez, ggplot2, ggpubr, ggtree, phytools, treeio,
rmdformats, knitr, kableExtra, rvcheck, badger, rmarkdown,
RCurl
RCurl, ggpubr, ggtree, phytools, ggplot2, treeio
plyr, rentrez, ggplot2, ggpubr, ggtree, phytools, treeio,
rmdformats, knitr, kableExtra, rvcheck, badger, rmarkdown,
RCurl, shiny, shinydashboard
rentrez, ggplot2, ggpubr, ggtree, phytools, treeio,
rmdformats, knitr, kableExtra, rvcheck, badger, rmarkdown,
RCurl, shiny, shinydashboard
rentrez, ggplot2, ggpubr, ggtree, phytools, treeio,
rmdformats, knitr, kableExtra, rvcheck, badger, rmarkdown,
RCurl, shiny, shinydashboard, rhandsontable, gtools, rclipboard
rentrez, ggplot2, ggpubr, ggtree, phytools, treeio,
rmdformats, knitr, kableExtra, rvcheck, badger, rmarkdown,
RCurl, shiny, shinydashboard, rhandsontable, gtools,
rclipboard, clipr
rentrez, ggplot2, ggpubr, ggtree, phytools, treeio,
rmdformats, knitr, kableExtra, rvcheck, badger, rmarkdown,
RCurl, shiny, shinydashboard, rhandsontable, gtools,
rclipboard, clipr, shinyjs
ie2miscdata, iemisc, iemiscdata, Rcpp (>= 0.11.5), pracma
install.load, ie2misc, iemisc, iemiscdata, data.table (>=
1.9.4), USGSstates2k, spatstat, maptools, ggplot2, stringi,
qdap, lubridate, knitr, rmarkdown
install.load, ie2misc, iemisc, iemiscdata, data.table (>=
1.9.4), states2k, spatstat, maptools, ggplot2, stringi, qdap,
lubridate, knitr, rmarkdown
install.load, data.table (>= 1.10.2), USA.state.boundaries,
spatstat, rgdal, ggplot2 (>= 2.2.0), stringi, mgsub, knitr,
rmarkdown, maptools, sp
iemiscdata, Rcpp (>= 0.11.5), RcppOctave, rSymPy, NISTunits,
import, financial, optiRum
iemiscdata, Rcpp (>= 0.11.5), RcppOctave, NISTunits, import,
financial, optiRum
install.load, iemiscdata, Rcpp (>= 0.11.5), RcppOctave,
NISTunits, import, financial, optiRum, knitr, rmarkdown
install.load, iemiscdata, ie2misc, ie2miscdata, Rcpp (>=
0.11.5), RcppOctave, NISTunits, import, financial, optiRum,
knitr, rmarkdown
install.load, ie2misc, ie2miscdata, Rcpp (>= 0.11.5),
RcppOctave, NISTunits, financial, optiRum, rivr, knitr,
rmarkdown
install.load, ie2misc, Rcpp (>= 0.11.5), NISTunits,
financial, optiRum, rivr, knitr, rmarkdown, testthat, ramify
install.load, ie2misc, Rcpp (>= 0.11.5), NISTunits, optiRum,
rivr, knitr, rmarkdown, ramify
iemisc, rivr, rvest, data.table, stringi, qdap, knitr,
rmarkdown
install.load, iemisc, rivr, rvest, data.table, stringi, qdap,
knitr, rmarkdown
install.load, iemisc, ie2misc, ie2miscdata, rivr, rvest,
data.table, stringi, qdap, knitr, rmarkdown
testthat, roxygen2, knitr (>= 1.8), gridExtra, plyr, xtable
knitr, readr, xtable, kableExtra, pander, rmarkdown
testthat, knitr, rmarkdown, tibble, covr, ggplot2
countrycode (>= 1.1.0), dplyr (>= 1.0.2), tinytest, ggplot2,
knitr, rmarkdown
countrycode (>= 1.1.0), dplyr (>= 1.0.2), ggplot2, knitr,
rmarkdown, testthat (>= 3.0.0)
stats4, rgl, tcltk, RSQLite, digest, graph, Matrix
igraphdata, stats4, rgl, tcltk, graph, Matrix, ape
igraphdata, stats4, rgl, tcltk, graph, Matrix, ape, XML,
jpeg, png
igraphdata, stats4, rgl, tcltk, graph, ape, Matrix
igraphdata, stats4, rgl, tcltk, graph, ape
igraphdata, stats4, rgl, tcltk, graph, ape, scales
ape, graph, igraphdata, NMF, rgl, scales, stats4, tcltk,
testthat
ape, graph, igraphdata, rgl, scales, stats4, tcltk, testthat
ape, graph, igraphdata, rgl, scales, stats4, tcltk, testthat,
withr, digest
ape, digest, graph, igraphdata, rgl, scales, stats4, tcltk,
testthat
ape, digest, graph, igraphdata, rgl, scales, stats4, tcltk,
testthat, withr
metR, ggplot2, rnaturalearth, rnaturalearthdata, rmarkdown,
covr, testthat, knitr
htmltools, datasets, shiny, testthat, rmarkdown, reshape2,
roxygen2, covr, webshot
testthat, kableExtra, knitr, DT, leaflet
testthat, kableExtra, knitr, DT, leaflet, remotes,
modelsummary, gt
testthat, knitr, rmarkdown, MASS, parallel
knitr, testthat, rmarkdown, covr, magick, abind, tiff
knitr, testthat, rmarkdown, covr, magick, abind, tiff,
EBImage, rprojroot
knitr, testthat, rmarkdown, covr, magick, abind, tiff,
EBImage, spelling
knitr, testthat (>= 2.1.0), rmarkdown, covr, magick, abind,
tiff, EBImage, spelling, pacman
knitr, testthat (>= 2.1.0), rmarkdown, covr, abind, tiff,
EBImage, spelling, pacman
abind, covr, EBImage, knitr, pacman, rmarkdown, spelling,
testthat (>= 2.1.0), tiff
abind, covr, EBImage, knitr, pacman, rmarkdown, rprojroot,
spelling, testthat (>= 2.1.0), tiff, vdiffr
abind, covr, EBImage, knitr, pacman, rmarkdown, rprojroot,
spelling, testthat (>= 2.1), tiff, vdiffr
abind, covr, EBImage, knitr, mockery, pacman, rmarkdown,
rprojroot, spelling, testthat (>= 2.1), tiff, vdiffr
grid, ggplot2, scales, shiny, testthat, knitr, rmarkdown
grid, ggplot2, scales, shiny, testthat, mockery, knitr,
rmarkdown
grid, ggplot2, scales, shiny, testthat, mockery, knitr,
rmarkdown, furrr, future, pbmcapply, tictoc, dplyr
testthat (>= 2.0.0), knitr, rmarkdown, tesseract
testthat, C50, knitr, rmarkdown, FNN, smotefamily
testthat, knitr, rmarkdown, dplyr, tidyr
ALEPlot, bench, caret, covr, e1071, future.callr, glmnet,
gower, h2o, keras, knitr, MASS, mlr, mlr3, party, partykit,
patchwork, randomForest, ranger, rmarkdown, rpart, testthat,
yaImpute
ALEPlot, bench, caret, covr, e1071, future.callr, glmnet,
gower, h2o, knitr, MASS, mlr, mlr3, party, partykit, patchwork,
randomForest, ranger, rmarkdown, rpart, testthat, yaImpute
ALEPlot, bench, bit64, caret, covr, e1071, future.callr,
glmnet, gower, h2o, keras (>= 2.2.5.0), knitr, MASS, mlr, mlr3,
party, partykit, patchwork, randomForest, ranger, rmarkdown,
rpart, testthat, yaImpute
randomForest, gower, testthat, rpart, MASS, caret, e1071,
lime, mlr
randomForest, gower, testthat, rpart, MASS, caret, e1071,
lime, mlr, covr
randomForest, gower, testthat, rpart, MASS, caret, e1071,
lime, mlr, covr, knitr, rmarkdown
randomForest, gower, testthat, rpart, MASS, caret, e1071,
knitr, lime, mlr, covr, rmarkdown, devtools, doParallel
randomForest, gower, testthat, rpart, MASS, caret, e1071,
knitr, mlr, covr, rmarkdown, devtools, doParallel, ALEPlot,
ranger
knitr (>= 1.8), roxygen2 (>= 3.0.0), testthat (>= 2.1.0),
pkgdown (>= 0.1.0), assertthat, rmarkdown
testthat (>= 3.0.0), rvest, devtools, covr, rmarkdown, knitr
accdata, covr, knitr, rmarkdown, testthat (>= 3.0.0)
testthat (>= 2.1.0), knitr, rmarkdown, tableHTML, data.table
testthat (>= 2.1.0), knitr, rmarkdown, tableHTML, data.table,
spelling
Lahman (>= 3.0-1), odbc, RJDBC, nycflights13, testthat
Lahman (>= 3.0-1), odbc, RJDBC, rJava (>= 0.4-15),
nycflights13, testthat
Lahman (>= 3.0-1), lubridate, odbc, RJDBC, rJava (>= 0.4-15),
nycflights13, stringr, testthat
tidyverse, knitr, rmarkdown, testthat (>= 2.1.0)
knitr, rmarkdown, testthat (>= 3.0.0), devtools
bookdown, knitr, ggplot2, prettydoc, rmarkdown, R.rsp,
testthat, xts
knitr, ggplot2, prettydoc, rmarkdown, R.rsp, testthat, xts
testthat, rda, caret, glmnet, pls, Cubist, ridge, gbm,
mboost, rpart, earth
testthat, caret, glmnet, pls, Cubist, ridge, gbm, mboost,
rpart, earth
testthat, utils, zoo, timeSeries, tis, xts
testthat, R.rsp, zoo, timeSeries, tis, xts, tibble, tsibble
testthat, R.rsp, knitr, zoo, timeSeries, tis, xts, tibble,
tsibble, rmarkdown
testthat, R.rsp, knitr, zoo, timeSeries, tis, xts, tibble,
tsibble, rmarkdown, covr
htmltools, knitr, rmarkdown, pander, testthat, xml2
htmltools, knitr, rmarkdown, pander, testthat, xml2, tools,
dplyr
htmltools, knitr, rmarkdown, pander, testthat, xml2, tools,
dplyr, tibble
testthat (>= 0.10.0), knitr, rmarkdown, covr
cli, covr, crayon, dplyr, nombre, stringi, testthat
covr, crayon, dplyr, nombre, stringi, testthat (>= 3.0.0)
covr, crayon, dplyr, nombre, stringi, testthat (>= 3.0.0),
tibble
outbreaks, testthat, covr, knitr, rmarkdown, scales
outbreaks, testthat, covr, knitr, rmarkdown, scales, plotly
outbreaks, testthat, vdiffr, covr, knitr, rmarkdown, scales
magrittr, outbreaks, testthat, vdiffr, covr, knitr,
rmarkdown, scales
magrittr, outbreaks, testthat, vdiffr, covr, knitr,
rmarkdown, scales, cowplot
outbreaks, testthat, knitr, rmarkdown, covr
outbreaks, knitr, rmarkdown, covr, testthat
outbreaks, knitr, rmarkdown, covr, testthat, dplyr (>=
1.0.0), scales, roxygen2, ggplot2, magrittr
outbreaks, knitr, rmarkdown, testthat, dplyr (>= 1.0.0),
scales, roxygen2, ggplot2, magrittr, covr
outbreaks, knitr, rmarkdown, testthat, scales, roxygen2,
ggplot2, magrittr, covr, zoo
boot, cowplot, future.callr, knitr, testthat (>= 3.0.0)
boot, future.callr, ggplot2 (>= 3.3), knitr, testthat (>=
3.0.0)
callr, knitr (>= 1.12), rcmdcheck, rmarkdown, spelling,
testthat (>= 3.0.0)
ggplot2, knitr, mockery, rmarkdown, reshape2, pkgdown,
testthat (>= 2.1.0)
ggplot2, knitr, mockery, rmarkdown, pkgdown, testthat (>=
2.1.0)
ggplot2, knitr, mockery, rmarkdown, pkgdown, testthat (>=
2.1.0), xml2, bench
glue, tibble, stringr, scales, purrr, janitor, patchwork,
forcats, broom, viridis, learnr, DoE.base, qcc, car, qicharts2,
rsm, ggforce, ggraph, tidygraph, igraph, bookdown, rmarkdown,
knitr, agricolae, RcmdrMisc, gt, skimr, ggtext
broom, knitr, rmarkdown, nycflights13, stringr, testthat,
covr
broom, devtools (>= 1.12.0), knitr, rmarkdown, nycflights13,
stringr, testthat, covr
broom, devtools (>= 1.12.0), knitr, rmarkdown, nycflights13,
stringr, testthat, covr, vdiffr
broom, devtools (>= 1.12.0), knitr, tidyr, rmarkdown,
nycflights13, stringr, testthat, covr, vdiffr
broom, devtools (>= 1.12.0), knitr, tidyr, rmarkdown,
nycflights13, stringr, testthat, covr, vdiffr, fs
broom, covr, devtools (>= 1.12.0), fs, knitr, nycflights13,
rmarkdown, stringr, testthat, tidyr, vdiffr
covr, devtools (>= 1.12.0), fs, knitr, nycflights13,
rmarkdown, stringr, testthat, vdiffr (>= 1.0.0)
covr, devtools (>= 1.12.0), fs, knitr, nycflights13,
rmarkdown, stringr, testthat, vdiffr (>= 1.0.0), parsnip
covr, jsonlite, knitr, lubridate, readr, readxl, rmarkdown,
scales, shinyBS, shinythemes, stringr, testthat, tools
covr, descriptr, haven, jsonlite, knitr, lubridate, readr,
readxl, rmarkdown, scales, shinyBS, shinythemes, stringr,
testthat, tools
covr, knitr, rmarkdown, testthat, xplorerr
Hmisc (>= 4.3-0), mgcv (>= 1.8-31), nortest (>= 1.0-4), NNS
(>= 0.4.7.1), parallel, shiny, shinythemes, shinyWidgets,
shinyjs, shinycssloaders, colourpicker, DT, knitr, rmarkdown
Hmisc (>= 4.3-0), mgcv (>= 1.8-31), nortest (>= 1.0-4), NNS
(>= 0.4.7.1), parallel, shiny, shinythemes, shinyWidgets,
shinyjs, shinycssloaders, colourpicker, magrittr, DT, knitr,
rmarkdown
testthat, knitr, rmarkdown, dplyr, magrittr
testthat, knitr, rmarkdown, dbplyr, magrittr
gbm, gower, randomForest, titanic, xgboost, testthat, dplyr,
r2d3, ggpubr, jsonlite
gower, randomForest, xgboost, testthat, r2d3, ggpubr,
jsonlite, knitr, rmarkdown
DALEX, gower, randomForest, testthat, r2d3, jsonlite, knitr,
rmarkdown, covr
DALEX, gower, ranger, testthat, r2d3, jsonlite, knitr,
rmarkdown, covr
testthat, ggmap, rgl, sphereplot, raster, Matrix, dplyr,
maptools, mgcv, shiny, spatstat, spatstat.data, RColorBrewer,
graphics
testthat, ggmap, rgl, sphereplot, raster, dplyr, maptools,
mgcv, shiny, spatstat, spatstat.data, RColorBrewer, graphics,
INLA, knitr, rmarkdown
testthat, ggmap, rgl, sphereplot, raster, Matrix, dplyr,
maptools, mgcv, shiny, spatstat, spatstat.data, RColorBrewer,
graphics, INLA,
covr, dplyr, ggmap, ggpolypath, graphics, INLA (>= 20.06.18),
knitr, maptools, mgcv, patchwork, raster, RColorBrewer, rgl,
rmarkdown, shiny, sn, spatstat.geom, spatstat.core,
spatstat.data, spatstat (>= 2.0-0), sphereplot, testthat
covr, dplyr, ggmap, ggplot2, ggpolypath, graphics, INLA (>=
21.08.31), knitr, maptools, mgcv, patchwork, raster,
RColorBrewer, rgl, rmarkdown, shiny, sn, spatstat.geom,
spatstat.core, spatstat.data, spatstat (>= 2.0-0), sphereplot,
testthat
covr, dplyr, ggmap, ggplot2, ggpolypath, graphics, INLA (>=
21.08.31), knitr, maps, maptools, mgcv, raster, RColorBrewer,
rgl, rmarkdown, scales, sf, shiny, sn, spatstat.geom,
spatstat.core, spatstat.data, spatstat (>= 2.0-0), sphereplot,
splancs, testthat, tidyr
covr, dplyr, ggmap, ggplot2, ggpolypath, graphics, INLA (>=
21.08.31), knitr, maps, maptools, mgcv, raster, RColorBrewer,
rgl, rmarkdown, scales, shiny, sn, spatstat.geom,
spatstat.core, spatstat.data, spatstat (>= 2.0-0), sphereplot,
splancs, terra, testthat, tidyr, DiagrammeR
dataRetrieval, inlmisc, knitr, maptools, rgdal, rgeos, stats,
tools, utils
colorspace, devtools, githubinstall, maptools, roxygen2,
testthat
colorspace, devtools, githubinstall, httr, maptools,
roxygen2, testthat
colorspace, devtools, doParallel, doRNG, githubinstall, httr,
maptools, parallel, roxygen2, testthat
colorspace, devtools, doParallel, doRNG, githubinstall, httr,
maptools, parallel, testthat
colorspace, devtools, doParallel, doRNG, githubinstall, httr,
maps, maptools, testthat
devtools, doParallel, doRNG, githubinstall, gstat, roxygen2,
testthat, viridisLite
devtools, dichromat, doParallel, doRNG, githubinstall, gstat,
roxygen2, testthat
devtools, dichromat, doParallel, doRNG, githubinstall, gstat,
httr, roxygen2, testthat
alphahull, dichromat, doParallel, doRNG, githubinstall,
gstat, maptools, remotes, roxygen2, testthat
alphahull, dichromat, doParallel, doRNG, gstat, maptools,
remotes, roxygen2, testthat
alphahull, dichromat, doParallel, doRNG, grid, gstat,
maptools, png, remotes, roxygen2, testthat
covr, DT, graphics, inlmisc, kableExtra, knitr, pkgdown,
rmarkdown, RWeka, stringi, textutils, testthat, tools, usethis,
utils
connectapi, covr, DT, graphics, grid, htmltools, htmlwidgets,
kableExtra, knitr, pkgdown, png, rmarkdown, rsconnect, RWeka,
stringi, textutils, tinytest, tools, usethis, utils, webshot2,
wordcloud2
keras, knitr, neuralnet, plotly, rmarkdown, tensorflow,
testthat (>= 3.0.0)
covr, keras, knitr, neuralnet, plotly, rmarkdown, tensorflow,
testthat (>= 3.0.0)
knitr, rmarkdown, testthat (>= 3.0.0), purrr, pracma
knitr, rmarkdown, testthat (>= 3.0.0), purrr, pracma, fHMM
testthat (>= 2.1.0), purrr, knitr, rmarkdown, dplyr,
nycflights13
corrplot, dplyr, knitr, rmarkdown, testthat
tidyverse, prettydoc, htmltools, kableExtra, knitr,
rmarkdown, magrittr, testthat, covr, png
tidyverse, prettydoc, htmltools, kableExtra, knitr,
rmarkdown, markdown, magrittr, testthat, covr, png
tidyverse, lubridate, prettydoc, htmltools, kableExtra,
knitr, rmarkdown, markdown, magrittr, testthat, covr, png
AER, betareg, brms, coxme, gam, gamm4, gee, GLMMadaptive,
glmmTMB, gmnl, lfe, MASS, MCMCglmm, mlogit, lme4, mgcv, nnet,
nlme, ordinal, plm, pscl, rstanarm, splines, survey, survival,
truncreg, testthat, VGAM
AER, afex, aod, BayesFactor, bayestestR, betareg, BGGM,
biglm, blavaan, blme, bbmle, brms, censReg, cgam, coxme, cplm,
crch, effectsize, emmeans, estimatr, feisr, fixest, gam, gamm4,
gamlss, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, httr,
lavaan, lfe, logistf, MASS, Matrix, MCMCglmm, mice, mlogit,
multgee, lme4, mgcv, nnet, nlme, ordinal, parameters, plm,
pscl, quantreg, rms, robustbase, robustlmm, rstanarm,
rstudioapi, speedglm, splines, statmod, survey, survival,
tripack, truncreg, testthat, VGAM, knitr, rmarkdown, spelling
AER, afex, aod, BayesFactor, bayestestR, betareg, BGGM,
biglm, blavaan, blme, bbmle, brms, censReg, cgam, coxme, cplm,
crch, effectsize, emmeans, estimatr, feisr, fixest, gam, gamm4,
gamlss, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, httr,
ivreg, JM, lavaan, lfe, logistf, MASS, Matrix, MCMCglmm, mice,
mlogit, multgee, lme4, mgcv, nnet, nlme, ordinal, parameters,
plm, pscl, quantreg, rms, robustbase, robustlmm, rstanarm,
rstudioapi, speedglm, splines, statmod, survey, survival,
tripack, truncreg, testthat, VGAM, knitr, rmarkdown, spelling
AER, afex, aod, BayesFactor, bayestestR, betareg, BGGM,
biglm, blavaan, blme, bbmle, brms, censReg, cgam, coxme, cplm,
crch, effectsize, emmeans, estimatr, feisr, fixest, gam, gamm4,
gamlss, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, httr,
ivreg, JM, lavaan, logistf, MASS, Matrix, MCMCglmm, metaBMA,
mice, mlogit, multgee, lme4, mgcv, nnet, nlme, ordinal,
parameters, performance, plm, pscl, quantreg, rms, robustbase,
robustlmm, rstanarm, rstudioapi, speedglm, splines, statmod,
survey, survival, tripack, truncreg, testthat, VGAM, knitr,
rmarkdown, spelling
AER, afex, aod, BayesFactor, bayestestR, bdsmatrix, betareg,
BGGM, biglm, blavaan, blme, bbmle, brms, censReg, cgam, coxme,
cplm, crch, effectsize, emmeans, estimatr, feisr, fixest, gam,
gamm4, gamlss, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl,
gt, httr, ivreg, JM, lavaan, lmtest, logistf, MASS, Matrix,
MCMCglmm, metaBMA, mice, mlogit, multgee, nonnest2, lme4, mgcv,
nnet, nlme, ordinal, parameters, performance, plm, pscl,
quantreg, rms, robustbase, robustlmm, rstanarm, rstudioapi,
speedglm, splines, statmod, survey, survival, tripack,
truncreg, testthat, VGAM, knitr, rmarkdown, spelling
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, BGGM, biglm, blavaan, blme, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, dplyr, effectsize, emmeans,
estimatr, feisr, fixest, gam, gamlss, gamm4, gbm, gee, geepack,
GLMMadaptive, glmmTMB, gmnl, gt, httr, ivreg, JM, knitr,
lavaan, lfe, lme4, lmtest, logistf, MASS, Matrix, mclust,
MCMCglmm, merTools, metaBMA, mgcv, mice, mlogit, multgee, nlme,
nnet, nonnest2, ordinal, panelr, parameters, parsnip,
performance, plm, pscl, quantreg, rmarkdown, rms, robustbase,
robustlmm, rstanarm, rstudioapi, sandwich, speedglm, spelling,
splines, statmod, survey, survival, testthat, tripack,
truncreg, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, BGGM, biglm, blavaan, blme, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, dplyr, effectsize, emmeans,
estimatr, feisr, fixest, gam, gamlss, gamm4, gbm, gee, geepack,
GLMMadaptive, glmmTMB, gmnl, gt, httr, ivreg, JM, knitr,
lavaan, lfe, lme4, lmtest, logistf, MASS, Matrix, mclust,
MCMCglmm, merTools, metaBMA, mgcv, mice, mlogit, multgee, nlme,
nnet, nonnest2, ordinal, panelr, parameters, parsnip,
performance, plm, pscl, quantreg, rmarkdown, rms, robustbase,
robustlmm, rstanarm (>= 2.21.1), rstudioapi, sandwich,
speedglm, spelling, splines, statmod, survey, survival,
testthat, tripack, truncreg, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, BGGM, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, dplyr, effectsize, emmeans,
estimatr, feisr, fixest, gam, gamlss, gamm4, gbm, gee, geepack,
GLMMadaptive, glmmTMB, gmnl, gt, httr, ivreg, JM, knitr,
lavaan, lfe, lme4, lmtest, logistf, MASS, Matrix, mclust,
MCMCglmm, merTools, metaBMA, mgcv, mice, mlogit, multgee, nlme,
nnet, nonnest2, ordinal, panelr, parameters, parsnip,
performance, plm, pscl, quantreg, rmarkdown, rms, robustbase,
robustlmm, rstanarm (>= 2.21.1), rstantools, rstudioapi,
sandwich, speedglm, spelling, splines, statmod, survey,
survival, testthat, tripack, truncreg, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, BGGM, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, dplyr, effectsize, emmeans,
estimatr, feisr, fixest, fungible, gam, gamlss, gamm4, gbm,
gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt, httr, ivreg, JM,
knitr, lavaan, lfe, lme4, lmtest, logistf, MASS, Matrix,
mclust, MCMCglmm, merTools, metaBMA, mgcv, mice, mlogit,
multgee, nlme, nnet, nonnest2, ordinal, panelr, parameters,
parsnip, performance, plm, pscl, psych, quantreg, rmarkdown,
rms, robustbase, robustlmm, rstanarm (>= 2.21.1), rstantools,
rstudioapi, sandwich, speedglm, spelling, splines, statmod,
survey, survival, testthat, tripack, truncreg, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, BGGM, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, dplyr, effectsize, emmeans,
epiR, estimatr, feisr, fixest, fungible, gam, gamlss, gamm4,
gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt, httr,
ivreg, JM, knitr, lavaan, lfe, lme4, lmtest, logistf, MASS,
Matrix, mclust, MCMCglmm, merTools, metaBMA, mgcv, mice,
mlogit, multgee, nlme, nnet, nonnest2, ordinal, panelr,
parameters, parsnip, performance, plm, pscl, psych, quantreg,
rmarkdown, rms, robustbase, robustlmm, rstanarm (>= 2.21.1),
rstantools, rstudioapi, sandwich, speedglm, spelling, splines,
statmod, survey, survival, testthat, tripack, truncreg, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, dplyr, effectsize, emmeans,
epiR, estimatr, feisr, fixest, fungible, gam, gamlss, gamm4,
gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt, httr,
ivreg, JM, knitr, lavaan, lfe, lme4, lmtest, logistf, MASS,
Matrix, mclust, MCMCglmm, merTools, metaBMA, mgcv, mice,
mlogit, multgee, nlme, nnet, nonnest2, ordinal, panelr,
parameters, parsnip, performance, plm, pscl, psych, quantreg,
rmarkdown, rms, robustbase, robustlmm, rstanarm (>= 2.21.1),
rstantools, rstudioapi, sandwich, speedglm, spelling, splines,
statmod, survey, survival, testthat, tripack, truncreg, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, bife, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, dplyr, effectsize, emmeans,
epiR, estimatr, feisr, fixest, fungible, gam, gamlss, gamm4,
gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt, httr,
ivreg, JM, knitr, lavaan, lfe, lme4, lmtest, logistf, MASS,
Matrix, mclust, MCMCglmm, merTools, metaBMA, mgcv, mice,
mlogit, multgee, nlme, nnet, nonnest2, ordinal, panelr,
parameters, parsnip, performance, plm, pscl, psych, quantreg,
rmarkdown, rms, robustbase, robustlmm, rstanarm (>= 2.21.1),
rstantools, rstudioapi, sandwich, speedglm, spelling, splines,
statmod, survey, survival, testthat, tripack, truncreg, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, bife, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, datawizard, effectsize,
emmeans, epiR, estimatr, feisr, fixest, fungible, gam, gamlss,
gamm4, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt,
httr, ivreg, JM, knitr, lavaan, lfe, lme4, lmtest, logistf,
MASS, Matrix, mclust, MCMCglmm, merTools, metaBMA, mgcv, mice,
mlogit, multgee, nlme, nnet, nonnest2, ordinal, panelr,
parameters, parsnip, performance, plm, poorman, pscl, psych,
quantreg, rmarkdown, rms, robustbase, robustlmm, rstanarm (>=
2.21.1), rstantools, rstudioapi, sandwich, speedglm, spelling,
splines, statmod, survey, survival, testthat, tripack,
truncreg, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, bife, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, datawizard, effectsize,
emmeans, epiR, estimatr, feisr, fixest, fungible, gam, gamlss,
gamm4, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt,
httr, ivreg, JM, knitr, lavaan, lfe, lme4, lmtest, logistf,
MASS, marginaleffects, Matrix, mclust, MCMCglmm, merTools,
metaBMA, mgcv, mice, mlogit, multgee, nlme, nnet, nonnest2,
ordinal, panelr, parameters, parsnip, performance, plm,
poorman, pscl, psych, quantreg, rmarkdown, rms, robustbase,
robustlmm, rstanarm (>= 2.21.1), rstantools, rstudioapi,
sandwich, speedglm, spelling, splines, statmod, survey,
survival, testthat, tripack, truncreg, tweedie, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, bife, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, datawizard, effectsize,
emmeans, epiR, estimatr, feisr, fixest, fungible, gam, gamlss,
gamm4, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt,
httr, ivreg, JM, knitr, lavaan, lfe, lme4, lmerTest, lmtest,
logistf, MASS, marginaleffects, Matrix, mclust, MCMCglmm,
merTools, metaBMA, mgcv, mice, mlogit, mhurdle, multgee, nlme,
nnet, nonnest2, ordinal, panelr, parameters, parsnip, pbkrtest,
performance, plm, poorman, pscl, psych, quantreg, rmarkdown,
rms, robustbase, robustlmm, rstanarm (>= 2.21.1), rstantools,
rstudioapi, sandwich, speedglm, spelling, splines, statmod,
survey, survival, testthat, tripack, truncreg, tweedie, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, bife, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, datawizard, effectsize,
emmeans, epiR, estimatr, feisr, fixest, fungible, gam, gamlss,
gamm4, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt,
httr, ivreg, JM, knitr, lavaan, lfe, lme4, lmerTest, lmtest,
logistf, MASS, marginaleffects, Matrix, mclust, MCMCglmm,
merTools, metaBMA, mgcv, mice, mlogit, mhurdle, multgee, nlme,
nnet, nonnest2, ordinal, panelr, parameters, parsnip, pbkrtest,
performance, plm, poorman, pscl, psych, quantreg, rmarkdown,
rms, robustbase, robustlmm, rstanarm (>= 2.21.1), rstantools,
rstudioapi, sandwich, speedglm, splines, statmod, survey,
survival, testthat, tripack, truncreg, tweedie, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, bife, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, datawizard, effectsize,
emmeans, epiR, estimatr, feisr, fixest, fungible, gam, gamlss,
gamm4, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt,
httr, ivreg, JM, knitr, lavaan, lfe, lme4, lmerTest, lmtest,
logistf, MASS, marginaleffects, Matrix, mclust, MCMCglmm,
merTools, metaBMA, mgcv, mice, mlogit, mhurdle, multgee, nlme,
nnet, nonnest2, ordinal, panelr, parameters, parsnip, pbkrtest,
performance, plm, poorman, pscl, psych, quantreg, rmarkdown,
rms, robustbase, robustlmm, rstanarm (>= 2.21.1), rstantools,
rstudioapi, sandwich, speedglm, splines, statmod, survey,
survival, testthat, truncreg, tweedie, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, bife, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, datawizard, effectsize,
emmeans, epiR, estimatr, feisr, fixest, fungible, gam, gamlss,
gamm4, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt,
httr, ivreg, JM, knitr, lavaan, lfe, lme4, lmerTest, lmtest,
logistf, MASS, marginaleffects, Matrix, mclogit, mclust,
MCMCglmm, merTools, metaBMA, mgcv, mice, mlogit, mhurdle,
multgee, nlme, nnet, nonnest2, ordinal, panelr, parameters,
parsnip, pbkrtest, performance, plm, poorman, pscl, psych,
quantreg, rmarkdown, rms, robustbase, robustlmm, rstanarm (>=
2.21.1), rstantools, rstudioapi, sandwich, speedglm, splines,
statmod, survey, survival, testthat, truncreg, tweedie, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, bife, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, datawizard, effectsize,
emmeans, epiR, estimatr, feisr, fixest, fungible, gam, gamlss,
gamm4, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt,
httr, ivreg, JM, knitr, lavaan, lavaSearch2, lfe, lme4,
lmerTest, lmtest, logistf, MASS, marginaleffects, Matrix,
mclogit, mclust, MCMCglmm, merTools, metaBMA, mgcv, mice,
mlogit, mhurdle, multgee, nlme, nnet, nonnest2, ordinal,
panelr, parameters, parsnip, pbkrtest, performance, plm,
poorman, pscl, psych, quantreg, rmarkdown, rms, robustbase,
robustlmm, rstanarm (>= 2.21.1), rstantools, rstudioapi,
sandwich, speedglm, splines, statmod, survey, survival,
testthat, truncreg, tweedie, VGAM
AER, afex, aod, BayesFactor, bayestestR, bbmle, bdsmatrix,
betareg, bife, biglm, blavaan, blme, boot, brms, censReg, cgam,
clubSandwich, coxme, cplm, crch, datawizard, effectsize,
emmeans, epiR, estimatr, feisr, fixest, fungible, gam, gamlss,
gamm4, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl, gt,
httr, ivreg, JM, knitr, lavaan, lavaSearch2, lfe, lme4,
lmerTest, lmtest, logistf, logitr, MASS, marginaleffects,
Matrix, mclogit, mclust, MCMCglmm, merTools, metaBMA, mgcv,
mice, mlogit, mhurdle, multgee, nlme, nnet, nonnest2, ordinal,
panelr, parameters, parsnip, pbkrtest, performance, plm,
poorman, pscl, psych, quantreg, rmarkdown, rms, robustbase,
robustlmm, rstanarm (>= 2.21.1), rstantools, rstudioapi,
sandwich, speedglm, splines, statmod, survey, survival,
testthat, truncreg, tweedie, VGAM
AER, afex, betareg, blme, brms, crch, coxme, estimatr, gam,
gamm4, gamlss, gee, geepack, GLMMadaptive, glmmTMB, gmnl, httr,
lfe, logistf, MASS, MCMCglmm, mlogit, lme4, mgcv, nnet, nlme,
ordinal, plm, pscl, quantreg, rms, robust, robustbase,
robustlmm, rstanarm, rstudioapi, splines, survey, survival,
truncreg, testthat, VGAM
AER, afex, BayesFactor, betareg, biglm, blme, brms, censReg,
crch, coxme, covr, estimatr, feisr, gam, gamm4, gamlss, gbm,
gee, geepack, GLMMadaptive, glmmTMB, gmnl, httr, lfe, logistf,
MASS, MCMCglmm, mlogit, multgee, lme4, mgcv, nnet, nlme,
ordinal, plm, pscl, quantreg, rms, robust, robustbase,
robustlmm, rstanarm, rstudioapi, speedglm, splines, survey,
survival, truncreg, testthat, VGAM, knitr, rmarkdown
AER, afex, aod, BayesFactor, bayestestR, betareg, biglm,
blme, brms, censReg, crch, coxme, covr, estimatr, feisr, gam,
gamm4, gamlss, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl,
HRQoL, httr, lfe, logistf, MASS, MCMCglmm, mlogit, multgee,
lme4, mgcv, nnet, nlme, ordinal, panelr, plm, pscl, quantreg,
rms, robust, robustbase, robustlmm, rstanarm, rstudioapi,
speedglm, splines, survey, survival, truncreg, testthat, VGAM,
knitr, rmarkdown
AER, afex, aod, BayesFactor, bayestestR, betareg, biglm,
blme, brms, censReg, crch, coxme, covr, estimatr, feisr, gam,
gamm4, gamlss, gbm, gee, geepack, GLMMadaptive, glmmTMB, gmnl,
HRQoL, httr, lfe, logistf, MASS, MCMCglmm, mlogit, multgee,
lme4, mgcv, nnet, nlme, ordinal, panelr, plm, pscl, quantreg,
rms, robust, robustbase, robustlmm, rstanarm, rstudioapi,
speedglm, splines, survey, survival, truncreg, testthat, VGAM,
knitr, rmarkdown, spelling
AER, afex, aod, BayesFactor, bayestestR, betareg, biglm,
blavaan, blme, brms, censReg, crch, coxme, estimatr, feisr,
gam, gamm4, gamlss, gbm, gee, geepack, GLMMadaptive, glmmTMB,
gmnl, HRQoL, httr, lavaan, lfe, logistf, MASS, Matrix,
MCMCglmm, mlogit, multgee, lme4, mgcv, nnet, nlme, ordinal,
panelr, plm, pscl, quantreg, rms, robust, robustbase,
robustlmm, rstanarm, rstudioapi, speedglm, splines, survey,
survival, truncreg, testthat, VGAM, knitr, rmarkdown, spelling
AER, afex, aod, BayesFactor, bayestestR, betareg, biglm,
blavaan, blme, brms, censReg, crch, coxme, estimatr, feisr,
fixest, gam, gamm4, gamlss, gbm, gee, geepack, GLMMadaptive,
glmmTMB, gmnl, HRQoL, httr, lavaan, lfe, logistf, MASS, Matrix,
MCMCglmm, mlogit, multgee, lme4, mgcv, nnet, nlme, ordinal,
panelr, plm, pscl, quantreg, rms, robust, robustbase,
robustlmm, rstanarm, rstudioapi, speedglm, splines, survey,
survival, truncreg, testthat, VGAM, knitr, rmarkdown, spelling
AER, afex, aod, BayesFactor, bayestestR, betareg, biglm,
blavaan, blme, brms, censReg, cgam, coxme, cplm, crch,
estimatr, feisr, fixest, gam, gamm4, gamlss, gbm, gee, geepack,
GLMMadaptive, glmmTMB, gmnl, HRQoL, httr, lavaan, lfe, logistf,
MASS, Matrix, MCMCglmm, mlogit, multgee, lme4, mgcv, nnet,
nlme, ordinal, panelr, plm, pscl, quantreg, rms, robustbase,
robustlmm, rstanarm, rstudioapi, speedglm, splines, statmod,
survey, survival, tripack, truncreg, testthat, VGAM, knitr,
rmarkdown, spelling
AER, afex, aod, BayesFactor, bayestestR, betareg, biglm,
blavaan, blme, brms, censReg, cgam, coxme, cplm, crch,
estimatr, feisr, fixest, gam, gamm4, gamlss, gbm, gee, geepack,
GLMMadaptive, glmmTMB, gmnl, httr, lavaan, lfe, logistf, MASS,
Matrix, MCMCglmm, mlogit, multgee, lme4, mgcv, nnet, nlme,
ordinal, panelr, plm, pscl, quantreg, rms, robustbase,
robustlmm, rstanarm, rstudioapi, speedglm, splines, statmod,
survey, survival, tripack, truncreg, testthat, VGAM, knitr,
rmarkdown, spelling
AER, afex, aod, BayesFactor, bayestestR, betareg, biglm,
blavaan, blme, brms, censReg, cgam, coxme, cplm, crch,
estimatr, feisr, fixest, gam, gamm4, gamlss, gbm, gee, geepack,
GLMMadaptive, glmmTMB, gmnl, httr, lavaan, lfe, logistf, MASS,
Matrix, MCMCglmm, mlogit, multgee, lme4, mgcv, nnet, nlme,
ordinal, plm, pscl, quantreg, rms, robustbase, robustlmm,
rstanarm, rstudioapi, speedglm, splines, statmod, survey,
survival, tripack, truncreg, testthat, VGAM, knitr, rmarkdown,
spelling
AER, afex, aod, BayesFactor, bayestestR, betareg, BGGM,
biglm, blavaan, blme, brms, censReg, cgam, coxme, cplm, crch,
estimatr, feisr, fixest, gam, gamm4, gamlss, gbm, gee, geepack,
GLMMadaptive, glmmTMB, gmnl, httr, lavaan, lfe, logistf, MASS,
Matrix, MCMCglmm, mlogit, multgee, lme4, mgcv, nnet, nlme,
ordinal, panelr, plm, pscl, quantreg, rms, robustbase,
robustlmm, rstanarm, rstudioapi, speedglm, splines, statmod,
survey, survival, tripack, truncreg, testthat, VGAM, knitr,
rmarkdown, spelling
AER, afex, aod, BayesFactor, bayestestR, betareg, BGGM,
biglm, blavaan, blme, bbmle, brms, censReg, cgam, coxme, cplm,
crch, estimatr, feisr, fixest, gam, gamm4, gamlss, gbm, gee,
geepack, GLMMadaptive, glmmTMB, gmnl, httr, lavaan, lfe,
logistf, MASS, Matrix, MCMCglmm, mlogit, multgee, lme4, mgcv,
nnet, nlme, ordinal, panelr, plm, pscl, quantreg, rms,
robustbase, robustlmm, rstanarm, rstudioapi, speedglm, splines,
statmod, survey, survival, tripack, truncreg, testthat, VGAM,
knitr, rmarkdown, spelling
AER, afex, aod, BayesFactor, bayestestR, betareg, BGGM,
biglm, blavaan, blme, bbmle, brms, censReg, cgam, coxme, cplm,
crch, estimatr, feisr, fixest, gam, gamm4, gamlss, gbm, gee,
geepack, GLMMadaptive, glmmTMB, gmnl, httr, lavaan, lfe,
logistf, MASS, Matrix, MCMCglmm, mlogit, multgee, lme4, mgcv,
nnet, nlme, ordinal, plm, pscl, quantreg, rms, robustbase,
robustlmm, rstanarm, rstudioapi, speedglm, splines, statmod,
survey, survival, tripack, truncreg, testthat, VGAM, knitr,
rmarkdown, spelling
XML, devtools, tools, rjson, data.table, plyr, ggplot2
XML, devtools, rjson, data.table, plyr, ggplot2, sp, tools
curl, stringr, XML, devtools, rjson, data.table, plyr,
ggplot2, sp, tools
curl, XML, htmltab, devtools, rjson, data.table, plyr,
ggplot2, sp, tools
curl, XML, htmltab, devtools, rjson, data.table, plyr,
ggplot2, sp, tools, pkgbuild
curl, XML, devtools, rjson, data.table, plyr, ggplot2, sp,
tools, pkgbuild (>= 1.1.0), testthat (>= 2.1.0), mockery,
R.utils
spelling, knitr, rmarkdown, testthat, fitdistrplus, truncdist
fields, RANN, INLA (>= 21.08.31), rgeos, viridis, ggpolypath,
ggmap, spatstat, RColorBrewer, knitr, rmarkdown, testthat (>=
3.0.0), sf, covr
utils, knitr, rmarkdown, testthat (>= 2.1.0), covr, vcr
brms, broom, cowplot, ggstance, glue, huxtable (>= 3.0.0),
lme4, rstanarm, sandwich, survey, knitr, rmarkdown, rmdformats,
testthat
broom, cowplot, ggstance, glue, huxtable (>= 3.0.0), lme4,
margins, sandwich, survey, knitr, rmarkdown, testthat
broom, cowplot, ggstance, glue, huxtable (>= 3.0.0), lme4,
margins, sandwich, survey, knitr, rmarkdown, testthat, vdiffr
sp, Deriv, Ryacas, ggplot2, gridExtra, lattice, stringi,
stringr
TDA, simplextree (>= 0.9.1), igraph (>= 0.6-0), network (>=
1.4-2), intergraph, reticulate, roxygen2, rmarkdown, testthat
agridat, googlesheets4, corrplot, knitr, rmarkdown, testthat
agridat, googlesheets4, corrplot, knitr, rmarkdown
doParallel, foreach, lattice, latticeExtra, grid, gridExtra,
testthat, knitr, rmarkdown
covr, testthat (>= 3.0.0), igraph, igraphdata
crayon, knitr, pillar (>= 1.4.0), rmarkdown, testthat (>=
2.2.0)
crayon, dplyr (>= 1.0.0), knitr, pillar (>= 1.4.5),
rmarkdown, testthat (>= 2.2.0)
crayon, dplyr (>= 1.0.0), fuzzyjoin (>= 0.1.6), knitr, pillar
(>= 1.4.5), rmarkdown, testthat (>= 2.2.0)
blob, crayon, dplyr (>= 1.0.0), fuzzyjoin (>= 0.1.6), knitr,
pillar (>= 1.4.5), rmarkdown, testthat (>= 2.2.0)
bignum (>= 0.2.0), blob, crayon, dplyr (>= 1.0.0), fuzzyjoin
(>= 0.1.6), knitr, pillar (>= 1.4.5), rmarkdown, testthat (>=
2.2.0)
testthat, knitr, rmarkdown, future, promises
testthat, knitr, rmarkdown, future, promises, redux
ggplot2, knitr, rmarkdown, spelling, testthat
ggplot2, knitr, parameters, rmarkdown, spelling, testthat
ggplot2, knitr, rmarkdown, parameters, spelling, testthat
ggplot2, rmarkdown, parameters, spelling, testthat
knitr, lme4, mvtnorm, rmarkdown, roxygen2, spelling,
testthat, covr
covr, knitr, lme4, mvtnorm, rmarkdown, roxygen2, spelling,
testthat, tools
mvtnorm, mlbench, TH.data, randomForest, party
caret, knitr, MASS, R.rsp, rmarkdown, testthat
FrF2, knitr, plot3D , rmarkdown, sf, testthat (>= 0.11.0)
DT, ggplot2, htmltools, knitr, rgdal, rmarkdown, rstudioapi,
scales, sf, sp, shiny, testthat, covr
DT, ggplot2, htmltools, knitr, rgdal, rmarkdown, rstudioapi,
scales, sf, sp, shiny, testthat, covr, biglm, DBI, RSQLite,
dbplyr
DT, ggplot2, htmltools, knitr, rgdal, rmarkdown, rstudioapi,
scales, sf, sp, shiny, testthat, covr, biglm, DBI, RSQLite,
dbplyr, vcr (>= 0.6.0), withr
DT, ggplot2, htmltools, knitr, rgdal, rmarkdown, rstudioapi,
scales, sf, sp, shiny, testthat, covr, biglm, DBI, RSQLite,
dbplyr, vcr (>= 0.6.0), withr, raster
kableExtra, fda, knitr, rmarkdown, spelling
kableExtra, fda, knitr, rmarkdown, spelling, vctrs,
tidyselect
Rmpi (>= 0.6.0), parallel, knitr, testthat
Rmpi (>= 0.6.0), parallel, knitr, testthat, withr, mlr
Rmpi (>= 0.6.0), parallel, knitr, testthat, withr, mlr (>=
2.15.0), ParamHelpers, devtools
Rmpi (>= 0.6.0), parallel, knitr, testthat, withr, mlr (>=
2.15.0), ParamHelpers, devtools, rhub
Rmpi (>= 0.6.0), parallel, knitr, testthat, withr, mlr (>=
2.15.0), ParamHelpers, devtools, covr
testthat, knitr, rmarkdown, DiagrammeR, ggplot2
knitr, rmarkdown, DiagrammeR, ggplot2, curl, tinytest
ggplot2, markdown, knitr, rmarkdown, tibble, pillar
tinytest, affy, Biobase, xcms, knitr, rmarkdown
roxygen2 (>= 5.0.1), testthat, rmarkdown, knitr, covr
roxygen2 (>= 6.1.0), testthat, rmarkdown, knitr
knitr, rmarkdown, testthat (>= 3.0.0), covr
knitr, rmarkdown, testthat (>= 3.0.0), covr, curl
covr, ggplot2, knitr, lwgeom, magick, microbenchmark,
rmarkdown, sf, testthat
covr, ggplot2, knitr, magick, microbenchmark, rmarkdown, sf,
testthat
covr, ggplot2, knitr, magick, microbenchmark, rmarkdown, sf,
testthat, xml2
rmarkdown, knitr, testthat (>= 3.0.0), ggplot2, tidyr, dplyr
dendextend, doParallel, ggplot2, gridExtra, kableExtra,
knitr, parallel, purrr, pvclust, rmarkdown, rasterVis,
viridisLite
dendextend, doParallel, ggplot2, gridExtra, kableExtra,
knitr, parallel, pvclust, rmarkdown, rasterVis, viridisLite
dendextend, doParallel, dplyr, ggplot2, gridExtra,
kableExtra, knitr, parallel, pvclust, rmarkdown, rasterVis,
viridisLite
shades, viridisLite, knitr, rmarkdown, devtools, spelling,
testthat (>= 3.0.0), covr
testthat, readxl, knitr, rmarkdown, covr
devtools, testthat, feather (>= 0.3.5), readxl (>= 1.3.1),
openxlsx (>= 4.1.5), xml2 (>= 1.3.1), rhdf5 (>= 2.0.0), knitr,
rmarkdown, covr
devtools, testthat, feather (>= 0.3.5), readxl (>= 1.3.1),
openxlsx (>= 4.1.5), xml2 (>= 1.3.1), rhdf5 (>= 2.0.0), knitr,
markdown, rmarkdown, covr
bayesplot, covr, ggdist, ggplot2, ggraph, gridBase,
gridExtra, here, igraph, knitr, lattice, readxl, rmarkdown,
testthat, tidygraph, tidyverse, viridisLite
MASS, outliertree, jsonlite (>= 1.7.3), mlbench, MLmetrics,
kernlab, knitr, rmarkdown, kableExtra
rmarkdown, knitr, testthat (>= 3.0.0), readxl
knitr, rmarkdown, stats, testthat (>= 3.0.0)
testthat, haven, MCMCpack, knitr, rmarkdown
covr, Formula, knitr, rmarkdown, testthat (>= 3.0.0)
gurobi (>= 8.1-0), slam (>= 0.1-42), cplexAPI (>= 1.3.3),
lpSolveAPI (>= 5.5.2.0-17), testthat (>= 2.0.0), data.table (>=
1.12.0), splines2 (>= 0.2.8), Matrix, knitr, rmarkdown, pander,
AER, ggplot2, gridExtra
gurobi (>= 8.1-0), slam (>= 0.1-42), cplexAPI (>= 1.3.3),
lpSolveAPI (>= 5.5.2.0-17), Rmosek (>= 9.2.38), testthat (>=
2.0.0), data.table (>= 1.12.0), splines2 (>= 0.2.8),
future.apply (>= 1.6.0), future (>= 1.18.0), Matrix, knitr,
rmarkdown, pander, AER, lsei, ggplot2, gridExtra
AER, effects (>= 4.2.0), knitr, insight, parallel, rmarkdown,
sandwich, testthat
AER, effects (>= 4.2.0), knitr, insight, parallel, rmarkdown,
sandwich, testthat, modelsummary, ggplot2
knitr, raster, sp, rmarkdown, bookdown, testthat, boral
knitr, kableExtra, raster, sp, rgdal, dplyr, rmarkdown,
bookdown, testthat, boral, Hmsc, BayesComm, snow, snowfall,
ggplot2
boot (>= 1.3-10), coala (>= 0.2.1), knitr, rmarkdown,
testthat (>= 0.11.0), snow
tm, stringi, bracer, mgsub, qdapRegex, stringr, data.table,
xmlconvert, jsonlite, anytime, cffr, rbibutils
tm, stringi, bracer, mgsub, qdapRegex, stringr, data.table,
xmlconvert, jsonlite, anytime, cffr, rbibutils, install.load
coala, knitr, markdown, rmarkdown, scrm, testthat
knitr, rmarkdown, sf, testthat, tibble, tidygraph
roxygen2 (>= 6.1.0), testthat, knitr, rmarkdown, vcr
kableExtra, knitr, MUS, rmarkdown, testthat
kableExtra, knitr, MUS, rmarkdown, samplingbook, testthat
exact2x2, testthat, semPlot, carData, knitr, rmarkdown
exact2x2, testthat, semPlot, carData, knitr
jmv, jmvcore, knitr, rmarkdown, RProtoBuf
jmv, jmvcore, foreign, haven, knitr, rmarkdown, RProtoBuf,
testthat (>= 3.0.0), covr
testthat (>= 1.0.2), RProtoBuf, knitr, ggplot2
testthat (>= 1.0.2), RProtoBuf, knitr, ggplot2, RColorBrewer
testthat (>= 1.0.2), RProtoBuf, knitr, ggplot2, RColorBrewer,
ragg
testthat (>= 1.0.2), RProtoBuf, knitr, ggplot2, RColorBrewer,
ragg, fastmap
JM, joineR, knitr, rmarkdown, R.rsp, testthat
bindrcpp, dplyr, JM, joineR, knitr, rmarkdown, testthat
PSCBS, R.cache, digest, changepoint (>= 1.0.2), knitr,
rmarkdown, testthat
testthat, knitr, rmarkdown, tidyr, rclipboard, tinytex, DT
testthat, knitr, rmarkdown, data.table, tidyr, rclipboard,
tinytex, DT
testthat, data.table, tidyr, rclipboard, tinytex, DT
testthat, tidyr, rclipboard, tinytex, DT,rmarkdown (>= 2.7),
knitr (>= 1.33)
testthat (>= 3.0.0), rclipboard, tinytex, DT, rmarkdown (>=
2.7), knitr (>= 1.33)
covr, janitor, knitr, rmarkdown, testthat (>= 3.0.0)
badger, covr, knitr, rmarkdown, testthat (>= 3.0.0)
covr (>= 3.0.1), knitr, stringr (>= 1.2.0), testthat (>=
1.0.2), rmarkdown
devtools, jpmesh, knitr, rmarkdown, rvest, plotly, purrr,
testthat, tidyr
devtools, ggplot2, kokudosuuchi, jpmesh, knitr, plotly,
purrr, rmarkdown, rvest, testthat, tidyr
devtools, kokudosuuchi, knitr, rmarkdown, rvest, testthat (>=
1.0.2)
covr, knitr, lwgeom (>= 0.1-7), rvest, testthat
keyring (>= 1.2.0), knitr, rmarkdown, testthat (>= 3.0.0)
roxygen2 (>= 6.0.1), jsonlite, testthat, knitr
roxygen2 (>= 6.1.0), jsonlite, testthat, knitr, rmarkdown
covr, microbenchmark, jsonlite, testthat, knitr, rmarkdown
testthat, knitr, reshape2, httr (>= 0.3), RCurl, rjson, plyr
testthat, knitr, reshape2, httr (>= 0.4), rjson, plyr
testthat, knitr, reshape2, httr (>= 0.4), rjson, plyr, curl
curl (>= 0.5), plyr, testthat, knitr, rmarkdown, R.rsp
httr, curl, plyr, testthat, knitr, rmarkdown, R.rsp
testthat, knitr, reshape2, httr (>= 0.3), rjson
httr, curl, plyr, testthat, knitr, rmarkdown, R.rsp, sp
httr, curl, plyr, testthat, knitr, rmarkdown, R.rsp, sf, sp
httr, curl, plyr, testthat, knitr, rmarkdown, R.rsp, sf
httr, curl, vctrs, testthat, knitr, rmarkdown, R.rsp, sf
httr, vctrs, testthat, knitr, rmarkdown, R.rsp, sf
curl, dplyr, knitr, repurrrsive, rmarkdown, testthat (>=
2.1.0)
knitr, jsonlite, rmarkdown, testthat, withr
testthat, covr, knitr, rmarkdown, future
ggplot2, lmtest, sandwich, car, survey, weights,
RColorBrewer, cowplot, knitr, rmarkdown
ggplot2, lmtest, sandwich, car, survey, weights,
RColorBrewer, cowplot, knitr, rmarkdown, testthat
ggplot2, lmtest, sandwich, car, survey, weights,
RColorBrewer, cowplot, lme4, knitr, rmarkdown, testthat
ggplot2, lmtest, sandwich, survey, car, weights,
RColorBrewer, cowplot, lme4, knitr, rmarkdown, testthat
boot, broom, car, cowplot, ggplot2, huxtable, lme4, lmtest,
methods, nlme, pbkrtest, RColorBrewer, ReporteRs, sandwich,
survey, weights, knitr, rmarkdown, testthat
boot, broom, car, cowplot, flextable, ggplot2, huxtable (>=
1.0.0), lme4, methods, nlme, officer, pbkrtest, RColorBrewer,
sandwich, stats4, survey, weights, knitr, rmarkdown, testthat
boot, broom, car, cowplot, flextable, grid, huxtable (>=
1.0.0), lme4, methods, nlme, officer, pbkrtest, plyr,
RColorBrewer, sandwich, stats4, survey, weights, knitr,
rmarkdown, testthat
boot, broom, car, cowplot, flextable, grid, huxtable (>=
1.0.0), lme4, methods, officer, pbkrtest, plyr, RColorBrewer,
sandwich, stats4, survey, weights, knitr, rmarkdown, testthat
boot, broom, brms, cowplot, ggstance, huxtable (>= 3.0.0),
lme4, methods, pbkrtest, quantreg, RColorBrewer, rstanarm,
sandwich, stats4, survey, weights, knitr, rmarkdown, testthat
boot, broom, brms, cowplot, ggstance, glue, huxtable (>=
3.0.0), lme4, lmerTest, methods, pbkrtest, quantreg,
RColorBrewer, rstanarm, sandwich, stats4, survey, weights,
knitr, rmarkdown, testthat
boot, broom, brms, cowplot, ggstance, glue, huxtable (>=
3.0.0), kableExtra, lme4, lmerTest, methods, pbkrtest,
quantreg, RColorBrewer, rstanarm, sandwich, stats4, survey,
weights, knitr, rmarkdown, rmdformats, testthat
boot, broom, brms, cowplot, ggstance, huxtable (>= 3.0.0),
kableExtra, lme4, lmerTest, MASS, methods, pbkrtest, quantreg,
RColorBrewer, rstanarm, sandwich, scales, stats4, survey,
weights, knitr, rmarkdown, rmdformats, testthat
boot, broom, ggstance, huxtable (>= 3.0.0), kableExtra, lme4,
lmerTest, MASS, methods, pbkrtest, RColorBrewer, sandwich,
scales, survey, weights, knitr, rmarkdown, testthat
boot, broom, broom.mixed, ggstance, huxtable (>= 3.0.0),
kableExtra, lme4, lmerTest, MASS, methods, pbkrtest,
RColorBrewer, sandwich, scales, survey, weights, knitr,
rmarkdown, testthat
boot, broom, broom.mixed, ggstance, huxtable (>= 3.0.0),
kableExtra, lme4, lmerTest, MASS, methods, pbkrtest,
RColorBrewer, sandwich, scales, survey, weights, knitr,
rmarkdown, testthat, vdiffr
knitr, tinytex, R.rsp, testthat, roxygen2, scales, shape
dplyr, ggplot2, knitr, magrittr, rmarkdown, testthat, tidyr
covr, here, jsonlite (>= 1.7), knitr, rmarkdown, testthat
knitr, methods, stats, testthat, tools, utils
clipr, devtools, knitr, methods, pkgbuild, stats, testthat,
tools, utils, withr
covr, folio, knitr, rmarkdown, testthat (>= 3.0.0), vdiffr
(>= 1.0.0)
covr, folio, khroma, knitr, rmarkdown, testthat (>= 3.0.0),
vdiffr (>= 1.0.0)
covr, folio (>= 1.3.0), khroma, knitr, rmarkdown, tabula (>=
2.0.0), testthat (>= 3.0.0), vdiffr (>= 1.0.0)
data.table (>= 1.14.2), maxLik (>= 1.5-2), ggplot2 (>=
3.3.6), gridExtra (>= 2.3), knitr, rmarkdown, testthat
extraDistr, SkewHyperbolic, testthat, covr, EQL, knitr,
rmarkdown
extraDistr, SkewHyperbolic, testthat, covr, knitr, rmarkdown
testthat, knitr, rmarkdown, covr, ggplot2, tidytext, printr,
scales
testthat, knitr, rmarkdown, covr, ggplot2, tidytext, printr,
scales, BH
testthat, knitr, markdown, rmarkdown, covr, ggplot2,
tidytext, printr, scales, BH
testthat, knitr, markdown, rmarkdown, covr, ggplot2,
tidytext, printr, scales, BH, sf
ggplot2, testthat (>= 2.1.0), knitr, rmarkdown, tfdatasets,
jpeg
ggplot2, testthat (>= 2.1.0), knitr, rmarkdown, callr,
tfdatasets, jpeg
ggplot2, testthat (>= 2.1.0), knitr, rmarkdown, callr,
tfdatasets, withr, jpeg
ggplot2, testthat (>= 2.1.0), knitr, rmarkdown, callr,
tfdatasets, withr, png, jpeg
knitr, rmarkdown, covr, stats, testthat, keras, tfdatasets,
purrr
knitr, rmarkdown, tfdatasets, testthat, purrr
knitr, tfdatasets, testthat, purrr, rmarkdown
DiceKriging, DiceDesign, lhs, inline, foreach
DiceKriging, DiceDesign, lhs, inline, foreach, knitr,
ggplot2, reshape2, corrplot
DiceKriging, DiceDesign, inline, foreach, knitr, ggplot2,
reshape2, corrplot
bindata, knitr, rmarkdown, MASS, testthat
TDA, knitr, rmarkdown, SparseM, Matrix, kernlab, viridis
rmarkdown, knitr, shinytest, testthat (>= 3.0.0)
rmarkdown, knitr, testthat (>= 3.0.0), covr, foreach,
doParallel, parallel
covr (>= 3.2.1), testthat (>= 2.1.1), vdiffr (>= 0.3.0),
knitr, rmarkdown
covr, crayon, fansi, knitr, rmarkdown, testthat, vdiffr
covr, crayon, fansi, knitr, rmarkdown, testthat (>= 3.0.0),
vdiffr
covr, crayon, fansi, ggplot2, knitr, rmarkdown, scales,
spacesXYZ, testthat (>= 3.0.0), vdiffr
covr, crayon, fansi, ggplot2, knitr, rmarkdown, scales,
spacesXYZ, testthat (>= 3.0.0), vdiffr (>= 1.0.0)
covr, crayon, fansi, ggplot2, ggraph, knitr, rmarkdown,
scales, spacesXYZ, testthat (>= 3.0.0), vdiffr (>= 1.0.0)
testthat, knitr, utils, markdown, rmarkdown, ggplot2
dplyr, knitr, psd, rmarkdown, RColorBrewer, sapa, signal,
testthat
dplyr, tibble, RColorBrewer, signal, testthat, knitr,
rmarkdown, formatR, covr
scatterplot3d (>= 0.3-22), som, mlbench, rpart, e1071
scatterplot3d (>= 0.3-22), som, mlbench, rpart, e1071, combinat
scatterplot3d (>= 0.3-22), som, mlbench, rpart, e1071,
combinat
scatterplot3d (>= 0.3-22), som, mlbench, rpart, e1071, evtree
scatterplot3d (>= 0.3-22), som, mlbench, rpart, e1071,
combinat, evtree
rmarkdown, knitr, testthat (>= 3.0.0), kableExtra, magrittr,
httptest
Rmosek, tikzDevice, mclust, grDevices, graphics, knitr
Rmosek, tikzDevice, mclust, grDevices, graphics, knitr,
markdown
survival, ggplot2, tidyr, testthat (>= 3.0.0)
ape (>= 4.0), dendextend, knitr, rmarkdown, testthat
testthat, rgl, tikzDevice (>= 0.6.2), XML
testthat, rgl, tikzDevice (>= 0.6.2), XML, RCurl
testthat, rgl, tikzDevice (>= 0.6.2), codetools, XML, RCurl
testthat, rgl, tikzDevice (>= 0.6.2), codetools, markdown (>=
0.4), XML, RCurl
testthat, rgl, codetools, markdown (>= 0.4), R2SWF (>= 0.4),
XML, RCurl
testthat, rgl, codetools, markdown (>= 0.4), R2SWF (>= 0.4),
XML, RCurl, Rcpp (>= 0.10.0)
testthat, rgl, codetools, R2SWF (>= 0.4), XML, RCurl, Rcpp
(>= 0.10.0)
testit, rgl (>= 0.95.1201), codetools, rmarkdown, XML, RCurl
testit, rgl (>= 0.95.1201), codetools, rmarkdown, tikzDevice
(>= 0.9), XML, RCurl
testit, rgl (>= 0.95.1201), codetools, rmarkdown,
htmlwidgets, webshot, tikzDevice (>= 0.10), png, jpeg, XML,
RCurl
testit, rgl (>= 0.95.1201), codetools, rmarkdown,
htmlwidgets, webshot, tikzDevice (>= 0.10), png, jpeg, XML,
RCurl, DBI (>= 0.4-1), tibble
formatR, testit, rgl (>= 0.95.1201), codetools, rmarkdown,
htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10), png, jpeg,
XML, RCurl, DBI (>= 0.4-1), tibble
formatR, testit, rgl (>= 0.95.1201), codetools, rmarkdown,
htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10), reticulate
(>= 1.3.1), JuliaCall (>= 0.11.1), png, jpeg, xml2, httr, DBI
(>= 0.4-1), tibble
formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1), png, jpeg,
xml2, httr, DBI (>= 0.4-1), showtext, tibble
formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, xfun, reticulate (>= 1.4), JuliaCall (>= 0.11.1), png,
jpeg, xml2, httr, DBI (>= 0.4-1), showtext, tibble
formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1), png, jpeg,
gifski, xml2 (>= 1.2.0), httr, DBI (>= 0.4-1), showtext,
tibble, styler
formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1), magick,
png, jpeg, gifski, xml2 (>= 1.2.0), httr, DBI (>= 0.4-1),
showtext, tibble, styler
formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1), magick,
png, jpeg, gifski, xml2 (>= 1.2.0), httr, DBI (>= 0.4-1),
showtext, tibble, sass, styler
formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1), magick,
png, jpeg, gifski, xml2 (>= 1.2.0), httr, DBI (>= 0.4-1),
showtext, tibble, sass, styler (>= 1.2.0)
formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1), magick,
png, jpeg, gifski, xml2 (>= 1.2.0), httr, DBI (>= 0.4-1),
showtext, tibble, sass, ragg, styler (>= 1.2.0)
testit, rgl, codetools, R2SWF (>= 0.4), XML, RCurl, Rcpp (>=
0.10.0)
formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1), magick,
png, jpeg, gifski, xml2 (>= 1.2.0), httr, DBI (>= 0.4-1),
showtext, tibble, sass, bslib, ragg, styler (>= 1.2.0)
markdown, formatR, testit, digest, rgl (>= 0.95.1201),
codetools, rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice
(>= 0.10), tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1),
magick, png, jpeg, gifski, xml2 (>= 1.2.0), httr, DBI (>=
0.4-1), showtext, tibble, sass, bslib, ragg, styler (>= 1.2.0),
targets (>= 0.6.0)
testit, rgl, codetools, R2SWF (>= 0.4), XML, RCurl
markdown, formatR, testit, digest, rgl (>= 0.95.1201),
codetools, rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice
(>= 0.10), tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1),
magick, png, jpeg, gifski, xml2 (>= 1.2.0), httr, DBI (>=
0.4-1), showtext, tibble, sass, bslib, ragg, gridSVG, styler
(>= 1.2.0), targets (>= 0.6.0)
markdown (>= 1.3), formatR, testit, digest, rgl (>=
0.95.1201), codetools, rmarkdown, htmlwidgets (>= 0.7),
webshot, tikzDevice (>= 0.10), tinytex, reticulate (>= 1.4),
JuliaCall (>= 0.11.1), magick, png, jpeg, gifski, xml2 (>=
1.2.0), httr, DBI (>= 0.4-1), showtext, tibble, sass, bslib,
ragg, gridSVG, styler (>= 1.2.0), targets (>= 0.6.0)
testit, rgl, codetools, rmarkdown, XML, RCurl
testthat, roxygen2, corrplot, ggplot2, igraph, maps, mapproj,
maptools, plyr, reshape2, xtable,
testthat, roxygen2, corrplot, ggplot2, igraph, maps, mapproj,
maptools, plyr, reshape2, xtable
knitr, rmarkdown, purrr, testthat, covr, mockr, withr
knitr, rmarkdown, purrr, testthat, covr, mockr, withr,
parallel
gpg, rmarkdown, magrittr, shiny, miniUI, rstudioapi (>=
0.11), DT
gpg, rmarkdown, magrittr, shiny, miniUI, rstudioapi (>=
0.11), DT, digest
knitr, testthat, rmarkdown, lars, ranger, stabs, RPtests,
doMC, parallel
knitr, testthat, rmarkdown, lars, ranger, stabs, RPtests,
doParallel, parallel
devtools, forcats, knitr, lme4, rmarkdown, roxygen2, testthat
devtools, forcats, knitr, lme4, rmarkdown, roxygen2,
testthat, mice
margins, pbkrtest, devtools, forcats, knitr, lme4, rmarkdown,
roxygen2, testthat
margins, pbkrtest, devtools, forcats, knitr, lme4, rmarkdown,
roxygen2, testthat, ggrepel
margins, pbkrtest, devtools, forcats, knitr, lme4, rmarkdown,
roxygen2, testthat, ggrepel, covr
parallel, pbapply, spam, testthat (>= 3.0.0)
maps, MASS, misc3d (>= 0.4-0), OceanView, oz, rgl (>= 0.66)
spelling, maps, MASS, misc3d (>= 0.4-0), OceanView, oz, rgl
(>= 0.66)
geometry, MASS, misc3d (>= 0.4-0), oz, rgl (>= 0.66)
amap, FactoClass, foreach, LICORS, testthat
cluster, dbscan, knitr, Rcssplot (>= 1.0.0), rmarkdown,
testthat
RUnit, knitr, lme4, nlme, xtable, MASS, MethComp
RUnit, knitr, lme4, nlme, xtable, MASS, splines, survival,
abind
RUnit, knitr, lme4, nlme, xtable, MASS, splines, survival
RUnit, lme4, nlme, xtable, MASS, splines, survival, abind,
pracma, VGAM, copula, mvtnorm, Hmisc
RUnit, lme4, nlme, xtable, MASS, splines, survival, abind,
pracma, VGAM, copula, mvtnorm, Hmisc, RColorBrewer
RUnit, lme4, nlme, xtable, MASS, splines, survival, abind,
pracma, VGAM, copula, mvtnorm, Hmisc, RColorBrewer, zoo
RUnit, R.rsp, lme4, nlme, xtable, MASS, splines, survival,
abind, pracma, VGAM, copula, mvtnorm, Hmisc, RColorBrewer, zoo,
doParallel, Exact, survey
RUnit, R.rsp, lme4, nlme, xtable, MASS, splines, survival,
abind, pracma, VGAM, copula, mvtnorm, Hmisc, RColorBrewer, zoo
RUnit, R.rsp, lme4, nlme, xtable, MASS, splines, survival,
abind, pracma, VGAM, copula, mvtnorm, Hmisc, RColorBrewer, zoo,
doParallel, Exact, survey, magick
mvtnorm, MASS, akima, lhs, crs, DiceOptim
mvtnorm, MASS, interp, lhs, crs, DiceOptim
haven, dplyr, testthat, knitr, data.table
testthat, knitr, rmarkdown, questionr, snakecase
testthat, knitr, rmarkdown, questionr, snakecase, utf8, covr,
spelling
testthat, knitr, rmarkdown, questionr, snakecase, utf8
testthat, knitr, rmarkdown, questionr, snakecase, utf8, covr
testthat (>= 2.1.0), roxygen2 (>= 6.1.1), magrittr (>= 1.5),
rlang (>= 0.4.0), covr, knitr, rmarkdown
testthat (>= 2.1.0), knitr, rmarkdown, httptest, mockery
bsplus, covr, datapasta, glue, knitr, miniUI, rhandsontable,
rmarkdown, shiny, shinyjs, shinyWidgets, spelling, testthat (>=
3.0.0)
raster, maptools, rgdal, cubature, testthat
cubature, maptools, raster, rgdal, testthat
withr, testthat (>= 3.0.0), webmockr, knitr, rmarkdown,
lifecycle
nabor, meteo, geoR, ParamHelpers, mda, psych, spdep, fossil,
xgboost, plyr, kernlab, nnet, rjson, spatstat, spatstat.core,
maptools, maxlike, RCurl, aqp, deepnet, RSAGA, soiltexture,
snowfall, plotKML, boot
boot, nabor, meteo, mda, psych, fossil, rjson, spatstat,
spatstat.core, maxlike, RCurl, deepnet, RSAGA, plotKML
fossil, xgboost, plyr, kernlab, nnet, rjson, spatstat,
maptools, maxlike, RCurl, aqp, deepnet, RSAGA, soiltexture,
snowfall, plotKML, boot
geoR, ParamHelpers, mda, psych, spdep, fossil, xgboost, plyr,
kernlab, nnet, rjson, spatstat, maptools, maxlike, RCurl, aqp,
deepnet, RSAGA, soiltexture, snowfall, plotKML, boot
geoR, ParamHelpers, mda, psych, spdep, fossil, xgboost, plyr,
kernlab, nnet, rjson, spatstat, spatstat.core, maptools,
maxlike, RCurl, aqp, deepnet, RSAGA, soiltexture, snowfall,
plotKML, boot
covr, dplyr, knitr, rgeos, rmarkdown, testthat
covr, dplyr, knitr, rgeos, rmarkdown, terra, testthat
testthat, shiny, shinyjs, DT, knitr, rmarkdown
testthat (>= 3.0.0), shiny, shinyjs, DT, knitr, rmarkdown
GPArotation, tourr, liminal, geozoo, palmerpenguins, RANN,
MASS, ggplot2, dplyr, tibble, knitr, rmarkdown, airway, limma,
edgeR, EnsDb.Hsapiens.v86, AnnotationDbi
shiny, GPArotation, tourr, liminal, geozoo, palmerpenguins,
RANN, MASS, ggplot2, dplyr, tibble, knitr, rmarkdown, airway,
limma, edgeR, EnsDb.Hsapiens.v86, AnnotationDbi
cluster, e1071, Design, Hmisc, MASS, rpart
cluster, e1071, Design, Hmisc, MASS, rpart, lattice, zipfR,
lme4
cluster, e1071, Design, Hmisc, MASS, rpart, lattice, zipfR
cluster, e1071, rms, Hmisc, MASS, rpart, lattice, zipfR,
lme4, multcomp
cluster, e1071, rms, Hmisc, MASS, rpart, lattice, zipfR,
lme4, multcomp, lmerTest, optimx
processx, knitr, magrittr, purrr, fs, withr, testthat
fs, knitr, magrittr, processx, purrr, testthat, withr
covr, fs, knitr, magrittr, mockery, processx, purrr, testthat
(>= 2.1.0), withr
beepr, DALEX, DBI, forecast, ggforce, ggrepel, googleAuthR,
googlesheets4, mice, quantmod, plotly, rdrop2, rlist,
rmarkdown, rtweet, skimr, sp, tm, wordcloud
beepr, DALEX, DBI, forecast, ggforce, ggrepel, googleAuthR,
googlesheets4, quantmod, plotly, rdrop2, rmarkdown, rtweet, tm,
wordcloud
beepr, DALEX, DBI, forecast, googleAuthR, googlesheets4,
knitr, quantmod, plotly, rdrop2, rmarkdown, rtweet, tm,
wordcloud
beepr, DALEX, googleAuthR, googlesheets4, knitr, quantmod,
rdrop2, rmarkdown, tm
beepr, DALEX, googleAuthR, googlesheets4, knitr, quantmod,
rdrop2, rmarkdown
testthat, covr, knitr, rmarkdown, wesanderson, RColorBrewer,
dplyr, png, magrittr
testthat, covr, knitr, rmarkdown, wesanderson, RColorBrewer,
dplyr, magrittr
ggforce, testthat, knitr, rmarkdown, png, dbscan
markdown, knitr, testthat (>= 3.0.0), covr
microbenchmark, rmarkdown, markdown, knitr, testthat (>=
3.0.0), covr
rmarkdown, markdown, knitr, testthat (>= 3.0.0), lattice,
cubature, plot3D, covr
KernSmooth, snowFT, rgl, heplots, rlecuyer, ergm.userterms
KernSmooth, snowFT, rgl, heplots, rlecuyer, ergm.userterms,
covr
coda, mclust, KernSmooth, snowFT, ergm, rgl
KernSmooth, snowFT, rgl, heplots, rlecuyer
testthat, knitr, ggplot2, plyr, rmarkdown
testthat, knitr, ggplot2, plyr, rmarkdown, purrr, tibble
testthat, knitr, ggplot2, rmarkdown, purrr, tibble,
reactable, htmltools, RCurl, rlang, dplyr
testthat, waldo, knitr, ggplot2, rmarkdown, purrr, tibble,
reactable, htmltools, RCurl, rlang, dplyr
tinytex, rmarkdown, knitr, testthat, covr
testthat (>= 3.0.0), roxygen2 (>= 7.1.0), knitr (>= 1.24),
rmarkdown (>= 1.18), kml, lcmm, longclust, mixtools, flexmix,
fda, funFEM, igraph, crimCV, akmedoids, dtwclust, mixAK, psych,
qqplotr
testthat (>= 3.0.0), roxygen2 (>= 7.1.0), knitr (>= 1.24),
rmarkdown (>= 1.18), kml, lcmm, longclust, mixtools, flexmix,
fda, funFEM, igraph, crimCV, akmedoids (>= 1.3.0), dtwclust,
mixAK, psych, qqplotr, doParallel
testthat (>= 3.0.0), roxygen2 (>= 7.1.0), knitr (>= 1.24),
rmarkdown (>= 1.18), rcmdcheck, pkgdown, devtools, lme4, covr,
lintr, tinytex, longitudinalData (>= 2.4.1), kml (>= 2.4.1),
lcmm (>= 1.9.3), longclust, mixtools, flexmix, fda, funFEM,
gridExtra, igraph, crimCV, akmedoids (>= 1.3.0), dtwclust,
mixAK, clusterCrit, mclust, mclustcomp, psych, qqplotr,
doParallel, simTool, dplyr, ggplot2, caret, tibble
testthat (>= 3.0.0), roxygen2 (>= 7.1.0), knitr (>= 1.24),
rcmdcheck, pkgdown, devtools, evaluate, lme4, covr, lintr,
tinytex, longitudinalData (>= 2.4.1), kml (>= 2.4.1), lcmm (>=
1.9.3), mixtools, flexmix, fda, funFEM, gridExtra, igraph,
crimCV, akmedoids (>= 1.3.0), dtwclust, mixAK, clusterCrit,
mclust, mclustcomp, psych, qqplotr, doParallel, simTool, dplyr,
ggplot2, caret, tibble
knitr, devtools, roxygen2, testthat, rmarkdown, rgdal
maps, mapproj, deldir, tripack, quantreg, zoo
maps, mapproj, deldir, tripack, quantreg, zoo, MASS
maps, mapproj, deldir, tripack, quantreg, zoo, MASS, mgcv
maps, mapproj, deldir, tripack, zoo, MASS, quantreg, mgcv
maps, mapproj, deldir, quantreg, zoo, mgcv
maps, mapproj, deldir, tripack, quantreg
playwith, gWidgetstcltk, hexbin, deldir, tripack, DAAG, RGtk2
playwith, hexbin, deldir, tripack, DAAG, RGtk2,
gWidgetsRGtk2, gWidgetstcltk, MASS
Rgraphviz, igraph, Matrix, gof (>= 0.8), foreach, survival
graph, Rgraphviz, igraph (>= 0.6), Matrix, gof (>= 0.8),
foreach, survival
graph, Rgraphviz, igraph (>= 0.6), Matrix, lme4, geepack, gof
(>= 0.8), foreach, survival, testthat
graph, Rgraphviz, igraph (>= 0.6), Matrix, lme4, geepack, gof
(>= 0.9), foreach, survival, testthat
mets, graph, Rgraphviz, igraph (>= 0.6), Matrix, lme4,
geepack, gof (>= 0.9), foreach, survival, testthat, ascii
mets (>= 0.2.7), graph, Rgraphviz, igraph (>= 0.6), Matrix,
lme4, geepack, gof (>= 0.9), foreach, survival, testthat, ascii
mets (>= 0.2.7), graph, Rgraphviz, igraph (>= 0.6), Matrix,
KernSmooth, lme4, geepack, gof (>= 0.9), foreach, rgl,
survival, testthat, ascii
mets (>= 1.1), graph, Rgraphviz, igraph (>= 0.6), Matrix,
KernSmooth, lme4, geepack, gof (>= 0.9), foreach, rgl, fields,
survival, testthat, ascii
mets (>= 1.1), graph, data.table, Rgraphviz, igraph (>= 0.6),
Matrix, KernSmooth, lme4, geepack, gof (>= 0.9), foreach,
quantreg, rgl, fields, survival, testthat (>= 0.11), ascii, zoo
mets (>= 1.1), graph, optimx, data.table, Rgraphviz, igraph
(>= 0.6), Matrix, KernSmooth, lme4, geepack, gof (>= 0.9),
foreach, quantreg, rgl, fields, survival, testthat (>= 0.11),
ascii, zoo
mets (>= 1.1), optimx, data.table, Rgraphviz, graph, igraph
(>= 0.6), visNetwork, Matrix, KernSmooth, lme4, geepack, gof
(>= 0.9), foreach, quantreg, rgl, fields, testthat (>= 0.11),
ascii, zoo
KernSmooth, Matrix, Rgraphviz, ascii, data.table, fields,
foreach, geepack, gof (>= 0.9), graph, igraph (>= 0.6),
lava.tobit, lme4, mets (>= 1.1), optimx, quantreg, rgl,
testthat (>= 0.11), visNetwork, zoo
KernSmooth, Matrix, Rgraphviz, ascii, data.table, ellipse,
fields, foreach, geepack, gof (>= 0.9), graph, igraph (>= 0.6),
lava.tobit (>= 0.4.7), lme4, mets (>= 1.1), optimx, quantreg,
rgl, testthat (>= 0.11), visNetwork, zoo
KernSmooth, Matrix, Rgraphviz, data.table, ellipse, fields,
geepack, gof (>= 0.9), graph, knitr, bookdown, rmarkdown,
igraph (>= 0.6), lava.tobit (>= 0.4.7), lavaSearch2, lme4,
magrittr, mets (>= 1.1), nlme, optimx, polycor, quantreg, rgl,
R.rsp (>= 0.40), testthat (>= 0.11), visNetwork, zoo
KernSmooth, Matrix, Rgraphviz, ascii, data.table, ellipse,
fields, foreach, geepack, gof (>= 0.9), graph, igraph (>= 0.6),
lava.tobit (>= 0.4.7), lme4, mets (>= 1.1), nlme, optimx,
polycor, quantreg, rgl, testthat (>= 0.11), visNetwork, zoo
KernSmooth, Matrix, Rgraphviz, data.table, ellipse, fields,
foreach, geepack, gof (>= 0.9), graph, igraph (>= 0.6),
lava.tobit (>= 0.4.7), lme4, mets (>= 1.1), nlme, optimx,
polycor, quantreg, rgl, testthat (>= 0.11), visNetwork, zoo
KernSmooth, Matrix, Rgraphviz, data.table, ellipse, fields,
foreach, geepack, gof (>= 0.9), graph, knitr, bookdown,
rmarkdown, igraph (>= 0.6), lava.tobit (>= 0.4.7), lavaSearch2,
lme4, magrittr, mets (>= 1.1), nlme, optimx, polycor, quantreg,
rgl, R.rsp (>= 0.40), testthat (>= 0.11), visNetwork, zoo
KernSmooth, Matrix, Rgraphviz, ascii, data.table, ellipse,
fields, foreach, geepack, gof (>= 0.9), graph, igraph (>= 0.6),
lava.tobit, lme4, mets (>= 1.1), optimx, quantreg, rgl,
testthat (>= 0.11), visNetwork, zoo
KernSmooth, Matrix, Rgraphviz, data.table, ellipse, fields,
geepack, gof (>= 0.9), graph, knitr, bookdown, rmarkdown,
igraph (>= 0.6), lava.tobit (>= 0.4.7), lavaSearch2, lme4, mets
(>= 1.1), nlme, optimx, polycor, quantreg, rgl, R.rsp (>=
0.40), targeted (>= 0.2), testthat (>= 0.11), visNetwork, zoo
clubSandwich, lava.tobit, lme4, lmerTest, pbapply, pbkrtest,
riskRegression, sandwich, survival, testthat
clubSandwich, doParallel, foreach, lava.tobit, lme4,
lmerTest, numDeriv, pbapply, pbkrtest, riskRegression,
survival, tcltk, testthat
clubSandwich, data.table, doParallel, foreach, lava.tobit,
lme4, lmerTest, numDeriv, pbapply, pbkrtest, riskRegression,
survival, tcltk, testthat
clubSandwich, data.table, foreach, lava.tobit, lme4,
lmerTest, numDeriv, pbapply, pbkrtest, riskRegression,
survival, testthat
clubSandwich, data.table, foreach, lava.tobit, lme4,
lmerTest, numDeriv, pbapply, pbkrtest, R.rsp, riskRegression,
survival, testthat
data.table, foreach, lme4, lmerTest, numDeriv, pbapply,
pbkrtest, R.rsp, riskRegression, survival, testthat
psych, qgraph, semTools, simsem, lavaan.survey
rempsyc, flextable, lavaanPlot, DiagrammeRsvg, rsvg, png,
webshot, tidySEM, rlang, knitr, rmarkdown, markdown, testthat
(>= 3.0.0), covr
knitr, rmarkdown, DiagrammeRsvg, rsvg, png
testthat, knitr, rmarkdown, leaflet, covr
roxygen2 (>= 6.0.1), testthat, knitr, rmarkdown, leaflet
roxygen2 (>= 6.1.1), testthat, knitr, rmarkdown, leaflet
distillery, evd, evir, extRemes, fExtremes, ismev, knitr,
POT, rmarkdown, testthat, texmex
distillery, evd, evir, extRemes, fExtremes, ismev, knitr,
mev, POT, rmarkdown, testthat, texmex
distillery, eva, evd, evir, extRemes, fExtremes, ismev,
knitr, mev, POT, rmarkdown, testthat, texmex
testthat, knitr, fst, rmarkdown, dipsaus (>= 0.0.8)
knitr, rmarkdown (>= 0.2.65), microbenchmark, testthat
knitr, rmarkdown (>= 0.2.65), microbenchmark
knitr, rmarkdown (>= 0.2.65), testthat, covr
testthat (>= 2.1.0), covr, magrittr, data.table, bit64
optimx, microbenchmark, testthat, knitr, pkgbuild,
RcppArmadillo, rmarkdown
microbenchmark, testthat, knitr, pkgbuild, RcppArmadillo,
rmarkdown
optimx, microbenchmark, testthat, knitr, pkgbuild, rmarkdown,
RcppArmadillo
testthat, knitr, rmarkdown, covr, png, ggrepel, showtext
testthat, knitr, rmarkdown, covr, png, ggrepel, showtext,
leaflet, leaflet.extras
roxygen2 (>= 3.0.0), covr, testthat, MASS
Matrix, reshape2, ggplot2 (>= 0.9.1), penalized
Matrix, reshape2, ggplot2 (>= 1.0.0), penalized, nnet
batchtools (>= 0.9.11), future, parallelMap, RColorBrewer (>=
1.1-2), testthat, tosca
RColorBrewer (>= 1.1-2), testthat, tosca
covr, RColorBrewer (>= 1.1-2), testthat, tosca
knitr, markdown, rmarkdown, testthat, roxygen2, doParallel
knitr, testthat, depmixS4, roxygen2, scales, shape
knitr, testthat, depmixS4, roxygen2, R.rsp, shape
testthat, covr, knitr, rmarkdown, updog (>= 2.0.2)
testthat, covr, knitr, rmarkdown, updog (>= 2.0.2),
VariantAnnotation
GA, knitr, rmarkdown, testthat, ggplot2, patchwork, doFuture,
future
covr, testthat, knitr, rmarkdown, shinytest, dplyr, htmltools
covr, testthat, knitr, rmarkdown, shinytest, dplyr,
htmltools, raster, rmapshaper, shinycssloaders
clipr, gdalUtils, leafgl, mapdeck, plainview, stars
clipr, leafgl, mapdeck, plainview, rgdal, stars
colourvalues, shiny, testthat (>= 2.1.0)
knitr, maps, shiny, testit (>= 0.4), rgdal, R6, RJSONIO
knitr, maps, sf, shiny, testit (>= 0.4), rgdal, rgeos, R6,
RJSONIO, purrr, testthat
knitr, maps, sf, shiny, rgdal, rgeos, R6, RJSONIO, purrr,
testthat
knitr, maps, sf (>= 0.9-6), shiny, rgdal, rgeos, R6, RJSONIO,
purrr, testthat
knitr, maps, sf (>= 0.9-6), shiny, rgdal, rgeos, R6, RJSONIO,
purrr, testthat (>= 3.0.0), s2
V8, dplyr, geojsonio, purrr, readr, stringr, rmapshaper,
htmlTable, memoise
V8, dplyr, geojsonio, purrr, readr, rmapshaper, htmlTable,
memoise
jsonlite, shiny, sf, geojsonsf, sp, testthat (>= 2.1.0), covr
jsonlite, shiny, sf, geojsonsf, sp, testthat (>= 2.1.0),
fontawesome, htmlwidgets, covr
knitr, rmarkdown, dplyr, shiny, manipulateWidget
knitr, rmarkdown, dplyr, shiny, manipulateWidget, testthat,
covr
leaflet, testthat, magrittr, raster, rgdal, covr, knitr,
rmarkdown
leaflet, raster, rgdal, magrittr, testthat, knitr, rmarkdown
testthat (>= 3.0.0), knitr, rmarkdown, tidyverse, scales
callr, DBI (>= 0.4-1), httpuv, later, reticulate, RSQLite,
rstudioapi (>= 0.11), shinytest2, testthat (>= 3.0.3)
knitr, rmarkdown, spdep (>= 1.1-3), Matrix
Mcomp, numDeriv, testthat, knitr, rmarkdown, doMC,
doParallel, foreach
numDeriv, testthat, knitr, rmarkdown, doMC, doParallel,
foreach
testthat, rmarkdown, knitr, magrittr, purrr, stringr, tibble
testthat, knitr, rmarkdown, devtools, pacman
testthat (>= 3.0.0), knitr, rmarkdown, devtools, pacman
covr, testthat, spelling, knitr, rmarkdown, igraph,
RColorBrewer
data.table, tibble, devtools, covr, testthat, spelling,
knitr, rmarkdown, RColorBrewer
bipartite, covr, data.table, devtools, graphsim, knitr,
multiplex, multinet, markdown, network, RColorBrewer,
rmarkdown, spelling, testthat, tibble
bipartite, covr, data.table, devtools, graphsim, knitr,
markdown, RColorBrewer, rmarkdown, spelling, testthat, tibble
bipartite, covr, data.table, devtools, graphsim, knitr,
multiplex, multinet, multinets, mully, markdown, network,
RColorBrewer, rmarkdown, spelling, testthat, tibble
bipartite, covr, data.table, devtools, graphsim, knitr,
markdown, multiplex, multinet, network, qpdf, RColorBrewer,
remotes, rmarkdown, spelling, testthat, tibble
bipartite, covr, data.table, devtools, graphsim, knitr,
markdown, multiplex, multinet, network, RColorBrewer, remotes,
rmarkdown, spelling, testthat, tibble
knitr, rmarkdown, testthat (>= 3.0.0), dplyr, tidyr, future,
furrr, RColorBrewer, microbenchmark
rmarkdown, stringr, dplyr, tidyverse, testthat
knitr, rmarkdown, covr, roxygen2, testthat
bslib, yaml, covr, sass, htmltools, packer, shiny, testthat
(>= 3.0.0), pkgload
covr, knitr, maptools, rmarkdown, sf, sp, testthat, viridis
MBESS, leaps, car, foreign, scatterplot3d
MBESS, leaps, car, foreign, rgl, triangle
KernSmooth, rmarkdown, wesanderson, haven, triangle
KernSmooth, rmarkdown, wesanderson, haven, readODS, triangle
knitr, rmarkdown, DESeq2, SummarizedExperiment, airway
compiler, igraph, knitr, Rcgmin, stargazer
knitr, digest, igraph, plm, R2Cuba, cubature, numDeriv
knitr, digest, igraph, plm, cubature, numDeriv, data.table
knitr, digest, igraph, plm, cubature(>= 1.3-1), numDeriv,
data.table
knitr, digest, igraph, plm, cubature(>= 2.0.3), numDeriv,
data.table, alpaca
knitr, digest, igraph, plm, cubature (>= 2.0.3), numDeriv,
data.table, alpaca, testthat
covr, crayon, data.table, DBI, desc, future, future.apply,
glue, gmailr, jsonlite, knitr, RMariaDB, rmarkdown, RMySQL,
RPostgres, RPostgreSQL, RPushbullet, RSQLite (>= 2.0),
sendmailR, testthat, tibble, tools, utils, whoami
covr, crayon, data.table, DBI, desc, future, future.apply,
glue, gmailr, jsonlite, knitr, rmarkdown, sendmailR, RSQLite,
RMariaDB, RPostgres, RMySQL, RPostgreSQL, rprojroot, testthat,
tibble, tools, utils, whoami, yaml
covr, crayon, data.table, DBI, desc, future, future.apply,
glue, gmailr, jsonlite, knitr, RMariaDB, rmarkdown, rotor (>=
0.2.2), RPostgres, rprojroot, RSQLite, sendmailR, testthat,
tibble, tools, utils, whoami, yaml
cli, covr, crayon, data.table, DBI, desc, future,
future.apply, glue, gmailr, jsonlite, knitr, RMariaDB,
rmarkdown, rotor (>= 0.2.2), RPostgres, rprojroot, RPushbullet,
RSQLite, sendmailR, testthat, tibble, tools, utils, whoami,
yaml
cli, covr, crayon, data.table, DBI, desc, future,
future.apply, glue, gmailr, jsonlite, knitr, RMariaDB,
rmarkdown, rotor (>= 0.2.2), RPostgres, rprojroot, RPushbullet,
RSQLite, rsyslog, sendmailR, testthat, tibble, tools, utils,
whoami, yaml
cli, covr, crayon, data.table, desc, future, future.apply,
glue, jsonlite, knitr, rmarkdown, rotor (>= 0.3.0), rprojroot,
testthat, tibble, tools, utils, whoami, yaml
cli, covr, crayon, data.table, desc, future, future.apply,
glue, jsonlite, knitr, rmarkdown, rotor (>= 0.3.5), rprojroot,
testthat, tibble, tools, utils, whoami, yaml
covr, DBI, gmailr, jsonlite, RMariaDB, RPostgres,
RPushbullet, RSQLite, rsyslog, sendmailR, testthat, knitr,
rmarkdown
covr, DBI, elastic, gmailr, jsonlite, knitr, RMariaDB,
rmarkdown, RPostgres, RPushbullet, RSQLite, rsyslog, sendmailR,
testthat
testthat, DoE.base, knitr, rmarkdown, covr
testthat, assertthat, DoE.base, knitr, rmarkdown, covr
testthat, assertthat, DoE.base, knitr, rmarkdown
mclust, fpc, NbClust, modeest, pastecs, vegan
assertr, testthat, knitr, magrittr, rmarkdown
testthat, knitr, rmarkdown, foreign, magrittr
testthat, knitr, rmarkdown, foreign, magrittr, utils, logr
testthat, knitr, rmarkdown, foreign, magrittr, utils, logr,
covr, fmtr
EBImage, concaveman, crayon, hexbin, mapview, progress,
testthat, knitr, rmarkdown
EBImage, concaveman, crayon, hexbin, mapview, mapedit,
progress, testthat, knitr, rmarkdown
EBImage, concaveman, crayon, gstat, hexbin, mapview, mapedit,
progress, testthat, knitr, rmarkdown
EBImage, concaveman, crayon, gstat, hexbin, mapview, mapedit,
progress, testthat (>= 2.1.0), knitr, rmarkdown
EBImage, concaveman, crayon, geometry, gstat, hexbin,
mapview, mapedit, progress, testthat (>= 2.1.0), knitr,
rmarkdown, covr
EBImage, concaveman, crayon, gstat, hexbin, mapview, mapedit,
progress, testthat (>= 2.1.0), knitr, rmarkdown, covr
EBImage, gstat, RCSF, rgeos, mapview, mapedit, progress,
rgdal (>= 1.5-8), testthat (>= 2.1.0), knitr, rmarkdown
EBImage, future, geometry, gstat, RCSF, RMCC, rgdal, mapview,
mapedit, progress, testthat (>= 2.1.0), knitr, rmarkdown
demography, forecast, testthat, knitr, rmarkdown
demography, forecast, testthat, knitr, formatR, StMoMo,
rmarkdown
covr, crayon, knitr, rmarkdown, testthat (>= 2.1.0)
covr, crayon, knitr, rmarkdown, testthat (>= 3.0.1), tibble
covr, crayon, lintr, tidyverse, knitr, rmarkdown, testthat
(>= 3.0.1), tools, tibble, vctrs
covr, crayon, knitr, lintr, rmarkdown, testthat (>= 3.0.1),
tibble, tidyverse, tools, vctrs
covr, crayon, knitr, lintr, rmarkdown, testthat (>= 3.0.1),
tibble, tidyverse, tools, vctrs, withr
knitr, pavo, rmarkdown, spelling, testthat (>= 2.0.0)
digest, knitr, pavo, rmarkdown, spelling, testthat (>= 2.0.0)
digest, knitr, pavo, rmarkdown, spelling, testthat (>=
3.0.0), withr
knitr (>= 1.7), testthat (>= 0.9.1), rmarkdown
xgboost, testthat, mlr, text2vec, MASS, covr, knitr,
rmarkdown, devtools
xgboost, testthat, mlr, h2o, text2vec, MASS, covr, knitr,
rmarkdown, devtools
xgboost, testthat, mlr, h2o, text2vec, MASS, covr, knitr,
rmarkdown, devtools, keras
xgboost, testthat, mlr, h2o, text2vec, MASS, covr, knitr,
rmarkdown, devtools, magick, keras, ranger
xgboost, testthat, mlr, h2o, text2vec, MASS, covr, knitr,
rmarkdown, sessioninfo, magick, keras, ranger
xgboost, testthat, mlr, h2o, text2vec, MASS, covr, knitr,
rmarkdown, sessioninfo, magick, keras, htmlwidgets, shiny,
shinythemes, ranger
Rtsne, knitr, rmarkdown, covr, ggplot2, testthat
statmod (>= 1.0.6), MASS, splines, sma, vsn
affy, marray, MASS, splines, sma, statmod (>= 1.2.2), vsn
statmod (>= 1.2.2), MASS, splines, sma, vsn
affy, MASS, splines, sma, statmod (>= 1.2.2), vsn
affy, MASS, splines, sma, statmod (>= 1.2.2)
ggplot2, ggrepel, knitr, parallel, sticky, testthat
callr, covr, dplyr, knitr, magrittr, outbreaks, rmarkdown,
testthat, tibble
Rcpp (>= 0.10.5), testthat, DiceDesign, doMC, viridis,
tikzDevice
Rcpp (>= 0.10.5), testthat, DiceDesign, viridis, tikzDevice
Rcpp (>= 0.10.5), testthat, viridis, tikzDevice
roxygen2, knitr, rmarkdown, devtools, testthat
knitr, rmarkdown, testthat, devtools, roxygen2
crosstalk, knitr, rmarkdown, testthat, lintr, remotes,
styler, shiny
knitr, rmarkdown, splot, testthat (>= 2.1.0)
knitr, rmarkdown, testthat, covr, MASS, sp, rgeos, rgdal,
ggplot2
knitr, rmarkdown, testthat, covr, MASS, sp, rgeos, ape
knitr, rmarkdown, testthat, covr, MASS, sp, rgeos, rgdal,
ggplot2, ape
knitr, rmarkdown, rgdal, raster, sp, RSAGA, rgrass7
knitr, rmarkdown, rgdal, raster, sp, RSAGA, rgrass7, curl,
listviewer
knitr, rmarkdown, rgdal, sp, RSAGA, rgrass7, curl,
listviewer, markdown
knitr, rmarkdown, rgdal, sp, RSAGA, rgrass7, curl, listviewer
knitr, rmarkdown, rgdal, sp, RSAGA, rgrass7, rgrass, curl,
listviewer, markdown
htmltools, knitr, rmarkdown, testthat, covr
covr, httr (>= 1.2.1), mockery, patrick, pkgdown, rmarkdown,
rstudioapi (>= 0.2), testthat (>= 3.0.0), tibble, withr
covr, httr (>= 1.2.1), mockery, patrick, pkgdown, rmarkdown,
rstudioapi (>= 0.2), testthat (>= 3.0.0), tibble, withr (>=
2.5.0)
knitr, rmarkdown, e1071, deldir, testthat
testthat, magrittr, zeallot, rlang, tibble, purrr
testthat, rmarkdown, knitr, dplyr (>= 1.0.0)
DT, ggplot2, testthat, purrr, rmarkdown, knitr
testthat, knitr, roxygen2, devtools, rmarkdown
knitr, rmarkdown, minidown, docopt, rcmdcheck, foghorn
knitr, rmarkdown, testthat, glmnet, e1071
knitr, rmarkdown, testthat, glmnet, covr, DALEX
knitr, rmarkdown, testthat, glmnet, covr, DALEX, RWeka, mda,
modeltools
knitr, rmarkdown, testthat, glmnet, e1071, covr
knitr, rmarkdown, testthat, glmnet, e1071, covr, DALEX
RWeka, FSelector, e1071, flexclust, testthat
mlmRev, MEMSS, coda, MASS, sfsmisc, MatrixModels
boot, PKPDmodels, MEMSS, testthat, ggplot2, mlmRev, optimx
(>= 2013.8.6), plyr, reshape, Rcpp (>= 0.10.1), RcppEigen (>=
0.3.1.2)
boot, PKPDmodels, MEMSS, testthat, ggplot2, mlmRev, optimx
(>= 2013.8.6), plyr, reshape, Rcpp (>= 0.10.1), RcppEigen (>=
0.3.1.2.3)
boot, PKPDmodels, MEMSS, testthat, ggplot2, mlmRev, optimx
(>= 2013.8.6), plyr, reshape, RcppEigen (>= 0.3.1.2.3)
knitr, boot, PKPDmodels, MEMSS, testthat (>= 0.8.1), ggplot2,
mlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, HSAUR2, numDeriv
knitr, boot, PKPDmodels, MEMSS, testthat (>= 0.8.1), ggplot2,
mlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, HSAUR2,
numDeriv, car, dfoptim
knitr, rmarkdown, PKPDmodels, MEMSS, testthat (>= 0.8.1),
ggplot2, mlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, HSAUR2,
numDeriv, car, dfoptim
knitr, rmarkdown, PKPDmodels, MEMSS, testthat (>= 0.8.1),
ggplot2, mlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, HSAUR3,
numDeriv, car, dfoptim, mgcv
knitr, rmarkdown, PKPDmodels, MEMSS, testthat (>= 0.8.1),
ggplot2, mlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, HSAUR3,
numDeriv, car, dfoptim, mgcv, statmod, rr2, semEff
knitr, rmarkdown, PKPDmodels, MEMSS, testthat (>= 0.8.1),
ggplot2, mlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, HSAUR3,
numDeriv, car, dfoptim, mgcv, statmod, rr2, semEff, tibble
knitr, rmarkdown, MEMSS, testthat (>= 0.8.1), ggplot2,
mlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, HSAUR3,
numDeriv, car, dfoptim, mgcv, statmod, rr2, semEff, tibble,
merDeriv
boot, PKPDmodels, MEMSS, testthat, ggplot2, mlmRev, optimx
(>= 2013.8.6), plyr, reshape, pbkrtest
knitr, boot, PKPDmodels, MEMSS, testthat (>= 0.8.1), ggplot2,
mlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest
covr, testthat (>= 2.1.0), knitr, rmarkdown, scdhlm, dplyr,
tidyr, mlmRev, carData, lme4, merDeriv
covr, testthat (>= 2.1.0), knitr, rmarkdown, scdhlm, mlmRev,
carData, lme4, Matrix, merDeriv
lme4 (>= 1.1-7), nlme, testthat, mlmRev, knitr, rmarkdown,
doParallel, foreach
bookdown, coda, covr, ggplot2, knitr, mgcv, mvtnorm,
numDeriv, patchwork, rmarkdown, testthat (>= 3.0.0)
car, strucchange, sandwich, dynlm, survival
car, strucchange, sandwich, dynlm, survival, AER
car, strucchange, sandwich, dynlm, stats4, survival, AER
testthat (>= 2.1.0), covr, rmarkdown, knitr, ranger, twang
testthat (>= 2.1.0), covr, rmarkdown, knitr, ranger, twang,
markdown
testthat, knitr, rmarkdown, R.rsp, MASS, plotly (>= 4.7.1)
brolgar, covr, fabletools, feasts, knitr, lifecycle, purrr,
rmarkdown, stats, testthat (>= 3.0.0), utils
covr, pillar, pkgdown, testthat (>= 3.0.0)
covr, h2o, mlbench, randomForest, stats, testthat, utils
covr, knitr, rmarkdown, randomForest, DALEX, testthat
covr, knitr, rmarkdown, randomForest, testthat
testthat (>= 2.1.0), knitr, rmarkdown, kableExtra, devtools
shiny, plumber, testthat (>= 3.0.0), covr
futile.logger, knitr, lgr, logger, logging, microbenchmark,
rmarkdown, testthat
futile.logger, httr, jsonlite, knitr, lgr, logger, logging,
loggit, microbenchmark, rlog, rmarkdown, rsyslog, testthat
glue, jsonlite, crayon, slackr, RPushbullet, testthat, covr,
knitr, rmarkdown, devtools, roxygen2, parallel
glue, pander, jsonlite, crayon, slackr, RPushbullet,
telegram, testthat, covr, knitr, rmarkdown, devtools, roxygen2,
parallel, rsyslog, shiny, callr, txtq, botor, R.utils,
syslognet
glue, pander, jsonlite, crayon, slackr (>= 1.4.1),
RPushbullet, telegram, testthat, covr, knitr, rmarkdown,
devtools, roxygen2, parallel, rsyslog, shiny, callr, txtq,
botor, R.utils, syslognet
sparseMVN, matrixcalc, XML, RCurl, quantmod
rARPACK (>= 0.10-0), testthat (>= 0.11.0), knitr, rmarkdown
RUnit, knitr, markdown, ggplot2, reshape2
dplyr, fastDummies, knitr, rmarkdown, here, ggplot2, testthat
dplyr, fastDummies, ggplot2, ggrepel, here, kableExtra,
knitr, rmarkdown, testthat, tidyr
apollo, broom, dplyr, fastDummies, ggplot2, ggrepel, gmnl,
gtsummary, here, kableExtra, knitr, mixl, mlogit, rmarkdown,
testthat, texreg, tidyr
survey, boot, ellipse, parallel, knitr, rmarkdown
survey (>= 3.34), boot, ellipse, parallel, knitr, rmarkdown
markdown, rmarkdown, testthat, knitr, dplyr, ggplot2,
mvtnorm, purrr, tidyr
testthat, knitr, dplyr, ggplot2, mvtnorm, purrr, tidyr
knitr, rmarkdown, testthat, tidylog, dplyr, utils
knitr, rmarkdown, testthat, tidylog, dplyr
knitr, rmarkdown, testthat, tidylog, dplyr, covr
testthat (>= 3.0.0), knitr, rmarkdown, withr, covr, pkgdown,
Tplyr, haven, here
knitr, rmarkdown, parallel, randomForest, latex2exp
knitr, rmarkdown, parallel, randomForest, latex2exp,
testthat, covr
testthat, inline, knitr, rmarkdown, ergm, BH, igraph
testthat (>= 3.0.0), knitr, rmarkdown, dplyr, tidyr, ggplot2,
ggalluvial, FactoMineR, factoextra, lme4, purrr
gee, testthat, methods, knitr, rmarkdown
knitr, rmarkdown, rstan, rstanarm, testthat
bayesplot (>= 1.5.0), knitr, rmarkdown, rstan, rstanarm,
rstantools, testthat
bayesplot (>= 1.5.0), brms (>= 2.2.0), ggplot2, knitr,
rmarkdown, rstan, rstanarm (>= 2.17.4), rstantools, spdep,
testthat
bayesplot (>= 1.7.0), brms (>= 2.10.0), ggplot2, graphics,
knitr, rmarkdown, rstan, rstanarm (>= 2.19.0), rstantools,
spdep, testthat (>= 2.1.0)
maps, sp, graph, scagnostics, PairViz, RColorBrewer,
RnavGraphImageData, rworldmap, rgl, Rgraphviz, RDRToolbox,
kernlab, scales, MASS, dplyr, testthat, knitr, rmarkdown
maps, sp, graph, scagnostics, PairViz, RColorBrewer,
RnavGraphImageData, rworldmap, rgl, Rgraphviz, RDRToolbox,
kernlab, scales, MASS, testthat, knitr, rmarkdown
maps, sp, graph, scagnostics, PairViz, RColorBrewer,
RnavGraphImageData, rworldmap, rgl, Rgraphviz, RDRToolbox,
kernlab, scales, MASS, testthat, knitr, rmarkdown, png,
ElemStatLearn, formatR
maps, sp, graph, scagnostics, PairViz, RColorBrewer,
loon.data, rworldmap, rgl, Rgraphviz, RDRToolbox, kernlab,
scales, MASS, testthat, knitr, rmarkdown, png, ElemStatLearn,
formatR
maps, sp, graph, scagnostics, PairViz, RColorBrewer,
loon.data, rworldmap, rgl, Rgraphviz, RDRToolbox, kernlab,
scales, MASS, testthat, knitr, rmarkdown, png, formatR, covr
maps, sp, graph, scagnostics, PairViz, RColorBrewer,
loon.data, rworldmap, mgcv, rgl, Rgraphviz, RDRToolbox,
kernlab, scales, MASS, testthat, knitr, rmarkdown, png,
formatR, covr
png, tools, testthat, knitr, rmarkdown, tidyverse, covr,
maps, nycflights13
magrittr, tidyr, dplyr, gtable, png, tools, tibble, testthat,
knitr, rmarkdown, tidyverse, covr, maps, hexbin, nycflights13,
ggplot2movies
magrittr, tidyr, dplyr, gtable, png, tools, tibble, testthat,
knitr, rmarkdown, covr, maps, hexbin, nycflights13,
ggplot2movies
GGally, magrittr, tidyr, zenplots, dplyr, gtable, png, tools,
tibble, testthat, knitr, rmarkdown, covr, maps, hexbin,
nycflights13, ggplot2movies
dplyr, ggmulti, tools, testthat, knitr, rmarkdown, tidyverse,
covr, png
magrittr, dplyr, ggmulti, tools, testthat, knitr, rmarkdown,
tidyverse, covr, png
class, RDRToolbox, magrittr, tidyverse, testthat, knitr,
rmarkdown, markdown, covr
class, magrittr, tidyverse, testthat, knitr, rmarkdown,
markdown, covr
knitr, rmarkdown, devtools, roxygen2, testthat, survival
biomaRt, knitr, rmarkdown, devtools, roxygen2, testthat,
survival
biomaRt, knitr, rmarkdown, roxygen2, testthat, survival
testthat, covr, knitr, rmarkdown, Matrix, microbenchmark,
ggplot2
ggplot2, knitr, Matrix, microbenchmark, rmarkdown, testthat
testthat, ggpubr, gridExtra, httr, readxl
testthat, httr, readxl, knitr, rmarkdown, quantmod, zoo, vars
testthat, httr, ggpubr, readxl, knitr, rmarkdown, quantmod,
zoo, vars
testthat, httr, readxl, knitr, rmarkdown, zoo, vars
testthat, readxl, knitr, rmarkdown, zoo, vars
testthat (>= 3.0.0), readxl, knitr, ggpubr, rmarkdown, zoo,
vars
knitr, rmarkdown, testthat (>= 3.0.0), mvtnorm
knitr, rmarkdown, rpact, mvtnorm, testthat (>= 3.0.0)
nlme, lme4, pbkrtest, lattice, multcompView
nlme, lme4, pbkrtest, lattice, multcompView, car
nlme, lme4, pbkrtest (>= 0.4-1), lattice, multcompView, car,
mediation
pbkrtest (>= 0.4-1), lattice, multcompView, car, mediation,
ordinal
car, lattice, MCMCpack, mediation, multcompView, ordinal,
pbkrtest (>= 0.4-1)
car, lattice, MCMCpack, mediation, multcompView, ordinal,
pbkrtest (>= 0.4-1), afex, CARBayes, coxme, gee, geepack,
glmmADMB, lme4.0, lme4, MASS, MCMCglmm, nlme, survival
car, lattice, MCMCpack, mediation, multcompView, ordinal,
pbkrtest (>= 0.4-1), afex, CARBayes, coxme, gee, geepack,
glmmADMB, lme4.0, lme4, MASS, MCMCglmm, survival
car, lattice, MCMCpack, mediation, multcompView, ordinal,
pbkrtest (>= 0.4-1), CARBayes, coxme, gee, geepack, glmmADMB,
lme4.0, lme4, MASS, MCMCglmm, nnet, survival
car, lattice, MCMCpack, mediation, multcompView, ordinal,
pbkrtest (>= 0.4-1), CARBayes, coxme, gee, geepack, glmmADMB,
lme4.0, lme4, MASS, MCMCglmm, nnet, pscl, survival
car, lattice, MCMCpack, mediation, multcompView, ordinal,
pbkrtest (>= 0.4-1), CARBayes, coxme, gee, geepack, glmmADMB,
lme4.0, lme4, lmerTest (>= 2.0.32), MASS, MCMCglmm, nnet, pscl,
survival
car, lattice, MCMCpack, mediation, multcompView, ordinal,
pbkrtest (>= 0.4-1), CARBayes, coxme, gee, geepack, glmmADMB,
lme4.0, lme4, lmerTest (>= 2.0.32), MASS, MCMCglmm, nnet, pscl,
rsm, survival
car, lattice, MCMCpack, mediation, multcompView, ordinal,
pbkrtest (>= 0.4-1), CARBayes, coxme, gee, geepack, glmmADMB,
lme4.0, lme4, lmerTest (>= 2.0.32), MASS, MCMCglmm, nnet, pscl,
rsm, rstan, rstanarm, survival
car, lattice, MCMCpack, mediation, multcompView, ordinal,
pbkrtest (>= 0.4-1), CARBayes, coxme, gee, geepack, glmmADMB,
lme4, lmerTest (>= 2.0.32), MASS, MCMCglmm, nnet, pscl, rsm,
rstan, rstanarm, survival
testthat, knitr, rmarkdown, scales, ggplot2, broom
coda, mcmcplots, ggmcmc, knitr, ggplot2, gridExtra, reshape2
SuperLearner, memoise, DEoptim, testthat, tmle
SuperLearner, testthat, tmle, knitr, rmarkdown, nnls, arm
robustbase, rrcov, stats, mvtnorm, graphics, knitr,
rmarkdown, testthat
covr, knitr, testthat (>= 2.1.0), vctrs (>= 0.3.0), rmarkdown
covr, knitr, testthat (>= 2.1.0), vctrs (>= 0.3.0)
covr, knitr, rmarkdown, testthat (>= 2.1.0), vctrs (>= 0.5.0)
broom, dplyr, knitr, lattice, lme4, rjags, testthat
broom, dplyr, knitr, lattice, lme4, rjags, rmarkdown, sommer,
testthat
caret, rpart, randomForest, gsubfn, Hmisc, plyr,
RColorBrewer,
testthat, sf (>= 0.5), sp, rgdal, datasets, covr
testthat (>= 2.1.0), sf (>= 0.7), sp, rgdal, datasets, covr,
ggplot2
knitr, rmarkdown, testthat (>= 3.0.0), covr, Metrics, withr,
vdiffr, ggplot2, dplyr
knitr, rmarkdown, testthat (>= 3.0.0), covr, Metrics, withr,
vdiffr, ggplot2, dplyr, torchvision
covr, devtools, forcats, fs, git2r, knitr, lme4, rmarkdown,
testthat, usethis, vdiffr, withr
adehabitatLT, moveHMM, knitr, DiagrammeR, rmarkdown
knitr, rmarkdown, microbenchmark, testthat, R.rsp
ggplot2, knitr, testthat (>= 3.0.0), rmarkdown, zeallot
dplyr (>= 1.0.6), knitr, magrittr, rmarkdown (>= 2.6),
stringr, tibble, tidyr
tseries, pastecs, locfit, tseriesChaos, RTisean,
tsDyn, forecast
tseries, pastecs, locfit, tseriesChaos,
RTisean, tsDyn, forecast
tseries, pastecs, locfit, tseriesChaos, RTisean, tsDyn,
forecast
tseries, pastecs, locfit, tseriesChaos, tsDyn, forecast
knitr, rmarkdown, alluvial, grDevices, RColorBrewer, testthat
(>= 2.1.0)
Biostrings, BiocManager, RSQLite, convert, marray, GEOquery,
GEOmetadb, amap, RBGL, WGCNA, KEGGREST, KEGGgraph, cairoDevice,
pdInfoBuilder, lumi, oligo, graph, affy, genefilter,
simpleaffy, beadarray, GOstats, GO.db, globaltest, Category,
annotate
tkrplot, gWidgets2, Rgraphviz, ssize, Biostrings,
BiocManager, RSQLite, GEOquery, GEOmetadb, RBGL, WGCNA,
KEGGREST, KEGGgraph, pdInfoBuilder, lumi, oligo, graph, affy,
genefilter, beadarray, GOstats, GO.db, Category, annotate,
impute, limma, graphics, methods, stats
devtools, forestinventory, knitr, microbenchmark, nlme,
pkgload, rmarkdown, rprojroot, RUnit, testthat
devtools, forestinventory, knitr, microbenchmark, nlme,
pkgload, rmarkdown, rprojroot, RUnit, R.rsp, testthat
devtools, forestinventory, JoSAE, knitr, microbenchmark,
nlme, pkgload, rmarkdown, rprojroot, rsae, RUnit, R.rsp, sae,
testthat
testthat (>= 3.0.0), rmarkdown, knitr, kableExtra
mixtools, ICsurv, interval, knitr, rmarkdown
mixtools, ICsurv, coxinterval, knitr, rmarkdown, pbapply
mixtools, ICsurv, coxinterval, knitr, rmarkdown, pbapply,
markdown, ks, multimode
mixtools, ICsurv, knitr, rmarkdown, pbapply, markdown, ks,
multimode
ggplot2, RSQLite, broom, knitr, ggmap, leaflet, rmarkdown,
clifro, testthat
ggplot2, dbplyr, RSQLite, broom, knitr, ggmap, leaflet,
rmarkdown, clifro, testthat
ggplot2, dbplyr, RSQLite, broom, knitr, ggmap, leaflet,
rmarkdown, mgcv, clifro, testthat
ggplot2, dbplyr, RSQLite, broom, knitr, leaflet, purrr,
rmarkdown, mgcv, clifro, testthat
ggplot2, dbplyr, RSQLite, broom, knitr, leaflet, purrr,
rmarkdown, markdown, mgcv, clifro, testthat
knitr, tinytest, utils, rmarkdown, stats
testthat, dplyr, tidyr, lubridate, SharpeR, sandwich,
formatR, knitr
igraph(>= 1.0.1), knitr, rmarkdown, testthat, ggplot2
knitr, rmarkdown, testthat, tibble, ggplot2, covr
testthat, knitr, rmarkdown, data.tree, units, udunits2, ncdf4
testthat, knitr, rmarkdown, reshape2, data.tree, raster,
units, udunits2, ncdf4
testthat, knitr, rmarkdown, reshape2, data.tree, raster,
units(>= 0.7.0), udunits2, ncdf4, covr
testthat, knitr, rmarkdown, reshape2, data.tree, raster,
ncdf4, covr
testthat, mvtnorm, covr, knitr, MASS, rmarkdown, markdown
knitr, rmarkdown, magrittr, rsvg, webp, png, pdftools,
ggplot2, raster
knitr, rmarkdown, magrittr, rsvg, webp, png, pdftools,
ggplot2, raster, rgdal
knitr, rmarkdown, magrittr, rsvg, webp, png, pdftools,
ggplot2, raster, rgdal, gapminder, tesseract
knitr, rmarkdown, rsvg, webp, png, pdftools, ggplot2, raster,
rgdal, gapminder, tesseract
rmarkdown, rsvg, webp, png, pdftools, ggplot2, raster, rgdal,
gapminder, tesseract
spelling, methods, rmarkdown, rsvg, webp, png, pdftools,
ggplot2, raster, rgdal, gapminder, tesseract
spelling, jsonlite, methods, rmarkdown, rsvg, webp, png,
pdftools, ggplot2, raster, rgdal, gapminder, IRdisplay,
tesseract
spelling, jsonlite, methods, rmarkdown, rsvg, webp, png,
pdftools, ggplot2, raster, rgdal, gapminder, IRdisplay,
tesseract (>= 2.0)
av, spelling, jsonlite, methods, knitr, rmarkdown, rsvg,
webp, pdftools, ggplot2, raster, rgdal, gapminder, IRdisplay,
tesseract (>= 2.0), gifski
av (>= 0.3), spelling, jsonlite, methods, knitr, rmarkdown,
rsvg, webp, pdftools, ggplot2, raster, rgdal, gapminder,
IRdisplay, tesseract (>= 2.0), gifski
av (>= 0.3), spelling, jsonlite, methods, knitr, rmarkdown,
rsvg, webp, pdftools, ggplot2, gapminder, IRdisplay, tesseract
(>= 2.0), gifski
dittoSeq, BiocStyle, vcr, webmockr, testthat, knitr,
rmarkdown
spelling, covr, knitr, testthat (>= 2.1.0), here
spelling, covr, knitr, testthat (>= 2.1.0), here, mockery,
readr
spelling, withr, covr, knitr, testthat (>= 2.1.0), here,
mockery, readr
igraph, roxygen2, knitr, rmarkdown, testthat
knitr, covr, testthat (>= 3.0.0), withr, rmarkdown
knitr, covr, testthat (>= 3.0.0), withr, rmarkdown, webshot,
visNetwork
knitr, rmarkdown, testthat, ggraph, dirmult, Rmpfr
testthat, knitr, rmarkdown, palettetown, tibble
testthat, knitr, rmarkdown, palettetown, magrittr, tibble
testthat, knitr, rmarkdown, palettetown, magrittr, tibble,
rdhs
knitr, rmarkdown, testthat, R.rsp, devtools (>= 1.7.0)
knitr, rmarkdown, magrittr, testthat, R.rsp, devtools (>=
1.7.0)
knitr, rmarkdown, testthat, R.rsp, haven, readxl, devtools
(>= 1.7.0)
knitr, rmarkdown, testthat, R.rsp, haven, readxl, devtools
(>= 1.7.0), formatR, highr
knitr, rmarkdown, testthat (>= 1.0.2), R.rsp, haven (>=
1.0.0), readxl (>= 1.0.0), devtools (>= 1.7.0), formatR, highr
dygraphs, leaflet, plotly, xts, rmarkdown, testthat, covr
dygraphs, leaflet, plotly, xts, knitr, rmarkdown
dygraphs, leaflet, plotly, xts, rmarkdown
testthat, anytime, mice, withr, haven, readxl, readr, knitr,
rmarkdown
knitr, rmarkdown, testthat, covr, markdown
knitr, rmarkdown, semPlot, semptools, testthat (>= 3.0.0)
tmap (>= 3.0.0), rgdal, tinytest, tibble, knitr, rmarkdown
tmap (>= 3.0.0), rgdal, tinytest, tibble
knitr, rgdal, rmarkdown, testthat (>= 3.0.0), tibble, tmap
(>= 3.0.0)
knitr, minqa, testthat (>= 3.0.0), tibble
mapdeck, tigris, tidycensus, tmap, ggspatial
ggspatial, mapdeck, tigris, tidycensus, tmap
ggspatial, grDevices, mapdeck, tigris, tidycensus, tmap,
testthat (>= 3.0.0)
ggspatial, grDevices, mapdeck, tigris, tidycensus, tmap,
mapboxer, testthat (>= 3.0.0)
covr, geojsonsf, knitr, rmarkdown, sf, testthat
covr, jsonlite, knitr, rmarkdown, sf, spatialwidget, testthat
covr, googleway, jsonlite, knitr, rmarkdown, spatialwidget,
testthat
progress (>= 1.0), grDevices, sp (>= 1.3), latticeExtra
ggplot2 (>= 2.3), grDevices, latticeExtra, sp (>= 1.3),
progress
grDevices, ggplot2 (>= 2.3), latticeExtra, sp (>= 1.3),
progress
DiagrammeR, exactextractr, ggplot2, knitr, lwgeom, rmarkdown,
SPEI, testthat (>= 3.0.0)
rgdal, geostatsp, knitr,geonames, RColorBrewer, classInt
RColorBrewer, geonames, classInt, rgdal, knitr
RColorBrewer, geonames, classInt, rgdal, rgeos, geosphere,
knitr, dismo
RColorBrewer, classInt, rgdal, rgeos, geosphere, knitr, dismo
RColorBrewer, classInt, rgdal, rgeos, geosphere, knitr
RColorBrewer, classInt, rgdal, rgeos, geosphere, knitr,
markdown
knitr (>= 1.8), DiagrammeR(>= 1.0.6.1), rmarkdown
knitr, DiagrammeR(>= 1.0.6.1), rmarkdown, validate, unrepx
testthat, RColorBrewer, updog, covr, polymapR
testthat, RColorBrewer, updog, covr, polymapR, fitPoly
testthat, updog, fitPoly, polymapR, AGHmatrix, gatepoints,
knitr, rmarkdown
smacof, testthat, updog, fitPoly, polymapR, AGHmatrix,
gatepoints, knitr, rmarkdown
testthat, ggmap, knitr, taxize, maptools
testthat, ggmap, knitr, taxize, maptools, covr
testthat, knitr, taxize, maptools, rgbif
testthat, knitr, taxize, maptools, rgbif, scrubr
mapproj (>= 1.2-0), mapdata (>= 2.2-4), sp, maptools
mapproj (>= 1.2-0), mapdata (>= 2.3.0), sp, maptools,
rnaturalearth
mapproj (>= 1.2-0), mapdata (>= 2.3.0), sp, rnaturalearth
knitr, ggplot2, class,KernSmooth, dplyr, sf
knitr, rmarkdown, leaflet, ggplot2, dplyr
dplyr, ggplot2, gibble, jpeg, knitr, lwgeom, mapview, mmand,
osmdata, polyclip, rmarkdown, spelling, testthat
raster, rgdal, lwgeom, knitr, rmarkdown, tinytest, covr
terra, png, jpeg, lwgeom, knitr, rmarkdown, tinytest, covr
spatstat, PBSmapping, maps, gpclib, RArcInfo
spatstat (>= 1.18), PBSmapping, maps, rgeos (>= 0.1-8),
gpclib, RArcInfo
spatstat (>= 1.18), PBSmapping, maps, rgeos (>= 0.1-8),
gpclib, RArcInfo, RColorBrewer
rgeos (>= 0.1-8), spatstat (>= 1.18), PBSmapping,
RColorBrewer
rgeos (>= 0.1-8), spatstat (>= 1.18), foreign (>= 0.8),
PBSmapping, RColorBrewer, lattice
spatstat (>= 1.18), PBSmapping, maps, rgeos, gpclib, RArcInfo
rgeos (>= 0.1-8), spatstat (>= 1.18), PBSmapping, maps,
RColorBrewer
rgeos (>= 0.1-8), spatstat (>= 1.18), PBSmapping, maps,
RColorBrewer, raster, polyclip
rgeos (>= 0.1-8), spatstat (>= 1.18), PBSmapping, maps,
RColorBrewer, raster, polyclip, spatstat.utils
rgeos (>= 0.1-8), spatstat (>= 1.50), PBSmapping, maps,
RColorBrewer, raster, polyclip, spatstat.utils
rgeos (>= 0.1-8), spatstat (>= 1.60), PBSmapping, maps,
RColorBrewer, raster, polyclip, spatstat.utils
rgeos (>= 0.1-8), spatstat (>= 1.60), PBSmapping, maps,
RColorBrewer, raster, polyclip, spatstat.utils, plotrix
rgeos (>= 0.1-8), spatstat.geom (>= 1.65-0), PBSmapping,
maps, RColorBrewer, raster, polyclip, plotrix, spatstat.linnet
(>= 1.65-3), spatstat.utils (>= 1.19.0), spatstat (>= 2.0-0)
covr, knitr, later, leaflet.extras2, leafsync, lwgeom,
mapdeck, plainview, poorman, rmarkdown, rstudioapi, s2, stars,
tinytest
covr, knitr, later, leaflet.extras2, leafsync, lwgeom,
mapdeck, plainview, poorman, rgdal, rmarkdown, rstudioapi, s2,
stars, tinytest
knitr, rmarkdown, dplyr, testthat, covr, lwgeom
covr, dplyr, knitr, lwgeom, rmarkdown, testthat
covr, dplyr, knitr, lwgeom, rmarkdown, stars, testthat
covr, dplyr, knitr, lwgeom, plainview, rmarkdown, stars,
testthat
covr, dplyr, knitr, later, lwgeom, mapdeck, plainview,
rmarkdown, stars, testthat
covr, dplyr, knitr, later, leaflet.extras2, lwgeom, mapdeck,
plainview, rmarkdown, stars, testthat
bench, broom, dplyr, emmeans, ggplot2, ggbeeswarm, haven,
kableExtra, knitr, margins, modelsummary, patchwork, rlang,
rmarkdown, testthat (>= 3.0.0), tidyverse, vdiffr, AER,
betareg, bife, brglm2, crch, estimatr, fixest, gam, geepack,
glmx, ivreg, lme4, MASS, nlme, nnet, ordinal, plm, pscl,
quantreg, rms, robustbase, sandwich, speedglm, survey,
survival, truncreg, covr
bench, broom, dplyr, emmeans, ggplot2, ggbeeswarm, haven,
kableExtra, knitr, magrittr, margins, modelsummary, patchwork,
rlang, rmarkdown, testthat (>= 3.0.0), tidyverse, vdiffr, AER,
betareg, bife, brglm2, crch, estimatr, fixest, gam, geepack,
glmx, ivreg, lme4, MASS, mgcv, nlme, nnet, ordinal, plm, pscl,
quantreg, rms, robustbase, sandwich, speedglm, survey,
survival, truncreg, covr, spelling
bench, brms, broom, data.table, dplyr, emmeans, ggdist,
ggplot2, ggbeeswarm, gt, haven, kableExtra, knitr, magrittr,
margins, modelsummary, patchwork, rlang, rmarkdown, testthat
(>= 3.0.0), tidyverse, vdiffr, AER, aod, betareg, bife, brglm2,
crch, estimatr, fixest (>= 0.10.1), gam, geepack, glmx, ivreg,
lme4, MASS, mgcv, nlme, nnet, ordinal, plm, pscl, quantreg,
rms, robustbase, rstantools, rstanarm, sandwich, speedglm,
survey, survival, truncreg, covr, spelling
bench, brms, broom, data.table, dplyr, emmeans, ggdist,
ggplot2, ggbeeswarm, gt, haven, kableExtra, knitr, magrittr,
margins, modelsummary, patchwork, rlang, rmarkdown, testthat
(>= 3.0.0), tidyverse, vdiffr, AER, aod, betareg, bife, brglm2,
crch, estimatr, fixest (>= 0.10.1), gam, geepack, glmx, ivreg,
lme4, MASS, mclogit, mgcv, nlme, nnet, ordinal, plm, pscl,
quantreg, rms, robustbase, rstantools, rstanarm, sandwich,
scam, speedglm, survey, survival, truncreg, covr, spelling
bench, brms, broom, data.table, dplyr, emmeans, ggdist,
ggplot2, ggbeeswarm, gt, haven, kableExtra, knitr, magrittr,
margins, modelsummary, patchwork, rlang, rmarkdown, testthat
(>= 3.0.0), tidyverse, vdiffr, AER, aod, betareg, bife, brglm2,
crch, estimatr, fixest (>= 0.10.1), gam, geepack, glmx, ivreg,
lme4, MASS, mclogit, mgcv, nlme, nnet, ordinal, plm, pscl,
quantreg, rms, robust, robustbase, robustlmm, rstantools,
rstanarm, sandwich, scam, speedglm, survey, survival, truncreg,
covr, spelling
bench, brms, broom, data.table, dplyr, emmeans, ggdist,
ggplot2, ggbeeswarm, gt, haven, kableExtra, knitr, magrittr,
margins, modelsummary, systemfonts, patchwork, quantreg, rlang,
rmarkdown, testthat (>= 3.0.0), tidyverse, vdiffr, AER, aod,
betareg, bife, brglm2, crch, estimatr, fixest (>= 0.10.1), gam,
geepack, glmx, ivreg, lme4, lmerTest, MASS, mclogit, mgcv,
nlme, nnet, ordinal, plm, pscl, rms, robust, robustbase,
robustlmm, rstantools, rstanarm, sandwich, scam, speedglm,
survey, survival, truncreg, covr, spelling
bench, brms, broom, data.table, dplyr, emmeans, ggdist,
ggplot2, ggbeeswarm, haven, kableExtra, knitr, magrittr,
margins, modelsummary, systemfonts, patchwork, quantreg, rlang,
rmarkdown, testthat (>= 3.0.0), tidyverse, vdiffr, AER, aod,
betareg, bife, brglm2, crch, estimatr, fixest (>= 0.10.1), gam,
geepack, glmx, itsadug, ivreg, lme4, lmerTest, MASS, mclogit,
mgcv, nlme, nnet, ordinal, plm, pscl, rms, robust, robustbase,
robustlmm, rstantools, rstanarm, sampleSelection, sandwich,
scam, speedglm, survey, survival, truncreg, covr, spelling
bench, brms, broom, datawizard, dplyr, emmeans, future,
future.apply, ggdist, ggplot2, ggrepel, ggbeeswarm, haven,
kableExtra, knitr, magrittr, margins, modelsummary,
systemfonts, patchwork, quantreg, rlang, rmarkdown, testthat
(>= 3.0.0), tidyverse, vdiffr, AER, aod, betareg, bife, BH,
brglm2, brmsmargins, crch, estimatr, fixest (>= 0.10.1), gam,
geepack, glmmTMB, glmx, itsadug, ivreg, lme4, lmerTest, MASS,
mclogit, mgcv, mhurdle, mlogit, modelbased, nlme, nnet,
ordinal, plm, pscl, RcppEigen, rms, robust, robustbase,
robustlmm, rstantools, rstanarm, sampleSelection, sandwich,
scam, speedglm, survey, survival, tobit1, truncreg, withr,
covr, spelling
AER, afex, aod, bench, betareg, BH, bife, brglm2, brms,
brmsmargins, broom, covr, crch, datawizard, dplyr, emmeans,
estimatr, fixest (>= 0.10.1), future, future.apply, gam,
geepack, ggbeeswarm, ggdag, ggdist, ggplot2, ggrepel, glmmTMB,
glmx, haven, here, itsadug, ivreg, kableExtra, knitr, lme4,
lmerTest, magrittr, margins, MASS, mclogit, mgcv, mhurdle,
mice, mlogit, modelbased, modelsummary, nlme, nnet, ordinal,
patchwork, pkgdown, plm, prediction, pscl, quantreg, RcppEigen,
rlang, rmarkdown, rms, robust, robustbase, robustlmm, rstanarm,
rstantools, sampleSelection, sandwich, scam, speedglm,
spelling, survey, survival, systemfonts, tidymodels, tidyverse,
tinytest, tobit1, truncreg, tsModel, vdiffr, withr
AER, afex, aod, bench, betareg, BH, bife, biglm, brglm2,
brms, brmsmargins, broom, conflicted, covr, crch, datawizard,
dplyr, emmeans, estimatr, fixest (>= 0.10.1), future,
future.apply, gam, geepack, ggbeeswarm, ggdag, ggdist, ggplot2,
ggrepel, glmx, haven, here, itsadug, ivreg, kableExtra, knitr,
lme4, lmerTest, magrittr, margins, MASS, mclogit, mgcv,
mhurdle, mice, mlogit, modelbased, modelsummary, nlme, nnet,
ordinal, patchwork, pkgdown, plm, prediction, pscl, quantreg,
RcppEigen, rlang, rmarkdown, rms, robust, robustbase,
robustlmm, rstanarm, rstantools, sampleSelection, sandwich,
scam, speedglm, spelling, survey, survival, systemfonts,
tidymodels, tidyverse, tinytest, truncreg, tsModel, vdiffr,
withr
AER, afex, aod, bench, betareg, BH, bife, biglm, brglm2,
brms, brmsmargins, broom, collapse, conflicted, covr, crch,
datawizard, dplyr, emmeans, estimatr, fixest (>= 0.10.1),
future, future.apply, gam, gamlss, gamlss.dist, geepack,
ggbeeswarm, ggdag, ggdist, ggplot2, ggrepel, glmmTMB, glmx,
haven, here, itsadug, ivreg, kableExtra, knitr, lme4, lmerTest,
magrittr, margins, MASS, MatchIt, mclogit, mgcv, mhurdle, mice,
mlogit, modelbased, modelsummary, nlme, nnet, ordinal,
patchwork, pkgdown, plm, prediction, pscl, quantreg, RcppEigen,
rlang, rmarkdown, rms, robust, robustbase, robustlmm, rstanarm,
rstantools, sampleSelection, sandwich, scam, speedglm,
spelling, survey, survival, systemfonts, tidymodels, tidyr,
tidyverse, tinytest, titanic, truncreg, tsModel, vdiffr, withr
AER, afex, aod, bench, betareg, BH, bife, biglm, brglm2,
brms, brmsmargins, broom, collapse, conflicted, covr, crch,
datawizard, dplyr, emmeans, estimatr, fixest (>= 0.10.1),
future, future.apply, gam, gamlss, gamlss.dist, geepack,
ggbeeswarm, ggdag, ggdist, ggplot2, ggrepel, glmmTMB, glmx,
haven, here, itsadug, ivreg, kableExtra, knitr, lme4, lmerTest,
magrittr, margins, MASS, MatchIt, mclogit, mgcv, mhurdle, mice,
mlogit, modelbased, modelsummary, nlme, nnet, ordinal,
patchwork, pkgdown, plm, prediction, pscl, quantreg, RcppEigen,
remotes, rlang, rmarkdown, rms, robust, robustbase, robustlmm,
rstanarm, rstantools, sampleSelection, sandwich, scam,
speedglm, spelling, survey, survival, systemfonts, tidymodels,
tidyr, tidyverse, tinytest, titanic, truncreg, tsModel, vdiffr,
withr
AER, afex, aod, bench, betareg, BH, bife, biglm, brglm2,
brms, brmsmargins, broom, collapse, conflicted, covr, crch,
datawizard, dplyr, emmeans, estimatr, fixest (>= 0.10.1),
future, future.apply, gam, gamlss, gamlss.dist, geepack,
ggbeeswarm, ggdag, ggdist, ggplot2, ggrepel, glmmTMB, glmx,
haven, here, itsadug, ivreg, kableExtra, knitr, lme4, lmerTest,
magrittr, margins, MASS, MatchIt, mclogit, mgcv, mhurdle, mice,
mlogit, modelbased, modelsummary, nlme, nnet, ordinal,
patchwork, pkgdown, plm, polspline, posterior, prediction,
pscl, quantreg, RcppEigen, remotes, rlang, rmarkdown, rms,
robust, robustbase, robustlmm, rstanarm, rstantools,
sampleSelection, sandwich, scam, speedglm, spelling, survey,
survival, systemfonts, tidymodels, tidyr, tidyverse, tinytest,
titanic, truncreg, tsModel, vdiffr, withr
sandwich, knitr, ggplot2, gapminder, stargazer, testthat
knitr, rmarkdown, testthat, ggplot2, gapminder, nnet,
sandwich, stargazer
methods, knitr, rmarkdown, testthat, ggplot2, gapminder,
sandwich, stargazer, lme4
biomod2, dismo, FNN, testthat, knitr, rmarkdown
knitr, testthat, diagram, DiagrammeR, msm, etm, Rsolnp
knitr, testthat, diagram, DiagrammeR, msm, etm, Rsolnp,
knitcitations, rmarkdown
knitr, testthat, diagram, DiagrammeR, msm, etm
knitr, testthat, diagram, DiagrammeR, msm, etm, Rsolnp,
knitcitations, rmarkdown, ctmcd
knitr, testthat, diagram, DiagrammeR, msm, etm, Rsolnp,
knitcitations, rmarkdown, ctmcd, MmgraphR, bookdown, rticles
knitr, testthat, diagram, DiagrammeR, msm, etm, Rsolnp,
knitcitations, rmarkdown, ctmcd, bookdown, rticles
knitr, testthat, diagram, DiagrammeR, msm, Rsolnp,
knitcitations, rmarkdown, ctmcd, bookdown, rticles
knitr, testthat, diagram, DiagrammeR, msm, Rsolnp, rmarkdown,
ctmcd, bookdown, rticles
knitr, devtools, roxygen2, testthat (>= 3.0.0)
MASS, REBayes, corrplot, testthat, kableExtra, knitr,
rmarkdown, profmem
MASS, REBayes, corrplot, testthat, kableExtra, knitr,
rmarkdown, profmem, flashr (>= 0.6.7)
MASS, REBayes, corrplot (>= 0.90), testthat, kableExtra,
knitr, rmarkdown, profmem, flashr (>= 0.6.7)
dismo, testthat, knitr, rmarkdown, wallace
knitr, geepack, rmarkdown, testthat, MASS
knitr, geepack, pls, rmarkdown, testthat, MASS, covr
covr, geepack, knitr, MASS, pls, rmarkdown, roxygen2,
testthat
RJSONIO, qvalue, ecodist, gplots, scatterplot3d
dplyr, knitr, optmatch, RItools, rmarkdown
dplyr, knitr, mvtnorm, optmatch, RItools, rmarkdown
dplyr, knitr, mvtnorm, RItools, rmarkdown
MASS, knitr, rglwidget, rmarkdown, xtable
knitr, rglwidget, rmarkdown, carData, webshot2, markdown
testthat (>= 2.1.0), knitr, rmarkdown, covr
stats (>= 3.5.0), formatR, knitr, LaplacesDemon (>= 16.1.1),
matrixcalc (>= 1.0.3), matrixsampling (>= 1.1.0), MBSP (>=
1.0), rmarkdown, roxygen2, spelling, testthat
formatR, knitr, LaplacesDemon (>= 16.1.1), matrixcalc (>=
1.0-3), matrixsampling (>= 1.1.0), MBSP (>= 1.0), rmarkdown,
roxygen2, sessioninfo, spelling, testthat
R.rsp, microbenchmark, R.devices, base64enc, ggplot2, knitr
base64enc, ggplot2, knitr, microbenchmark, R.devices, R.rsp
base64enc, ggplot2, knitr, markdown, microbenchmark,
R.devices, R.rsp
testthat, moments, car, cosinor, cosinor2
testthat, moments, car, cosinor, cosinor2, PMCMRplus
testthat, moments, car, cosinor, cosinor2, PMCMR
assertive, matrixcalc, plspm, simsem, boot, psych, lavaan,
MASS, RUnit, parallel
plspm, simsem, RUnit, parallel, semPLS, boot
plspm, simsem, RUnit, parallel, semPLS, boot, ASGSCA, RGCCA,
Matrix
plspm, simsem, RUnit, parallel, semPLS, boot, Matrix, ASGSCA
plspm, simsem, RUnit, parallel, semPLS, boot, Matrix, ASGSCA,
knitr, R.rsp
simsem, RUnit, parallel, semPLS, boot, Matrix, ASGSCA, knitr,
R.rsp
covr, knitr, matsindf, rmarkdown, testthat, tidyr
ggplot2, knitr, rmarkdown, testthat, covr
covr, ggplot2, knitr, RCLabels, rmarkdown, spelling, testthat
ggplot2, knitr, rmarkdown, testthat, covr, spelling
testit, testthat (>= 2.1.0), knitr, rmarkdown
beautier, curl, knitr, rmarkdown, testit, testthat (>= 2.1.0)
beautier, knitr, rmarkdown, testit, testthat (>= 2.1.0)
beautier (>= 2.6.2), curl, knitr, markdown, rmarkdown,
testit, testthat (>= 2.1.0)
MASS, clue, dlm, plot3D, tibble, tinytest
testthat (>= 3.0.0), quickcheck (>= 0.1.0), covr
doMC, gamlss.dist, knitr, testthat, R.rsp, rmarkdown
rmarkdown, emojifont, knitr, png, testthat (>= 3.0.0), covr
rmarkdown, emojifont, knitr, markdown, png, testthat (>=
3.0.0), covr
testthat, copula, fitdistrplus, pander, knitcitations,
rmarkdown, knitr, lattice
testthat, copula, pander, knitcitations, rmarkdown, knitr,
lattice
testthat, pander, rmarkdown, knitr, lattice
multicore, party (>= 0.9-9993), ipred, MASS, gbm
multicore, party (>= 0.9-9993), ipred, MASS
multicore, party (>= 0.9-9993), ipred, MASS, fields, BayesX,
gbm
multicore, party (>= 0.9-9993), ipred, MASS, fields, BayesX,
gbm, mlbench, RColorBrewer
multicore, party (>= 1.0-3), ipred, MASS, fields, BayesX,
gbm, mlbench, RColorBrewer
party (>= 1.0-3), ipred, MASS, fields, BayesX, gbm, mlbench,
RColorBrewer, rpart (>= 4.0-3)
party (>= 1.0-3), TH.data, MASS, fields, BayesX, gbm,
mlbench, RColorBrewer, rpart (>= 4.0-3)
party (>= 1.0-3), TH.data, MASS, fields, BayesX, gbm,
mlbench, RColorBrewer, rpart (>= 4.0-3), randomForest, nnet
TH.data, MASS, fields, BayesX, gbm, mlbench, RColorBrewer,
rpart (>= 4.0-3), randomForest, nnet, testthat (>= 0.10.0)
TH.data, MASS, fields, BayesX, gbm, mlbench, RColorBrewer,
rpart (>= 4.0-3), randomForest, nnet, testthat (>= 0.10.0),
kangar00
knitr, rmarkdown, webshot, testthat, covr
base, HSAUR2, roxygen2, knitr, rmarkdown
base, HSAUR3, roxygen2, knitr, rmarkdown
fitdistrplus, survival, testthat (>= 3.0.0)
testthat (>= 0.9.1), knitr, rmarkdown, gridExtra
ape, ggplot2, hunspell, knitr, lintr, nLTT, phangorn,
rappdirs, rmarkdown, spelling, stringr, testthat (>= 2.1.0),
tracerer
ape, ggplot2, hunspell, knitr, lintr, markdown, nLTT,
phangorn, rappdirs, rmarkdown, spelling, stringr, testthat (>=
2.1.0), tracerer
curl, formattable, tidyverse, PracTools, mlr3learners,
mlr3oml, neuralnet, paradox, testthat, knitr, ranger,
rmarkdown, covr
curl, lgr, formattable, tidyverse, PracTools, mlr3learners,
mlr3oml, neuralnet, paradox, testthat, knitr, ranger,
rmarkdown, survival, xgboost, covr
curl, lgr, formattable, tidyverse, PracTools, mlr3learners,
mlr3oml, neuralnet, paradox, knitr, ranger, xgboost, covr,
testthat (>= 3.1.0)
testthat, plyr, lattice, latticeExtra, knitr, rmarkdown,
MASS, mvtnorm, tweedie, devtools
testthat, plyr, lattice, latticeExtra, knitr, rmarkdown,
MASS, mvtnorm, tweedie, spdep, devtools
testthat, knitr, rmarkdown, MASS, mvtnorm, tweedie, devtools
testthat, itertools, microbenchmark, ggplot2, reshape2
MASS, tidyr, purrr, testthat (>= 3.0.0), covr
parallel, doParallel, doRNG (>= 1.6), cli, crayon, knitr (>=
1.12), rmarkdown (>= 0.9)
bnlearn, knitr, rmarkdown, ggdag, testthat
coda, mockery, testthat (>= 3.0.0), knitr, rmarkdown
bayesplot, coda, mockery, testthat (>= 3.0.0), knitr,
rmarkdown
covr, graphics, readr, rlang, testthat, tibble
BayesLogit, lintools, splines, spdep, maptools, bayesplot,
coda, parallel, testthat, roxygen2, knitr, rmarkdown, survey
BayesLogit, lintools, splines, spdep, maptools, bayesplot,
coda, posterior, parallel, testthat, roxygen2, knitr,
rmarkdown, survey
hexbin, testthat (>= 2.1.0), knitr, rmarkdown, covr
hexbin, testthat (>= 2.1.0), purrr (>= 0.3.3), knitr,
rmarkdown, covr
hexbin, testthat (>= 3.1.0), purrr (>= 0.3.4), knitr,
rmarkdown, covr
testthat (>= 2.1.0), covr, knitr, mplot, rmarkdown
knitr, rmarkdown, markdown, testthat, covr
ape, cluster, dendextend, knitr, rmarkdown
knitr, Lahman, etl, macleish, lubridate, sp
knitr, Lahman, etl, macleish, lubridate, sp, testthat
knitr, Lahman, leaflet, etl, macleish, mosaic, mosaicData,
lubridate, sf, testthat, utf8
R.rsp, RUnit, Rmosek, mvtnorm, MethylCapSig, gtools
tcltk, geepack, car, lmtest, boot, hdrcde
boot, car, geepack, hdrcde, lmtest, strucchange, tcltk
boot, car, ConvergenceConcepts, geepack, lmtest, strucchange,
tcltk
boot, car, ConvergenceConcepts, geepack, lmtest, strucchange,
tcltk, plm, zoo
boot, car, ConvergenceConcepts, geepack, lmtest, strucchange,
plm, zoo
knitr, ggplot2, rmarkdown, markdown, parallel
mgcv, quantreg, VGAM, sandwich, SuppDists
mgcv, quantreg, VGAM, sandwich, SuppDists, arm
mgcv, quantreg, VGAM, sandwich, SuppDists, arm, survival
mgcv, quantreg, VGAM, SuppDists, lme4, arm, survival
mgcv, quantreg, VGAM, SuppDists, lme4 (>= 1.0), arm, survival
mgcv, quantreg, VGAM, SuppDists, lme4 (>= 1.0), arm,
survival, parallel
mgcv, quantreg, VGAM, SuppDists, lme4 (>= 1.0), survival,
parallel
mgcv, quantreg, VGAM, SuppDists, survival, parallel
mgcv, quantreg, VGAM, SuppDists, survival, parallel,
testthat, speedglm
knitr, rmarkdown, dplyr, ggplot2, maps, magrittr, testthat
testthat (>= 2.1.0), knitr, rmarkdown, covr, kableExtra,
spelling
testthat (>= 3.0.0), knitr, rmarkdown, utf8
spelling, covr, knitr, rmarkdown, testthat (>= 3.0.0)
covr, knitr, rmarkdown, spelling, testthat (>= 3.0.0)
covr, ggplot2, knitr, microbenchmark, rmarkdown, spelling,
testthat (>= 3.0.0), withr
covr, ggplot2, knitr, microbenchmark, R.rsp, rmarkdown,
spelling, testthat (>= 3.0.0), withr
clipr, covr, crayon, curl, readr, testthat (>= 3.0.0), withr
openxlsx, readxl, foreign, haven, readODS, RODBC, magick,
animation
cowplot, ggimage (>= 0.0.7), knitr, prettydoc, shadowtext
cowplot, ggimage, knitr, prettydoc, shadowtext
cowplot, ggimage, knitr, rmarkdown, prettydoc, shadowtext
testthat, knitr, rmarkdown, covr, magick
testthat, knitr, rmarkdown, covr, magick, lintr
testthat, knitr, rmarkdown, covr, magick, gifski, lintr
testthat, knitr, rmarkdown, covr, magick, gifski
testthat, knitr, rmarkdown, xts, zoo, data.table, utils,
graphics
distill, downlit, knitr, pkgdown, rmdformats, testthat
digest, aws.s3, covr, googleAuthR, googleCloudStorageR, httr,
testthat
devtools, formatR, kableExtra, magrittr, knitr, rmarkdown,
rpart, rpart.plot, randomForest, virtualPollen
testthat, knitr, rmarkdown, dplyr, foreach, parallel
testthat, knitr, rmarkdown, foreach, parallel, rstanarm
testthat, knitr, rmarkdown, parallel, rstanarm, Amelia, nlme
testthat, knitr, rmarkdown, parallel, nlme, future.apply,
rstanarm, Amelia, DT
testthat (>= 3.0.0), covr, rmarkdown, knitr
maps, maptools, covr, irlba, knitr, ncdf4, pkgdown, reshape2,
rmarkdown, testthat (>= 2.1.0), viridis, udunits2, gridExtra,
vdiffr, proj4, kriging, raster, rgdal, here
maps, maptools, covr, irlba, knitr, ncdf4, pkgdown, reshape2,
rmarkdown, testthat (>= 2.1.0), viridis, udunits2, PCICt,
gridExtra, vdiffr, proj4, kriging, raster, rgdal, here
maps, maptools, covr, irlba, knitr, ncdf4, pkgdown, reshape2,
rmarkdown, testthat (>= 2.1.0), viridis, PCICt, gridExtra,
vdiffr, proj4, kriging, raster, rgdal, here, gsignal
covr, irlba, knitr, ncdf4, pkgdown, reshape2, rmarkdown,
testthat, udunits2, vdiffr, viridis
covr, irlba, knitr, ncdf4, pkgdown, reshape2, rmarkdown,
testthat, viridis, udunits2
maps, maptools, covr, irlba, knitr, ncdf4, pkgdown, reshape2,
rmarkdown, testthat (>= 2.1.0), viridis, udunits2, gridExtra,
vdiffr
maps, maptools, covr, irlba, knitr, ncdf4, pkgdown, reshape2,
rmarkdown, testthat (>= 2.1.0), viridis, udunits2, gridExtra,
vdiffr, proj4, kriging, raster, rgdal
metafor (>= 1.9-9), lme4, numDeriv, BiasedUrn
GEOquery, org.Hs.eg.db, VennDiagram, annaffy, hgu133plus2.db,
hgu133a.db, hgu95av2.db
testthat, covr, knitr, rmarkdown, prettydoc
clpAPI (>= 1.2.6), glpkAPI (>= 1.2.11), KernSmooth, KEGGREST,
survival, ctc, knitr, rmarkdown
glpkAPI (>= 1.3.0), clpAPI (>= 1.2.7), KernSmooth, KEGGREST,
survival, ctc, knitr, rmarkdown
glpkAPI (>= 1.3.0), clpAPI (>= 1.2.7), topGO (>= 2.24.0),
unix, KernSmooth, KEGGREST, survival, ctc, knitr, rmarkdown
glpkAPI (>= 1.3.0), topGO (>= 2.24.0), unix, KEGGREST,
survival, knitr, rmarkdown
knitr, here, Rd2roxygen, kableExtra, fansi, downloadthis (>=
0.2.0), spelling
covr, testthat, tibble, knitr, rmarkdown, tidyr
ggthemes, knitr, rmarkdown, testthat (>= 3.0.0), lme4, nlme,
broom, reshape2, impute, M3C, FNN, RColorBrewer, readxl,
survival, future, pbapply, future.apply, progressr, ggrepel,
here, genuMet, ggstatsplot, cowplot, pROC, BiocStyle, MASS,
xgboost
knitr, rmarkdown, testthat, BiocInstaller, zlibbioc
knitr, rmarkdown, testthat, zlibbioc, BiocManager
knitr, rmarkdown, testthat, zlibbioc, BiocManager, phyloseq
knitr, rmarkdown, testthat, zlibbioc, BiocManager, phyloseq,
phylotate, traits, biomformat
covr, knitr, metafor, patchwork, readr, rio, rmarkdown,
roxygen2, spelling, testthat (>= 3.0.0), vdiffr
metafor, numDeriv, BiasedUrn, dfoptim, igraph, ape, testthat,
digest, lme4
metafor, numDeriv, BiasedUrn, dfoptim, igraph, ape, testthat,
digest, lme4, clubSandwich, meta, netmeta, mvtnorm, gridExtra,
rms
knitr, devtools, TeachingDemos, RColorBrewer, reshape2
lme4, numDeriv, polycor, BiasedUrn, survival, Epi, minqa
Matrix, lme4, numDeriv, polycor, BiasedUrn, survival, Epi,
minqa
lme4, numDeriv, polycor, BiasedUrn, survival, Epi, minqa,
multcomp, plyr, igraph, testthat
lme4, numDeriv, polycor, BiasedUrn, survival, Epi, minqa,
multcomp, plyr, igraph, testthat, CompQuadForm, R.rsp, nloptr
R.rsp, testthat, Formula, lme4, numDeriv, polycor, BiasedUrn,
survival, Epi, minqa, multcomp, plyr, igraph, CompQuadForm,
nloptr
lme4, numDeriv, minqa, nloptr, dfoptim, ucminf, CompQuadForm,
mvtnorm, Formula, R.rsp, testthat, BiasedUrn, survival, Epi,
igraph, multcomp, plyr
lme4, numDeriv, minqa, nloptr, dfoptim, ucminf, CompQuadForm,
mvtnorm, Formula, R.rsp, testthat, BiasedUrn, survival, Epi,
multcomp, gsl, boot
lme4, numDeriv, minqa, nloptr, dfoptim, ucminf, CompQuadForm,
mvtnorm, Formula, R.rsp, testthat, BiasedUrn, survival, Epi,
multcomp, gsl, boot, MASS
lme4, numDeriv, minqa, nloptr, dfoptim, ucminf, CompQuadForm,
mvtnorm, Formula, BiasedUrn, Epi, multcomp, gsl, sp, survival,
boot, MASS, crayon, R.rsp, testthat, rmarkdown
lme4, numDeriv, minqa, nloptr, dfoptim, ucminf,
optimParallel, CompQuadForm, mvtnorm, BiasedUrn, Epi, survival,
GLMMadaptive, multcomp, gsl, sp, boot, crayon, R.rsp, testthat,
rmarkdown
lme4, numDeriv, minqa, nloptr, dfoptim, ucminf,
optimParallel, CompQuadForm, mvtnorm, BiasedUrn, Epi, survival,
GLMMadaptive, multcomp, gsl, sp, ape, boot, crayon, R.rsp,
testthat, rmarkdown
lme4, numDeriv, pracma, minqa, nloptr, dfoptim, ucminf,
lbfgsb3c, subplex, BB, optimParallel, CompQuadForm, mvtnorm,
BiasedUrn, Epi, survival, GLMMadaptive, glmmTMB, multcomp, gsl,
sp, ape, boot, clubSandwich, crayon, R.rsp, testthat,
rmarkdown, wildmeta
lme4, numDeriv, pracma, minqa, nloptr, dfoptim, ucminf,
lbfgsb3c, subplex, BB, Rsolnp, alabama, optimParallel,
CompQuadForm, mvtnorm, BiasedUrn, Epi, survival, GLMMadaptive,
glmmTMB, multcomp, gsl, sp, ape, boot, clubSandwich, crayon,
R.rsp, testthat, rmarkdown, wildmeta
future, mgcv, gamm4, gratia, roxygen2, rmarkdown, devtools,
covr, testthat (>= 2.1.0)
future, multtest, mgcv, gamm4, gratia, roxygen2, rmarkdown,
devtools, covr, viridis, testthat (>= 2.1.0)
roxygen2, rmarkdown, devtools, covr, testthat (>= 2.1.0)
roxygen2, knitr, rmarkdown, devtools, covr, testthat (>=
2.1.0)
EBImage, ape, hexView, RCurl, testthat, R.rsp
shiny, miniUI, testthat (>= 2.1.0), data.table, covr
shiny, miniUI, testthat (>= 2.1.0), data.table, covr, sf
testthat, RCurl, httr, repmis, jsonlite, knitr, rmarkdown,
grDevices, gplots, magrittr, tools, foreign, mgcv, reshape2,
caret, randomForest, tsibble, RColorBrewer
runjags, rjags, logistf (>= 1.23), testthat (>= 1.0.2)
runjags, rjags, ggmcmc, logistf (>= 1.23), testthat (>=
1.0.2)
coda, runjags, rjags, ggmcmc, logistf (>= 1.23), testthat (>=
1.0.2)
DT, knitr, rmarkdown, roxygen2, rstudioapi
DT, knitr, mathjaxr, readxl, rmarkdown, roxygen2
metafor (>= 1.9.9), lme4, numDeriv, BiasedUrn, knitr,
rmarkdown
tibble, testthat (>= 3.0.0), haven, magrittr, covr,
safetyData
testthat (>= 3.0.0), haven, covr, safetyData, admiral.test
rmarkdown, knitr, testthat (>= 3.0.0), spelling, DT, epiR,
esc, pwr, metafor
rmarkdown, knitr, testthat (>= 3.0.0), spelling, DT, epiR,
esc, metafor
metafor (>= 1.9-9), Cairo (>= 1.5-9), knitr, rmarkdown
covr, knitr, rmarkdown, roxygen2, testthat
knitr, forecast, spacetime, stars, rmarkdown
ggforce, ggplot2, keyring, knitr, rmarkdown, testthat (>=
3.0.0)
ggforce, ggplot2, keyring, knitr, rmarkdown, testthat (>=
3.0.0), withr
rmarkdown, knitr, ggplot2, tidyr, testthat (>= 3.0.0)
covr, tidyverse, knitr, rmarkdown, apsimx, testthat (>=
3.0.0)
tidyverse, purrr, knitr, rmarkdown, apsimx, testthat (>=
3.0.0)
testthat, RColorBrewer, ggplot2, jsonlite (>= 0.9.16), knitr
(>= 1.8), shiny (>= 0.12.0), binom, dplyr
testthat, RColorBrewer, ggplot2, ggplot2movies, jsonlite (>=
0.9.16), knitr (>= 1.8), shiny (>= 0.12.0), binom, dplyr,
grDevices
prodlim, lava.tobit (>= 0.4-7), testthat, ucminf
lava.tobit (>= 0.4-7), prodlim, testthat, ucminf
lava.tobit (>= 0.4-7), prodlim, testthat (>= 0.11), ucminf
lava.tobit (>= 0.4-7), prodlim, testthat (>= 0.11), ucminf,
R.rsp (>= 0.40)
prodlim, testthat (>= 0.11), ucminf, R.rsp (>= 0.40)
prodlim, cmprsk, testthat (>= 0.11), ucminf, knitr, bookdown,
rmarkdown, ggplot2, cowplot
prodlim, testthat (>= 0.11), ucminf, knitr, bookdown,
rmarkdown, ggplot2, cowplot
optimx, prodlim, cmprsk, testthat (>= 0.11), ucminf, knitr,
rmarkdown, ggplot2, cowplot, icenReg
cobs, knitr, mvPot (>= 0.1.4), mvtnorm, gmm, revdbayes, ismev
boot, cobs, knitr, MASS, mvPot (>= 0.1.4), mvtnorm, gmm,
revdbayes, ismev, tinytest, TruncatedNormal (>= 1.1)
testthat, dplyr, ggplot2, covr, rmarkdown
testthat, covr, knitr, ggridges, alfred, tidyverse,
factorstochvol
testthat, covr, knitr, ggridges, alfred, factorstochvol,
purrr
testthat, covr, knitr, ggridges, alfred, factorstochvol
dplyr (>= 0.8.3), dbplyr (>= 2.0.0), knitr, rmarkdown,
unittest (>= 1.4)
testthat, ggplot2, reshape2, knitr, rmarkdown
testthat (>= 2.1.0), ggplot2, reshape2, knitr, rmarkdown
knitr, rmarkdown, testthat, MASS, webshot2
rgl, knitr, rmarkdown, testthat, MASS, webshot2
nlme (>= 3.1-64), splines, Matrix, parallel
knitr, mvtnorm, rmarkdown, testthat (>= 3.0.0)
covr, testthat, knitr, rmarkdown, qdap, microbenchmark
knitr, rmarkdown, lmtest, xtable, bookdown, texreg, testthat
betareg, lattice, knitr, MASS, nnet, parallel, sn, survival,
truncnorm, foreign
Biobase, knitr, R.rsp, markdown, rmarkdown
Biobase, knitr, R.rsp, markdown, prettydoc, rmarkdown
Biobase, knitr, R.rsp, markdown, prettydoc, rmarkdown,
ProteoMM
kableExtra, knitr, reshape2, rmarkdown, testthat
spelling, knitr, mice (>= 3.3.0), pander (>= 0.6.3),
rmarkdown, testthat, wqs (>= 0.0.1)
car, systemfit, sem, lmtest, sandwich, Ecdat
nnet, ranger, Rgraphviz, testthat (>= 3.0.0)
VIM, lattice, mitools, Zelig, nlme, lme4
VIM, lattice, mitools, nlme, Zelig, lme4
VIM, mitools, nlme, Zelig, lme4, survival, gamlss
AGD, mitools, nlme, Zelig, lme4, survival, gamlss, pan, VIM
AGD, gamlss, lme4, mitools, nlme, pan, survival, Zelig
AGD, CALIBERrfimpute, gamlss, lme4, mitools, nlme, pan,
randomForest, Zelig
AGD, CALIBERrfimpute, gamlss, lme4, mitools, nlme, pan,
randomForest, Zelig, BSDA, knitr, rmarkdown
AGD, CALIBERrfimpute, gamlss, lme4, mitools, nlme, pan,
randomForest, Zelig, BSDA, knitr, rmarkdown, testthat
AGD, CALIBERrfimpute, DPpackage, gamlss, lme4, mitools, nlme,
pan, randomForest, Zelig, BSDA, knitr, rmarkdown, testthat,
HSAUR3, micemd, miceadds, tidyr
broom.mixed, knitr, lme4, MASS, mitml, miceadds, nnet, pan,
randomForest, rmarkdown, rpart, survival, testthat, lmtest
broom.mixed, haven, knitr, lme4, MASS, metafor, mitml,
miceadds, nnet, pan, randomForest, rmarkdown, rpart, survival,
testthat, lmtest
broom.mixed, decor, glmnet, haven, knitr, lme4, lmtest, MASS,
metafor, mitml, miceadds, nnet, pan, randomForest, ranger,
rmarkdown, rpart, survival, testthat
broom.mixed, decor, future, furrr, glmnet, haven, knitr,
lme4, lmtest, MASS, metafor, mitml, miceadds, nnet, pan,
parallelly, purrr, randomForest, ranger, rmarkdown, rpart,
rstan, survival, testthat
AGD, CALIBERrfimpute, gamlss, lme4, mitools, nlme, pan,
randomForest, Zelig, BSDA, knitr, rmarkdown, testthat, HSAUR3,
micemd, miceadds, tidyr
AGD, gamlss, lme4, mitools, nlme, pan, randomForest, Zelig,
BSDA, knitr, rmarkdown, testthat, HSAUR3, micemd, miceadds,
tidyr
knitr, lme4, MASS, mitml, miceadds, nnet, pan, randomForest,
rmarkdown, rpart, survival, testthat
knitr, lme4, MASS, mitml, miceadds, nnet, pan, randomForest,
rmarkdown, rpart, survival, testthat, lmtest
knitr, rmarkdown, pacman, testthat, mice, dplyr, broom
knitr, rmarkdown, pacman, testthat, mice, dplyr, broom, car
data.table, knitr, rmarkdown, pacman, testthat, mice, dplyr,
broom, car, magrittr
dplyr, knitr, rmarkdown, pacman, testthat, mice, broom, car,
magrittr, ggplot2
knitr, rmarkdown, pacman, testthat, mice, broom, car, ggplot2
knitr, rmarkdown, pacman, testthat, mice, broom, car
knitr, rmarkdown, pacman, testthat, mice, magrittr, ggplot2,
UpSetR, dplyr
knitr, rmarkdown, doParallel, testthat (>= 2.1.0)
Amelia, Zelig, jomo, haven, BIFIEsurvey, mitml, pan
Amelia, BIFIEsurvey, haven, jomo, mitml, pan, Zelig
Amelia, BIFIEsurvey, haven, Hmisc, inline, jomo, MBESS,
mitml, pan, pls, Zelig
Amelia, BIFIEsurvey, blme, car, foreign, grouped, haven,
inline, jomo, MBESS, MCMCglmm, mitml, multiwayvcov, pan,
sjlabelled
Amelia, BIFIEsurvey, blme, car, foreign, grouped, haven,
inline, jomo, MBESS, MCMCglmm, mitml, multiwayvcov, numDeriv,
pan, sjlabelled
Amelia, BIFIEsurvey, blme, car, foreign, grouped, haven, hmi,
Hmisc, inline, jomo, MBESS, MCMCglmm, micemd, mitml,
multiwayvcov, pan, pls, sjlabelled, Zelig
Amelia, BIFIEsurvey, blme, car, foreign, grouped, haven,
inline, jomo, MBESS, MCMCglmm, mitml, multiwayvcov, numDeriv,
pan, readxl, sjlabelled
BIFIEsurvey, blme, car, CDM, coda, foreign, grouped, imputeR,
inline, lme4, MASS, MBESS, MCMCglmm, mdmb, numDeriv, readxl,
sandwich, simputation, sirt, sjlabelled, synthpop, TAM
BIFIEsurvey, blme, car, CDM, coda, foreign, inline, lme4,
MASS, MBESS, MCMCglmm, mdmb, numDeriv, readxl, sandwich, sirt,
sjlabelled, synthpop, TAM
BIFIEsurvey, blme, car, CDM, coda, foreign, inline, lme4,
MASS, MBESS, MCMCglmm, mdmb, pls, numDeriv, readxl, sandwich,
sirt, sjlabelled, synthpop, TAM
BIFIEsurvey, blme, car, coda, foreign, grouped, inline, MASS,
MBESS, MCMCglmm, mdmb, multiwayvcov, numDeriv, readxl,
sjlabelled
BIFIEsurvey, blme, car, CDM, coda, foreign, grouped, inline,
lme4, MASS, MBESS, MCMCglmm, mdmb, numDeriv, readxl, sandwich,
sirt, sjlabelled, TAM
BIFIEsurvey, blme, car, CDM, coda, foreign, grouped, imputeR,
inline, lme4, MASS, MBESS, MCMCglmm, mdmb, numDeriv, readxl,
sandwich, simputation, sirt, sjlabelled, TAM
foreign (>= 0.8-80), knitr, rmarkdown, testthat (>= 3.0.0),
bookdown, readr
biotools, MVN, testthat (>= 0.8), knitr, deseasonalize
biotools, MVN, deseasonalize, testthat (>= 0.8), knitr,
roxygen2, devtools
biotools, MVN (>= 5.0), deseasonalize, testthat (>= 0.8),
knitr, roxygen2, devtools
biotools, MVN (>= 5.0), testthat (>= 0.8), knitr, roxygen2,
devtools
GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel,
agricolae, gridExtra, picante, pheatmap, igraph, rgexf, mice
GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel,
agricolae, gridExtra, picante, pheatmap, igraph, rgexf, mice,
GGally
GUniFrac, ggpubr, randomForest, ggdendro, ggrepel, agricolae,
gridExtra, picante, pheatmap, igraph, tidytree, mice, phyloseq
reshape2, GUniFrac, MASS, ggpubr, randomForest, ggdendro,
ggrepel, agricolae, gridExtra, picante, pheatmap, igraph,
rgexf, tidytree, mice, ggtree, phyloseq
reshape2, GUniFrac, MASS, ggpubr, randomForest, ggdendro,
ggrepel, agricolae, gridExtra, picante, pheatmap, igraph,
rgexf, tidytree, mice, ggtree
GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel,
agricolae, gridExtra, picante, pheatmap, igraph, rgexf,
tidytree, mice, ggtree
HH, lattice, ggplot2, reshape2, grid, latticeExtra, xtable,
markdown, rmarkdown, knitr, htmlTable
reshape2, latticeExtra, xtable, markdown, rmarkdown, knitr,
htmlTable
bookdown, data.table, plotly, shinyjs, shinyBS, rmarkdown,
rhandsontable, shinycssloaders, testthat
testthat (>= 2.3.0), usethis (>= 1.3.0), httptest (>= 3.3.0),
plumber (>= 1.0.0), jsonlite, httr
testthat (>= 2.3.0), usethis (>= 1.3.0), httptest (>= 3.3.0),
plumber (>= 1.0.0), pkgload, jsonlite, promises, future, httr
future, httptest (>= 3.3.0), httr, jsonlite, pkgload, plumber
(>= 1.0.0), promises, testthat (>= 2.3.0), usethis (>= 1.3.0)
tkrplot, testthat, knitr, rmarkdown, covr
tinytest, mlr3tuning, mlr3, mlr3learners, ranger, xgboost,
rpart
psych, testthat, knitr, rmarkdown, ggplot2, tidyr, covr
concaveman, covr, ggdendro, knitr, oaqc, readxl, rmarkdown,
roxygen2, testthat
concaveman, covr, ggdendro, knitr, oaqc, readxl, Rgraphviz,
rmarkdown, roxygen2, testthat
concaveman, covr, ggdendro, knitr, minMSE, oaqc, readxl,
Rgraphviz, rmarkdown, roxygen2, rsconnect, testthat
testthat, roxygen2, covr, knitr, rmarkdown
covr, knitr, patchwork, rmarkdown, roxygen2, testthat
knitr, testthat, rmarkdown, roxygen2, covr
covr, knitr, readxl, rmarkdown, roxygen2, testthat
magrittr, tools, knitr, rmarkdown, testthat
igraph, grDevices, ggplot2 (>= 3.3.0), gridExtra
doFuture, foreach, future, future.apply, ggplot2, knitr,
purrr, rmarkdown, rpart, testthat, tidyr
doFuture, foreach, future, future.apply, ggplot2, knitr,
purrr, rmarkdown, testthat, tidyr
doFuture, foreach, future, future.apply, ggplot2, knitr,
progress, progressr, purrr, rmarkdown, testthat, tidyr
testthat, knitr, knitcitations, rmarkdown, data.table,
ggplot2, plyr
testthat, knitr, Hmisc, rmarkdown, data.table, ggplot2, plyr
knitr, testthat, pkgdown, seqinr, Biostrings, rmarkdown,
withr
knitr, rmarkdown, vcr, covr, testthat, ggplot2, readxl
devtools, knitr, rmarkdown, testthat(>= 0.9), covr, withr
devtools, knitr, rmarkdown, testthat(>= 0.9), covr, withr,
mockery, testthis
devtools, knitr, rmarkdown, testthat (>= 2.1.0), covr, withr,
mockery, testthis, roxygen2
devtools, knitr, rmarkdown, testthat (>= 2.1.0), covr, withr,
mockery, testthis, roxygen2, mockr, spelling
testthat(>= 0.9), knitr, rmarkdown, igraph
callr, dplyr, purrr, testthat (>= 2.1.0), tidyr, tibble
callr, dplyr, purrr, shiny, testthat (>= 2.1.0), tidyr,
tibble
testthat, knitr, rmarkdown, sybil, sybilSBML, glpkAPI
testthat, knitr, rmarkdown, sybil, sybilSBML
testthat, knitr, rmarkdown, sybil, glpkAPI
testthat, plink, boot, latticeExtra, parallel
testthat, plink, boot, latticeExtra, shiny, parallel
boot, latticeExtra, directlabels, shiny, knitr, Rsolnp,
alabama, sirt, mirtCAT
boot, latticeExtra, directlabels, shiny, knitr, Rsolnp,
nloptr, sirt, mirtCAT
boot, latticeExtra, directlabels, shiny, knitr, markdown,
Rsolnp, nloptr, sirt, plink, mirtCAT
testthat, plink, boot, latticeExtra, shiny, knitr, parallel
testthat, boot, latticeExtra, shiny, knitr, parallel, Rsolnp,
alabama, sirt, mirtCAT
testthat, boot, latticeExtra, directlabels, shiny, knitr,
parallel, Rsolnp, alabama, sirt, mirtCAT
ggplot2, knitr, lpSolve, rmarkdown, testthat (>= 2.1.0),
tibble
ggplot2, knitr, lpSolve, mvtnorm, norm, rmarkdown, testthat
(>= 2.1.0), tibble
ggplot2, knitr, lpSolve, norm, rmarkdown, testthat (>=
2.1.0), tibble
mice, dplyr, survival, ggplot2, knitr, rmarkdown
dplyr, survival, mice, rmarkdown, knitr, testthat
survival, dplyr, mice, rmarkdown, knitr, testthat
aricode, blockmodels, testthat, covr, knitr, rmarkdown,
ggplot2
aricode, blockmodels, testthat, covr, knitr, rmarkdown,
aricode, blockmodels, testthat (>= 2.1.0), covr, knitr,
rmarkdown, spelling
aricode, blockmodels, corrplot, future, testthat (>= 2.1.0),
covr, knitr, rmarkdown, spelling
e1071, mvtnorm, AcceptanceSampling, boot, car, Dodge,
tseries, qcc, DoE.base, FrF2, rsm, LearnBayes, ggplot2, grid,
DiceEval, DiceKriging, DiceDesign, DiceView, lhs, survival
e1071, mvtnorm, AcceptanceSampling, boot, car, Dodge,
tseries, qcc, DoE.base, FrF2, rsm, LearnBayes, ggplot2, grid,
DiceEval, DiceKriging, DiceDesign, lhs, survival
e1071, mvtnorm, AcceptanceSampling, boot, car, Dodge,
tseries, qcc, DoE.base, FrF2, rsm, LearnBayes, ggplot2, grid,
DiceEval, DiceKriging, DiceDesign, DiceView, lhs, survival,
rpart, fdapace, randomForest, xgboost
microbenchmark, deSolve, scatterplot3d, KrigInv, rgenoud,
kernlab, knitr, rmarkdown, markdown
mice, miceadds, Amelia, lme4, nlme, geepack, knitr, rmarkdown
mice, miceadds, Amelia, lme4, nlme, geepack, survival, knitr,
rmarkdown
mice, miceadds, Amelia, lme4, nlme, lavaan, geepack,
survival, knitr, rmarkdown
visNetwork, knitr, rmarkdown, utils, shiny, curl
visNetwork, knitr, rmarkdown, utils, shiny, curl, testthat
(>= 3.0.0)
rmarkdown, knitr, testthat (>= 3.0.0), mockery
knitr, rmarkdown, devtools, testthat, covr
testthat, tibble, purrr, dplyr, rmutil, pheatmap, mcclust,
ggplot2, tidyr, utils
knitr, mlogit, rmarkdown, testthat, texreg, xtable
testthat, knitr, rmarkdown, mlogit, xtable, texreg
metafor, meta, rmeta, dosresmeta, nlme, MASS, dlnm
ContourFunctions, dplyr, ggplot2, gridExtra, lhs, testthat
(>= 3.0.0)
rmarkdown, knitr, devtools, bbreg, testthat, covr, tidyr,
ggfortify, broom
Rmosek, REBayes, testthat, knitr, rmarkdown
REBayes, Rmosek, testthat, knitr, rmarkdown
R2WinBUGS, R2jags, coefplot2, ggplot2, reshape2
testthat, roxygen2, knitr, shiny, shinyBS
testthat (>= 2.1.0), vdiffr, roxygen2, knitr, shinyBS,
rmarkdown, pkgdown, covr, spelling
knitr, testthat, microbenchmark, ggplot2, tikzDevice
knitr, rbenchmark, tikzDevice, testthat, rmarkdown, covr,
vdiffr
knitr, rbenchmark, tikzDevice, testthat, rmarkdown, covr,
vdiffr, benchmarkme, tibble, stats4
knitr, rbenchmark, tikzDevice, testthat, rmarkdown, covr,
vdiffr, benchmarkme, tibble
knitr, rbenchmark, tikzDevice, testthat, rmarkdown, covr,
vdiffr, benchmarkme, tibble, stats4, readxl
testthat, mockery, Rglpk, ROI, ROI.plugin.glpk
bigmemory, GeneSelector, gplots, nnet, cairoDevice, fBasics
testthat, knitr, rmarkdown, pitchRx, viridis, ggplot2,
plotly, RSQLite, dbplyr
testthat, knitr, rmarkdown, ggplot2, RSQLite, dbplyr
tidyverse, knitr, rmarkdown, testthat (>= 3.0.0)
covr, testthat, MASS, sampling, XML, waldo
covr, testthat (>= 3.0.0), MASS, sampling, XML, waldo
covr, carrier, keras, lintr, testthat, stringi (< 1.4.4)
covr, carrier, keras, lintr, testthat (>= 2.0.0), stringi (<
1.4.4), xgboost, h2o
carrier, covr, h2o, keras, lintr, mleap, sparklyr, stringi (<
1.4.4), testthat (>= 2.0.0), xgboost
carrier, covr, h2o, keras, lintr, sparklyr, stringi (<
1.4.4), testthat (>= 2.0.0), xgboost
carrier, covr, h2o, keras, lintr, sparklyr, stringi, testthat
(>= 2.0.0), reticulate, xgboost
clubSandwich, testthat (>= 3.0.0), knitr
ueadata1, ueadata2, ueadata3, ueadata4, ueadata5, ueadata6,
ueadata7, ueadata8, testthat (>= 3.0.0)
knitr, car, nnet, lattice, AER, ggplot2, texreg
knitr, car, nnet, lattice, AER, ggplot2, texreg, rmarkdown
knitr, lme4, lmerTest, mirt, pwr, rmarkdown, simr, sn, tidyr
testthat, snowfall, ada, adabag, cmaes, DiceKriging,
DiceOptim, e1071, earth, FNN, FSelector, gbm, irace, kernlab,
kknn, klaR, mboost, mda, mlbench, nnet, party, penalized, pls,
randomForest, reshape, robustbase, rpart, rsm, RWeka, ROCR
testthat, ada, adabag, class, cluster, cmaes, CoxBoost, crs,
DiceKriging, DiceOptim, DiscriMiner, e1071, earth, FNN,
FSelector, gbm, GenSA, ggplot2, glmnet, Hmisc, irace, kernlab,
kknn, klaR, LiblineaR, mboost, mda, mlbench, mRMRe, nnet,
party, penalized, pls, pROC, randomForest, randomForestSRC,
reshape2, rrlda, robustbase, rpart, rsm, RWeka, ROCR, stepPlr
testthat, ada, adabag, caret, class, cluster, clusterSim,
clValid, cmaes, CoxBoost, crs, DiceKriging, DiceOptim,
DiscriMiner, e1071, earth, emoa, FNN, FSelector, gbm, GenSA,
ggplot2, glmnet, Hmisc, irace, kernlab, kknn, klaR, LiblineaR,
mboost, mco, mda, mlbench, mRMRe, nnet, party, penalized, pls,
pROC, randomForest, randomForestSRC, reshape2, rrlda,
robustbase, rpart, rsm, RWeka, ROCR, stepPlr
ada, adabag, bartMachine, brnn, bst, C50, care, caret (>=
6.0-57), class, clue, cluster, clusterSim (>= 0.44-5), clValid,
cmaes, CoxBoost, crs, Cubist, deepnet, DiceKriging, DiceOptim,
DiscriMiner, e1071, earth, elasticnet, elmNN, emoa, evtree,
extraTrees, flare, fields, FNN, fpc, frbs, FSelector, gbm,
GenSA, ggvis, glmnet, h2o (>= 3.6.0.8), GPfit, Hmisc, ipred,
irace (>= 2.0), kernlab, kknn, klaR, knitr, kohonen, laGP,
LiblineaR, lqa, MASS, mboost, mco, mda, mlbench, mldr,
modeltools, mRMRe, nnet, nodeHarvest (>= 0.7-3), neuralnet,
numDeriv, pamr, party, penalized (>= 0.9-47), pls, PMCMR (>=
4.1), pROC (>= 1.8), randomForest, randomForestSRC (>= 2.2.0),
ranger (>= 0.6.0), RCurl, Rfast, rFerns, rjson, rknn,
rmarkdown, robustbase, ROCR, rotationForest, rpart, RRF, rrlda,
rsm, RSNNS, RWeka, sda, shiny, smoof, sparsediscrim, sparseLDA,
stepPlr, SwarmSVM, svglite, testthat, tgp, TH.data, xgboost (>=
0.6-2), XML
ada, adabag, bartMachine, batchtools, brnn, bst, C50, care,
caret (>= 6.0-57), class, clue, cluster, clusterSim (>=
0.44-5), clValid, cmaes, CoxBoost, crs, Cubist, deepnet,
DiceKriging, DiceOptim, DiscriMiner, e1071, earth, elasticnet,
elmNN, emoa, evtree, extraTrees, flare, fields, FNN, fpc, frbs,
FSelector, gbm, GenSA, ggvis, glmnet, h2o (>= 3.6.0.8), GPfit,
Hmisc, ipred, irace (>= 2.0), kernlab, kknn, klaR, knitr,
kohonen, laGP, LiblineaR, lqa, MASS, mboost, mco, mda, mlbench,
mldr, mlrMBO, modeltools, mRMRe, nnet, nodeHarvest (>= 0.7-3),
neuralnet, numDeriv, pamr, party, penalized (>= 0.9-47), pls,
PMCMR (>= 4.1), pROC (>= 1.8), randomForest, randomForestSRC
(>= 2.2.0), ranger (>= 0.6.0), RCurl, Rfast, rFerns, rjson,
rknn, rmarkdown, robustbase, ROCR, rotationForest, rpart, RRF,
rrlda, rsm, RSNNS, RWeka, sda, shiny, smoof, sparsediscrim,
sparseLDA, stepPlr, SwarmSVM, svglite, testthat, tgp, TH.data,
xgboost (>= 0.6-2), XML
ada, adabag, bartMachine, batchtools, brnn, bst, C50, care,
caret (>= 6.0-57), class, clue, cluster, clusterSim (>=
0.44-5), clValid, cmaes, CoxBoost, crs, Cubist, deepnet,
DiceKriging, DiceOptim, DiscriMiner, e1071, earth, elasticnet,
elmNN, emoa, evtree, extraTrees, fda.usc, FDboost, flare,
fields, FNN, fpc, frbs, FSelector, gbm, GenSA, glmnet, h2o (>=
3.6.0.8), GPfit, Hmisc, ipred, irace (>= 2.0), kernlab, kknn,
klaR, knitr, laGP, LiblineaR, lintr (>= 1.0.0.9001), lqa, MASS,
mboost, mco, mda, mlbench, mldr, mlrMBO, mmpf, modeltools,
mRMRe, nnet, nodeHarvest (>= 0.7-3), neuralnet, numDeriv, pamr,
party, penalized (>= 0.9-47), pls, PMCMR (>= 4.1),
randomForest, randomForestSRC (>= 2.2.0), ranger (>= 0.8.0),
refund, rex, rFerns, rknn, rmarkdown, robustbase, ROCR,
rotationForest, rpart, RRF, rrlda, rsm, RSNNS, RWeka, sda,
shiny, smoof, sparseLDA, stepPlr, survAUC, SwarmSVM, svglite,
testthat, tgp, TH.data, wavelets, xgboost (>= 0.6-2)
ada, adabag, bartMachine, batchtools, brnn, bst, C50, care,
caret (>= 6.0-57), class, clue, cluster, clusterSim (>=
0.44-5), clValid, cmaes, cowplot, CoxBoost, crs, Cubist,
deepnet, DiceKriging, DiscriMiner, e1071, earth, elasticnet,
emoa, evtree, extraTrees, fda.usc, FDboost, flare, FNN, fpc,
frbs, FSelector, gbm, GenSA, glmnet, hrbrthemes, h2o (>=
3.6.0.8), GPfit, Hmisc, irace (>= 2.0), kernlab, kknn, klaR,
knitr, laGP, LiblineaR, lintr (>= 1.0.0.9001), MASS, mboost,
mco, mda, mlbench, mldr, mlrMBO, mmpf, modeltools, mRMRe, nnet,
nodeHarvest (>= 0.7-3), neuralnet, numDeriv, pamr, party,
penalized (>= 0.9-47), pls, PMCMR (>= 4.1), purrr,
randomForest, randomForestSRC (>= 2.7.0), ranger (>= 0.8.0),
refund, rex, rFerns, rknn, rmarkdown, ROCR, rotationForest,
rpart, RRF, rgenoud, rrlda, rsm, RSNNS, RWeka, sda, sf, smoof,
sparseLDA, stepPlr, survAUC, svglite, SwarmSVM, testthat, tgp,
TH.data, wavelets, xgboost (>= 0.6-2)
ada, adabag, bartMachine, batchtools, brnn, bst, C50, care,
caret (>= 6.0-57), class, clue, cluster, clusterSim (>=
0.44-5), clValid, cmaes, cowplot, CoxBoost, crs, Cubist,
deepnet, DiceKriging, DiscriMiner, e1071, earth, elasticnet,
emoa, evtree, extraTrees, fda.usc, FDboost, flare, FNN, fpc,
frbs, FSelector, FSelectorRcpp (>= 0.2.1), gbm, GenSA, ggpubr,
glmnet, GPfit, h2o (>= 3.6.0.8), Hmisc, hrbrthemes, irace (>=
2.0), kernlab, kknn, klaR, knitr, laGP, LiblineaR, lintr (>=
1.0.0.9001), liquidSVM, MASS, mboost, mco, mda, memoise,
mlbench, mldr, mlrMBO, mmpf, modeltools, mRMRe, neuralnet,
nnet, nodeHarvest (>= 0.7-3), numDeriv, pander, pamr, party,
penalized (>= 0.9-47), pls, PMCMR (>= 4.1), praznik (>= 5.0.0),
randomForest, randomForestSRC (>= 2.7.0), ranger (>= 0.8.0),
rappdirs, refund, rex, rFerns, rgenoud, rknn, rmarkdown, ROCR,
rotationForest, rpart, RRF, rrlda, rsm, RSNNS, RWeka, sda, sf,
smoof, sparseLDA, stepPlr, survAUC, svglite, SwarmSVM,
testthat, tgp, TH.data, wavelets, xgboost (>= 0.6-2)
ada, adabag, bartMachine, batchtools, brnn, bst, C50, care,
caret (>= 6.0-57), class, clue, cluster, ClusterR, clusterSim
(>= 0.44-5), clValid, cmaes, cowplot, CoxBoost, crs, Cubist,
deepnet, DiceKriging, DiscriMiner, e1071, earth, elasticnet,
emoa, evtree, extraTrees, fda.usc, FDboost, flare, FNN, fpc,
frbs, FSelector, FSelectorRcpp (>= 0.2.1), gbm, GenSA, ggpubr,
glmnet, GPfit, h2o (>= 3.6.0.8), Hmisc, hrbrthemes, irace (>=
2.0), kernlab, kknn, klaR, knitr, laGP, LiblineaR, lintr (>=
1.0.0.9001), MASS, mboost, mco, mda, memoise, mlbench, mldr,
mlrMBO, mmpf, modeltools, mRMRe, neuralnet, nnet, nodeHarvest
(>= 0.7-3), numDeriv, pamr, pander, party, penalized (>=
0.9-47), pls, PMCMR (>= 4.1), praznik (>= 5.0.0), randomForest,
randomForestSRC (>= 2.7.0), ranger (>= 0.8.0), rappdirs,
refund, rex, rFerns, rgenoud, rknn, rmarkdown, ROCR,
rotationForest, rpart, RRF, rrlda, rsm, RSNNS, RWeka, sda, sf,
smoof, sparseLDA, stepPlr, survAUC, svglite, SwarmSVM,
testthat, tgp, TH.data, wavelets, xgboost (>= 0.6-2)
ada, adabag, bartMachine, batchtools, brnn, bst, C50, care,
caret (>= 6.0-57), class, classiFunc, clue, cluster, ClusterR,
clusterSim (>= 0.44-5), clValid, cmaes, cowplot, CoxBoost, crs,
Cubist, deepnet, DiceKriging, DiscriMiner, e1071, earth,
elasticnet, emoa, evtree, extraTrees, fda.usc, FDboost, flare,
FNN, forecast (>= 8.3), fpc, frbs, FSelector, FSelectorRcpp (>=
0.2.1), gbm, GenSA, ggpubr, glmnet, GPfit, h2o (>= 3.6.0.8),
Hmisc, hrbrthemes, irace (>= 2.0), kernlab, kknn, klaR, knitr,
laGP, LiblineaR, lintr (>= 1.0.0.9001), MASS, mboost, mco, mda,
memoise, mlbench, mldr, mlrMBO, mmpf, modeltools, mRMRe,
neuralnet, nnet, nodeHarvest (>= 0.7-3), numDeriv, pamr,
pander, party, penalized (>= 0.9-47), pls, PMCMR (>= 4.1),
praznik (>= 5.0.0), randomForest, randomForestSRC (>= 2.7.0),
ranger (>= 0.8.0), rappdirs, refund, rex, rFerns, rgenoud,
rknn, rmarkdown, ROCR, rotationForest, rpart, RRF, rrlda, rsm,
RSNNS, rucrdtw, RWeka, sda, sf, smoof, sparseLDA, stepPlr,
survAUC, svglite, SwarmSVM, testthat, tgp, TH.data, tsfeatures,
vdiffr, wavelets, xgboost (>= 0.7)
ada, adabag, bartMachine, batchtools, brnn, bst, C50, care,
caret (>= 6.0-57), class, clue, cluster, ClusterR, clusterSim
(>= 0.44-5), cmaes, cowplot, CoxBoost, crs, Cubist, deepnet,
DiceKriging, DiscriMiner, e1071, earth, elasticnet, emoa,
evtree, extraTrees, fda.usc, FDboost, FNN, forecast (>= 8.3),
fpc, frbs, FSelector, FSelectorRcpp (>= 0.2.1), gbm, GenSA,
ggpubr, glmnet, GPfit, h2o (>= 3.6.0.8), Hmisc, hrbrthemes,
irace (>= 2.0), kernlab, kknn, klaR, knitr, laGP, LiblineaR,
lintr (>= 1.0.0.9001), MASS, mboost, mco, mda, memoise,
mlbench, mldr, mlrMBO, mmpf, modeltools, mRMRe, neuralnet,
nnet, nodeHarvest (>= 0.7-3), numDeriv, pamr, pander, party,
penalized (>= 0.9-47), pls, PMCMR (>= 4.1), praznik (>= 5.0.0),
randomForest, randomForestSRC (>= 2.7.0), ranger (>= 0.8.0),
rappdirs, refund, rex, rFerns, rgenoud, rknn, rmarkdown, ROCR,
rotationForest, rpart, RRF, rrlda, rsm, RSNNS, rucrdtw, RWeka,
sda, sf, smoof, sparseLDA, stepPlr, survAUC, svglite, SwarmSVM,
testthat, tgp, TH.data, tidyr, tsfeatures, vdiffr, wavelets,
xgboost (>= 0.7)
ada, adabag, bartMachine, batchtools, brnn, bst, C50, care,
caret (>= 6.0-57), class, clue, cluster, ClusterR, clusterSim
(>= 0.44-5), cmaes, cowplot, CoxBoost, crs, Cubist, deepnet,
DiceKriging, DiscriMiner, e1071, earth, elasticnet, emoa,
evtree, extraTrees, fda.usc, FDboost, FNN, forecast (>= 8.3),
fpc, frbs, FSelector, FSelectorRcpp (>= 0.2.1), gbm, GenSA,
ggpubr, glmnet, GPfit, h2o (>= 3.6.0.8), Hmisc, irace (>= 2.0),
kernlab, kknn, klaR, knitr, laGP, LiblineaR, lintr (>=
1.0.0.9001), MASS, mboost, mco, mda, memoise, mlbench, mldr,
mlrMBO, mmpf, modeltools, mRMRe, neuralnet, nnet, nodeHarvest
(>= 0.7-3), numDeriv, pamr, pander, party, penalized (>=
0.9-47), pls, PMCMR (>= 4.1), praznik (>= 5.0.0), randomForest,
randomForestSRC (>= 2.7.0), ranger (>= 0.8.0), rappdirs,
refund, rex, rFerns, rgenoud, rknn, rmarkdown, ROCR,
rotationForest, rpart, RRF, rrlda, rsm, RSNNS, rucrdtw, RWeka,
sda, sf, smoof, sparseLDA, stepPlr, survAUC, svglite, SwarmSVM,
testthat, tgp, TH.data, tidyr, tsfeatures, vdiffr, wavelets,
xgboost (>= 0.7)
ada, adabag, bartMachine, batchtools, bit64, brnn, bst, C50,
care, caret (>= 6.0-57), class, clue, cluster, ClusterR,
clusterSim (>= 0.44-5), cmaes, cowplot, crs, Cubist, deepnet,
DiceKriging, DiscriMiner, e1071, earth, elasticnet, emoa,
evtree, extraTrees, fda.usc, FDboost, FNN, forecast (>= 8.3),
fpc, frbs, FSelector, FSelectorRcpp (>= 0.3.5), gbm, GenSA,
ggpubr, glmnet, GPfit, h2o (>= 3.6.0.8), Hmisc, irace (>= 2.0),
kernlab, kknn, klaR, knitr, laGP, LiblineaR, lintr (>=
1.0.0.9001), MASS, mboost, mco, mda, memoise, mlbench, mldr,
mlrMBO, mmpf, modeltools, mRMRe, neuralnet, nnet, nodeHarvest
(>= 0.7-3), numDeriv, pamr, pander, party, pec, penalized (>=
0.9-47), pls, PMCMRplus, praznik (>= 5.0.0), randomForest,
randomForestSRC (>= 2.7.0), ranger (>= 0.8.0), rappdirs,
refund, rex, rFerns, rgenoud, rknn, rmarkdown, Rmpi, ROCR,
rotationForest, rpart, RRF, rrlda, rsm, RSNNS, rucrdtw, RWeka,
sda, sf, smoof, snow, sparseLDA, stepPlr, survAUC, svglite,
SwarmSVM, testthat, tgp, TH.data, tidyr, tsfeatures, vdiffr,
wavelets, xgboost (>= 0.7)
ada, adabag, bartMachine, batchtools, bit64, brnn, bst, C50,
care, caret (>= 6.0-57), class, clue, cluster, ClusterR,
clusterSim (>= 0.44-5), cmaes, cowplot, crs, Cubist, deepnet,
DiceKriging, e1071, earth, elasticnet, emoa, evtree, fda.usc,
FDboost, FNN, forecast (>= 8.3), fpc, frbs, FSelector,
FSelectorRcpp (>= 0.3.5), gbm, GenSA, ggpubr, glmnet, GPfit,
h2o (>= 3.6.0.8), Hmisc, irace (>= 2.0), kernlab, kknn, klaR,
knitr, laGP, LiblineaR, lintr (>= 1.0.0.9001), MASS, mboost,
mco, mda, memoise, mlbench, mldr, mlrMBO, mmpf, modeltools,
mRMRe, neuralnet, nnet, numDeriv, pamr, pander, party, pec,
penalized (>= 0.9-47), pls, PMCMRplus, praznik (>= 5.0.0),
randomForest, ranger (>= 0.8.0), rappdirs, refund, rex, rFerns,
rgenoud, rmarkdown, Rmpi, ROCR, rotationForest, rpart, RRF,
rsm, RSNNS, rucrdtw, RWeka, sda, sf, smoof, sparseLDA, stepPlr,
survAUC, svglite, SwarmSVM, testthat, tgp, TH.data, tidyr,
tsfeatures, vdiffr, wavelets, xgboost (>= 0.7)
testthat, ada, adabag, bartMachine, care, caret, class, clue,
cluster, clusterSim, clValid, cmaes, CoxBoost, crs,
DiceKriging, DiceOptim, DiscriMiner, e1071, earth, emoa, FNN,
FSelector, gbm, GenSA, glmnet, Hmisc, irace, kernlab, kknn,
klaR, lqa, LiblineaR, MASS, mboost, mco, mda, mlbench,
modeltools, mRMRe, nnet, party, penalized, pls, pROC,
randomForest, randomForestSRC, reshape2, rrlda, robustbase,
rpart, rsm, RWeka, ROCR, sda, stepPlr, TH.data
ada, adabag, bartMachine, brnn, care, caret, class, clue,
cluster, clusterSim, clValid, cmaes, CoxBoost, crs, Cubist,
DiceKriging, DiceOptim, DiscriMiner, e1071, earth, elmNN, emoa,
extraTrees, FNN, FSelector, gbm, GenSA, glmnet, Hmisc, irace,
kernlab, kknn, klaR, kohonen, laGP, LiblineaR, lqa, MASS,
mboost, mco, mda, mlbench, modeltools, mRMRe, nnet,
nodeHarvest, party, penalized, pls, pROC, randomForest,
randomForestSRC, randomUniformForest, RCurl, rjson, robustbase,
ROCR, rpart, rrlda, rsm, RWeka, sda, stepPlr, testthat, tgp,
TH.data, xgboost
ada, adabag, bartMachine, brnn, bst, care, caret, class,
clue, cluster, clusterSim, clValid, cmaes, CoxBoost, crs,
Cubist, DiceKriging, DiceOptim, DiscriMiner, e1071, earth,
elasticnet, elmNN, emoa, extraTrees, flare, FNN, frbs,
FSelector, gbm, GenSA, glmnet, Hmisc, irace, kernlab, kknn,
klaR, knitr, kohonen, laGP, LiblineaR, lqa, MASS, mboost, mco,
mda, mlbench, modeltools, mRMRe, nnet, nodeHarvest, pamr,
party, penalized, pls, pROC (>= 1.8), randomForest,
randomForestSRC (>= 1.6.1), RCurl, rFerns, rjson, rmarkdown,
robustbase, ROCR, rpart, rrlda, rsm, RWeka, sda, sparsediscrim,
sparseLDA, stepPlr, testthat, tgp, TH.data
ada, adabag, bartMachine, brnn, bst, care, caret (>= 6.0-57),
class, clue, cluster, clusterSim, clValid, cmaes, CoxBoost,
crs, Cubist, deepnet, DiceKriging, DiceOptim, DiscriMiner,
e1071, earth, elasticnet, elmNN, emoa, extraTrees, flare,
fields, FNN, frbs, FSelector, gbm, GenSA, glmnet, Hmisc, irace
(>= 1.0.7), kernlab, kknn, klaR, knitr, kohonen, laGP,
LiblineaR, lqa, MASS, mboost, mco, mda, mlbench, modeltools,
mRMRe, nnet, nodeHarvest (>= 0.7-3), neuralnet, numDeriv, pamr,
party, penalized, pls, PMCMR, pROC (>= 1.8), randomForest,
randomForestSRC (>= 1.6.1), ranger (>= 0.3.0), RCurl, rFerns,
rjson, rknn, rmarkdown, robustbase, ROCR, rotationForest,
rpart, rrlda, rsm, RSNNS, RWeka, sda, sparsediscrim, sparseLDA,
stepPlr, SwarmSVM, testthat, tgp, TH.data, xgboost, XML
ada, adabag, bartMachine, brnn, bst, care, caret (>= 6.0-57),
class, clue, cluster, clusterSim, clValid, cmaes, CoxBoost,
crs, Cubist, deepnet, DiceKriging, DiceOptim, DiscriMiner,
e1071, earth, elasticnet, elmNN, emoa, extraTrees, flare,
fields, FNN, fpc, frbs, FSelector, gbm, GenSA, glmnet, Hmisc,
irace (>= 1.0.7), kernlab, kknn, klaR, knitr, kohonen, laGP,
LiblineaR, lqa, MASS, mboost, mco, mda, mlbench, modeltools,
mRMRe, nnet, nodeHarvest (>= 0.7-3), neuralnet, numDeriv, pamr,
party, penalized, pls, PMCMR, pROC (>= 1.8), randomForest,
randomForestSRC (>= 2.0.5), ranger (>= 0.3.0), RCurl, rFerns,
rjson, rknn, rmarkdown, robustbase, ROCR, rotationForest,
rpart, rrlda, rsm, RSNNS, RWeka, sda, sparsediscrim, sparseLDA,
stepPlr, SwarmSVM, testthat, tgp, TH.data, xgboost, XML
ada, adabag, bartMachine, brnn, bst, C50, care, caret (>=
6.0-57), class, clue, cluster, clusterSim, clValid, cmaes,
CoxBoost, crs, Cubist, deepnet, DiceKriging, DiceOptim,
DiscriMiner, e1071, earth, elasticnet, elmNN, emoa, extraTrees,
flare, fields, FNN, fpc, frbs, FSelector, gbm, GenSA, glmnet,
h2o (>= 3.6.0.8), GPfit, Hmisc, irace (>= 1.0.7), kernlab,
kknn, klaR, knitr, kohonen, laGP, LiblineaR, lqa, MASS, mboost,
mco, mda, mlbench, modeltools, mRMRe, nnet, nodeHarvest (>=
0.7-3), neuralnet, numDeriv, pamr, party, penalized (>=
0.9-47), pls, PMCMR (>= 4.1), pROC (>= 1.8), randomForest,
randomForestSRC (>= 2.2.0), ranger (>= 0.5.0), RCurl, rFerns,
rjson, rknn, rmarkdown, robustbase, ROCR, rotationForest,
rpart, RRF, rrlda, rsm, RSNNS, RWeka, sda, smoof,
sparsediscrim, sparseLDA, stepPlr, SwarmSVM, svglite, testthat,
tgp, TH.data, xgboost, XML
callr, datasets, devtools, evaluate, future (>= 1.9.0),
future.apply (>= 1.1.0), future.callr, Matrix, rpart, testthat,
titanic
callr, datasets, evaluate, future (>= 1.9.0), future.apply
(>= 1.1.0), future.callr, Matrix, rpart, testthat, titanic
bibtex, callr, datasets, evaluate, future (>= 1.9.0),
future.apply (>= 1.1.0), future.callr, Matrix, rpart, testthat,
titanic
Matrix, bibtex, callr, datasets, evaluate, future (>= 1.9.0),
future.apply (>= 1.1.0), future.callr, progressr, rpart,
testthat, titanic
Matrix, callr, datasets, distr6, evaluate, future,
future.callr, mlr3data, progressr, rpart, testthat (>= 3.0.0)
Matrix, callr, codetools, datasets, distr6, evaluate,
future.callr, mlr3data, progressr, rpart, testthat (>= 3.0.0)
Matrix, callr, codetools, datasets, distr6, evaluate,
future.callr, mlr3data, progressr, remotes, rpart, testthat (>=
3.1.0)
Matrix, callr, codetools, datasets, distr6, future.callr,
mlr3data, progressr, remotes, rpart, testthat (>= 3.1.0)
Matrix, callr, codetools, datasets, future.callr, mlr3data,
progressr, remotes, rpart, testthat (>= 3.1.0)
Matrix, bibtex, callr, datasets, evaluate, future (>=
1.16.0), future.apply (>= 1.4.0), future.callr, mlr3data,
progressr, rpart, testthat
Matrix, bibtex, callr, datasets, evaluate, future,
future.callr, mlr3data, progressr, rpart, testthat
Matrix, bibtex, callr, datasets, distr6, evaluate, future,
future.callr, mlr3data, progressr, rpart, testthat
Matrix, callr, datasets, distr6, evaluate, future,
future.callr, mlr3data, progressr, rpart, testthat
mlr3, mlr3learners, PMCMR, rpart, testthat, xgboost
mlr3, mlr3learners, PMCMRplus, rpart, testthat, xgboost
bibtex, dbscan, e1071, mlbench, RWeka, testthat
dbscan, e1071, ClusterR, kernlab, apcluster, LPCM, mlbench,
RWeka, testthat
dbscan, e1071, ClusterR, kernlab, apcluster, LPCM, mclust,
mlbench, RWeka, testthat
DBI, dbplyr, lgr, RSQLite, testthat, tibble
DBI, RSQLite, dbplyr, future, future.apply, future.callr,
lgr, testthat, tibble
DBI, RSQLite, dbplyr, dplyr, duckdb, future, future.apply,
future.callr, lgr, testthat (>= 3.0.0), tibble
DBI, RSQLite, dbplyr, dplyr, duckdb (>= 0.3.1), future,
future.apply, future.callr, lgr, testthat (>= 3.0.0), tibble
DBI, RSQLite, dbplyr, dplyr, duckdb (>= 0.4.0), future,
future.apply, future.callr, lgr, testthat (>= 3.0.0), tibble
mlr3viz, rmarkdown, knitr, rpart, testthat (>= 3.0.0),
patchwork, ranger, mlr3learners, linprog, posterdown,
kableExtra, fairml, iml
care, FSelectorRcpp, lgr, mlr3learners, praznik, rpart,
testthat
care, FSelectorRcpp, lgr, mlr3learners, mlr3measures,
praznik, rpart, testthat
care, caret, FSelectorRcpp, lgr, mlr3learners, mlr3measures,
praznik, rpart, testthat
care, caret, FSelectorRcpp, lgr, mlr3learners, mlr3measures,
praznik, rpart, testthat (>= 3.0.0)
care, caret, FSelectorRcpp, knitr, lgr, mlr3learners,
mlr3measures, praznik, rpart, testthat (>= 3.0.0)
care, caret, carSurv, FSelectorRcpp, knitr, lgr,
mlr3learners, mlr3measures, mlr3pipelines, praznik, rpart,
testthat (>= 3.0.0), withr
emoa, mlr3learners, mlr3pipelines, rpart, testthat, xgboost
emoa, mlr3learners, mlr3pipelines, rpart, testthat (>=
3.0.0), xgboost
emoa, mlr3learners (>= 0.5.2), mlr3pipelines, rpart, testthat
(>= 3.0.0), xgboost
checkmate, DiceKriging, e1071, glmnet, kknn, lgr, MASS,
ranger, testthat, withr, xgboost
bibtex, checkmate, DiceKriging, e1071, glmnet, kknn, lgr,
MASS, ranger, testthat, withr, xgboost
bibtex, checkmate, DiceKriging, e1071, glmnet, kknn, lgr,
MASS, ranger, testthat, xgboost
bibtex, checkmate, DiceKriging, e1071, glmnet, kknn, knitr,
lgr, MASS, nnet, ranger, rmarkdown, testthat, xgboost
bibtex, checkmate, DiceKriging, distr6, e1071, glmnet, kknn,
knitr, lgr, MASS, mlr3proba (>= 0.2.1), nnet, pracma, ranger,
rgenoud, rmarkdown, testthat, xgboost
bibtex, checkmate, DiceKriging, distr6, e1071, glmnet, kknn,
knitr, lgr, MASS, mlr3proba (>= 0.2.2), nnet, pracma, ranger,
rgenoud, rmarkdown, testthat, xgboost
checkmate, DiceKriging, distr6, e1071, glmnet, kknn, knitr,
lgr, MASS, mlr3proba (>= 0.2.2), nnet, pracma, ranger, rgenoud,
rmarkdown, testthat, xgboost
checkmate, DiceKriging, distr6, e1071, glmnet, kknn, knitr,
lgr, MASS, mlr3proba (>= 0.2.5), nnet, pracma, ranger, rgenoud,
rmarkdown, testthat (>= 3.0.0), xgboost
checkmate, DiceKriging, distr6, e1071, glmnet, kknn, knitr,
lgr, MASS, mlr3proba (>= 0.3.2), nnet, pracma, ranger, rgenoud,
rmarkdown, testthat (>= 3.0.0), xgboost
DiceKriging, distr6, e1071, glmnet, kknn, knitr, lgr, MASS,
mlr3proba (>= 0.2.5), nnet, pracma, ranger, rgenoud, rmarkdown,
testthat (>= 3.0.0), xgboost
DiceKriging, distr6, e1071, glmnet, kknn, knitr, lgr, MASS,
nnet, pracma, ranger, rgenoud, rmarkdown, testthat (>= 3.0.0),
xgboost
DiceKriging, e1071, glmnet, kknn, knitr, lgr, MASS, nnet,
pracma, ranger, rgenoud, rmarkdown, testthat (>= 3.0.0),
xgboost (>= 1.6.0)
DiceKriging, knitr, lhs, mlr3learners (>= 0.5.4),
mlr3pipelines (>= 0.4.2), nloptr, ranger, rgenoud, rmarkdown,
rpart, spacefillr, stringi, testthat (>= 3.0.0),
bibtex, callr, evaluate, paradox, testthat
callr, evaluate, paradox, testthat (>= 3.0.0)
RWeka, farff, foreign, qs, testthat (>= 3.0.0)
RWeka, farff, foreign, qs, testthat (>= 3.0.0), withr
RWeka, farff, foreign, mlr3proba, qs, testthat (>= 3.0.0),
withr
DBI, duckdb, mlr3db (>= 0.5.0), qs, RWeka, testthat (>=
3.0.0)
ggplot2, glmnet, igraph, knitr, lgr, lme4, mlbench,
mlr3filters, mlr3learners, nloptr, rmarkdown, rpart, testthat,
visNetwork, bestNormalize, fastICA, kernlab, smotefamily
ggplot2, glmnet, igraph, knitr, lgr, lme4, mlbench,
mlr3filters (>= 0.1.1), mlr3learners, mlr3measures, nloptr,
rmarkdown, rpart, testthat, visNetwork, bestNormalize, fastICA,
kernlab, smotefamily, evaluate
ggplot2, glmnet, igraph, knitr, lme4, mlbench, mlr3filters
(>= 0.1.1), mlr3learners, mlr3measures, nloptr, quanteda,
rmarkdown, rpart, stopwords, testthat, visNetwork,
bestNormalize, fastICA, kernlab, smotefamily, evaluate, kknn
bibtex, ggplot2, glmnet, igraph, knitr, lme4, mlbench, bbotk
(>= 0.2.0), mlr3filters (>= 0.1.1), mlr3learners, mlr3measures,
nloptr, quanteda, rmarkdown, rpart, stopwords, testthat,
visNetwork, bestNormalize, fastICA, kernlab, smotefamily,
evaluate, NMF, MASS, kknn, GenSA, methods, vtreat
ggplot2, glmnet, igraph, knitr, lme4, mlbench, bbotk (>=
0.2.0), mlr3filters (>= 0.1.1), mlr3learners, mlr3measures,
nloptr, quanteda, rmarkdown, rpart, stopwords, testthat,
visNetwork, bestNormalize, fastICA, kernlab, smotefamily,
evaluate, NMF, MASS, kknn, GenSA, methods, vtreat
ggplot2, glmnet, igraph, knitr, lme4, mlbench, bbotk (>=
0.3.0), mlr3filters (>= 0.1.1), mlr3learners, mlr3measures,
nloptr, quanteda, rmarkdown, rpart, stopwords, testthat,
visNetwork, bestNormalize, fastICA, kernlab, smotefamily,
evaluate, NMF, MASS, kknn, GenSA, methods, vtreat
ggplot2, glmnet, igraph, knitr, lme4, mlbench, bbotk (>=
0.3.0), mlr3filters (>= 0.1.1), mlr3learners, mlr3measures,
nloptr, quanteda, rmarkdown, rpart, stopwords, testthat,
visNetwork, bestNormalize, fastICA, kernlab, smotefamily,
evaluate, NMF, MASS, kknn, GenSA, methods, vtreat, future
flexsurv, gbm, glmnet, knitr, lgr, mlr3tuning, pec,
penalized, randomForestSRC, ranger, riskRegression, rpart,
simsurv, survAUC, testthat
bibtex, flexsurv, gbm, glmnet, knitr, lgr, mlr3tuning, pec,
penalized, randomForestSRC, ranger, riskRegression, rpart,
simsurv, survAUC, survivalsvm, testthat
bibtex, flexsurv, gbm, glmnet, knitr, lgr, mboost,
mlr3tuning, obliqueRSF, pec, penalized, randomForestSRC,
ranger, riskRegression, rpart, set6, simsurv, survAUC,
survivalsvm, testthat
bibtex, flexsurv, gbm, glmnet, kerdiest, gss, knitr, ks, lgr,
logspline, locfit, mboost, mlr3tuning, np, obliqueRSF, pec,
penalized, pendensity, plugdensity, randomForestSRC, ranger,
riskRegression, rpart, set6, simsurv, sm, survAUC, survivalsvm,
testthat
bibtex, CoxBoost, flexsurv, gbm, ggplot2, glmnet, gss,
kerdiest, knitr, ks, lgr, logspline, locfit, Matrix, mboost,
mlr3tuning, np, obliqueRSF, pec, penalized, pendensity,
plugdensity, randomForestSRC, ranger, riskRegression, rpart,
set6, simsurv, sm, survAUC, survivalsvm, testthat, xgboost
bibtex, gbm, ggplot2, glmnet, knitr, lgr, Matrix, mboost,
mlr3tuning, pec, pracma, randomForestSRC, ranger,
riskRegression, rmarkdown, rpart, set6, simsurv, survAUC,
testthat, xgboost
bibtex, ggplot2, knitr, lgr, Matrix, mlr3tuning, pracma,
rmarkdown, rpart, set6 (>= 0.1.7), simsurv, survAUC, testthat
bibtex, ggplot2, knitr, lgr, Matrix, mlr3pipelines (>=
0.2.1), mlr3tuning, pracma, rmarkdown, rpart, set6 (>= 0.1.7),
simsurv, survAUC, testthat
bibtex, bujar, ggplot2, knitr, lgr, mlr3extralearners,
mlr3pipelines (>= 0.3.0), pracma, rpart, set6 (>= 0.1.7),
simsurv, survAUC, testthat
bujar, cubature, ggplot2, knitr, lgr, mlr3extralearners,
mlr3pipelines (>= 0.3.0), pracma, rpart, set6 (>= 0.1.7),
simsurv, survAUC, testthat
bujar, cubature, ggplot2, knitr, lgr, mlr3extralearners,
mlr3pipelines (>= 0.3.4), pracma, rpart, set6 (>= 0.1.7),
simsurv, survAUC, testthat
bujar, cubature, ggplot2, knitr, lgr, mlr3pipelines (>=
0.3.4), pracma, rpart, set6 (>= 0.1.7), simsurv, survAUC,
testthat
bujar, cubature, ggplot2, knitr, lgr, mlr3pipelines (>=
0.3.4), param6 (>= 0.2.4), pracma, rpart, set6 (>= 0.1.7),
simsurv, survAUC, testthat
testthat (>= 2.1.0), shinytest, devtools
bench, e1071, future, future.callr, knitr, mlr3learners (>=
0.4.5), mlr3tuning, paradox, ranger, raster, rgdal, rmarkdown,
rpart, sf, stars, testthat (>= 3.0.0)
bench, e1071, future, future.callr, knitr, mlr3learners (>=
0.4.5), mlr3tuning, paradox, ranger, raster, rgdal, rmarkdown,
rpart, sf, stars (>= 0.5-5), testthat (>= 3.0.0)
bench, future, future.callr, knitr, mlr3learners (>= 0.4.5),
paradox, ranger, raster, rgdal, rmarkdown, rpart, stars (>=
0.5-5), testthat (>= 3.0.0)
bbotk, blockCV (>= 2.1.1), CAST, ggsci, ggtext, GSIF, knitr,
lgr, mlr3filters, mlr3pipelines, mlr3tuning, patchwork, plotly,
rmarkdown, rpart, sf, skmeans, vdiffr, withr
bbotk, blockCV (>= 2.1.1), CAST, ggsci, ggtext, GSIF, knitr,
lgr, mlr3filters, mlr3pipelines, mlr3tuning, patchwork, plotly,
rmarkdown, rpart, sf, skmeans, testthat (>= 3.0.0), vdiffr,
withr
bbotk, blockCV (>= 2.1.1), CAST, ggsci, ggtext, GSIF, knitr,
lgr, mlr3filters, mlr3pipelines, mlr3tuning, patchwork, plotly,
raster, rmarkdown, rpart, sf, skmeans, testthat (>= 3.0.0),
vdiffr, withr
bbotk, blockCV (>= 2.1.1), CAST, ggsci, ggtext, knitr, lgr,
mlr3filters, mlr3pipelines, mlr3tuning, patchwork, plotly,
raster, rmarkdown, rpart, sf, skmeans, testthat (>= 3.0.0),
vdiffr, withr
bbotk, blockCV (>= 2.1.1), caret, CAST, ggsci, ggtext, knitr,
lgr, mlr3filters, mlr3pipelines, mlr3tuning, patchwork, plotly,
raster, rmarkdown, rpart, sf, skmeans, sperrorest, testthat (>=
3.0.0), vdiffr, withr
bbotk, blockCV (>= 2.1.1), caret, CAST, ggsci, ggtext, knitr,
lgr, mlr3filters, mlr3pipelines, mlr3tuning, patchwork, plotly,
raster, rgdal, rmarkdown, rpart, sf, skmeans, sperrorest,
testthat (>= 3.0.0), vdiffr (>= 1.0.0), withr
bbotk, blockCV (>= 2.1.4), caret, CAST, ggsci, ggtext, knitr,
lgr, mlr3filters, mlr3pipelines, mlr3tuning, patchwork, plotly,
raster, rgdal, rmarkdown, rpart, sf, skmeans, sperrorest,
testthat (>= 3.0.0), vdiffr (>= 1.0.0), withr
bbotk, blockCV (>= 2.1.4), caret, ggsci, ggtext, knitr, lgr,
mlr3filters, mlr3pipelines, mlr3tuning, patchwork, here,
plotly, raster, rgdal, rmarkdown, rpart, sf, skmeans,
sperrorest, terra, testthat (>= 3.0.0), vdiffr (>= 1.0.0),
withr
adagio, GenSA, irace, mlr3pipelines, nloptr, rpart, testthat
(>= 3.0.0)
adagio, GenSA, irace, mlr3pipelines, nloptr, rpart, testthat
(>= 3.0.0),
adagio, GenSA, irace, mlr3learners (>= 0.5.5), mlr3pipelines,
nloptr, rpart, testthat (>= 3.0.0), xgboost
bibtex, GenSA, mlr3pipelines, nloptr, rpart, testthat
GenSA, mlr3pipelines, nloptr, rpart, testthat
adagio, GenSA, mlr3pipelines, nloptr, rpart, testthat (>=
3.0.0)
GGally, lgr, mlr3 (>= 0.1.6), mlr3filters, mlr3proba,
precrec, rpart, survival, testthat
partykit, ggparty, GGally, lgr, mlr3 (>= 0.5.0), mlr3filters,
mlr3proba (>= 0.2.0), precrec, rpart, survival, testthat
partykit, ggparty, GGally, lgr, mlr3 (>= 0.6.0), mlr3filters,
mlr3proba (>= 0.2.2), precrec, rpart, survival, testthat
partykit, ggparty, GGally, ggfortify (>= 0.4.11), factoextra,
lgr, mlr3 (>= 0.6.0), mlr3filters, mlr3proba (>= 0.2.2),
mlr3cluster, precrec, rpart, survival, stats, cluster, testthat
cluster, distr6 (>= 1.4.4), factoextra, GGally, ggfortify (>=
0.4.11), ggparty, glmnet, lgr, mlr3 (>= 0.6.0), mlr3cluster,
mlr3filters, mlr3learners, mlr3proba (>= 0.2.3), partykit,
precrec, rpart, stats, survival, testthat
cluster, distr6 (>= 1.4.4), factoextra, GGally, ggfortify (>=
0.4.11), ggparty, glmnet, lgr, mlr3 (>= 0.6.0), mlr3cluster,
mlr3filters, mlr3learners, mlr3proba (>= 0.2.3), partykit,
precrec, rpart, stats, survival, testthat (>= 3.0.0)
bbotk, cluster, factoextra, GGally, ggfortify (>= 0.4.11),
ggparty, glmnet, knitr, lgr, mlr3 (>= 0.6.0), mlr3cluster,
mlr3filters, mlr3learners, mlr3tuning (>= 0.9.0), paradox,
partykit, patchwork (>= 1.1.1), precrec, ranger, rpart, stats,
testthat (>= 3.0.0), vdiffr (>= 1.0.2), xgboost
cluster, distr6 (>= 1.4.4), factoextra, GGally, ggfortify (>=
0.4.11), ggparty, glmnet, lgr, mlr3 (>= 0.6.0), mlr3cluster,
mlr3filters, mlr3learners, mlr3proba (>= 0.2.3), mlr3tuning (>=
0.7.0), paradox, partykit, patchwork (>= 1.1.1), precrec,
ranger, rpart, stats, survival, testthat (>= 3.0.0), xgboost
cluster, distr6 (>= 1.4.4), factoextra, GGally, ggfortify (>=
0.4.11), ggparty, glmnet, lgr, mlr3 (>= 0.6.0), mlr3cluster,
mlr3filters, mlr3learners, mlr3proba (>= 0.3.2), mlr3tuning (>=
0.7.0), paradox, partykit, patchwork (>= 1.1.1), precrec,
ranger, rpart, stats, survival, testthat (>= 3.0.0), xgboost
cluster, distr6 (>= 1.4.4), factoextra, GGally, ggfortify (>=
0.4.11), ggparty, glmnet, lgr, mlr3 (>= 0.6.0), mlr3cluster,
mlr3filters, mlr3learners, mlr3proba (>= 0.3.2), mlr3tuning (>=
0.9.0), paradox, partykit, patchwork (>= 1.1.1), precrec,
ranger, rpart, stats, survival, testthat (>= 3.0.0), vdiffr (>=
1.0.2), xgboost
bbotk, cluster, distr6 (>= 1.4.4), factoextra, GGally,
ggfortify (>= 0.4.11), ggparty, glmnet, lgr, mlr3 (>= 0.6.0),
mlr3cluster, mlr3filters, mlr3learners, mlr3proba (>= 0.3.2),
mlr3tuning (>= 0.9.0), paradox, partykit, patchwork (>= 1.1.1),
precrec, ranger, rpart, stats, survival, testthat (>= 3.0.0),
vdiffr (>= 1.0.2), xgboost
bbotk, cluster, distr6 (>= 1.6.9), factoextra, GGally,
ggfortify (>= 0.4.11), ggparty, glmnet, knitr, lgr, mlr3 (>=
0.6.0), mlr3cluster, mlr3filters, mlr3learners, mlr3proba (>=
0.3.2), mlr3tuning (>= 0.9.0), paradox, partykit, patchwork (>=
1.1.1), precrec, ranger, rpart, stats, survival, testthat (>=
3.0.0), vdiffr (>= 1.0.2), xgboost
bbotk, cluster, distr6 (>= 1.6.9), factoextra, GGally,
ggfortify (>= 0.4.11), ggparty, glmnet, knitr, lgr, mlr3 (>=
0.6.0), mlr3cluster, mlr3filters, mlr3learners, mlr3tuning (>=
0.9.0), paradox, partykit, patchwork (>= 1.1.1), precrec,
ranger, rpart, stats, testthat (>= 3.0.0), vdiffr (>= 1.0.2),
xgboost
party, rpart, mlbench, knitr, rmarkdown, testthat, mRMRe,
care, randomForestSRC, randomForest, ranger (>= 0.8.0), Rfast,
FSelector, e1071, DiscriMiner, digest, lintr, Hmisc, fastICA
party, rpart, mlbench, knitr, rmarkdown, testthat, mRMRe,
care, randomForestSRC, randomForest, ranger (>= 0.8.0), Rfast,
FSelector, e1071, DiscriMiner, digest, lintr, Hmisc, fastICA,
rex
care, party, rpart, mlbench, knitr, rmarkdown, testthat,
mRMRe, praznik, randomForestSRC, randomForest, ranger (>=
0.8.0), Rfast, FSelector, FSelectorRcpp, e1071, DiscriMiner,
digest, lintr, Hmisc, fastICA, rex
care, party, rpart, mlbench, knitr, rmarkdown, testthat,
mRMRe, praznik, randomForestSRC, randomForest, ranger (>=
0.8.0), Rfast, FSelector, FSelectorRcpp, e1071, digest, lintr,
Hmisc, fastICA, rex
care, party, rpart, mlbench, knitr, rmarkdown, testthat,
mRMRe, praznik, randomForestSRC, randomForest, ranger (>=
0.8.0), Rfast, FSelector, FSelectorRcpp, e1071, FNN, digest,
lintr, Hmisc, fastICA, rex
care, party, rpart, mlbench, knitr, rmarkdown, testthat,
mRMRe, digest, praznik, randomForestSRC, randomForest, ranger
(>= 0.8.0), Rfast, FSelector, FSelectorRcpp, e1071, FNN, lintr,
Hmisc, fastICA, rex
akima, cmaesr (>= 1.0.3), ggplot2, RColorBrewer, DiceKriging,
DiceOptim, earth, emoa, GGally, gridExtra, kernlab, kknn,
knitr, mco, nnet, party, randomForest, rmarkdown, rpart,
testthat, eaf, covr
akima, cmaesr (>= 1.0.3), ggplot2, RColorBrewer, DiceKriging,
DiceOptim, earth, emoa, GGally, gridExtra, kernlab, kknn,
knitr, mco, nnet, party, randomForest, rmarkdown, rgenoud,
rpart, testthat, covr
akima, cmaesr (>= 1.0.3), ggplot2, DiceKriging, DiceOptim,
earth, emoa, GGally, gridExtra, kernlab, kknn, knitr, mco,
nnet, party, randomForest, rmarkdown, rgenoud, rpart, testthat,
covr
cmaesr (>= 1.0.3), ggplot2, DiceKriging, earth, emoa, GGally,
gridExtra, kernlab, kknn, knitr, mco, nnet, party,
randomForest, reshape2, rmarkdown, rgenoud, rpart, testthat,
covr
akima, cmaesr (>= 1.0.3), ggplot2, DiceKriging, earth, emoa,
GGally, gridExtra, kernlab, kknn, knitr, mco, nnet, party,
randomForest, reshape2, rmarkdown, rgenoud, rpart, testthat,
covr
mlr, ParamHelpers, testthat, rgenoud, DiceKriging, emoa,
cmaesr, randomForest, smoof, lgr, mlr3, mlr3learners,
mlr3pipelines, mlrMBO, ranger, rpart
rmarkdown, knitr, testthat (>= 3.0.0), spelling
MASS, nnet, TH.data, survival, multcomp, alabama
variables, basefun, np, eha, truncreg, lattice, MASS,
TH.data, multcomp (>= 1.4-4), knitr, survival, prodlim,
gridExtra, nnet, HSAUR3, sandwich, flexsurv, grid,
latticeExtra, colorspace, mgcv, intcox, coxinterval, ICsurv,
polspline, logspline, bshazard, gss, MIICD, TransModel,
dynsurv, timereg, survivalMPL, gamlss, Matrix, muhaz, ICE,
ordinal, VGAM, AER, coin, gamlss.data, mlbench
variables, basefun, np, eha, truncreg, lattice, MASS,
TH.data, multcomp (>= 1.4-4), knitr, survival, prodlim,
gridExtra, nnet, HSAUR3, sandwich, flexsurv, grid,
latticeExtra, colorspace, mgcv, coxinterval, ICsurv, polspline,
logspline, bshazard, gss, MIICD, TransModel, dynsurv, timereg,
survivalMPL, gamlss, Matrix, muhaz, ICE, ordinal, VGAM, AER,
coin, gamlss.data, mlbench
variables, basefun, np, eha, truncreg, lattice, MASS,
TH.data, multcomp (>= 1.4-4), knitr, survival, prodlim,
gridExtra, nnet, HSAUR3, sandwich, flexsurv, grid,
latticeExtra, colorspace, mgcv, coxinterval, ICsurv, polspline,
logspline, bshazard, gss, MIICD, TransModel, dynsurv, timereg,
survivalMPL, gamlss, Matrix, muhaz, ICE, ordinal, VGAM, AER,
coin, gamlss.data, mlbench, alabama
variables, basefun, np, eha, truncreg, lattice, MASS,
TH.data, multcomp (>= 1.4-4), knitr, survival, prodlim,
gridExtra, nnet, HSAUR3, sandwich, flexsurv, grid,
latticeExtra, colorspace, mgcv, coxinterval, ICsurv, polspline,
logspline, bshazard, gss, MIICD, TransModel, dynsurv, timereg,
survivalMPL, gamlss, Matrix, muhaz, ICE, ordinal, VGAM, AER,
coin, gamlss.data, mlbench, tram
variables, basefun, MASS, TH.data, knitr, prodlim, gridExtra,
nnet, HSAUR3, sandwich, grid, latticeExtra, colorspace, mgcv,
coxinterval, ICsurv, polspline, logspline, bshazard, gss,
MIICD, TransModel, dynsurv, timereg, survivalMPL, gamlss,
Matrix, muhaz, ICE, ordinal, VGAM, AER, coin, gamlss.data,
mlbench, tram
variables, basefun, MASS, TH.data, knitr, prodlim, gridExtra,
nnet, HSAUR3, sandwich, grid, latticeExtra, colorspace, mgcv,
coxinterval, ICsurv, polspline, logspline, bshazard, gss,
MIICD, TransModel, dynsurv, timereg, survivalMPL, gamlss,
Matrix, muhaz, ICE, ordinal, VGAM, AER, coin, gamlss.data,
mlbench, tram (>= 0.6-0), rms
variables, basefun, MASS, TH.data, knitr, prodlim, gridExtra,
nnet, HSAUR3, sandwich, grid, latticeExtra, colorspace, mgcv,
coxinterval, ICsurv, polspline, logspline, bshazard, gss,
MIICD, TransModel, dynsurv, timereg, survivalMPL, gamlss,
Matrix, muhaz, ordinal, VGAM, AER, coin, gamlss.data, mlbench,
tram (>= 0.6-0), rms
variables, basefun, MASS, TH.data, knitr, prodlim, gridExtra,
nnet, HSAUR3, sandwich, grid, latticeExtra, colorspace, mgcv,
ICsurv, polspline, logspline, bshazard, gss, TransModel,
dynsurv, timereg, survivalMPL, gamlss, Matrix, muhaz, ordinal,
VGAM, AER, coin, gamlss.data, mlbench, tram (>= 0.6-0), rms
XML, Rcpp (>= 0.11.3), reshape2, gridExtra, shiny
devtools, testthat, covr, e1071, caret, knitr, rmarkdown,
ggplot2, ggpubr, cowplot, philentropy, Rtsne
testthat (>= 3.0.0), xml2, mvtnorm, R.rsp, mets
covr, devtools, testthat, knitr, rmarkdown
testthat, rmarkdown, knitr, randomForest, ggplot2, reshape2
emmeans (>= 1.6), estimability, knitr, rmarkdown, testthat
(>= 3.0.0), xml2
testthat (>= 1.0.2), mlbench (>= 2.1), lattice
rmarkdown, spatstat.geom, spatstat.core, spatstat (>= 2.0-0),
testthat, knitr
knitr, rmarkdown, Rcpp, cpp11, pkgload, decor
covr, fs, knitr, pkgload, rmarkdown, testthat, usethis
testthat, curl, jsonlite, datasets, withr
testthat, pkgload, curl, jsonlite, withr
cowplot, ggplot2, tidyr, knitr, rmarkdown
mvtnorm, TH.data, psychotools, strucchange, plyr, knitr,
ggbeeswarm, MASS
DALEX, parallelMap, randomForest, knitr, rmarkdown, testthat
DALEX (>= 0.4.9), parallelMap, randomForest, knitr,
rmarkdown, testthat
DALEX (>= 0.4.9), parallelMap, randomForest, knitr,
rmarkdown, testthat, spelling
DALEX (>= 0.4.9), parallelMap, randomForest, xgboost, knitr,
rmarkdown, testthat, spelling
DALEX (>= 1.0), parallelMap, randomForest, xgboost, knitr,
rmarkdown, testthat, spelling, covr
DALEX (>= 1.0), parallelMap, ranger, xgboost, knitr,
rmarkdown, testthat, spelling
parallelMap, ranger, xgboost, knitr, rmarkdown, testthat,
spelling
coda, covr, dplyr, gganimate, ggplot2, knitr, lme4, MASS,
merTools, rmarkdown, rstanarm, brms, see, testthat
coda, covr, dplyr, effectsize, gganimate, ggplot2, knitr,
lme4, MASS, merTools, rmarkdown, rstanarm, brms, see, testthat
coda, covr, dplyr, effectsize, gganimate, ggplot2, glmmTMB,
knitr, lme4, logspline, MASS, merTools, mgcv, rmarkdown,
rstanarm, brms, see, testthat
coda, dplyr, effectsize, gganimate, ggplot2, glmmTMB, knitr,
lme4, Matrix, logspline, MASS, merTools, mgcv, rmarkdown,
rstanarm, brms, see, testthat
brms, coda, dplyr, effectsize, gganimate, gamm4, ggplot2,
glmmTMB, knitr, lme4, logspline, Matrix, MASS, merTools, mgcv,
rmarkdown, rstanarm, see, testthat,
brms, coda, dplyr, effectsize, gamm4, gganimate, ggplot2,
glmmTMB, knitr, lme4, logspline, MASS, Matrix, merTools, mgcv,
rmarkdown, rstanarm, see, testthat, spelling
brms, coda, correlation, dplyr, emmeans (>= 1.5.3), gamm4,
gganimate, ggplot2, glmmTMB, knitr, lme4, logspline, MASS,
Matrix, merTools, mgcv, rmarkdown, rstanarm, rtdists, see,
testthat, spelling
brms, coda, correlation, dplyr, emmeans (>= 1.5.3), gamm4,
gganimate, ggplot2, glmmTMB, knitr, lme4, logspline, MASS,
Matrix, merTools, mgcv, patchwork, rmarkdown, rstanarm,
rtdists, see (>= 0.6.5), spelling, testthat
brms, coda, correlation, dplyr, emmeans (>= 1.5.3), forcats,
gamm4, gganimate, ggplot2, glmmTMB, knitr, lme4, logspline,
MASS, Matrix, marginaleffects, merTools, mgcv, patchwork,
rmarkdown, rstanarm, rtdists, see (>= 0.6.5), spelling,
testthat
brms, coda, correlation, dplyr, emmeans (>= 1.5.3), forcats,
gamm4, gganimate, ggplot2, glmmTMB, knitr, lme4, logspline,
MASS, Matrix, marginaleffects, merTools, mgcv, patchwork,
report, rmarkdown, rstanarm, rtdists, see (>= 0.6.5), spelling,
testthat
brms, coda, correlation, dplyr, emmeans (>= 1.5.3), forcats,
gamm4, gganimate, ggplot2, glmmTMB, knitr, lme4, logspline,
MASS, Matrix, marginaleffects, merTools, mgcv, patchwork,
report, rmarkdown, rstanarm, rtdists, see (>= 0.7.0), spelling,
testthat
brms, correlation, emmeans (>= 1.5.3), gamm4, gganimate,
ggplot2, glmmTMB, knitr, lme4, logspline, Matrix,
marginaleffects, mgcv, patchwork, poorman, report, rmarkdown,
rstanarm, rtdists, see (>= 0.7.0), testthat
rpart, e1071, randomForest, gbm, klaR, wmtsa, mlegp
class, rpart, e1071, kernlab, randomForest, klaR, wmtsa,
mlegp, splines
dbplyr, testthat, knitr, rmarkdown, nycflights13, RSQLite,
methods, DBI, tidypredict, dbplot, covr
dbplyr, testthat, knitr, rmarkdown, nycflights13, RSQLite,
methods, DBI, dbplot, covr
dbplyr, testthat, knitr, rmarkdown, nycflights13, RSQLite,
methods, DBI, covr
dbplyr, testthat (>= 2.1.0), knitr, rmarkdown, nycflights13,
RSQLite, methods, DBI, covr
covr, DBI, dbplyr, knitr, methods, nycflights13, rmarkdown,
RSQLite, testthat (>= 2.1.0)
testthat, knitr, rmarkdown, recipes, randomForest
mlr (>= 2.12.1), caret (>= 6.0), randomForest (>= 4.6.14),
nnet(>= 7.3-12), e1071, h2o, keras, knitr, rmarkdown, testthat,
xgboost, stringr, kableExtra, lattice, ranger, glmnet
compiler, covr, ggplot2, testthat (>= 3.0.0)
testthat, sandwich, lmtest, knitr, MASS, mice, gt
betareg, bookdown, broom.mixed, covr, digest, DT, estimatr,
fixest, flextable, gamlss, ggplot2, gt (>= 0.3.0), huxtable,
IRdisplay, knitr, lfe, lme4, lmtest, magick, officer,
rmarkdown, sandwich, spelling, survey, testthat, tibble, MASS,
mice, nnet, pscl, vdiffr
betareg, bookdown, broom.mixed, covr, digest, DT, estimatr,
fixest (> 0.10.3), flextable, future, future.apply, gamlss,
ggplot2, gt (>= 0.3.0), huxtable, IRdisplay, knitr, lfe, lme4,
lmtest, magick, officer, rmarkdown, sandwich, spelling, survey,
testthat, tibble, MASS, mice, nnet, pscl, vdiffr
testthat, sandwich, lmtest, knitr, MASS, mice
lmtest, MASS, sandwich, testthat, rmarkdown
broom.mixed, flextable, huxtable, lmtest, MASS, officer,
sandwich, testthat
broom.mixed, covr, estimatr, fabricatr, flextable, huxtable,
lmtest, MASS, officer, randomizr, sandwich, testthat
broom.mixed, estimatr, flextable, gt (>= 0.2.0), huxtable,
lmtest, officer, testthat, vdiffr
broom.mixed, estimatr, flextable, ggplot2, gt, huxtable,
knitr, lmtest, officer, rmarkdown, testthat, vdiffr
broom.mixed, estimatr, fixest, flextable, ggplot2, gt,
huxtable, knitr, lfe, lmtest, nnet, officer, rmarkdown,
sandwich, testthat, tibble, vdiffr
broom.mixed, estimatr, flextable, fixest, ggplot2, gt,
huxtable, knitr, lme4, lmtest, mice, nnet, officer, rmarkdown,
sandwich, testthat, tibble, vdiffr
broom.mixed, estimatr, flextable, fixest, ggplot2, gt,
huxtable, knitr, lme4, lmtest, nnet, officer, rmarkdown,
sandwich, testthat, tibble, vdiffr
broom.mixed, estimatr, flextable, fixest, ggplot2, gt,
huxtable, knitr, lme4, lmtest, nnet, officer, rmarkdown,
sandwich, testthat, tibble, vdiffr, spelling
broom.mixed, estimatr, flextable, fixest, gamlss, ggplot2,
gt, huxtable, knitr, lme4, lmtest, nnet, officer, rmarkdown,
sandwich, testthat, vdiffr, spelling
AER, broom.mixed, estimatr, flextable, fixest, gamlss,
ggplot2, gt, huxtable, IRdisplay, knitr, lme4, lmtest, MASS,
nnet, officer, rmarkdown, sandwich, testthat, vdiffr, spelling,
covr
AER, broom.mixed, estimatr, flextable, fixest, gamlss,
ggplot2, gt (>= 0.3.0), huxtable, IRdisplay, knitr, lme4,
lmtest, MASS, nnet, officer, rmarkdown, sandwich, testthat,
vdiffr, spelling, covr
AER, broom.mixed, digest, estimatr, flextable, fixest,
gamlss, ggplot2, gt (>= 0.3.0), huxtable, IRdisplay, knitr,
lme4, lmtest, MASS, nnet, officer, rmarkdown, sandwich,
testthat, vdiffr, spelling, covr
AER, betareg, bookdown, broom.mixed, covr, did, digest,
estimatr, fixest, flextable, gamlss, ggplot2, gt (>= 0.3.0),
huxtable, IRdisplay, knitr, ivreg, lfe, lme4, lmtest, magick,
officer, rmarkdown, sandwich, spelling, testthat, MASS, mice,
nnet, pscl, vdiffr
betareg, bookdown, broom.mixed, covr, digest, DT, estimatr,
fixest, flextable, gamlss, ggplot2, gt (>= 0.3.0), huxtable,
IRdisplay, knitr, lfe, lme4, lmtest, magick, officer,
rmarkdown, sandwich, spelling, testthat, MASS, mice, nnet,
pscl, vdiffr
betareg, bookdown, broom.mixed, covr, digest, DT, estimatr,
fixest, flextable, gamlss, ggplot2, gt (>= 0.3.0), huxtable,
IRdisplay, knitr, lfe, lme4, lmtest, magick, officer,
rmarkdown, sandwich, spelling, testthat, tibble, MASS, mice,
nnet, pscl, vdiffr
betareg, bookdown, broom.mixed, covr, digest, DT, estimatr,
fixest (> 0.10.3), flextable, future, future.apply, gamlss,
ggplot2, gt (>= 0.3.0), huxtable, IRdisplay, knitr, lfe, lme4,
lmtest, magick, marginaleffects, officer, parallel, rmarkdown,
sandwich, spelling, survey, testthat, tibble, MASS, mice, nnet,
pscl, vdiffr
betareg, bookdown, broom.mixed, clubSandwich, covr, digest,
DT, estimatr, fixest (> 0.10.3), flextable, future,
future.apply, gamlss, ggplot2, gt (>= 0.3.0), haven, huxtable,
IRdisplay, knitr, lfe, lme4, lmtest, magick, marginaleffects,
MASS, mgcv, mice, nnet, officer, openxlsx, parallel, pscl,
rmarkdown, sandwich, spelling, survey, testthat, tibble,
tidyselect, vdiffr
betareg, bookdown, broom.mixed, clubSandwich, covr, digest,
DT, estimatr, fixest (> 0.10.3), flextable, future,
future.apply, gamlss, ggplot2, gt (>= 0.3.0), haven, huxtable,
IRdisplay, knitr, lfe, lme4, lmtest, magick, marginaleffects,
MASS, mgcv, mice, nlme, nnet, officer, openxlsx, parallel,
pscl, rmarkdown, sandwich, spelling, survey, testthat, tibble,
tidyselect, vdiffr
recipes, rsample, tune, tidyverse, lubridate, testthat,
roxygen2, kernlab, earth, randomForest, tidyquant, knitr,
rmarkdown
tidymodels, recipes, rsample, tune, tidyverse, lubridate,
testthat, roxygen2, kernlab, earth, randomForest, tidyquant,
knitr, rmarkdown
rstan, tidymodels, recipes, rsample, tune, tidyverse,
lubridate, testthat, roxygen2, kernlab, earth, randomForest,
tidyquant, knitr, rmarkdown, webshot
rstan, tidymodels, recipes, rsample, tune, tidyverse,
lubridate, progress, testthat, roxygen2, kernlab, earth,
randomForest, tidyquant, knitr, rmarkdown, webshot, covr
rstan, slider, tidymodels, recipes, rsample, tune, tidyverse,
lubridate, progress, testthat, roxygen2, kernlab, earth,
randomForest, tidyquant, knitr, rmarkdown, webshot, covr
rstan, slider, tidymodels, workflowsets, recipes, rsample,
tune, tidyverse, lubridate, progress, testthat, roxygen2,
kernlab, earth, randomForest, tidyquant, knitr, rmarkdown,
webshot, qpdf, covr
rstan, slider, tidymodels, workflowsets, recipes, rsample,
tune, tidyverse, lubridate, progress, testthat, roxygen2,
kernlab, thief, earth, randomForest, tidyquant, knitr,
rmarkdown (>= 2.9), webshot, qpdf, covr
rstan, slider, tidymodels, workflowsets, recipes, rsample,
tune, tidyverse, lubridate, progress, testthat, roxygen2,
kernlab, thief, earth, randomForest, tidyquant, knitr,
rmarkdown (>= 2.9), webshot, qpdf, covr, TSrepr
rstan, slider, sparklyr, tidymodels, workflowsets, recipes,
rsample, tune, tidyverse, lubridate, progress, testthat,
roxygen2, kernlab, thief, smooth, greybox, earth, randomForest,
tidyquant, knitr, rmarkdown (>= 2.9), webshot, qpdf, covr,
TSrepr
rstan, slider, sparklyr, tidymodels, workflowsets, recipes,
rsample, tune, tidyverse, lubridate, progress, testthat,
roxygen2, kernlab, glmnet, thief, smooth, greybox, earth,
randomForest, tidyquant, knitr, rmarkdown (>= 2.9), webshot,
qpdf, covr, TSrepr
rstan, slider, sparklyr, tidymodels, workflowsets, recipes,
rsample, tune (>= 0.2.0), tidyverse, lubridate, progress,
testthat, roxygen2, kernlab, glmnet, thief, smooth, greybox,
earth, randomForest, tidyquant, trelliscopejs, knitr, rmarkdown
(>= 2.9), webshot, qpdf, covr, TSrepr
roxygen2, testthat, tidymodels, tidyverse, lubridate, knitr,
rmarkdown, covr, remotes
roxygen2, testthat, tidymodels, xgboost, tidyverse,
lubridate, knitr, rmarkdown, covr, remotes
roxygen2, earth, testthat, tidymodels, xgboost, tidyverse,
lubridate, knitr, rmarkdown, covr, remotes
roxygen2, earth, testthat, tidymodels, xgboost, tidyverse,
lubridate, knitr, rmarkdown, covr, qpdf, remotes
crayon, dials, glmnet, progressr, utils, roxygen2, earth,
testthat, tidymodels, xgboost, tidyverse, lubridate, knitr,
rmarkdown, covr, qpdf, remotes
gt, crayon, dials, glmnet, progressr, utils, roxygen2, earth,
testthat, tidymodels, xgboost, tidyverse, lubridate, knitr,
rmarkdown, covr, qpdf, remotes
tidyverse, tidymodels, knitr, rmarkdown, roxygen2, testthat
tidymodels, workflows, tidyverse, knitr, rmarkdown, roxygen2,
testthat (>= 3.0.0), covr
roxygen2, testthat, tidymodels, tidyverse, tidyquant, glmnet,
lubridate, knitr, rmarkdown, covr, remotes
testthat, covr, rmarkdown, vdiffr, ggplot2movies, openintro,
patchwork, viridis, readr
testthat, covr, rmarkdown, vdiffr, openintro, patchwork,
viridis, readr
testthat, covr, rmarkdown, vdiffr, openintro, patchwork,
viridis, readr, nycflights13
trend, testthat, knitr, rmarkdown,covr, roxygen2
knitr, rmarkdown, testthat, sandwich, AER
disposables, testthat, devtools, knitr, parallel
testthat, devtools, knitr, lintr, rmarkdown, parallel
disposables, testthat, devtools, knitr, rmarkdown, parallel
disposables, testthat, devtools, knitr, lintr, rmarkdown,
parallel
knitr, rmarkdown, pander, dplyr, testthat, igraph
testthat, setRNG, knitr, splines, splines2
testthat, setRNG, knitr, splines, splines2 (>= 0.2.8)
testthat, setRNG, knitr, splines, splines2 (>= 0.2.8),
webshot, ctmcmove, R.rsp
testthat, setRNG, splines, splines2 (>= 0.2.8), R.rsp
testthat, setRNG, splines, splines2 (>= 0.2.8), R.rsp,
raster, conicfit, ggplot2, ggmap, lubridate, dplyr, magrittr,
scatterplot3d, BB, expm, matrixcalc, moveHMM
testthat, setRNG, splines, splines2 (>= 0.2.8), R.rsp,
raster, conicfit, ggplot2, ggmap, lubridate, dplyr, magrittr,
scatterplot3d, BB, expm, matrixcalc, moveHMM, extraDistr,
data.tree (>= 1.0.0), geosphere, mitools, doFuture, future,
car, survival, prodlim, nleqslv, qdapRegex
testthat, setRNG, splines, splines2 (>= 0.2.8), R.rsp,
conicfit, ggplot2, ggmap, lubridate, dplyr, magrittr,
scatterplot3d, BB, expm, matrixcalc, moveHMM, extraDistr,
data.tree (>= 1.0.0), geosphere, mitools, doFuture, future,
car, survival, prodlim, nleqslv, qdapRegex
testthat (>= 3.0.0), mongolite (>= 2.2.0), nycflights13
testthat, knitr, rmarkdown, tidytext, gutenbergr, dplyr
knitr, mice, rmarkdown, covr, testthat (>= 3.0.0)
knitr, rmarkdown, prettyunits, lubridate, testthat
testthat, knitr, ggplot2, ztable, sjlabelled, rmarkdown
testthat, knitr, ggplot2, sjlabelled, rmarkdown
testthat, knitr, ggplot2, sjlabelled, ztable, rmarkdown
knitr, rmarkdown, stringi, testthat (>= 3.0.0), tidyverse
doParallel, knitr, rmarkdown, rmdformats, GDAtools,
RColorBrewer, caret, pROC, tidyverse, e1071
dplyr, fs, ggplot2, here, knitr, remotes, rmarkdown, testthat
(>= 3.0.0), utils
devtools, flexmix, parallel, testthat, roxygen2, tensor,
nloptr
devtools, flexmix, parallel, testthat, roxygen2
dclone, ggmcmc, ggplot2, gridExtra, lattice, rjags
testthat, knitr, rmarkdown, tidyverse, tidyr, dplyr, ggplot2,
RCurl
testthat, knitr, rmarkdown, tidyr, dplyr, ggplot2, RCurl
testthat, knitr, rmarkdown, tidyr, dplyr, ggplot2
lubridate, fastR, magrittr, NHANES, RCurl, sp, maptools, vcd,
testthat, tidyr, knitr, tools, parallel, mapproj
lubridate, fastR, magrittr, NHANES, RCurl, sp, maptools, vcd,
testthat, tidyr, knitr, tools, parallel, mapproj, rgl
lubridate, fastR, magrittr, NHANES, RCurl, sp, maptools, vcd,
testthat, knitr, tools, parallel, mapproj, rgl, rmarkdown
lubridate, fastR, magrittr, NHANES, RCurl, sp, maptools, vcd,
testthat, tidyr, knitr, tools, parallel, mapproj, rgl,
rmarkdown
MASS, reshape2, manipulate, vcd, testthat
MASS, reshape2, manipulate, vcd, RCurl, testthat
MASS, reshape2, ggplot2, plyr, maptools, manipulate, vcd,
RCurl, testthat
MASS, reshape2, ggplot2, plyr, maptools, manipulate, vcd,
RCurl, testthat, knitr, tools
MASS, reshape2, ggplot2, plyr, maptools, manipulate, vcd,
RCurl, testthat, knitr, tools, parallel
MASS, maptools, manipulate, vcd, RCurl, testthat, knitr,
R.rsp, tools, parallel
NHANES, RCurl, maptools, vcd, testthat, knitr, R.rsp, tools,
parallel, mapproj
NHANES, RCurl, sp, maptools, vcd, testthat, tidyr, knitr,
R.rsp, tools, parallel, mapproj
vdiffr, lubridate, fastR, magrittr, NHANES, RCurl, sp,
maptools, vcd, testthat, knitr, tools, parallel, mapproj, rgl,
rmarkdown, covr
vdiffr, lubridate, magrittr, NHANES, RCurl, sp, maptools,
vcd, testthat, knitr, tools, parallel, mapproj, rgl, rmarkdown,
covr, formatR
vdiffr, lubridate, magrittr, NHANES, RCurl, sp, maptools,
vcd, testthat, knitr, tools, parallel, mapproj, rgl, rmarkdown,
covr, formatR, palmerpenguins
ggstance, ggridges, vdiffr, lubridate, magrittr, NHANES,
RCurl, sp, maptools, vcd, testthat, knitr, tools, parallel,
mapproj, rgl, rmarkdown, covr, formatR, palmerpenguins,
ggrepel, readr, ggdendro, gridExtra, splines, latticeExtra,
glue, broom, leaflet
testthat, knitr, palmerpenguins, rmarkdown, mosaicData
mosaicData, mosaic, ggformula, NHANES, testthat
mosaicData, mosaic, ggformula, NHANES, testthat, mosaicCalc
(>= 0.5.9)
lattice, mosaic, reshape2, ggplot2, dplyr
lattice, mosaic, reshape2, ggplot2, dplyr, tidyr, ggformula
knitr, ggplot2, magrittr, testthat, rpart, parallel, praznik,
mlrMBO, emoa, DiceKriging, rgenoud, randomForest, digest
covr, dplyr, spdep, knitr, rmarkdown, testthat (>= 2.1.0)
covr, dplyr, spdep, knitr, rmarkdown, testthat (>= 2.1.0),
terra
ergm, knitr, pkgdown, rmarkdown, shiny, testthat (>= 2.1.0)
lattice, slam, tm (>= 0.5-8.5), vcd, SnowballC
lattice, tm (>= 0.5-8.5), vcd, SnowballC, HSAUR2, colorspace
lattice, tm (>= 0.5-8.5), vcd, SnowballC, HSAUR2, colorspace,
corpus.useR.2008.abstracts
lattice, tm (>= 0.6-2), vcd, SnowballC, HSAUR2, colorspace,
corpus.useR.2008.abstracts
lattice, tm (>= 0.7-5), vcd, SnowballC, HSAUR2, colorspace,
corpus.useR.2008.abstracts
lattice, tm (>= 0.7-5), vcd, SnowballC, HSAUR3, colorspace,
corpus.useR.2008.abstracts, flexmix (>= 2.3-17), methods
RCurl, RUnit, adehabitatHR, circular, ggmap, mapproj
RCurl, RUnit, adehabitatHR, adehabitatLT, circular, ggmap,
mapproj, maptools
RCurl, RUnit, adehabitatHR, adehabitatLT, circular, ggmap,
mapproj, maptools, testthat
RCurl, adehabitatHR, adehabitatLT, circular, ggmap, mapproj,
maptools, testthat
adehabitatHR, adehabitatLT, circular, ggmap, mapproj,
maptools, testthat
adehabitatHR, adehabitatLT, circular, ggmap, mapproj,
maptools, testthat, knitr, ggplot2, leaflet, lubridate, ctmm,
bcpa, EMbC
adehabitatHR, adehabitatLT, circular, ggmap, mapproj,
maptools, testthat, knitr, ggplot2, leaflet, lubridate, ctmm,
amt, bcpa, EMbC
adehabitatHR, adehabitatLT, markdown, rmarkdown, circular,
ggmap, mapproj, maptools, testthat, knitr, ggplot2, leaflet,
lubridate, ctmm, amt, bcpa, EMbC
aod, asreml, happy.hbrem, Heatplus, MASS, VPdtw, lattice
testthat, knitr, rmarkdown, gridExtra, Heatplus
zic, R.rsp, knitr, rmarkdown, gdata, e1071
zic, R.rsp, knitr, rmarkdown, gdata, e1071, SparseM, slam
curl, dbx, ggplot2, httr, lme4, lmerTest, progressr, rlang,
rvest, sodium, testthat (>= 3.0.0), vroom
curl, dbx, ggplot2, httr, knitr, lifecycle, lme4, lmerTest,
progressr, rmarkdown, rvest, sodium, testthat (>= 3.0.0), vroom
cli, curl, ggplot2, httr, knitr, lintr, lme4, lmerTest,
progressr, rmarkdown, rvest, sodium, testthat (>= 3.0.0), vroom
knitr, rmarkdown, testthat, spelling, covr, markdown (>=
1.1), tidyverse, modelsummary
knitr, rmarkdown, testthat, spelling, covr, markdown (>=
1.1), tidyverse, modelsummary, broom
knitr, mvoutlier, glmulti, rmarkdown, DT, MASS
testthat (>= 2.1.0), magrittr, dplyr, covr
BMA, bkmr, bws, infinitefactor, knitr, NHANES, qgcomp,
rmarkdown, rstan, testthat, openxlsx
flextable, knitr, rmarkdown, testthat (>= 3.0.0), utils
testthat, rjags (>= 4-9), tidyverse, knitr, ggplot2, ggmcmc,
foreign, DescTools, bayesmeta, utils, kableExtra, roxygen2,
bookdown
testthat, rjags (>= 4-9), tidyverse, knitr, ggplot2, ggmcmc,
foreign, DescTools, bayesmeta, utils, kableExtra, roxygen2,
bookdown, MendelianRandomization
testthat, geojsonio, rgdal, rgeos, knitr, rmapshaper, covr
roxygen2 (>= 6.0.1), testthat, geojsonio, rgdal, rgeos,
knitr, rmapshaper
roxygen2 (>= 6.0.1), testthat, rgdal, rgeos, knitr,
rmapshaper
testthat (>= 2.1.0), covr, knitr, rmarkdown, glue
lattice, testthat, xml2 (>= 1.2.0), rmarkdown, yaml, knitr
lattice, testthat, xml2 (>= 1.2.0), rmarkdown, yaml, knitr,
data.table
lattice, testthat, xml2 (>= 1.2.0), rmarkdown, yaml, knitr,
data.table, pmxTools
lattice, testthat, xml2 (>= 1.2.0), rmarkdown
lattice, testthat, xml2 (>= 1.3.2), rmarkdown, yaml, knitr,
data.table (>= 1.14.2), pmxTools
haven, tibble, rmarkdown, knitr, testthat (>= 2.1.0)
haven, tibble, rmarkdown, knitr, testthat (>= 3.0.0)
Biostrings, knitr, rmarkdown, testthat (>= 3.0.0)
knitr, rmarkdown, covr, testthat (>= 2.1.0), rvest, xml2, zoo
knitr, rmarkdown, testthat, RcppArmadillo, RcppProgress
rmarkdown, knitr, insuranceData, reticulate, caret, testthat
(>= 3.0.0), covr
testthat, knitr, rmarkdown, roxygen2, usethis
mvtnorm, testthat, knitr, rmarkdown, strucchange
cmprsk, ggplot2, knitr, rmarkdown, relsurv (>= 2.2-5)
rmarkdown (>= 1.16), knitr, testthat (>= 3.0.0)
knitr, rmarkdown, testthat, geozoo, plotly, kableExtra
knitr, rmarkdown, testthat, geozoo, kableExtra, plotly
testthat, RSQLite, dbplyr, sf (>= 0.5.5), covr, tidyverse,
knitr, rmarkdown
testthat, RSQLite, dbplyr, sf (>= 0.5.5), covr, knitr,
rmarkdown, hms
testthat, RSQLite, dbplyr, sf (>= 0.5.5), covr, knitr,
rmarkdown
testthat (>= 2.1.0), RSQLite, dbplyr, sf (>= 0.5.5), covr,
hms, knitr, rmarkdown
testthat (>= 2.1.0), sf (>= 0.5.5), covr, hms, knitr,
rmarkdown
lme4, nlme, survival, robustbase, mboost, coin
lme4 (>= 0.999375-16), nlme, survival, robustbase, mboost, coin
lme4 (>= 0.999375-16), nlme, survival, robustbase, mboost,
coin, MASS, car, foreign, xtable
lme4 (>= 0.999375-16), nlme, robustbase, mboost, coin, MASS,
car, foreign, xtable
lme4 (>= 0.999375-16), nlme, robustbase, mboost, coin, MASS,
car, foreign, xtable, sandwich
lme4 (>= 0.999375-16), nlme, robustbase, mboost, coin, MASS,
car, foreign, xtable, sandwich, lmtest, coxme (>= 2.2-1)
lme4 (>= 0.999375-16), nlme, robustbase, mboost, coin, MASS,
car, foreign, xtable, sandwich, lmtest
lme4 (>= 0.999375-16), nlme, robustbase, mboost, coin, MASS,
car, foreign, xtable, sandwich, lmtest, coxme (>= 2.2-1),
TH.data
lme4 (>= 0.999375-16), nlme, robustbase, mboost, coin, MASS,
car, foreign, xtable, sandwich, lmtest, coxme
lme4 (>= 0.999375-16), nlme, robustbase, mboost, coin, MASS,
car, foreign, xtable, lmtest, coxme (>= 2.2-1), TH.data,
SimComp, multmod
lme4 (>= 0.999375-16), nlme, robustbase, mboost, coin, MASS,
car, foreign, xtable, lmtest, coxme (>= 2.2-1), SimComp
lme4 (>= 0.999375-16), nlme, robustbase, mboost, coin, MASS,
car, foreign, xtable, lmtest, coxme (>= 2.2-1), SimComp, ISwR
lme4 (>= 0.999375-16), nlme, robustbase, coin, MASS, car,
foreign, xtable, lmtest, coxme (>= 2.2-1), SimComp, ISwR
lme4 (>= 0.999375-16), nlme, robustbase, coin, MASS, foreign,
xtable, lmtest, coxme (>= 2.2-1), SimComp, ISwR, tram (>=
0.2-5)
lme4 (>= 0.999375-16), nlme, robustbase, coin, MASS, foreign,
xtable, lmtest, coxme (>= 2.2-1), SimComp, ISwR, tram (>=
0.2-5), fixest (>= 0.10)
BiocManager, Biobase, switchBox, knitr, rmarkdown, BiocStyle,
leukemiasEset, qpdf
covr, knitr, rmarkdown, testthat, viridisLite
covr, fansi, knitr, rmarkdown, testthat, viridisLite,
wesanderson
knitr, rmarkdown, overlapping (>= 1.7), rio (>= 0.5.29)
covr, knitr, lubridate, mgcv, nycflights13, rmarkdown,
testthat (>= 3.0.0), vroom
covr, knitr, lubridate, mgcv, nycflights13, rmarkdown,
testthat (>= 3.0.2), vroom, withr
ggplot2, forcats, tidyr, gridExtra, knitr, patchwork, car
testthat, knitr, rmarkdown, devtools, dplyr, ggplot2
contrast, covr, gee, knitr, nlme, rmarkdown, spelling,
testthat, tidymodels
covr, gee, knitr, nlme, rmarkdown, spelling, testthat,
tidymodels
covr, gee, ggplot2, knitr, nlme, rmarkdown, spelling,
testthat, tidymodels
sand, statnet, mixer, data.table, testthat
sand, statnet, data.table, testthat, igraphdata
testthat (>= 2.1.0), knitr, rmarkdown, parallel, R.rsp,
rprojroot, loo (>= 2.0.0), logitnorm, crayon, tidygraph
testthat (>= 2.1.0), knitr, rmarkdown, parallel, R.rsp,
rprojroot, loo (>= 2.0.0), logitnorm, crayon, tidygraph,
pkgdown
testthat (>= 2.1.0), withr, knitr, rmarkdown, parallel,
R.rsp, rprojroot, loo (>= 2.0.0), logitnorm, crayon, tidygraph,
pkgdown
grDevices, lattice (>= 0.20-35), roxygen2 (>= 6.0.1),
VennDiagram (>= 1.6.17), knitr, rmarkdown, markdown
ComplexHeatmap (>= 1.14.0), grDevices, lattice (>= 0.20-35),
roxygen2 (>= 6.0.1), VennDiagram (>= 1.6.17), knitr, rmarkdown,
markdown
ComplexHeatmap (>= 1.14.0), grDevices, lattice (>= 0.20-35),
roxygen2 (>= 6.0.1), VennDiagram (>= 1.6.18), knitr, rmarkdown,
markdown
ComplexHeatmap (>= 1.17.1), grDevices, lattice (>= 0.20-35),
roxygen2 (>= 6.0.1), VennDiagram (>= 1.6.20), knitr, rmarkdown,
markdown
grDevices, lattice (>= 0.20-33), roxygen2 (>= 5.0.1),
VennDiagram (>= 1.6.16)
flexsurv, mstate, microbenchmark, rmarkdown, knitr
flexsurv, mstate, microbenchmark, rmarkdown, knitr, testthat,
covr
covr, knitr, flexsurv, mstate, microbenchmark, rmarkdown,
testthat
MASS, lattice, testthat, arm, ggplot2, rbenchmark, scales,
vegan
ggplot2 (>= 3.0.0), testthat (>= 2.1.0), highr, lubridate,
rmarkdown, covr, broom, boot, gganimate, gifski, forcats,
stringr, cowplot, tidybayes, png, stringi, modelr, styler
ggplot2 (>= 3.0.0), testthat (>= 2.1.0), highr, rmarkdown,
covr, broom, boot, gganimate, gifski, forcats, stringr,
cowplot, tidybayes, png, stringi, modelr, styler, future
testthat (>= 3.0.0), waldo, devtools, withr, callr
knitr, rmarkdown, testthat (>= 3.0.0), xfun
microbenchmark, mgcv, knitr, rmarkdown, flextable
covr (>= 3.3.0), spelling (>= 2.1), testthat (>= 2.1.0),
tictoc (>= 1.0), knitr, rmarkdown
dplyr, reshape2, kableExtra, gridExtra,
BSgenome.Hsapiens.UCSC.hg19, knitr, rmarkdown, BSgenome,
GenomicRanges, IRanges, GenomeInfoDb
dplyr, reshape2, kableExtra, gridExtra, knitr, rmarkdown
fdrtool, multtest (>= 2.2.0), mvtnorm, qvalue
fdrtool, multtest (>= 2.2.0), mvtnorm, qvalue, RUnit
testthat, knitr, dagitty, ggdag, dplyr, rmarkdown
testthat, knitr, dagitty, ggdag, dplyr, rmarkdown, ggplot2
PCMBaseCpp (>= 0.1.9), geiger, ggplot2, knitr, rdryad (>=
1.0.0), rmarkdown
PCMBaseCpp (>= 0.1.9), geiger, ggplot2, knitr, rmarkdown,
mvMORPH
PCMBaseCpp (>= 0.1.9), ggplot2, knitr, rmarkdown, mvMORPH
PCMBaseCpp (>= 0.1.9), ggplot2, knitr, rmarkdown, mvMORPH,
testthat
tidyverse, scales, MASS, testthat (>= 2.1.0), pkgdown (>=
1.5.1), covr, knitr, rmarkdown, kableExtra
knitr, rmarkdown, ggplot2, tibble, patchwork, rgl, dplyr
knitr, testthat, mvtnorm, microbenchmark, MASS, plyr
knitr, testthat, mvtnorm, microbenchmark, MASS, plyr,
RhpcBLASctl
knitr, rmarkdown, testthat, mvtnorm, microbenchmark, MASS,
plyr, RhpcBLASctl
dplyr, furrr, knitr, MASS, nnet, parallel, rmarkdown, stats,
stringr, testthat, textmineR, tidytext
dplyr, furrr, knitr, MASS, nnet, parallel, rmarkdown, stats,
stringr, testthat, textmineR, tidytext, spelling
testthat, plyr, MASS, parallel, lars, ggplot2, knitr,
rmarkdown
fracdiff, ggplot2, gridExtra, testthat, knitr
fracdiff, ggplot2, testthat, knitr, rmarkdown
knitr, rmarkdown, mathjaxr, testthat, BioNet, roxygen2, DLBCL
knitr, rmarkdown, ggplot2 (>= 3.1.0), datasets (>= 3.5.1)
knitr, rmarkdown, ggplot2 (>= 3.1.0), visNetwork (>= 2.0.5),
htmlwidgets (>= 1.3), datasets
knitr, janitor (>= 2.1.0), testthat (>= 3.0.0), rmarkdown,
markdown
knitr, janitor (>= 2.1.0), testthat (>= 3.0.0), rmarkdown,
markdown, covr
knitr, RUnit, rjags, gWidgetstcltk, nlme, coda
knitr, RUnit, rjags, gWidgetstcltk, nlme
knitr, RUnit, rjags, gWidgetstcltk, nlme, R.rsp
cowplot, dplyr, DT, ggplotify, grDevices, maps, magick,
shiny, shinyBS, shinydashboard, shinycssloaders, remotes,
utils, plotly, prettydoc, knitr, rmarkdown, reshape2, ggrepel,
shadowtext, tidyr
DDD, ggplot2, Hmisc, knitr, microbenchmark, plyr, reshape2,
rmarkdown, TESS, testit, testthat, TreeSim
DDD, ggplot2, Hmisc, knitr, microbenchmark, plyr, reshape2,
rmarkdown, TESS, testthat, TreeSim
DDD, ggplot2, Hmisc, knitr, lintr, microbenchmark, plyr,
reshape2, rmarkdown, TESS, testthat (>= 2.1.0), TreeSim, DAISIE
TreeSim, DDD, ggplot2, Hmisc, knitr, lintr, microbenchmark,
plyr, reshape2, rmarkdown, TESS, testthat, DAISIE
devtools, httr, jsonlite, magrittr, testthat, ISOcodes, xml2,
rmarkdown, roxygen2, rvest
testthat, covr, readxl, knitr, rmarkdown
covr, knitr, readxl, rmarkdown, testthat
covr, here, knitr, readxl, rmarkdown, sp (>= 1.4.2),
testthat, usethis
testthat, data.table, re2r, knitr, rmarkdown
testthat, data.table, re2r, knitr, rmarkdown, rex, dplyr,
tidyr
testthat, data.table, re2r, knitr, rmarkdown, rex, dplyr,
tidyr, rematch2
testthat (>= 3.0.0), knitr, withr, rmarkdown
knitr, rcrossref, rmarkdown, testthat (>= 3.0.0), withr
knitr, rmarkdown, covr, testthat, tidyverse, abind
knitr, rmarkdown, covr, testthat, abind, clipr, ore (>=
1.4.0), styler, tidyr, mgcv, gridExtra, pacman, matrixStats,
spelling
knitr, rmarkdown, covr, testthat (>= 2.1.0), abind, tidyr,
gridExtra, pacman, matrixStats, spelling
knitr, rmarkdown, covr, testthat (>= 2.1.0), abind, tidyr,
gridExtra, pacman, matrixStats (>= 0.50.0), spelling
abind, covr, gridExtra, knitr, matrixStats (>= 0.50.0),
pacman, rmarkdown, spelling, testthat (>= 2.1.0), tidyr
abind, covr, gridExtra, knitr, matrixStats (>= 0.50), pacman,
rmarkdown, spelling, testthat (>= 2.1), tidyr
knitr, rmarkdown, testthat, rpart, rpart.plot, covr,
gridExtra, wakefield, vdiffr, here, simputation, imputeTS
knitr, rmarkdown, testthat, rpart, rpart.plot, covr,
gridExtra, wakefield, vdiffr, here, simputation, imputeTS,
UpSetR, gdtools
knitr, rmarkdown, testthat, rpart, rpart.plot, covr,
gridExtra, wakefield, vdiffr, here, simputation, imputeTS,
gdtools, Hmisc
knitr, rmarkdown, testthat, rpart, rpart.plot, covr,
gridExtra, wakefield, vdiffr, here, simputation, imputeTS,
gdtools, Hmisc, spelling
knitr, rmarkdown, testthat (>= 2.1.0), rpart, rpart.plot,
covr, gridExtra, wakefield, vdiffr, here, simputation,
imputeTS, gdtools, Hmisc, spelling
testthat, Seurat, limma, GGally, ggplot2
covr, epiR, ggplot2, knitr, pander, rmarkdown, stringr,
testthat, tidyr
brio, callr, devtools, forcats, knitr, readr, rlang,
rmarkdown, spelling, testthat (>= 3.0.4), tibble, tools, withr
covr, ggplot2, knitr, raster, rmarkdown, testthat, vcr
covr, ggplot2, knitr, pkgdown, raster, rmarkdown, testthat,
vcr
covr, ggplot2, knitr, pkgdown, raster, rmarkdown, testthat
covr, ggplot2, knitr, pkgdown, purrr, raster, rmarkdown,
rnaturalearth, sf, testthat
apsimx, ggplot2, knitr, purrr, terra, rmarkdown,
rnaturalearth, sf, testthat, vcr
apsimx, ggplot2, knitr, purrr, terra, rmarkdown,
rnaturalearth, sf, testthat
knitr, purrr, ratelimitr, rmarkdown, spelling, testthat, vcr
Rvcg (>= 0.17), testthat, httr, XML, knitr, rmarkdown, MASS,
alphashape3d
Rvcg (>= 0.17), testthat, httr, XML, knitr, rmarkdown,
markdown, MASS, alphashape3d, webshot2
Rvcg, testthat, httr, XML, knitr, rmarkdown, MASS
Rvcg, testthat, httr, XML, knitr, rmarkdown, MASS,
alphashape3d
bigmemory, ff, testthat, knitr, rglwidget
spelling, bigmemory, ff, testthat, knitr, rmarkdown
spelling, git2r (>= 0.22.1), nabor, testthat (>= 2.1.0), covr
testthat (>= 2.1.0), knitr, mockery, rstudioapi
testthat (>= 2.1.0), knitr, mockery, rstudioapi, covr
testthat (>= 2.1.0), knitr, mockery, rstudioapi, covr,
spelling
roxygen2 (>= 5.0.1), testthat, covr, ggplot2, maps, mapproj
testthat, knitr, ggplot2, maps, mapproj, vcr
knitr, rmarkdown, markdown, testthat (>= 3.0.0), DT, stringr,
covr, gurobi
knitr, rmarkdown, testthat, tm, rgeos, rgdal, rnaturalearth,
lwgeom, shinyLP, maptools
ggplot2, Hmisc, igraph, knitr, pheatmap, RColorBrewer,
rmarkdown, testthat
bookdown, knitr, rmarkdown, shiny, testthat
testthat, re2r, stringi, ggplot2, tidyr (>= 1.0.0), cdata,
dplyr, reshape2, knitr
testthat, re2r, stringi, ggplot2, tidyr (>= 1.0.0), cdata,
dplyr, reshape2, knitr, R.utils
testthat, re2r, stringi, ggplot2, tidyr (>= 1.0.0), cdata,
reshape2, knitr, R.utils
testthat, re2r, stringi, ggplot2, tidyr (>= 1.0.0), cdata,
reshape2, knitr, markdown, R.utils
testthat, knitr, rmarkdown, pkgdown, tidyverse, sp, geoknife,
ncdf4, jsonlite
testthat, knitr, rmarkdown, pkgdown, sp, geoknife, ncdf4,
jsonlite
testthat, knitr, rmarkdown, pkgdown, geoknife, ncdf4,
jsonlite, areal
ashr, knitr, parallel, rmarkdown, survival, tinytest
ggplot2, testthat, tigris, R.rsp, sf, spelling
ggplot2, testthat, tigris, R.rsp, spelling
ggplot2, testthat, tigris, R.rsp, spelling, usethis
tergm (>= 3.1), tsna, testthat, knitr, htmlwidgets,
scatterplot3d
tergm (>= 3.6), tsna, testthat, knitr, htmlwidgets,
scatterplot3d
tergm (>= 3.6), ergm, tsna, testthat, knitr, htmlwidgets,
scatterplot3d
tergm (>= 3.1), tsna,testthat, knitr, htmlwidgets,
scatterplot3d
knitr, pscl, MASS, AER, lmtest, mlogit, modelsummary,
bookdown, ggplot2
rhdf5, raster, R.utils, sp, testthat, magrittr
testthat, covr, xml2, spelling, rstudioapi
testthat, covr, xml2, spelling, rstudioapi, neonUtilities,
rhdf5
testthat, covr, xml2, spelling, rstudioapi, neonUtilities,
rhdf5, curl, openssl, digest
tibble, jsonlite, testthat, covr, xml2, spelling, rstudioapi,
neonUtilities, rhdf5, curl, openssl, digest
broom, covr, glmnet, hardhat, knitr, rmarkdown, roxygen2,
testthat (>= 3.0.0), tidyselect, tune, utils, withr, workflows
BiocStyle, ggplot2, igraph, knitr, rmarkdown, roxygen2,
testthat (>= 3.0.0)
knitr, rmarkdown, lavaan, shiny, htmltools
testthat, knitr, ape, RSiena, igraph, survival
covr, testthat, knitr, ape, RSiena, survival
covr, testthat, knitr, rmarkdown, ape, RSiena, survival
Matrix, igraph, relevent, statnet, statnet.common
colorspace, rgl, hasseDiagram (>= 0.1.3), grid
colorspace, rgl, hasseDiagram (>= 0.1.3), grid, mvtnorm,
gridExtra, igraph (>= 1.0.1)
colorspace, rgl, hasseDiagram (>= 0.1.3), grid, mvtnorm,
gridExtra, igraph (>= 1.0.1), tictoc
colorspace, rgl, hasseDiagram (>= 0.1.3), grid, mvtnorm,
gridExtra, igraph (>= 1.0.1), tictoc, writexl
knitr, rmarkdown, markdown, igraphdata, intergraph, ggraph,
gridGraphics, ggplot2, gridExtra, gridBase, magrittr
knitr, rmarkdown, magrittr, ggplot2, testthat, shiny (>=
0.13), miniUI (>= 0.1.1), rstudioapi (>= 0.5)
knitr, rmarkdown, magrittr, testthat, shiny (>= 0.13), miniUI
(>= 0.1.1), rstudioapi (>= 0.5)
testthat (>= 2.1.0), knitr, rmarkdown, scales
testthat, knitr, rmarkdown, igraph, ggplot2, dplyr, tidyr,
tibble, mixtools, EnvStats, purrr, RSpectra
knitr, rmarkdown, testthat (>= 2.1.0), covr, spelling
testthat, ggplot2, knitr, rmarkdown, dplyr, reshape2, httr
testthat, ggplot2, knitr, rmarkdown, dplyr, reshape2, httr,
covr
testthat, ggplot2, knitr, rmarkdown, dplyr, reshape2, httr,
covr, brainR
rmarkdown, ANTsR, ANTsRCore, ITKR, extrantsr, MNITemplate,
RAVEL, neurodata
rmarkdown, ANTsR, ITKR, extrantsr, MNITemplate, RAVEL,
neurodata
knitr, rmarkdown, covr, testthat, neurobase
dplyr, knitr, magrittr, rmarkdown, robotstxt, rvest, stringr,
testthat, tidytext
dplyr, knitr, magrittr, rmarkdown, robotstxt, rvest, stringr,
testthat, mockery, tidytext, textdata
future, gt, rmarkdown, tictoc, tidyverse, testthat (>= 2.0.0)
DBI, furrr, future, rmarkdown, RSQLite, testthat
crayon (>= 1.3.4), DBI, DT, gsisdecoder, httr, jsonlite,
purrr (>= 0.3.0), qs (>= 0.23.5), rmarkdown, RSQLite, testthat
crayon (>= 1.3.4), DBI, DT, gsisdecoder, httr, jsonlite,
purrr (>= 0.3.0), qs (>= 0.25.1), rmarkdown, RSQLite, testthat
crayon (>= 1.3.4), DBI, DT, gsisdecoder, httr, jsonlite,
lifecycle (>= 0.2.0), nflseedR (>= 1.0.2), purrr (>= 0.3.0), qs
(>= 0.25.1), rmarkdown, RSQLite, testthat
knitr, rmarkdown, testthat (>= 3.0.0), tidyverse
gt, knitr, rmarkdown, scales, testthat (>= 3.0.0), tidyverse
knitr, rmarkdown, wikilake, sp, rgeos, testthat, covr, RCurl
knitr, rmarkdown, wikilake, sp, rgeos, testthat (>= 2.1.0),
covr, crul
knitr, rmarkdown, wikilake, sp, rgeos, testthat (>= 2.1.0),
covr, crul, lwgeom, s2
testthat, knitr, rmarkdown, rosm, prettymapr, ggmap, ggplot2,
sp, lwgeom, devtools, codetools
testthat, knitr, rmarkdown, ggmap, ggplot2, sp, lwgeom,
devtools, codetools
testthat, knitr, rmarkdown, ggmap, ggplot2, sp, lwgeom,
devtools, codetools, data.table
testthat, knitr, rmarkdown, markdown, ggmap, ggplot2, sp,
lwgeom, devtools, codetools, data.table, parallel
testthat, knitr, rmarkdown, markdown, ggmap, ggplot2, sp,
lwgeom, devtools, codetools, data.table, parallel, s2
testthat, knitr, rmarkdown, markdown, ggmap, ggplot2, sp,
lwgeom, devtools, codetools, data.table, parallel, s2, gifski
testthat, knitr, rmarkdown, markdown, ggmap, ggplot2, sp,
lwgeom, devtools, codetools, data.table, parallel, s2, gifski,
leaflet
knitr, roxygen2, testthat, tibble, stringr
knitr, rmarkdown, testthat (>= 3.0.0), coda, basicMCMCplots
testthat, knitr, rmarkdown, tufte, spelling
knitr, rmarkdown, dplyr, magrittr, skimr, sf, maps, R.rsp
testthat, knitr, rmarkdown, sf, shiny, leaflet
rmarkdown, MASS, survival, testthat (>= 3.0.0)
reshape, WWGbook, lattice, ellipse, roxygen2, testthat
knitr, rmarkdown, dplyr, data.table, lbfgsb3, testthat,
madness, devtools, expm, matrixcalc, reshape2
knitr, rmarkdown, dplyr, data.table, lbfgsb3, testthat,
madness, devtools, expm, matrixcalc, reshape2, nloptr, ucminf
knitr, rmarkdown, dplyr, data.table, lbfgsb3c, testthat,
madness, devtools, expm, matrixcalc, reshape2, nloptr, ucminf,
Rvmmin, broom.mixed, dotwhisker, officer, pkgdown, gridExtra,
xpose,
knitr, rmarkdown, dplyr, data.table, lbfgsb3c, testthat,
madness, devtools, expm, matrixcalc, reshape2, nloptr, ucminf,
Rvmmin, broom.mixed, dotwhisker, officer, pkgdown, gridExtra,
xpose, drake (>= 7.5.2)
knitr, rmarkdown, dplyr, data.table, lbfgsb3c, testthat,
madness, devtools, expm, matrixcalc, reshape2, nloptr, ucminf,
Rvmmin, broom.mixed, dotwhisker, officer, pkgdown, gridExtra,
xpose, lotri, rex, minqa, lattice, digest, sys, crayon, lbfgs,
dparser
knitr, rmarkdown, dplyr, tibble, data.table, lbfgsb3c,
testthat, madness, devtools, expm, matrixcalc, reshape2,
nloptr, ucminf, Rvmmin, broom.mixed, dotwhisker, officer,
pkgdown, gridExtra, xpose, lotri, rex, minqa, lattice, digest,
sys, crayon, lbfgs, dparser, vpc (>= 1.0.0), huxtable
Deriv, Rvmmin, broom.mixed, crayon, knitr, data.table,
devtools, digest, dotwhisker, dplyr, expm, flextable, ggtext,
patchwork, gridExtra, huxtable, lattice, lbfgs, lotri, madness,
matrixcalc, nloptr, officer, pkgdown, reshape2, rmarkdown,
testthat, tidyr, ucminf, vpc (>= 1.0.0), xgxr, yaml, xpose,
generics, tibble, checkmate, cli, qs, covr, forecast,
latticeExtra
Deriv, Rvmmin, broom.mixed, crayon, knitr, data.table,
devtools, digest, dotwhisker, dplyr, expm, flextable, ggtext,
patchwork, gridExtra, huxtable, lattice, lbfgs, lotri, madness,
matrixcalc, nloptr, officer, pkgdown, reshape2, rmarkdown,
testthat, tidyr, ucminf, vpc (>= 1.1.0), xgxr, yaml, xpose,
generics, tibble, checkmate, cli, qs, covr, forecast,
latticeExtra
rmarkdown, knitr, devtools, withr, ggplot2, testthat
rmarkdown, knitr, devtools, ggplot2, testthat, n1qn1, withr
Rvmmin, broom.mixed, crayon, knitr, data.table, devtools,
digest, dplyr, lotri, nloptr, pkgdown, rmarkdown, testthat,
ucminf, generics, tibble, checkmate, cli, qs, covr, vpc, withr,
xgxr
broom.mixed, crayon, data.table, devtools, digest, dparser
(>= 0.1.8), dplyr, generics, nloptr, qs, sys, testthat, tibble,
withr, xgxr
broom.mixed, crayon, data.table, devtools, digest, dparser
(>= 0.1.8), dplyr, generics, nloptr, qs, sys, testthat, tibble,
withr, xgxr, sfsmisc, rxode2parse, rxode2random
broom.mixed, crayon, data.table, devtools, digest, dparser
(>= 0.1.8), dplyr, generics, nloptr, qs, sys, testthat, tibble,
withr, xgxr, sfsmisc, rxode2parse (>= 2.0.11), rxode2random (>=
2.0.9)
broom.mixed, crayon, data.table, devtools, digest, dplyr,
generics, nloptr, qs, sys, testthat, tibble, withr, xgxr,
sfsmisc, rxode2parse (>= 2.0.11), rxode2random (>= 2.0.9)
brms, nlmixr2data, testthat (>= 3.0.0), withr, dplyr
brms, nlmixr2data, testthat (>= 3.0.0), withr, dplyr,
devtools
testthat (>= 3.0.0), dplyr, withr, nlmixr2data
minpack.lm, optimx, Rvmmin, Rcgmin, numDeriv
testthat (>= 0.8.1), knitr, rmarkdown, inline (>= 0.3.14)
knitr, rmarkdown, xml2, testthat (>= 3.0.0), covr
knitr, rmarkdown, testthat, prettydoc, randomForest, ranger,
xgboost, glmnet,
bbmle, emmeans, ggplot2, HydroMe, lattice, minpack.lm,
nlstools, nls2, segmented
bbmle, car, emmeans, ggplot2, HydroMe, lattice, minpack.lm,
NISTnls, nlstools, nls2, segmented
bbmle, car, emmeans, ggplot2, HydroMe, lattice, minpack.lm,
NISTnls, nlstools, nls2, parallel, segmented
bbmle, car, emmeans, ggplot2, HydroMe, lattice, minpack.lm,
NISTnls, nlstools, nls2, parallel, rmarkdown, segmented
bbmle, car, emmeans, ggplot2, lattice, minpack.lm, NISTnls,
nlstools, nls2, parallel, rmarkdown, segmented
minpack.lm, optimr, Rvmmin, Rcgmin, numDeriv, knitr,
rmarkdown, Ryacas, Deriv
minpack.lm, optimr, Rvmmin, Rcgmin, numDeriv, knitr,
rmarkdown, Ryacas, Deriv, nlmrt
minpack.lm, optimx, Rvmmin, Rcgmin, numDeriv, knitr,
rmarkdown, Ryacas, Deriv
minpack.lm, optimx, numDeriv, knitr, rmarkdown, markdown,
Ryacas, Deriv
minpack.lm, optimx, numDeriv, knitr, rmarkdown, markdown,
Ryacas, Deriv, microbenchmark, MASS, ggplot2, nlraa
rmarkdown, knitr, future, future.batchtools, survival
DBI, RPostgreSQL, knitr, rmarkdown, testthat
DBI, RPostgreSQL, stars, knitr, rmarkdown, testthat
DBI, RPostgreSQL, stars, knitr, rmarkdown, tinytest
dplyr, knitr, rmarkdown, ggplot2, ggridges, tidyr, forcats
dplyr, knitr, rmarkdown, ggplot2, ggridges, tidyr, forcats,
mlr, mlrCPO
testthat, covr, knitr, rmarkdown, dplyr, httptest, ggplot2,
maps, mapdata
hurricaneexposuredata (>= 0.1.0), knitr (>= 1.29.0), pander
(>= 0.6.3), rmarkdown (>= 2.3), testthat (>= 2.3.2)
arrow, bit64, dplyr (>= 0.7.0), dbplyr, readr, testthat,
tibble, vroom (>= 1.2.0), covr, knitr, rmarkdown, jsonlite
arrow, bit64, dplyr (>= 0.7.0), dbplyr, readr, testthat,
vroom (>= 1.2.0)
arrow, bit64, dplyr (>= 0.7.0), dbplyr, readr, testthat,
vroom (>= 1.2.0), covr, knitr, rmarkdown, jsonlite
arrow, bit64, dplyr (>= 0.8.0), dbplyr (>= 1.4.3), readr,
testthat, tibble, vroom (>= 1.2.0), covr, knitr, rmarkdown,
jsonlite
arrow, bit64, dplyr (>= 0.8.0), dbplyr (>= 1.4.3), readr,
testthat, tibble, vroom (>= 1.2.0), covr, knitr, rmarkdown,
jsonify, jsonlite
sofa (>= 0.3.0), etseed (>= 0.1.0), elastic (>= 0.8.4),
mongolite (>= 1.6), redux, testthat
sofa (>= 0.3.0), etseed (>= 0.1.0), elastic (>= 1.0.0),
mongolite (>= 1.6), redux, testthat
sofa (>= 0.3.0), elastic (>= 1.0.0), mongolite (>= 1.6),
redux, RSQLite (>= 1.1), DBI, testthat
sofa (>= 0.3.0), elastic (>= 1.0.0), mongolite (>= 1.6),
redux, RSQLite (>= 2.2.4), DBI, testthat
sofa (>= 0.3.0), elastic (>= 1.0.0), mongolite (>= 1.6),
RSQLite (>= 2.2.4), duckdb (>= 0.6.0), RPostgres, testthat,
withr
sofa (>= 0.3.0), elastic (>= 1.0.0), mongolite (>= 1.6),
RSQLite (>= 2.2.4), duckdb (>= 0.6.0), RPostgres, testthat,
withr, callr
phytools, testthat, TreeSim, dplyr, knitr, rmarkdown,
ggplot2, magrittr, tidyr
testthat, TreeSim, dplyr, knitr, rmarkdown, ggplot2,
magrittr, tidyr
testthat, TreeSim, dplyr, knitr, rmarkdown, ggplot2,
magrittr, tidyr, nLTT, RPANDA
RColorBrewer, parallel, testthat, fields, colorspace
ggplot2 (>= 3.0.0), knitr, osmdata, rmarkdown, testthat (>=
3.0.0), tidygeocoder
knitr, rmarkdown, testthat, purrr, tidyr, magrittr
knitr, rmarkdown, testthat, purrr, tidyr, magrittr, ggplot2,
scales
knitr, rmarkdown, testthat, purrr, tidyr, magrittr, ggplot2,
scales, treemapify
knitr, rmarkdown, testthat, purrr, tidyr, magrittr, ggplot2,
scales, readr
V8, knitr, rmarkdown, testthat, shinytest, covr, spelling
ReporteRs, pander, knitr, wrangle, rmarkdown
mirt (>= 1.26.3), AER, MASS, faraway, mlogit, ordinal, pscl,
knitr, testthat
mirt (>= 1.26.3), AER, MASS, faraway, mlogit, ordinal, pscl,
knitr, rmarkdown, testthat
testthat (>= 3.0.0), pkgdown, knitr, rmarkdown
testthat (>= 3.0.0), pkgdown, vcr, knitr, rmarkdown
testthat (>= 3.0.0), pkgdown, vcr (>= 0.6.0), knitr,
rmarkdown
testthat (>= 2.1.0), knitr, rmarkdown, igraph, tidyverse,
ggplot2, ggnetwork, intergraph, viridis, gganimate, gifski,
png, ape (>= 5.3), tidytree (>= 0.2.4), treeio (>= 1.6.2),
ggtree (>= 1.16.0)
testthat (>= 2.1.0), knitr, rmarkdown, igraph, tidyverse,
ggplot2, ggnetwork, intergraph, viridis, gifski, png,
gganimate, ape (>= 5.3), tidytree (>= 0.2.4), treeio (>=
1.6.2), ggtree (>= 1.16.0)
testthat (>= 2.1.0), knitr, rmarkdown, igraph, tidyverse,
ggplot2, ggnetwork, intergraph, viridis, gifski, png,
gganimate, ape (>= 5.3), tidytree (>= 0.3.3), treeio (>=
1.10.0), ggtree (>= 2.0.2)
testthat (>= 2.1.0), knitr, rmarkdown, igraph, tidyverse,
ggplot2, ggnetwork, intergraph, viridis, gifski, png,
gganimate, ape (>= 5.3), tidytree (>= 0.3.3), treeio (>=
1.10.0), ggtree (>= 2.0.2), magrittr (>= 1.5), dplyr (>= 0.8.0)
testthat (>= 2.1.0), knitr, rmarkdown, igraph, tidyverse,
ggplot2, ggnetwork, intergraph, viridis, gifski, png,
gganimate, ape (>= 5.3), tidytree (>= 0.3.3), treeio (>=
1.14.0), ggtree (>= 2.4.0), magrittr (>= 1.5), dplyr (>=
0.8.0), covr
knitr, shiny, shinycssloaders, formatR, styler, rmarkdown
knitr, rmarkdown, testthat (>= 3.0.0), dplyr, cowplot,
survminer
covr, httptest, knitr, mockery, rmarkdown, spelling, testthat
(>= 2.1.0)
gapminder, knitr, readr, rmarkdown, stringr, testthat (>=
3.0.0), tibble, tidyr
MASS, forward, gamlss, nlme, lattice, tweedie
covr, dplyr, ggplot2, grid, kableExtra, knitr, pkgdown, png,
rmarkdown, roxygen2 (>= 7.0.0), testthat
covr, dplyr, ggplot2, grid, kableExtra, knitr, markdown,
pkgdown, png, rmarkdown, roxygen2 (>= 7.0.0), shinyBS,
shinyWidgets, testthat
CCA, glmnet, MASS, PMA, roxygen2, testthat (>= 0.8)
CCA, glmnet, MASS, PMA, testthat (>= 0.8), roxygen2
dplyr, DT, shinyBS, shinycssloaders, shinythemes
covr, DT, httptest, shiny, shinyBS, shinycssloaders,
shinythemes, testthat (>= 2.1.0)
rmarkdown, testthat (>= 3.0.0), knitr, reshape2
covr, DT, knitr, rmarkdown, testthat, xml2, rvest
covr, DT, knitr, rmarkdown, testthat, xml2, rvest, readr
igraph, knitr, numDeriv, rmarkdown, spelling, testthat (>=
3.0.0)
ggrastr, ggrepel, knitr, matrixStats, testthat (>= 3.0.0),
rmarkdown, knitr, testthat (>= 3.0.0), ggplot2
MASS, RSQLite, arules, lattice, survival
testthat, knitr, rmarkdown, geosphere, png, knitcitations,
covr, spelling
bookdown, covr, geosphere, knitr, png, rmarkdown, spelling,
testthat
knitr, RColorBrewer, lattice, qrmdata, QRM, xts
knitr, RColorBrewer, lattice, qrmdata, xts
RColorBrewer, lattice, qrmdata, xts, knitr, rmarkdown
dbplyr, testthat, knitr, lubridate, leaflet, rmarkdown,
RSQLite
testthat, dplyr, tidyr, knitr, rmarkdown, ggplot2, scales,
ggthemes, GGally
testthat, dplyr, tidyr, knitr, rmarkdown, ggplot2, scales,
ggthemes, GGally, maps, mapproj, forcats
devtools, knitr, rmarkdown, roxygen2, testthat (>= 2.1.0)
testthat, tigris, sf, knitr, socialmixr, rmarkdown
roxygen2 (>= 5.0.1), DBI, knitr, RSQLite, testthat, covr
roxygen2 (>= 6.1.1), DBI, knitr, RSQLite, testthat
DBI, knitr, RSQLite, testthat, markdown, covr
datasets, dplyr, ggplot2, knitr, rmarkdown, testthat (>=
3.0.0), vdiffr
rmarkdown, RColorBrewer, viridis, remotes, RefManageR
rmarkdown, RColorBrewer, viridis, remotes, RefManageR,
testthat
rmarkdown, remotes, RefManageR, testthat, covr, ape, knitr
rmarkdown, remotes, RefManageR, testthat, covr, ape, bit64,
knitr
GNRS, testthat, knitr, rmarkdown, rworldmap, cleangeo,
geosphere, originr, parallelsugar, assertthat
ocedata, foreign, mapproj, ncdf4, tiff, akima, proj4,
RSQLite, DBI
ocedata, foreign, mapproj, ncdf4, tiff, akima, RSQLite, DBI,
rgdal, R.utils, testthat, knitr
ocedata, foreign, ncdf4, tiff, akima, RSQLite, DBI, rgdal (>=
1.1-9), R.utils, testthat, knitr
ocedata, foreign, ncdf4, tiff, akima, RSQLite, DBI, rgdal (>=
1.1-9), R.utils, testthat, knitr, marmap, lubridate
ocedata, foreign, ncdf4, tiff, akima, RSQLite, DBI, rgdal (>=
1.1-9), R.utils, knitr, rmarkdown, marmap, lubridate
akima, automap, DBI, foreign, knitr, lubridate, marmap,
ncdf4, ocedata, rgdal (>= 1.4.3), rmarkdown, RSQLite, R.utils,
sp, tiff
akima, automap, DBI, foreign, knitr, lubridate, ncdf4,
ocedata, raster (>= 1.4.3), rgeos, rgdal, rmarkdown, RSQLite,
R.utils, sf, sp, tiff, XML
akima, automap, DBI, foreign, knitr, lubridate, ncdf4,
ocedata, raster (>= 1.4.3), rgeos, rmarkdown, RSQLite, R.utils,
sp, tiff, XML
akima, automap, DBI, foreign, knitr, lubridate, marmap,
ncdf4, ocedata, raster (>= 1.4.3), rgeos, rmarkdown, RSQLite,
R.utils, sp, tiff, XML
akima, automap, DBI, foreign, knitr, lubridate, marmap,
ncdf4, ocedata, raster (>= 1.4.3), rgeos, rmarkdown, RSQLite,
R.utils, sf, sp, testthat (>= 3.0.0), tiff, XML
automap, DBI, foreign, interp, knitr, lubridate, marmap,
ncdf4, ocedata, raster (>= 1.4.3), rgeos, rmarkdown, RSQLite,
R.utils, sf, sp, testthat (>= 3.0.0), tiff, XML
cffr, covr, curl, devtools (>= 2.4.3), diffviewer (>= 0.1.1),
globals (>= 0.14.0), knitr, rmarkdown, roxygen2, shinytest (>=
1.5.1), spelling, testthat (>= 3.1.2), tibble, vdiffr (>=
1.0.2)
scales, oce, knitr, rmarkdown, testthat (>= 2.1.0)
sf, knitr, rmarkdown, tinytest, covr, lwgeom
tibble, DBItest, testthat, covr, magrittr
covr, DBItest, magrittr, RSQLite, testthat, tibble
crayon (>= 1.3.4), curl, DBI, ggplot2, ggrepel, gt, knitr,
progressr (>= 0.6.0), purrr (>= 0.3.0), qs (>= 0.25.1), Rcpp
(>= 1.0.7), RcppParallel (>= 5.1.4), rmarkdown, RSQLite, stats,
stringi, stringr (>= 1.3.0), testthat, tibble (>= 3.0), usethis
(>= 1.6.0), xml2 (>= 1.3)
knitr, rmarkdown, nlme, grid, gtable, scales
knitr, rmarkdown, nlme, grid, gtable, scales, testthat,
packagedocs
knitr, rmarkdown, grid, gtable, scales, testthat, pacman, gam
cowplot, gam, grid, gtable, knitr, MASS, rmarkdown, scales,
testthat
dde (>= 1.0.0), jsonvalidate (>= 1.1.0), knitr, rmarkdown,
testthat
dde (>= 1.0.0), jsonvalidate (>= 1.1.0), knitr, mockery,
pkgbuild, pkgload, rlang, rmarkdown, testthat
knitr, rmarkdown, testthat (>= 3.0.0), mockery, digest
ggplot2, flextable (>= 0.6.10), bookdown (>= 0.13)
ggplot2, flextable (>= 0.7.0), bookdown (>= 0.13)
testthat, ionicons, devEMF, knitr,htmltools, rmarkdown
testthat, ionicons, devEMF, knitr,htmltools, rmarkdown, tidyr
testthat, ionicons, devEMF, knitr, rmarkdown, tidyr
testthat, devEMF, knitr, rmarkdown, tidyr
testthat, devEMF,tibble,ggplot2, rmarkdown, knitr, rsvg
testthat, devEMF,tibble,ggplot2, rmarkdown, base64enc, knitr,
rsvg
testthat, devEMF, ggplot2, rmarkdown, base64enc, knitr, rsvg
rlang, tidyr, forcats, microbenchmark, testthat, numDeriv,
ggplot2, scales, knitr
caret, covr, descriptr, grid, haven, jsonlite, knitr,
lubridate, readr, readxl, rmarkdown, scales, shinyBS,
shinythemes, testthat, tools, vdiffr
covr, descriptr, knitr, rmarkdown, testthat, vdiffr, xplorerr
knitr, knitrdata, markdown, rmarkdown, testthat
qtl (>= 1.36-6), knitr (>= 1.10), rmarkdown, htmlwidgets,
vcfR (>= 1.6.0),
knitr (>= 1.10), rmarkdown, testthat, stringr
knitr, rmarkdown, sf, rgdal, sp, googlePolylines
callr, covr, devtools, mockr, rlang, testthat (>= 2.1.0),
withr
knitr, rmarkdown, R.rsp, testthat (>= 3.0.0), data.table,
plotly
knitr, rmarkdown, R.rsp, testthat (>= 2.1.0), data.table,
plotly
testthat (>= 3.0.0), data.table, vroom, curl
testthat (>= 2.1.0), BTM, topicmodels, keyATM (>= 0.2.2),
covr, stringr, knitr, rmarkdown
testthat (>= 2.1.0), topicmodels, covr, stringr, knitr,
rmarkdown
testthat (>= 3.0.2), BTM, topicmodels, stm, seededlda, covr,
stringr, knitr, rmarkdown, fs, quanteda.textmodels, shinytest
testthat (>= 3.0.2), text2vec (>= 0.6), BTM, dplyr,
topicmodels, stm, seededlda, covr, stringr, knitr, rmarkdown,
fs, quanteda.textmodels, shinytest
knitr, rmarkdown, xtable, testthat (>= 3.0.0), covr
e1071, knitr, knitrBootstrap, rmarkdown, tibble, testthat
knitr, rmarkdown, testthat, dplyr, ggplot2, directlabels,
data.table, covr, neuroblastoma, microbenchmark, changepoint,
Segmentor3IsBack, fpop
knitr, RMark, rgdal, R2ucare, rmarkdown, testthat
knitr, RMark, rmarkdown, testthat, R2ucare
knitr, BiocStyle, RUnit, BiocGenerics, rmarkdown
knitr, BiocStyle, RUnit, BiocGenerics, rmarkdown, markdown
roxygen2 (>= 5.0.1), testthat, leaflet, covr
latticeExtra, hexbin, RgoogleMaps, ellipse, maps
latticeExtra, hexbin, RgoogleMaps, png, maps
latticeExtra, hexbin, RgoogleMaps, png, mapdata
hexbin, RgoogleMaps, png, mapdata, KernSmooth
testthat (>= 3.0.0), dplyr, knitr, rmarkdown, tidyr, purrr,
ggplot2
RAppArmor, sendmailR, RProtoBuf (>= 0.4)
RAppArmor, sendmailR, RProtoBuf (>= 0.4.2), pander
RAppArmor, sendmailR, RProtoBuf (>= 0.4.2), pander, R.rsp
RAppArmor, feather, sendmailR, pander, R.rsp
unix (>= 1.3), haven, feather, pander, R.rsp
unix (>= 1.3), feather, sendmailR, R.rsp
unix (>= 1.4), haven, feather, pander, R.rsp
unix (>= 1.4), haven, feather, pander, R.rsp, svglite
unix (>= 1.5.3), haven, feather, pander, R.rsp, svglite
arrow, unix (>= 1.5.3), haven, pander, R.rsp, svglite
lattice, ggplot2, quantmod, plyr, reshape2, ggplot2,
httpRequest, RCurl, RJSONIO, mgcv
cancensus, covr, dplyr, ggplot2, knitr, purrr, rmarkdown,
testthat
covr, dplyr, ggplot2, knitr, purrr, rmarkdown, testthat
covr, dplyr, ggiraph, ggplot2, knitr, purrr, tidyr,
rmarkdown, testthat
tibble, testthat, knitr, sf, geojsonsf, pkgdown, rmarkdown
tibble, testthat, knitr, stars, pkgdown, rmarkdown,
kableExtra, DT
tibble, testthat, knitr, stars, pkgdown, rmarkdown,
kableExtra, DT, terra
tibble, testthat, knitr, stars, pkgdown, rmarkdown,
kableExtra, DT, terra, magrittr
broom, dplyr, forcats, lubridate, tidyr, knitr
broom, dplyr, forcats, knitr, lubridate, scales, tidyr,
tidytext
broom, dplyr, forcats, knitr, lubridate, scales, testthat (>=
3.0.0), tidyr, tidytext
httr, plumber, shiny, testthat (>= 2.1.0)
maps, maptools, readr, tibble, rgeos, sf, knitr, rmarkdown,
lubridate, units, jsonlite, ggplot2, zoo, lintr, testthat, covr
maps, maptools, tibble, rgeos, sf, knitr, rmarkdown,
lubridate, units, jsonlite, ggplot2, zoo, lintr, testthat, covr
testthat, digest, knitr, rmarkdown, jsonlite
testthat, digest, knitr, rmarkdown, jsonlite, jose
testthat, digest, knitr, rmarkdown, jsonlite, jose, sodium
testthat (>= 2.1.0), digest, knitr, rmarkdown, jsonlite,
jose, sodium
curl, testthat (>= 2.1.0), digest, knitr, rmarkdown,
jsonlite, jose, sodium
RcppSimdJson (>= 0.1.2), covr, knitr, rmarkdown, testthat
RcppSimdJson (>= 0.1.2), covr, knitr, rmarkdown, testthat,
raster, rgdal, tibble
covr, ggplot2, knitr, rmarkdown, roxygen2, testthat (>=
3.0.0), waldo
testthat, splines, caret, mgcv, survival, knitr, gbm
quantreg, quadprog, RColorBrewer, testthat, splines, caret,
mgcv, survival, knitr, gbm, htmltools, rmarkdown
quantreg, quadprog, RColorBrewer, testthat, splines, caret,
mgcv, survival, knitr, gbm, htmltools
quantreg, quadprog, RColorBrewer, testthat, splines, caret,
mgcv, survival, knitr, gbm, rmarkdown, magrittr
knitr, rmarkdown, testthat, rvest, kableExtra
testthat, yaml (>= 2.1.3), multicore, optparse, gplots
optparse, gplots, opmdata (>= 0.4-0), testthat, multcomp
testthat, yaml (>= 2.1.3), multicore, optparse, gplots,
Ckmeans.1d.dp
yaml (>= 2.1.3), multicore, optparse, gplots, Ckmeans.1d.dp
yaml (>= 2.1.3), multicore, optparse, gplots, opmdata
multicore, optparse, gplots, opmdata (>= 0.4-0), testthat
optparse, gplots, opmdata (>= 0.4-0), testthat, multcomp,
KEGGREST, pathview, randomForest
optparse, gplots, opmdata (>= 0.4.0), testthat, multcomp,
KEGGREST, pathview, mboostDevel (>= 2.3.0), gridExtra
stats, survival, km.ci, knitr, rmarkdown
testthat (>= 3.0.0), mockery, markdown, tidyverse
testthat (>= 3.0.0), mockery, markdown, tidyverse, DT,
shinydashboard, shinyalert, plotly, hrbrthemes, shinyjs,
orthopolynom, magrittr
testthat, ggplot2, ggthemes, knitr, AUC, scales
testthat, grid, ggplot2, ggthemes, knitr, AUC, scales
testthat, grid, ggplot2, ggthemes, knitr, AUC, scales,
stringr, plyr
testthat, grid, ggplot2, ggthemes, knitr, AUC, scales,
stringr, plyr, XML
amap, dbscan, cowplot, fastICA, fpc, ggrepel, grid,
grDevices, gtable, knitr, parallel, plyr, reshape2, stats,
testthat, utils
testthat (>= 0.9.1), knitr (>= 1.9), rmarkdown
testthat, quantreg, mclust, knitr, rmarkdown
R.rsp, roxygen2, spam, microbenchmark, testthat, ggplot2,
numDeriv
R.rsp, roxygen2, spam, microbenchmark, testthat, ggplot2,
numDeriv, lbfgsb3, lbfgsb3c
R.rsp, roxygen2, spam, microbenchmark, testthat, ggplot2,
numDeriv, lbfgsb3c
knitr, rmarkdown, testthat (>= 3.0.0), pracma
knitr, rmarkdown, testthat (>= 3.0.0), pracma, R.utils
BB, ucminf, Rcgmin, Rvmmin, minqa, setRNG
BB, ucminf, Rcgmin, Rvmmin, minqa, setRNG, dfoptim, svUnit
knitr, rmarkdown, setRNG, BB, ucminf, minqa, dfoptim,
lbfgsb3, lbfgs, subplex
knitr, rmarkdown, setRNG, BB, ucminf, minqa, dfoptim,
lbfgsb3c, lbfgs, subplex
knitr, rmarkdown, markdown, setRNG, BB, ucminf, minqa,
dfoptim, lbfgsb3c, lbfgs, subplex
testthat (>= 3.0.0), knitr, rmarkdown, tidyverse, shiny,
shinydashboard
RItools, boot, biglm, testthat (>= 0.11.0), roxygen2, brglm,
arm, knitr, rmarkdown, markdown, pander, xtable, rrelaxiv
RItools, boot, biglm, survey, testthat (>= 0.11.0), roxygen2,
brglm, arm, knitr, rmarkdown, markdown, pander, xtable,
rrelaxiv
boot, RItools, biglm, testthat, survival
boot, RItools, biglm, testthat, survival, brglm, arm
boot, biglm, testthat (>= 0.11.0), roxygen2, brglm, arm,
knitr, rmarkdown, pander, xtable
boot, biglm, testthat (>= 0.11.0), roxygen2, brglm, arm,
knitr, rmarkdown, markdown, pander, xtable
covr, knitr (>= 1.15.19), stringr, testthat
BradleyTerry2, prefmod, psychotree, psychotools, psychomix
rmarkdown, knitr, ggplot2, modelsummary, marginaleffects,
haven, stringr
rmarkdown, knitr, ggplot2, modelsummary, marginaleffects,
haven, stringr, Hmisc
rmarkdown, knitr, modelsummary, marginaleffects, haven,
stringr, Hmisc, collapse
httr, jsonlite, knitr, mockery, processx, rmarkdown,
testthat, vaultr (>= 1.0.0)
httr, jsonlite, knitr, mockery, processx, rmarkdown,
testthat, vaultr (>= 1.0.4)
httr, jsonlite, knitr, markdown, mockery, processx,
rmarkdown, testthat, vaultr (>= 1.0.4)
lme4, nnet, xtable, testthat (>= 0.8), tools
testthat, MASS, glmnet, penalized, ordinalgmifs, nnet
testthat, MASS, glmnet (>= 2.0-1), penalized, ordinalgmifs,
nnet
knitr, Biobase, testthat (>= 3.0.0), rmarkdown
testthat, sessioninfo, gridExtra, MASS, mlpack, vegan,
heplots, knitr, rmarkdown
future.batchtools, testthat, class, rmarkdown, knitr,
forecast, randomForest
future.batchtools, testthat, class, rmarkdown, knitr,
stringr, forecast, randomForest
testthat, class, rmarkdown, knitr, stringr, forecast,
randomForest
testthat, class, rmarkdown, knitr, stringr, glmnet, forecast,
randomForest
data.table, dplyr, knitr, rmarkdown, testthat
data.table, dplyr, knitr, purrr, rmarkdown, testthat
XML, testthat, covr, knitr, rmarkdown, rticles
dplyr, logger, rprojroot, testthat, knitr, rmarkdown, lintr
(>= 2.0), covr, spelling
dplyr, logger, rprojroot, brio, testthat, knitr, rmarkdown,
lintr (>= 2.0), covr, spelling, vcr (>= 0.5)
askpass, covr, testthat (>= 3.0.0), withr
devtools, knitr, microbenchmark, rmarkdown, roxygen2, sf,
testthat
devtools, knitr, pkgdown, rmarkdown, roxygen2, sf, testthat
devtools, knitr, rmarkdown, roxygen2, sf, testthat
devtools, knitr, magrittr, rmarkdown, roxygen2, sf, testthat
devtools, knitr, pkgdown, raster, rmarkdown, roxygen2, sf,
testthat
httptest2, jsonlite, knitr, markdown, raster, rmarkdown, sf,
testthat
knitr, markdown, raster, rmarkdown, sf, testthat
testthat (>= 3.0.2), knitr, rmarkdown, covr
PrevMap, rmarkdown, markdown, leafem, viridisLite,raster,
knitr, testthat
knitr, roxygen2, rmarkdown, devtools, maptools, RColorBrewer
knitr, roxygen2, rmarkdown, devtools, maptools, RColorBrewer,
wesanderson
knitr, roxygen2, rmarkdown, devtools, maptools, testthat
knitr, magrittr, roxygen2, rmarkdown, devtools, testthat
curl, knitr, magrittr, rmarkdown, testthat
coda, microbenchmark, testthat, knitr, rmarkdown, igraph
coda, microbenchmark, testthat, knitr, rmarkdown, igraph,
epicontacts
coda, microbenchmark, testthat, knitr, rmarkdown, igraph,
epicontacts, adegenet
dplyr, forcats, ggplot2, knitr, testthat, tidyr, covr,
rmarkdown, spelling, stringr
knitr, rmarkdown, kableExtra, magrittr, dplyr
testthat (>= 2.1), knitr (>= 1.0), ape, rlang, ssh
countrycode, covr, devtools, knitr, magrittr, pkgdown,
rmarkdown, spelling, testthat, xtable
covr, devtools, knitr, pkgdown, rmarkdown, spelling, testthat
testthat (>= 3.0.0), utils, showtext, sysfonts
testthat (>= 3.0.0), utils, showtext, sysfonts, knitr,
rmarkdown, plm, texreg
caret, covr, glmnet, knitr, rmarkdown, SLOPE, spelling,
testthat (>= 2.1.0)
checkmate, dplyr, magrittr, knitr, rmarkdown, testthat, utils
knitr, testthat, rmarkdown, ggplot2, ggridges, methods
curl, covr, testthat, spelling, rvest, xml2, knitr, rmarkdown
testthat, covr, knitr, rmarkdown, magrittr, stringr,
RColorBrewer, ggplot2, DiagrammeR
testthat, covr, knitr, rmarkdown, rvest, stringr,
RColorBrewer, ggplot2, DiagrammeR, spelling
httptest, knitr, rmarkdown, testthat (>= 2.1.0)
covr, httptest, knitr, rmarkdown, testthat (>= 2.1.0)
paletteer (>= 0.2.1), testthat, covr, knitr, rmarkdown
knitr, rmarkdown, Hmisc, testthat (>= 2.1.0)
microbenchmark, tcltk, MASS, logcondens, doParallel, testthat
microbenchmark, tcltk, MASS, logcondens, doParallel,
testthat, vdiffr
microbenchmark, tcltk, MASS, logcondens, doParallel,
testthat, vdiffr, ggplot2
microbenchmark, tcltk, MASS, logcondens, doMC, doSNOW
microbenchmark, tcltk, MASS, logcondens, doParallel
bookdown, DiagrammeR, dplyr (>= 1.0.0), knitr, magrittr,
readr, rmarkdown, TITAN2, testthat (>= 3.0.0), tidyr
ISLR, foreign, dplyr, knitr, rmarkdown, covr, testthat
ISLR, foreign, knitr, rmarkdown, covr, testthat
cleanr, covr, digest, knitr, lintr, rmarkdown, roxygen2,
RUnit, spelling, testthat
cleanr, covr, devtools, digest, document, knitr, lintr,
rasciidoc (>= 3.0.1), rmarkdown, roxygen2, RUnit, stats,
spelling, testthat
cleanr, covr, devtools, digest, document, knitr, lintr,
rasciidoc (>= 3.0.1), rmarkdown, roxygen2, RUnit, stats,
spelling, testthat, usethis, withr
cleanr, covr, digest, knitr, lintr, rasciidoc, rmarkdown,
roxygen2, RUnit, spelling, testthat
cleanr, covr, devtools, digest, knitr, lintr, rasciidoc (>=
2.1.1), rmarkdown, roxygen2, RUnit, spelling, testthat
cleanr, covr, devtools, digest, knitr, lintr, rmarkdown,
roxygen2, RUnit, spelling, testthat
cleanr, covr, devtools, digest, knitr, lintr, rasciidoc,
rmarkdown, roxygen2, RUnit, spelling, testthat
cleanr, covr, devtools, digest, document, git2r, knitr,
lintr, rasciidoc, rmarkdown, roxygen2, RUnit, spelling,
testthat
ggiraph (>= 0.3.3), ggplot2, knitr, rmarkdown
ggiraph (>= 0.3.3), ggplot2, knitr, rmarkdown, lpSolve
ggiraph, ggplot2, knitr, rmarkdown, lpSolve
ggiraph (>= 0.8.4), ggplot2, knitr, rmarkdown, lpSolve
testthat (>= 0.7), devtools, httr, pkgKitten
testthat (>= 0.7), devtools, httr, knitr
testthat (>= 0.7), devtools, httr, pkgKitten, knitr
testthat (>= 0.7), devtools, httr, knitr, rmarkdown
testthat (>= 3.0.0), devtools, httr, knitr, rmarkdown
knitr, lattice, testthat (>= 0.9.0), XML
BiocManager, knitr, lattice, testthat (>= 0.9.0), XML
remotes, withr, testthat (>= 3.0.0), knitr, rmarkdown
remotes, withr, pkgsearch, mockery, testthat (>= 3.0.0),
knitr, rmarkdown
remotes, renv, withr, pkgsearch, mockery, testthat (>=
3.0.0), knitr, rmarkdown
nomnoml, remotes, renv, withr, pkgsearch, posterdown,
mockery, testthat (>= 3.0.0), knitr, rmarkdown
lubridate, ggplot2, testthat, knitr, rmarkdown, lazyeval,
dplyr, tidyr, data.table
lubridate, ggplot2, testthat, knitr, rmarkdown, lazyeval,
tidyr, data.table
ggplot2, testthat, knitr, rmarkdown, lazyeval, tidyr,
data.table
ggplot2, testthat, knitr, rmarkdown, lazyeval, tidyr,
data.table, lintr
testthat, covr, knitr, ggpubr, rmarkdown, microbenchmark
promises, testit, xaringan, pdftools, revealjs
promises, testit, xaringan, pdftools, revealjs, covr
promises, testit, xaringan, pdftools, revealjs, covr, xml2
ggplot2, knitr, lattice, rmarkdown, testthat
testthat, knitr, rmarkdown, WikipediR, WikidataR
AnnotationDbi, base64enc, BiocGenerics, BiocParallel,
colorRamps, data.table, dbscan, dplyr, ggplot2, GO.db,
gridExtra, KernSmooth, knitr, org.Dr.eg.db, org.Hs.eg.db,
org.Mm.eg.db, p2data, pcaMethods, pheatmap, rgl, rmarkdown,
robustbase, scde, testthat, uwot
AnnotationDbi, base64enc, BiocGenerics, BiocParallel,
colorRamps, data.table, dbscan, dplyr, ggplot2, GO.db,
gridExtra, KernSmooth, knitr, org.Dr.eg.db, org.Hs.eg.db,
org.Mm.eg.db, pcaMethods, pheatmap, rgl, rmarkdown, robustbase,
scde, testthat, uwot
micropan, patchwork, ape, phangorn, pegas, DECIPHER,
rhierbaps, IRanges, knitr, rmarkdown, testthat, covr
micropan, patchwork, ape, phangorn, pegas, DECIPHER,
rhierbaps, knitr, rmarkdown, testthat, covr
callr (>= 3.5.0), cli (>= 3.0.0), covr, curl, distro,
filelock (>= 1.0.2), glue (>= 1.3.0), mockery, pingr, jsonlite,
pkgcache (>= 1.2.0), pkgdepends (>= 0.1.2.9001), pkgsearch (>=
3.0.3), prettyunits, processx (>= 3.5.1), ps (>= 1.6.0),
rprojroot (>= 1.3-2), rstudioapi, testthat, tibble, withr
callr (>= 3.7.0), cli (>= 3.2.0), covr, curl (>= 4.3.2), desc
(>= 1.4.1), digest, distro, filelock (>= 1.0.2), gitcreds, glue
(>= 1.6.2), mockery, pingr, jsonlite (>= 1.8.0), pkgcache (>=
2.0.1), pkgdepends (>= 0.3.0), pkgsearch (>= 3.1.0),
prettyunits, processx (>= 3.5.2), ps (>= 1.6.0), rprojroot (>=
2.0.2), rstudioapi, testthat, withr
fields, knitr, rmarkdown, gstat, sp, tidyverse
divDyn, rmarkdown, knitr, testthat (>= 3.0.0), vdiffr (>=
1.0.0), paleotree, covr
testthat (>= 3.0.0), knitr, rmarkdown, markdown, dplyr,
raster
covr, testthat, ggplot2, knitr, rmarkdown
covr, testthat (>= 2.1.0), ggplot2, knitr, rmarkdown, vdiffr
covr, testthat (>= 2.1.0), ggplot2 (>= 3.3.0), knitr,
rmarkdown, vdiffr
covr, gameofthrones (>= 1.0.0), ggplot2 (>= 3.3.0), ggthemes
(>= 4.0.0), harrypotter (>= 2.1.0), knitr, oompaBase, palr,
pals, rmarkdown, scico, testthat (>= 2.1.0), vdiffr,
viridisLite
covr, ggplot2 (>= 3.3.0), ggthemes (>= 4.0.0), harrypotter
(>= 2.1.0), knitr, oompaBase, palr, pals, rmarkdown, scico,
testthat (>= 2.1.0), vdiffr, viridisLite
knitr, rmarkdown, tibble, ggplot2, dplyr, tidyr, recipes
knitr, raster, rmarkdown, testthat, covr
knitr, raster, rmarkdown, sp, testthat, covr, stars, viridis,
graticule
knitr, rmarkdown, raster, testthat, covr, stars, viridis
classInt, ggplot2, knitr, latticeExtra, reshape2, testthat
classInt, ggplot2, knitr, latticeExtra, reshape2, rgl,
testthat
classInt, ggplot2, knitr, latticeExtra, reshape2, rgl,
rmarkdown, testthat
RColorBrewer, scam, coxme, testthat, timereg, knitr,
rmarkdown, grid, gridExtra, covr, pkgdown
RColorBrewer, scam, coxme, testthat, timereg, knitr,
rmarkdown, grid, gridExtra, covr
grid, lattice, ggplot2 (>= 0.9.2), koRpus, survival,
microbenchmark, zoo, nlme, descr, MASS, knitr
grid, lattice, ggplot2 (>= 0.9.2), koRpus, survival,
microbenchmark, zoo, nlme, descr, MASS, knitr, tables
grid, lattice, ggplot2 (>= 0.9.2), koRpus, futile.logger,
survival, microbenchmark, zoo, nlme, descr, MASS, knitr,
tables, reshape, memisc, Epi, randomForest, tseries, gtable,
rms
grid, lattice, ggplot2 (>= 0.9.2), koRpus, futile.logger,
survival, microbenchmark, zoo, nlme, descr, MASS, knitr,
rmarkdown, tables, reshape, memisc, Epi, randomForest, tseries,
gtable, rms, forecast, data.table
grid, lattice, ggplot2 (>= 0.9.2), sylly, sylly.en,
futile.logger, survival, microbenchmark, zoo, nlme, descr,
MASS, knitr, rmarkdown, tables, reshape, memisc, Epi,
randomForest, tseries, gtable, rms, forecast, data.table
grid, lattice, ggplot2 (>= 0.9.2), sylly, sylly.en, logger,
survival, microbenchmark, zoo, nlme, descr, MASS, knitr,
rmarkdown, tables, reshape, memisc, Epi, randomForest, tseries,
gtable, rms, forecast, data.table
covr, gh, rmarkdown (>= 2.14), testthat (>= 3.0.0), tibble,
withr
brms, broom, car, clubSandwich, geepack, nlme, plm, sandwich,
skimr, tidyr (>= 0.8.3), testthat, covr, knitr, rmarkdown
brms, broom, car, clubSandwich, geepack, generics, nlme, plm,
sandwich, skimr, tidyr (>= 0.8.3), testthat, covr, knitr,
rmarkdown
brms, broom.mixed, car, clubSandwich, geepack, generics,
nlme, plm, sandwich, skimr, tidyr (>= 0.8.3), testthat, covr,
knitr, rmarkdown
celestial, FITSio, knitr, magicaxis, magick, rmarkdown
afex, BayesFactor, beeswarm, boot, car, dplyr, effectsize (>=
0.4.4), emmeans, ggforce, ggplot2, latex2exp, lme4, lmerTest,
MBESS, multcomp, nlme, R.rsp, skimr, spelling, testthat
nlme, knitr, testthat (>= 0.10.0), foreign
nlme, knitr, rmarkdown, testthat (>= 0.10.0), foreign
dtw, ggplot2, proxy, highlight, testthat
dtw, ggplot2, proxy, highlight, testthat, RcppArmadillo,
RcppXPtrUtils
dtw, ggplot2, proxy, testthat, RcppArmadillo, RcppXPtrUtils
testthat, parallel, Rmpi, BatchJobs (>= 1.2)
BatchJobs (>= 1.8), batchtools (>= 0.9.6), data.table, Rmpi,
testthat
BatchJobs (>= 1.8), batchtools (>= 0.9.6), data.table, Rmpi,
rpart, snow, testthat
BayesFM, BayesFactor, boot, brms, cAIC4, covr, dplyr, EGAnet
(>= 0.7), knitr, lavaan, lme4, lmerTest, logspline, MASS,
MuMIn, nFactors, pbkrtest, psych, projpred, randomForest,
rmarkdown, rstanarm, see, survey, testthat, VGAM
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, blme,
boot, brglm2, brms, broom, cAIC4, car, clubSandwich, cluster,
covr, cplm, dplyr, DRR, effectsize (>= 0.4.0), EGAnet (>= 0.7),
FactoMineR, fastICA, gam, gamlss, gee, geepack, ggplot2,
GLMMadaptive, glmmTMB, GPArotation, lavaan, lavaSearch2, lfe,
lme4, lmerTest, logspline, knitr, MASS, magrittr, Matrix,
mclust, MCMCglmm, mediation, metaBMA, metafor, mice, mfx, mgcv,
multcomp, multimode, MuMIn, M3C, NbClust, nFactors, nlme,
performance (>= 0.5.1), plm, projpred, pscl, psych, quantreg,
randomForest, rmarkdown, rstanarm, sandwich, see, sjstats,
spelling, survey, survival, testthat, TMB, tripack, truncreg,
VGAM
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, blme,
boot, brglm2, brms, broom, cAIC4, car, clubSandwich, cluster,
covr, cplm, dplyr, DRR, effectsize (>= 0.4.1), EGAnet (>= 0.7),
FactoMineR, fastICA, gam, gamlss, gee, geepack, ggplot2,
GLMMadaptive, glmmTMB, GPArotation, lavaan, lavaSearch2, lme4,
lmerTest, logspline, knitr, MASS, magrittr, Matrix, mclust,
MCMCglmm, mediation, metaBMA, metafor, mice, mfx, mgcv,
multcomp, multimode, MuMIn, M3C, NbClust, nFactors, nlme,
performance (>= 0.5.1), plm, projpred, pscl, psych, quantreg,
randomForest, rmarkdown, rstanarm, sandwich, see, sjstats,
spelling, survey, survival, testthat, TMB, tripack, truncreg,
VGAM
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, blme,
boot, brglm2, brms, broom, cAIC4, car, clubSandwich, cluster,
covr, cplm, dplyr, DRR, effectsize (>= 0.4.1), EGAnet (>= 0.7),
FactoMineR, fastICA, gam, gamlss, gee, geepack, ggplot2,
GLMMadaptive, glmmTMB, GPArotation, gt, lavaan, lavaSearch2,
lme4, lmerTest, logspline, knitr, MASS, magrittr, Matrix,
mclust, MCMCglmm, mediation, metaBMA, metafor, mice, mfx, mgcv,
multcomp, multimode, MuMIn, M3C, NbClust, nFactors, nlme,
performance (>= 0.5.1), plm, PMCMRplus, projpred, pscl, psych,
quantreg, randomForest, rmarkdown, rstanarm, sandwich, see,
sjstats, spelling, survey, survival, testthat, TMB, tripack,
truncreg, VGAM, WRS2
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, blme,
boot, brglm2, brms, broom, cAIC4, car, clubSandwich, cluster,
covr, cplm, dplyr, DRR, effectsize (>= 0.4.3), emmeans (>=
1.4), EGAnet (>= 0.7), FactoMineR, fastICA, gam, gamlss, gee,
geepack, ggplot2, GLMMadaptive, glmmTMB, GPArotation, gt,
lavaan, lavaSearch2, lme4, lmerTest, logspline, knitr, MASS,
magrittr, Matrix, mclust, MCMCglmm, mediation, metaBMA,
metafor, mice, mfx, mgcv, multcomp, multimode, MuMIn, M3C,
NbClust, nFactors, nlme, performance (>= 0.7.0), plm,
PMCMRplus, projpred, pscl, psych, quantreg, randomForest,
rmarkdown, rstanarm, sandwich, see, sjstats, spelling, survey,
survival, testthat, TMB, tripack, truncreg, VGAM, WRS2
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, blme,
boot, brglm2, brms, broom, cAIC4, car, cgam, clubSandwich,
cluster, cplm, dplyr, DRR, effectsize (>= 0.4.3), emmeans (>=
1.4), EGAnet (>= 0.7), FactoMineR, fastICA, gam, gamlss, gee,
geepack, ggplot2, GLMMadaptive, glmmTMB, GPArotation, gt,
lavaan, lavaSearch2, lme4, lmerTest, logspline, lqmm, knitr,
MASS, magrittr, Matrix, mclust, MCMCglmm, mediation, metaBMA,
metafor, mice, mfx, mgcv, multcomp, multimode, MuMIn, M3C,
NbClust, nFactors, nlme, panelr, performance (>= 0.7.0), plm,
PMCMRplus, pbkrtest, projpred, pscl, psych, quantreg,
randomForest, rmarkdown, rstanarm, sandwich, see, sjstats,
spelling, survey, survival, testthat, TMB, tripack, truncreg,
VGAM, WRS2
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, blme,
boot, brglm2, brms, broom, cAIC4, car, cgam, clubSandwich,
cluster, cplm, dplyr, DRR, effectsize (>= 0.4.4-1), emmeans (>=
1.4), EGAnet (>= 0.7), FactoMineR, fastICA, gam, gamlss, gee,
geepack, ggplot2, GLMMadaptive, glmmTMB, GPArotation, gt,
lavaan, lavaSearch2, lm.beta, lme4, lmerTest, logspline, lqmm,
knitr, MASS, magrittr, Matrix, mclust, MCMCglmm, mediation,
metaBMA, metafor, mice, mfx, mgcv, multcomp, multimode, MuMIn,
M3C, NbClust, nFactors, nlme, panelr, performance (>= 0.7.2),
plm, PMCMRplus, pbkrtest, projpred, pscl, psych, quantreg,
randomForest, rmarkdown, rstanarm, sandwich, see, sjstats,
spelling, survey, survival, testthat, TMB, tripack, truncreg,
VGAM, WRS2
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, biglm,
blme, boot, brglm2, brms, broom, cAIC4, car, cgam,
ClassDiscovery, clubSandwich, cluster, cplm, dbscan, dplyr,
drc, DRR, effectsize (>= 0.5), EGAnet (>= 0.7), emmeans (>=
1.7.0), factoextra, FactoMineR, fastICA, fpc, gam, gamlss, gee,
geepack, ggplot2, GLMMadaptive, glmmTMB, GPArotation, gt,
ivprobit, ivreg, knitr, lavaan, lavaSearch2, lfe, lm.beta,
lme4, lmerTest, logspline, lqmm, M3C, magrittr, MASS, Matrix,
mclust, MCMCglmm, mediation, metaBMA, metafor, mfx, mgcv, mice,
multcomp, MuMIn, NbClust, nFactors, nlme, nnet, openxlsx,
panelr, pbkrtest, PCDimension, performance (>= 0.8.0), plm,
PMCMRplus, PROreg, projpred, pscl, psych, pvclust, quantreg,
randomForest, rmarkdown, rstanarm, sandwich, see (>= 0.6.8),
sjstats, spelling, survey, survival, testthat, TMB, tripack,
truncreg, VGAM, WRS2
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, biglm,
blme, boot, brglm2, brms, broom, cAIC4, car, cgam,
ClassDiscovery, clubSandwich, cluster, cplm, dbscan, drc, DRR,
effectsize (>= 0.5.0), EGAnet (>= 0.7), emmeans (>= 1.7.0),
factoextra, FactoMineR, fastICA, fpc, gam, gamlss, gee,
geepack, ggplot2, GLMMadaptive, glmmTMB, GPArotation, gt,
ivprobit, ivreg, knitr, lavaan, lavaSearch2, lfe, lm.beta,
lme4, lmerTest, logspline, lqmm, M3C, magrittr, MASS, Matrix,
mclust, MCMCglmm, mediation, metaBMA, metafor, mfx, mgcv, mice,
multcomp, MuMIn, NbClust, nFactors, nlme, nnet, openxlsx,
ordinal, panelr, pbkrtest, PCDimension, performance (>= 0.8.0),
plm, PMCMRplus, poorman, PROreg, projpred, pscl, psych,
pvclust, quantreg, randomForest, rmarkdown, rstanarm, sandwich,
see (>= 0.6.8), sjstats, spelling, survey, survival, testthat,
TMB, tripack, truncreg, VGAM, WRS2
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, biglm,
blme, boot, brglm2, brms, broom, cAIC4, car, cgam,
ClassDiscovery, clubSandwich, cluster, cplm, dbscan, drc, DRR,
effectsize (>= 0.5.0), EGAnet (>= 0.7), emmeans (>= 1.7.0),
factoextra, FactoMineR, fastICA, fixest, fpc, gam, gamlss, gee,
geepack, ggplot2, GLMMadaptive, glmmTMB, GPArotation, gt, httr,
ivprobit, ivreg, knitr, lavaan, lavaSearch2, lfe, lm.beta,
lme4, lmerTest, lmtest, logspline, lqmm, M3C, magrittr, MASS,
Matrix, mclust, MCMCglmm, mediation, metaBMA, metafor, mfx,
mgcv, mice, multcomp, MuMIn, NbClust, nFactors, nlme, nnet,
openxlsx, ordinal, panelr, pbkrtest, PCDimension, performance
(>= 0.8.0), plm, PMCMRplus, poorman, PROreg, projpred, pscl,
psych, pvclust, quantreg, randomForest, rmarkdown, rstanarm,
sandwich, see (>= 0.6.8), sjstats, spelling, survey, survival,
testthat, TMB, tripack, truncreg, VGAM, WRS2
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, biglm,
blme, boot, brglm2, brms, broom, cAIC4, car, cgam,
ClassDiscovery, clubSandwich, cluster, cplm, dbscan, drc, DRR,
effectsize (>= 0.6.0), EGAnet (>= 0.7), emmeans (>= 1.7.0),
factoextra, FactoMineR, fastICA, fixest, fpc, gam, gamlss, gee,
geepack, ggplot2, GLMMadaptive, glmmTMB, GPArotation, gt, httr,
ivprobit, ivreg, knitr, lavaan, lavaSearch2, lfe, lm.beta,
lme4, lmerTest, lmtest, logspline, lqmm, M3C, magrittr,
marginaleffects, MASS, Matrix, mclust, MCMCglmm, mediation,
merDeriv, metaBMA, metafor, mfx, mgcv, mice, multcomp, MuMIn,
NbClust, nFactors, nlme, nnet, openxlsx, ordinal, panelr,
pbkrtest, PCDimension, performance (>= 0.8.0), plm, PMCMRplus,
poorman, posterior, PROreg, pscl, psych, pvclust, quantreg,
randomForest, rmarkdown, rms, rstanarm, sandwich, see (>=
0.6.9), sjstats, spelling, survey, survival, testthat, TMB,
tripack, truncreg, VGAM, WRS2
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, biglm,
blme, boot, brglm2, brms, broom, cAIC4, car, cgam,
ClassDiscovery, clubSandwich, cluster, cplm, dbscan, domir (>=
0.2.0), drc, DRR, effectsize (>= 0.6.0), EGAnet (>= 0.7),
emmeans (>= 1.7.0), factoextra, FactoMineR, fastICA, fixest,
fpc, gam, gamlss, gee, geepack, ggplot2, GLMMadaptive, glmmTMB,
GPArotation, gt, httr, Hmisc, ivprobit, ivreg, knitr, lavaan,
lavaSearch2, lfe, lm.beta, lme4, lmerTest, lmtest, logspline,
lqmm, M3C, magrittr, marginaleffects, MASS, Matrix, mclust,
MCMCglmm, mediation, merDeriv, metaBMA, metafor, mfx, mgcv,
mice, multcomp, MuMIn, NbClust, nFactors, nlme, nnet, openxlsx,
ordinal, panelr, pbkrtest, PCDimension, performance (>= 0.8.0),
plm, PMCMRplus, poorman, posterior, PROreg, pscl, psych,
pvclust, quantreg, randomForest, rmarkdown, rms, rstanarm,
sandwich, see (>= 0.6.9), sjstats, survey, survival, testthat,
TMB, truncreg, VGAM, WRS2
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, biglm,
blme, boot, brglm2, brms, broom, cAIC4, car, cgam,
ClassDiscovery, clubSandwich, cluster, cplm, dbscan, domir (>=
0.2.0), drc, DRR, effectsize (>= 0.6.0), EGAnet (>= 0.7),
emmeans (>= 1.7.0), factoextra, FactoMineR, fastICA, fixest,
fpc, gam, gamlss, gee, geepack, ggplot2, GLMMadaptive, glmmTMB,
GPArotation, gt, haven, httr, Hmisc, ivprobit, ivreg, knitr,
lavaan, lavaSearch2, lfe, lm.beta, lme4, lmerTest, lmtest,
logspline, lqmm, M3C, magrittr, marginaleffects, MASS, Matrix,
mclust, MCMCglmm, mediation, merDeriv, metaBMA, metafor, mfx,
mgcv, mice, multcomp, MuMIn, NbClust, nFactors, nlme, nnet,
openxlsx, ordinal, panelr, pbkrtest, PCDimension, performance
(>= 0.10.0), plm, PMCMRplus, poorman, posterior, PROreg, pscl,
psych, pvclust, quantreg, randomForest, rmarkdown, rms,
rstanarm, rsvd, sandwich, see (>= 0.6.9), sparsepca, survey,
survival, testthat, TMB, truncreg, VGAM, WRS2
AER, aod, BayesFM, BayesFactor, betareg, boot, brms, cAIC4,
covr, dplyr, DRR, EGAnet (>= 0.7), FactoMineR, fastICA, gamlss,
gee, geepack, GLMMadaptive, glmmTMB, knitr, lavaan, lme4,
lmerTest, logspline, MASS, Matrix, MCMCglmm, mgcv, MuMIn,
nFactors, nlme, panelr, pbkrtest, plm, projpred, pscl, psych,
randomForest, rmarkdown, rstanarm, see, survey, survival,
testthat, VGAM, Zelig
AER, afex, aod, BayesFactor, BayesFM, bbmle, betareg, biglm,
blme, boot, brglm2, brms, broom, cAIC4, car, cgam,
ClassDiscovery, clubSandwich, cluster, cplm, dbscan, domir (>=
0.2.0), drc, DRR, effectsize (>= 0.8.0), EGAnet (>= 0.7),
emmeans (>= 1.7.0), factoextra, FactoMineR, fastICA, fixest,
fpc, gam, gamlss, gee, geepack, ggplot2, GLMMadaptive, glmmTMB,
GPArotation, gt, haven, httr, Hmisc, ivprobit, ivreg, knitr,
lavaan, lavaSearch2, lfe, lm.beta, lme4, lmerTest, lmtest,
logspline, lqmm, M3C, magrittr, marginaleffects, MASS, Matrix,
mclust, MCMCglmm, mediation, merDeriv, metaBMA, metafor, mfx,
mgcv, mice, multcomp, MuMIn, NbClust, nFactors, nlme, nnet,
openxlsx, ordinal, panelr, pbkrtest, PCDimension, performance
(>= 0.10.0), plm, PMCMRplus, poorman, posterior, PROreg, pscl,
psych, pvclust, quantreg, randomForest, rmarkdown, rms,
rstanarm, rsvd, sandwich, see (>= 0.6.9), sparsepca, survey,
survival, testthat, tidyselect, TMB, truncreg, VGAM, WRS2
AER, aod, BayesFM, BayesFactor, betareg, boot, brms, cAIC4,
cluster, clValid, covr, dplyr, DRR, effectsize, EGAnet (>=
0.7), FactoMineR, fastICA, gamlss, gee, geepack, GLMMadaptive,
glmmTMB, knitr, lavaan, lme4, lmerTest, logspline, MASS,
Matrix, MCMCglmm, mclust, mgcv, multimode, MuMIn, NbClust,
nFactors, nlme, panelr, pbkrtest, plm, projpred, pscl, psych,
randomForest, rmarkdown, rstanarm, sandwich, see, survey,
survival, testthat, TMB, VGAM, Zelig
AER, aod, BayesFactor, BayesFM, betareg, boot, brms, cAIC4,
clubSandwich, cluster, covr, cplm, dplyr, DRR, effectsize,
EGAnet (>= 0.7), FactoMineR, fastICA, gamlss, gee, geepack,
GLMMadaptive, glmmTMB, GPArotation, lavaan, lme4, lmerTest,
logspline, MASS, Matrix, mclust, MCMCglmm, mgcv, multimode,
MuMIn, NbClust, nFactors, nlme, panelr, pbkrtest, plm,
projpred, pscl, psych, randomForest, rmarkdown, rstanarm,
sandwich, see, sjstats, spelling, survey, survival, testthat,
TMB, VGAM, Zelig
AER, aod, BayesFactor, BayesFM, betareg, boot, brms, cAIC4,
clubSandwich, cluster, covr, cplm, dplyr, DRR, effectsize,
EGAnet (>= 0.7), FactoMineR, fastICA, gamlss, gee, geepack,
GLMMadaptive, glmmTMB, GPArotation, lavaan, lme4, lmerTest,
logspline, MASS, Matrix, mclust, MCMCglmm, mgcv, multimode,
MuMIn, NbClust, nFactors, nlme, panelr, pbkrtest, plm, pscl,
psych, randomForest, rmarkdown, rstanarm, sandwich, see,
sjstats, spelling, survey, survival, testthat, TMB, VGAM, Zelig
AER, aod, BayesFactor, BayesFM, betareg, boot, brglm2, brms,
cAIC4, clubSandwich, cluster, covr, cplm, dplyr, DRR,
effectsize, EGAnet (>= 0.7), FactoMineR, fastICA, gamlss, gee,
geepack, GLMMadaptive, glmmTMB, GPArotation, lavaan,
lavaSearch2, lme4, lmerTest, logspline, knitr, MASS, Matrix,
mclust, MCMCglmm, metafor, mgcv, multimode, MuMIn, M3C,
NbClust, nFactors, nlme, panelr, performance, plm, projpred,
pscl, psych, randomForest, rmarkdown, rstanarm, sandwich, see,
sjstats, spelling, survey, survival, testthat, TMB, truncreg,
VGAM, Zelig
AER, aod, BayesFactor, BayesFM, betareg, boot, brglm2, brms,
cAIC4, car, clubSandwich, cluster, covr, cplm, dplyr, DRR,
effectsize, EGAnet (>= 0.7), FactoMineR, fastICA, gamlss, gee,
geepack, GLMMadaptive, glmmTMB, GPArotation, lavaan,
lavaSearch2, lfe, lme4, lmerTest, logspline, knitr, MASS,
Matrix, mclust, MCMCglmm, metafor, mgcv, multimode, MuMIn, M3C,
NbClust, nFactors, nlme, panelr, performance, plm, projpred,
pscl, psych, randomForest, rmarkdown, rstanarm, sandwich, see,
sjstats, spelling, survey, survival, testthat, TMB, truncreg,
VGAM
AER, aod, BayesFactor, BayesFM, betareg, boot, brglm2, brms,
cAIC4, car, clubSandwich, cluster, covr, cplm, dplyr, DRR,
effectsize (>= 0.3.0), EGAnet (>= 0.7), FactoMineR, fastICA,
gamlss, gee, geepack, ggplot2, GLMMadaptive, glmmTMB,
GPArotation, lavaan, lavaSearch2, lfe, lme4, lmerTest,
logspline, knitr, MASS, Matrix, mclust, MCMCglmm, metafor,
mgcv, multimode, MuMIn, M3C, NbClust, nFactors, nlme, panelr,
performance, plm, projpred, pscl, psych, randomForest,
rmarkdown, rstanarm, sandwich, see, sjstats, spelling, survey,
survival, testthat, TMB, truncreg, VGAM
AER, aod, BayesFactor, BayesFM, betareg, boot, brglm2, brms,
cAIC4, car, clubSandwich, cluster, covr, cplm, dplyr, DRR,
effectsize (>= 0.3.0), EGAnet (>= 0.7), FactoMineR, fastICA,
gamlss, gee, geepack, ggplot2, GLMMadaptive, glmmTMB,
GPArotation, lavaan, lavaSearch2, lfe, lme4, lmerTest,
logspline, knitr, MASS, Matrix, mclust, MCMCglmm, metafor, mfx,
mgcv, multimode, MuMIn, M3C, NbClust, nFactors, nlme,
performance, plm, projpred, pscl, psych, randomForest,
rmarkdown, rstanarm, sandwich, see, sjstats, spelling, survey,
survival, testthat, TMB, truncreg, VGAM
AER, aod, BayesFactor, BayesFM, betareg, boot, brglm2, brms,
cAIC4, car, clubSandwich, cluster, covr, cplm, dplyr, DRR,
effectsize (>= 0.3.0), EGAnet (>= 0.7), FactoMineR, fastICA,
gamlss, gee, geepack, ggplot2, GLMMadaptive, glmmTMB,
GPArotation, lavaan, lavaSearch2, lfe, lme4, lmerTest,
logspline, knitr, MASS, Matrix, mclust, MCMCglmm, metafor, mfx,
mgcv, multcomp, multimode, MuMIn, M3C, NbClust, nFactors, nlme,
panelr, performance, plm, projpred, pscl, psych, quantreg,
randomForest, rmarkdown, rstanarm, sandwich, see, sjstats,
spelling, survey, survival, testthat, TMB, tripack, truncreg,
VGAM
AER, aod, BayesFactor, BayesFM, bbmle, betareg, boot, brglm2,
brms, cAIC4, car, clubSandwich, cluster, covr, cplm, dplyr,
DRR, effectsize (>= 0.3.0), EGAnet (>= 0.7), FactoMineR,
fastICA, gamlss, gee, geepack, ggplot2, GLMMadaptive, glmmTMB,
GPArotation, lavaan, lavaSearch2, lfe, lme4, lmerTest,
logspline, knitr, MASS, Matrix, mclust, MCMCglmm, metafor,
mice, mfx, mgcv, multcomp, multimode, MuMIn, M3C, NbClust,
nFactors, nlme, performance, plm, projpred, pscl, psych,
quantreg, randomForest, rmarkdown, rstanarm, sandwich, see,
sjstats, spelling, survey, survival, testthat, TMB, tripack,
truncreg, VGAM
AER, aod, BayesFactor, BayesFM, bbmle, betareg, boot, brglm2,
brms, cAIC4, car, cluster, covr, cplm, dplyr, DRR, effectsize
(>= 0.4.0), EGAnet (>= 0.7), FactoMineR, fastICA, gamlss, gee,
geepack, ggplot2, GLMMadaptive, glmmTMB, GPArotation, lavaan,
lavaSearch2, lfe, lme4, lmerTest, logspline, knitr, MASS,
Matrix, mclust, MCMCglmm, metaBMA, metafor, mice, mfx, mgcv,
multcomp, multimode, MuMIn, M3C, NbClust, nFactors, nlme,
performance, plm, projpred, pscl, psych, quantreg,
randomForest, rmarkdown, rstanarm, sandwich, see, sjstats,
spelling, survey, survival, testthat, TMB, tripack, truncreg,
VGAM
parallel, beepr, pwr, ggplot2, knitr, nlme, lavaan, dplyr,
testthat, rmarkdown
testthat, covr, randomForest, knitr, rmarkdown, spelling
testthat, covr, randomForest, knitr, rmarkdown, spelling,
plotly, shiny
d3r, ggplot2, htmltools, knitr, shiny, testthat, rmarkdown
testthat, SuppDists, knitr, rmarkdown, speedglm,
microbenchmark, R.rsp
knitr, rmarkdown, testthat, covr, rgdal, devtools, sf,
leaflet, htmltools, cartogram,
knitr, rmarkdown, testthat, covr, rgdal, devtools, leaflet,
htmltools, cartogram, htmlwidgets
knitr, rmarkdown, testthat, covr, rgdal, devtools, leaflet,
htmltools, cartogram, htmlwidgets, ggplot2
knitr, rmarkdown, testthat, covr, rgdal, devtools, leaflet,
htmltools, cartogram, htmlwidgets, ggplot2, tibble
knitr, rmarkdown, testthat, covr, rgdal, devtools, leaflet,
htmltools, cartogram, htmlwidgets, ggplot2, tibble, janitor
rmarkdown, knitr, testthat (>= 3.0.0), covr (>= 3.5.1)
testthat (>= 1.0.2), knitr, rmarkdown, ggplot2
testthat, knitr, rmarkdown, survival, keras, xgboost, covr,
sparklyr
testthat, knitr, rmarkdown, survival, keras, xgboost, covr,
C50, sparklyr (>= 1.0.0), earth, glmnet, kernlab, kknn,
randomForest, ranger, rpart, MASS, nlme
testthat, knitr, rmarkdown, survival, keras, xgboost, covr,
C50, sparklyr (>= 1.0.0), earth, kernlab, kknn, randomForest,
ranger, rpart, MASS, nlme, modeldata
testthat, knitr, rmarkdown, survival, keras, xgboost, covr,
C50, sparklyr (>= 1.0.0), earth, kernlab, kknn, randomForest,
ranger, rpart, MASS, nlme, modeldata, liquidSVM
testthat, knitr, rmarkdown, survival, keras, xgboost, covr,
C50, sparklyr (>= 1.0.0), earth, kernlab, kknn, randomForest,
ranger (>= 0.12.0), rpart, MASS, nlme, modeldata, liquidSVM,
Matrix
testthat, knitr, rmarkdown, survival, keras, xgboost, covr,
C50, sparklyr (>= 1.0.0), earth, kernlab, kknn, randomForest,
ranger (>= 0.12.0), rpart, MASS, nlme, modeldata, LiblineaR,
Matrix
C50, covr, dials, earth, keras, kernlab, kknn, knitr,
LiblineaR, MASS, Matrix, mgcv, modeldata, nlme, randomForest,
ranger (>= 0.12.0), rmarkdown, rpart, sparklyr (>= 1.0.0),
survival, testthat, xgboost
C50, covr, dials (>= 0.0.10.9001), earth, tensorflow,
ggrepel, keras, kernlab, kknn, knitr, LiblineaR, MASS, Matrix,
mgcv, modeldata, nlme, ranger (>= 0.12.0), remotes, rmarkdown,
rpart, sparklyr (>= 1.0.0), survival, testthat, xgboost (>=
1.5.0.1)
C50, covr, dials (>= 0.1.0), earth, ggrepel, keras, kernlab,
kknn, knitr, LiblineaR, MASS, Matrix, mgcv, modeldata, nlme,
ranger (>= 0.12.0), remotes, rmarkdown, rpart, sparklyr (>=
1.0.0), survival, tensorflow, testthat (>= 3.0.0), xgboost (>=
1.5.0.1)
C50, covr, dials (>= 1.1.0), earth, ggrepel, keras, kernlab,
kknn, knitr, LiblineaR, MASS, Matrix, mgcv, modeldata, nlme,
ranger (>= 0.12.0), remotes, rmarkdown, rpart, sparklyr (>=
1.0.0), survival, tensorflow, testthat (>= 3.0.0), xgboost (>=
1.5.0.1)
testthat, future, furrr, knitr, rmarkdown, patchwork, covr
covr, spelling, testthat, knitr, rmarkdown
covr, knitr, rmarkdown, spelling, testthat, ggcorrplot
covr, knitr, rmarkdown, spelling, testthat (>= 3.0.0),
ggcorrplot
dplyr, withr, testthat, knitr, rmarkdown
ipred, mlbench, colorspace, MASS, mvtnorm
TH.data, mlbench, colorspace, MASS, mvtnorm, vcd
TH.data (>= 1.0-3), mlbench, colorspace, MASS, mvtnorm, vcd
TH.data (>= 1.0-3), mlbench, colorspace, MASS, mvtnorm, vcd,
ipred
TH.data (>= 1.0-3), mlbench, colorspace, MASS, vcd, ipred
TH.data (>= 1.0-3), mlbench, colorspace, MASS, vcd, ipred,
varImp
TH.data (>= 1.0-3), mlbench, colorspace, MASS, vcd, ipred,
varImp, randomForest
XML, pmml, mlbench, RWeka, rJava, rpart, mvtnorm, Formula
XML, pmml, mlbench, RWeka, rJava, rpart, mvtnorm, Formula,
ipred
XML, pmml, mlbench, rJava, rpart, mvtnorm, Formula, TH.data
XML, pmml, rJava, rpart, mvtnorm, Formula, sandwich,
strucchange, vcd, AER, mlbench, TH.data (>= 1.0-3), coin, RWeka
(>= 0.4-19), mvpart, datasets, psychotools, psychotree
XML, pmml, rJava, rpart, mvtnorm, Formula, sandwich,
strucchange, vcd, AER, mlbench, TH.data (>= 1.0-3), coin, RWeka
(>= 0.4-19), datasets, psychotools, psychotree
XML, pmml, rJava, rpart, mvtnorm, Formula, sandwich,
strucchange, vcd, AER, mlbench, TH.data (>= 1.0-3), coin, RWeka
(>= 0.4-19), datasets, parallel, psychotools, psychotree
XML, pmml, rJava, rpart, mvtnorm, Formula (>= 1.2-1),
sandwich, strucchange, vcd, AER, mlbench, TH.data (>= 1.0-3),
coin, RWeka (>= 0.4-19), datasets, parallel, psychotools,
psychotree
XML, pmml, rJava, rpart, mvtnorm, Formula (>= 1.2-1),
sandwich, strucchange, vcd, AER, mlbench, TH.data (>= 1.0-3),
coin (>= 1.1-0), RWeka (>= 0.4-19), datasets, parallel,
psychotools, psychotree
XML, pmml, rJava, rpart, mvtnorm, sandwich, strucchange, vcd,
AER, mlbench, TH.data (>= 1.0-3), coin (>= 1.1-0), RWeka (>=
0.4-19), datasets, parallel, psychotools, psychotree
XML, pmml, rJava, sandwich, strucchange, vcd, AER, mlbench,
TH.data (>= 1.0-3), coin (>= 1.1-0), RWeka (>= 0.4-19),
datasets, parallel, psychotools, psychotree, party
XML, pmml, rJava, sandwich, strucchange, vcd, AER, mlbench,
TH.data (>= 1.0-3), coin (>= 1.1-0), RWeka (>= 0.4-19),
datasets, parallel, psychotools (>= 0.3-0), psychotree, party
(>= 1.3-0)
XML, pmml, rJava, sandwich, strucchange, vcd, AER, mlbench,
TH.data (>= 1.0-3), coin (>= 1.1-0), RWeka (>= 0.4-19),
datasets, parallel, psychotools (>= 0.3-0), psychotree, party
(>= 1.3-0), randomForest
XML, pmml, rJava, sandwich, strucchange, vcd, AER, mlbench,
TH.data (>= 1.0-3), coin (>= 1.1-0), RWeka (>= 0.4-19),
datasets, parallel, psychotools (>= 0.3-0), psychotree,
testthat, randgeo, knitr, rmarkdown, callr, pkgbuild, pkgload
jsonlite, DT, ggplot2, tidyverse, gapminder, testthat, mockr,
covr, knitr, rmarkdown
covr, dplyr, DT, gapminder, ggplot2, jsonlite, knitr, mockr,
rmarkdown, testthat, tidyr
knitr, ggplot2, plyr, testthat (>= 2.1.0), covr
knitr, ggplot2, plyr, testthat (>= 2.1.0), covr, markdown,
rmarkdown
knitr, rmarkdown, gridGraphics, gridExtra, ragg, testthat (>=
2.1.0), vdiffr, covr
knitr, rmarkdown, gridGraphics, gridExtra, ragg, testthat (>=
2.1.0), vdiffr, covr, png
testthat, covr, knitr, readr, rmarkdown, tibble
testthat (>= 2.1.0), knitr, rmarkdown, config, yaml, fs,
magrittr
stringi, knitr, rmarkdown, testthat, BiocManager, xfun,
e1071, qpdf, tinytex, spelling
pander, shiny, testthat, grDevices, rmarkdown, gtable,
pdftools, viridisLite
digest, imager, knitr, mapproj, rgl, rmarkdown, spelling,
testthat, NbClust, xml2
digest, imager, knitr, mapproj, rgl, rmarkdown, testthat,
NbClust, xml2
digest, imager, knitr, mapproj, NbClust, rgl, rmarkdown,
testthat, xml2
digest, imager, knitr, mapproj, NbClust, rgl, rmarkdown,
testthat,
digest, imager, knitr, mapproj, NbClust, rgl, rmarkdown,
testthat(>= 2.99.0),
alphashape3d, digest, imager, knitr, mapproj, NbClust, rgl,
rmarkdown, testthat(>= 2.99.0),
alphashape3d, digest, imager, knitr, mapproj, rgl, rmarkdown,
testthat(>= 2.99.0),
alphashape3d, digest, imager, knitr, mapproj, rgl, rmarkdown,
testthat(>= 2.99.0), vdiffr
knitr, rmarkdown, testthat (>= 2.1.0), RCurl, ggplot2,
ggraph, igraph, imager, tidyr
testthat, knitr, rmarkdown, ggplot2, gridExtra
PerformanceAnalytics, foreach, grid, latticeExtra, testthat,
doParallel, knitr
PerformanceAnalytics, grid, testthat, doParallel, parallel,
knitr, spelling
knitr, rmarkdown, testthat, shiny, ggplot2, covr, qgraph
knitr, rmarkdown, testthat, shiny, ggplot2, covr, qgraph,
Matrix
covr, knitr, plotly, rmarkdown, shiny, testthat, vcfR
MASS, Matrix, Rgraphviz, mvtnorm, sfsmisc
MASS, Matrix, Rgraphviz, mvtnorm, huge, ggplot2
MASS, Matrix, Rgraphviz, mvtnorm, huge, ggplot2, dagitty
testthat, knitr, rmarkdown, covr, cowplot
ggplot2, data.table, gWidgets, RGtk2, strvalidator, testthat
testthat, knitr, curl, covr, pbapply, ggplot2, remotes,
rmarkdown, leaflet
testthat, knitr, curl, covr, pbapply, ggplot2, remotes,
rmarkdown, leaflet, dplyr
covr, curl, dplyr, ggplot2, knitr, leaflet, pbapply, remotes,
rmarkdown, testthat
covr, curl, dplyr, ggplot2, knitr, leaflet, pbapply, remotes,
rmarkdown, testthat, tmap
covr, curl, dplyr, ggplot2, knitr, leaflet, pbapply, remotes,
rmarkdown, testthat, tmap, bookdown, tidyverse
testthat, fUnitRoots, partsm, knitr, rmarkdown
knitr, rmarkdown, testthat, ggplot2, reshape2, viridis,
ggthemes
knitr, rmarkdown, testthat, grid, ggplot2, reshape2, viridis,
ggthemes
car, dplyr, ggplot2, lmtest, msm, pglm, plm, splm, survival,
texreg
car, dplyr, ggplot2, lmtest, msm, pglm, splm, survival,
texreg
e1071, kernlab, nnet, party, partykit, randomForest, rpart,
testthat, xgboost
C50, Cubist, e1071, kernlab, nnet, party, partykit,
randomForest, rpart, testthat, xgboost
C50, Cubist, e1071, earth, gbm, kernlab, nnet, party,
partykit, rpart, testthat, xgboost
C50, caret, Cubist, e1071, earth, gbm, kernlab, nnet, party,
partykit, randomForest, rpart, testthat, xgboost
C50, caret, Cubist, e1071, earth, gbm, kernlab, nnet, party,
partykit, randomForest, rpart, testthat, xgboost (>= 0.6-0)
adabag, C50, caret, Cubist, e1071, earth, gbm, ipred,
kernlab, nnet, party, partykit, randomForest, ranger, rpart,
testthat, xgboost (>= 0.6-0)
adabag, C50, caret, Cubist, e1071, earth, gbm, ipred,
kernlab, MASS, mda, nnet, party, partykit, randomForest,
ranger, rpart, testthat, xgboost (>= 0.6-0)
adabag, AmesHousing, C50, caret, Cubist, doParallel, dplyr,
e1071, earth, gbm, ipred, keras, kernlab, MASS, mda, nnet,
party, partykit, progress, randomForest, ranger, rpart,
testthat, xgboost (>= 0.6-0), knitr, rmarkdown, vip
adabag, AmesHousing, C50, caret, covr, Cubist, doParallel,
dplyr, e1071, earth, gbm, gridExtra, ICEbox, ipred, keras,
kernlab, magrittr, MASS, Matrix, mda, mlbench, nnet, party,
partykit, randomForest, ranger, reticulate, rpart, tinytest,
xgboost (>= 0.6-0), knitr, rmarkdown, vip
covr, grDevices, knitr, pillar, rmarkdown, spelling,
testthat, vdiffr
covr, knitr, pillar, rmarkdown, spelling, testthat, vdiffr
testthat, covr, lintr, knitr, curl, rmarkdown
knitr, rmarkdown, leaflet, leaflet.extras, gganimate, infer,
moderndive, readr, utils, gifski, ggplot2, forcats
testthat (>= 2.1.0), covr, badger, DBI, RSQLite
countrycode, tibble, testthat, knitr, rmarkdown
testthat, faahKO, knitr, rmarkdown, pander
timereg, randomSurvivalForest, party, rpart, cmprsk, foreach,
doMC
timereg, randomSurvivalForest, party, rpart, cmprsk, doMC,
CoxBoost
timereg, randomForestSRC, party, rpart, cmprsk, doMC,
CoxBoost, crrstep, riskRegression
timereg, randomForestSRC, party, cmprsk, rpart, doMC,
CoxBoost, crrstep, riskRegression, lava, Hmisc
timereg, randomForestSRC, party, cmprsk (>= 2.2-7), rpart,
doMC, CoxBoost, crrstep, riskRegression (>= 1.0.8), lava, Hmisc
(>= 3.14-4)
randomForestSRC, party, cmprsk (>= 2.2-7), rpart, doMC,
CoxBoost, crrstep, riskRegression (>= 1.0.8), lava (>= 1.4.1),
Hmisc (>= 3.14-4)
randomForestSRC, party, cmprsk (>= 2.2-7), rpart, CoxBoost,
crrstep, riskRegression (>= 1.0.8), lava (>= 1.4.1), Hmisc (>=
3.14-4)
randomForestSRC, party, cmprsk (>= 2.2-7), rpart, crrstep,
Hmisc (>= 3.14-4)
car, data.table, digest, dplyr, ggplot2, htmltools, knitr,
lubridate, qwraps2 (>= 0.5.0), scales, testthat
covr, data.table, DT, gridExtra, knitr, rmarkdown, shiny,
shinydashboard
testthat, mvtnorm, xml2, knitr, rmarkdown, R.rsp, abind,
kinship2, igraph
testthat, mvtnorm, xml2, knitr, rmarkdown, R.rsp, abind,
kinship2, igraph, TruncatedNormal
testthat, mvtnorm, xml2, knitr, rmarkdown, R.rsp, abind,
kinship2, igraph, TruncatedNormal, numDeriv
car, fields, georob, grDevices, grid, gstat, knitr, MASS,
methods, sp, SpatialTools
car, grDevices, grid, gstat, MASS, methods, moments, pbapply,
plyr, sp, SpatialTools, spsurvey, xtable
car, georob, grDevices, grid, gstat, MASS, methods, moments,
pbapply, plyr, randomForest, sp, SpatialTools, spsurvey, xtable
car, geoR, georob, grDevices, grid, gstat, MASS, methods,
moments, pbapply, plyr, randomForest, sp, SpatialTools,
spsurvey, xtable
car, fields, geoR, georob, grDevices, grid, gstat, knitr,
MASS, methods, moments, pbapply, plyr, randomForest,
RColorBrewer, sp, SpatialTools, spsurvey, xtable
testthat, igraph, knitr, rmarkdown, pedmut, kableExtra
igraph, kableExtra, knitr, pedmut, rmarkdown, testthat
dplyr, knitr, rmarkdown, treemap, visdat
rmarkdown, knitr, tidySEM, mice, testthat (>= 3.0.0)
rmarkdown, knitr, mice, testthat (>= 3.0.0)
Segmentor3IsBack, neuroblastoma, microbenchmark, cghseg,
testthat, future, directlabels (>= 2017.03.31)
Segmentor3IsBack, neuroblastoma, microbenchmark, testthat,
future, directlabels (>= 2017.03.31)
Segmentor3IsBack, neuroblastoma, microbenchmark, testthat,
future, future.apply, directlabels (>= 2017.03.31)
neuroblastoma, jointseg, testthat, future, future.apply,
directlabels (>= 2017.03.31)
testthat (>= 3.0.0), MASS, knitr, rmarkdown, directlabels,
ggplot2, reshape2
testthat (>= 2.1.0), knitr, rmarkdown, jsonlite
CoxBoost, locfit, penalized, codetools, randomSurvivalForest
spelling, knitr, rmarkdown, testthat, ggplot2, haven, MASS
spelling, knitr, rmarkdown, testthat, ggplot2, MASS, carData
magrittr, spelling, dplyr, knitr, rmarkdown, testthat,
ggplot2, MASS, carData, tidyr (>= 1.0.0), covr
brms, covr, graphics, glmmTMB, ggplot2, lme4, loo, Matrix,
MASS, mlogit, nlme, psych, rmarkdown, rstanarm, rstantools,
scales, testthat
AER, afex, BayesFactor, bayesplot, betareg, bigutilsr,
blavaan, brms, car, CompQuadForm, correlation, cplm, dbscan,
estimatr, fixest, forecast, gamm4, ggplot2, glmmTMB, httr, ICS,
ICSOutlier, ISLR, lavaan, lme4, lmtest, loo, magrittr, MASS,
Matrix, mclust, metafor, mgcv, mlogit, multimode, nlme,
nonnest2, ordinal, parallel, parameters, patchwork, poorman,
pscl, psych, randomForest, rmarkdown, rstanarm, rstantools,
sandwich, see, survey, survival, testthat, tweedie, VGAM
AER, afex, BayesFactor, bayesplot, betareg, bigutilsr,
blavaan, boot, brms, car, CompQuadForm, correlation, cplm,
dbscan, estimatr, fixest, forecast, gamm4, ggplot2, glmmTMB,
graphics, httr, ICS, ICSOutlier, ISLR, lavaan, lme4, lmtest,
loo, magrittr, MASS, Matrix, mclust, metafor, mgcv, mlogit,
multimode, nlme, nonnest2, ordinal, parallel, parameters,
patchwork, poorman, pscl, psych, randomForest, rmarkdown,
rstanarm, rstantools, sandwich, see, survey, survival,
testthat, tweedie, VGAM
AER, betareg, brms, covr, glmmTMB, lme4, loo, Matrix, MASS,
mlogit, nlme, ordinal, pscl, psych, randomForest, rmarkdown,
rstanarm, rstantools, see, survival, testthat
AER, betareg, brms, covr, glmmTMB, ICS, ICSOutlier, lavaan,
lme4, loo, Matrix, MASS, mlogit, nlme, ordinal, parallel, pscl,
psych, randomForest, rmarkdown, rstanarm, rstantools, see (>=
0.2.1), survival, testthat
AER, betareg, brms, bigutilsr, dbscan, covr, glmmTMB, ICS,
ICSOutlier, lavaan, lme4, loo, Matrix, MASS, mlogit, nlme,
ordinal, parallel, pscl, psych, randomForest, rmarkdown,
rstanarm, rstantools, see (>= 0.2.1), survival, solitude,
testthat
AER, betareg, brms, bigutilsr, dbscan, covr, fixest, glmmTMB,
ICS, ICSOutlier, lavaan, lme4, loo, Matrix, MASS, mlogit, nlme,
ordinal, parallel, pscl, psych, randomForest, rmarkdown,
rstanarm, rstantools, see (>= 0.2.1), survival, solitude,
testthat, VGAM
AER, betareg, bigutilsr, brms, covr, cplm, dbscan, fixest,
glmmTMB, ICS, ICSOutlier, lavaan, lme4, loo, Matrix, MASS,
mlogit, nlme, ordinal, parallel, parameters, pscl, psych,
randomForest, rmarkdown, rstanarm, rstantools, see (>= 0.4.0),
survival, solitude, testthat, tweedie, VGAM
AER, betareg, bigutilsr, brms, covr, cplm, dbscan, fixest,
glmmTMB, ICS, ICSOutlier, lavaan, lme4, loo, Matrix, MASS,
mlogit, nlme, ordinal, parallel, parameters (>= 0.5.0), pscl,
psych, randomForest, rmarkdown, rstanarm, rstantools, see (>=
0.4.0), survival, solitude, testthat, tweedie, VGAM, spelling
AER, betareg, bigutilsr, brms, covr, cplm, dbscan, fixest,
forecast, glmmTMB, ICS, ICSOutlier, lavaan, lme4, loo, Matrix,
MASS, metafor, mlogit, nlme, ordinal, parallel, parameters (>=
0.5.0), pscl, psych, randomForest, rmarkdown, rstanarm,
rstantools, see (>= 0.4.0), survey, survival, solitude,
testthat, tweedie, VGAM, spelling
AER, betareg, bigutilsr, brms, covr, cplm, dbscan, fixest,
forecast, glmmTMB, ICS, ICSOutlier, lavaan, lme4, loo, Matrix,
MASS, metafor, mlogit, nlme, ordinal, parallel, parameters (>=
0.5.0), pscl, psych, randomForest, rmarkdown, rstanarm,
rstantools, see (>= 0.4.0), survey, survival, testthat,
tweedie, VGAM, spelling
AER, betareg, bigutilsr, brms, covr, cplm, dbscan, fixest,
forecast, ggplot2, gridExtra, glmmTMB, ICS, ICSOutlier, lavaan,
lme4, loo, Matrix, MASS, metafor, mlogit, nlme, ordinal,
parallel, parameters, pscl, psych, randomForest, rmarkdown,
rstanarm, rstantools, see, survey, survival, testthat, tweedie,
VGAM, spelling
AER, BayesFactor, betareg, bigutilsr, brms, car, covr, cplm,
dbscan, fixest, forecast, ggplot2, gridExtra, glmmTMB, ICS,
ICSOutlier, lavaan, lme4, loo, Matrix, MASS, metafor, mlogit,
nlme, ordinal, parallel, parameters, pscl, psych, randomForest,
rmarkdown, rstanarm, rstantools, see, survey, survival,
testthat, tweedie, VGAM, spelling
AER, BayesFactor, betareg, bigutilsr, brms, car, correlation,
covr, cplm, dbscan, fixest, forecast, ggplot2, gridExtra,
glmmTMB, ICS, ICSOutlier, lavaan, lme4, loo, Matrix, MASS,
metafor, mlogit, nlme, ordinal, parallel, parameters, pscl,
psych, randomForest, rmarkdown, rstanarm, rstantools, see,
survey, survival, testthat, tweedie, VGAM, spelling
AER, BayesFactor, betareg, bigutilsr, brms, car,
CompQuadForm, correlation, covr, cplm, dbscan, fixest,
forecast, ggplot2, gridExtra, glmmTMB, ICS, ICSOutlier, lavaan,
lme4, lmtest, loo, Matrix, MASS, metafor, mgcv, mlogit, nlme,
nonnest2, ordinal, parallel, parameters, pscl, psych,
randomForest, rmarkdown, rstanarm, rstantools, sandwich, see,
survey, survival, testthat, tweedie, VGAM, spelling
AER, BayesFactor, betareg, bigutilsr, brms, car,
CompQuadForm, correlation, cplm, dbscan, fixest, forecast,
gamm4, ggplot2, glmmTMB, gridExtra, ICS, ICSOutlier, ISLR,
lavaan, lme4, lmtest, loo, magrittr, MASS, Matrix, metafor,
mgcv, mlogit, nlme, nonnest2, ordinal, parallel, parameters,
pscl, psych, randomForest, rmarkdown, rstanarm, rstantools,
sandwich, see, spelling, survey, survival, testthat, tweedie,
VGAM
AER, afex, BayesFactor, betareg, bigutilsr, brms, car,
CompQuadForm, correlation, cplm, dbscan, fixest, forecast,
gamm4, ggplot2, glmmTMB, gridExtra, ICS, ICSOutlier, ISLR,
lavaan, lme4, lmtest, loo, magrittr, MASS, Matrix, metafor,
mgcv, mlogit, nlme, nonnest2, ordinal, parallel, parameters,
pscl, psych, randomForest, rmarkdown, rstanarm, rstantools,
sandwich, see, spelling, survey, survival, testthat, tweedie,
VGAM
AER, afex, BayesFactor, betareg, bigutilsr, brms, car,
CompQuadForm, correlation, cplm, dbscan, dplyr, fixest,
forecast, gamm4, ggplot2, glmmTMB, ICS, ICSOutlier, ISLR,
lavaan, lme4, lmtest, loo, magrittr, MASS, Matrix, metafor,
mgcv, mlogit, nlme, nonnest2, ordinal, parallel, parameters,
patchwork, pscl, psych, randomForest, rmarkdown, rstanarm,
rstantools, sandwich, see, spelling, survey, survival,
testthat, tweedie, VGAM
AER, afex, BayesFactor, betareg, bigutilsr, brms, car,
CompQuadForm, correlation, cplm, dbscan, dplyr, fixest,
forecast, gamm4, ggplot2, glmmTMB, ICS, ICSOutlier, ISLR,
lavaan, lme4, lmtest, loo, magrittr, MASS, Matrix, mclust,
metafor, mgcv, mlogit, multimode, nlme, nonnest2, ordinal,
parallel, parameters, patchwork, pscl, psych, randomForest,
rmarkdown, rstanarm, rstantools, sandwich, see, spelling,
survey, survival, testthat, tweedie, VGAM
AER, afex, BayesFactor, bayesplot, betareg, bigutilsr,
blavaan, brms, car, CompQuadForm, correlation, cplm, dbscan,
fixest, forecast, gamm4, ggplot2, glmmTMB, httr, ICS,
ICSOutlier, ISLR, lavaan, lme4, lmtest, loo, magrittr, MASS,
Matrix, mclust, metafor, mgcv, mlogit, multimode, nlme,
nonnest2, ordinal, parallel, parameters, patchwork, poorman,
pscl, psych, randomForest, rmarkdown, rstanarm, rstantools,
sandwich, see, spelling, survey, survival, testthat, tweedie,
VGAM
AER, afex, BayesFactor, bayesplot, betareg, bigutilsr,
blavaan, brms, car, CompQuadForm, correlation, cplm, dbscan,
fixest, forecast, gamm4, ggplot2, glmmTMB, httr, ICS,
ICSOutlier, ISLR, lavaan, lme4, lmtest, loo, magrittr, MASS,
Matrix, mclust, metafor, mgcv, mlogit, multimode, nlme,
nonnest2, ordinal, parallel, parameters, patchwork, poorman,
pscl, psych, randomForest, rmarkdown, rstanarm, rstantools,
sandwich, see, survey, survival, testthat, tweedie, VGAM
knitr, rmarkdown, devtools, e1071, DMwR, randomForest,
quantmod, nnet, mlbench, MASS
knitr, gclus, dendextend, dendextendRcpp, Matrix, rmarkdown,
grDevices
knitr, rmarkdown, testthat, openxlsx (>= 3.0)
knitr, rmarkdown, testthat, shinydashboardPlus, canvasXpress,
openxlsx (>= 3.0)
knitr, rmarkdown, shinydashboardPlus, testthat (>= 3.0),
canvasXpress, openxlsx (>= 3.0)
knitr, rmarkdown, shinydashboardPlus, testthat (>= 3.0),
canvasXpress, openxlsx (>= 3.0), colourpicker
knitr, rmarkdown, scales (>= 0.5.0), testthat
vegan (>= 2.0-0), testthat (>= 0.5), parallel
vegan (>= 2.0-0), testthat (>= 0.5), parallel, knitr,
rmarkdown, bookdown, sessioninfo
doParallel, dplyr, tidyr, knitr, rmarkdown
buildmer (>= 1.7.1), car, doParallel, dplyr, ggplot2, lmPerm,
lme4, permuco, pbkrtest, tidyr, knitr, rmarkdown, viridis
buildmer (>= 1.7.1), car, doParallel, dplyr, ggplot2, lmPerm,
lme4, permuco, knitr, rmarkdown, viridis
buildmer (>= 2.3), car, doParallel, ggplot2, glmmTMB, knitr,
lme4, lmPerm, permuco, rmarkdown, viridis
knitr, mockr, rmarkdown, roxygen2, testthat
testthat, mockery, knitr, rmarkdown, covr
testthat (>= 3.0.0), starsExtra, raster, terra, covr, knitr,
rmarkdown, microbenchmark, stars
maptools, splancs, spdep, sp, gstat, boot, nlme
boot, gstat, maptools, MASS, nlme, sp, spdep, splancs
boot, gstat, maptools, MASS, nlme, rgdal, sp, spdep, splancs
knitr, devtools, ellipsis (>= 0.3.2), roxygen2
parallel, seqLogo, rgl, seqinr, xtable, flashClust
parallel, seqLogo, seqinr, xtable, flashClust, phytools
seqLogo, seqinr, xtable, flashClust, rgl, knitr
parallel, rgl, seqLogo, seqinr, xtable, flashClust, phytools
testthat, seqLogo, seqinr, xtable, flashClust, rgl, knitr
testthat, seqLogo, seqinr, xtable, flashClust, rgl, knitr,
msa
testthat, seqLogo, seqinr, xtable, flashClust, rgl, knitr,
rmarkdown, Biostrings
Biostrings, knitr, magick, prettydoc, rgl, rmarkdown, seqinr,
seqLogo, tinytest, xtable
testthat, seqinr, xtable, rgl, knitr, rmarkdown, Biostrings
testthat, vdiffr, seqinr, xtable, rgl, knitr, rmarkdown,
Biostrings
tinytest, seqinr, xtable, rgl, prettydoc, knitr, rmarkdown,
magick, seqLogo, Biostrings
covr, testthat, knitr, rmarkdown, shinydashboard, leaflet,
plotly, DT
shiny, covr, testthat, knitr, rmarkdown, shinydashboard,
leaflet, plotly, DT
knitr, rmarkdown, reshape2, spam, testthat (>= 2.1.0)
shiny, fields, progress, car, MultiRNG, nlWaldTest
shiny, fields, progress, car, MultiRNG, nlWaldTest, pbapply
shiny, fields, progress, car, MultiRNG, nlWaldTest, pbapply,
cranlogs
doParallel (>= 1.0.17), knitr, rmarkdown, testthat (>=
3.1.0), qs (>= 0.25.2)
knitr, rmarkdown, lme4 (>= 1.0), testthat (>= 2.1.0)
knitr, dplyr, tidyr, DT, lingtypology, testthat
knitr, tidyverse, tidyr, dplyr, DT, lingtypology, testthat,
readxl
testthat, knitr, rmarkdown, microbenchmark, readr, ggplot2
testthat, knitr, markdown, rmarkdown, devtools
knitr (>= 1.17), rmarkdown (>= 1.8), ggplot2 (>= 2.2.1),
ggspectra (>= 0.2.3), photobiologyWavebands (>= 0.4.2)
knitr (>= 1.23), rmarkdown (>= 1.13), ggplot2 (>= 3.1.1),
ggspectra (>= 0.3.4), photobiologyWavebands (>= 0.4.3)
knitr (>= 1.28), rmarkdown (>= 2.1), ggplot2 (>= 3.3.0),
ggspectra (>= 0.3.6), photobiologyWavebands (>= 0.4.3)
knitr (>= 1.30), rmarkdown (>= 2.3), ggplot2 (>= 3.3.2),
ggspectra (>= 0.3.6), photobiologyWavebands (>= 0.4.4)
knitr (>= 1.20), rmarkdown (>= 1.9), ggplot2 (>= 2.2.1),
ggspectra (>= 0.2.3), photobiologyWavebands (>= 0.4.2),
testthat (>= 2.0.0)
knitr (>= 1.20), rmarkdown (>= 1.10), ggplot2 (>= 2.2.1),
ggspectra (>= 0.2.4), photobiologyWavebands (>= 0.4.2),
testthat (>= 2.0.0)
knitr (>= 1.14), photobiologyWavebands (>= 0.4.1), ggspectra
(>= 0.1.10), ggplot2 (>= 2.1.0)
knitr (>= 1.17), photobiologyWavebands (>= 0.4.2), ggspectra
(>= 0.2.2), ggplot2 (>= 2.2.1)
photobiologyWavebands (>= 0.4.5), ggspectra (>= 0.3.8), knitr
(>= 1.37), rmarkdown (>= 2.13)
photobiologyWavebands (>= 0.4.5), photobiologyLamps (>=
0.5.0), ggspectra (>= 0.3.8), knitr (>= 1.37), rmarkdown (>=
2.13)
knitr (>= 1.14), ggspectra (>= 0.1.10), photobiologyWavebands
(>= 0.4.1), ggplot2 (>= 2.1.0)
knitr (>= 1.19), ggspectra (>= 0.2.3), photobiologyWavebands
(>= 0.4.2), ggplot2 (>= 2.2.1)
knitr (>= 1.23), rmarkdown (>= 1.13), ggspectra (>= 0.3.3),
photobiologyWavebands (>= 0.4.3), ggplot2 (>= 3.1.1)
knitr (>= 1.37), rmarkdown (>= 2.12), ggspectra (>= 0.3.7),
photobiologyWavebands (>= 0.4.5), ggplot2 (>= 3.3.5)
knitr (>= 1.37), rmarkdown (>= 2.12), ggspectra (>= 0.3.7),
photobiologyWavebands (>= 0.4.5), ggplot2 (>= 3.3.5),
photobiologyLEDs
knitr (>= 1.19), photobiologyWavebands (>= 0.4.2), ggspectra
(>= 0.2.2), ggplot2 (>= 2.2.1)
knitr (>= 1.29), rmarkdown (>= 2.4), photobiologyWavebands
(>= 0.4.4), ggspectra (>= 0.3.6), ggplot2 (>= 3.3.2)
knitr (>= 0.1.19), rmarkdown (>= 1.8), photobiologyWavebands
(>= 0.4.2), ggplot2 (>= 2.2.1), ggspectra (>= 0.2.3), lubridate
(>= 1.7.2)
ggplot2, knitr, rmarkdown, tidyr, testthat
future, testthat, knitr, rmarkdown, tidyr
future, testthat, knitr, rmarkdown, tidyr, tidyselect
brms, broom, future, knitr, rmarkdown, testthat, tidyr,
tidyselect
coda, phytools, OutbreakTools, testthat, knitr, rmarkdown
tinytest, knitr, rmarkdown, mapproj, survival, gbm, rJava
testthat, pez, tidyr, knitr, rmarkdown, covr, picante,
rbenchmark, INLA, MCMCglmm, logistf, phylolm
testthat, pez, knitr, rmarkdown, covr, picante, rbenchmark,
INLA, MCMCglmm, logistf, phylolm, ggplot2, ggridges, DHARMa,
rr2
childsds, dplyr, ggplot2, magrittr, reshape2, rmarkdown,
testthat, knitr, rvest, spelling, xml2, covr
childsds, dplyr, ggplot2, lintr, magrittr, rmarkdown,
testthat, knitr, spelling, tidyr, utils
multtest, numDeriv, limSolve (>= 1.5.2), Matrix (>=
0.999375-43), rgl, scatterplot3d, qvalue, Iso(>= 0.0-5),
quadprog (>= 1.5-3), kernlab, LowRankQP
multtest, numDeriv, limSolve (>= 1.5.2), Matrix (>=
0.999375-43), rgl, scatterplot3d, qvalue, Iso(>= 0.0-5),
quadprog (>= 1.5-3), kernlab, LowRankQP, limma, OCplus
testthat, devtools, foreach, doParallel, hdrcde, rfinterval,
ranger
rmarkdown, knitr, testthat (>= 3.0.0), dplyr
brglm, circular, corpcor, quantreg, plotrix
animation (>= 2.7), ggplot2, gifski, gridpattern, magick,
rayrender (>= 0.5.8), rayvertex (>= 0.3.3), readobj (>= 0.4.0),
rgl (>= 0.106.8), systemfonts, testthat, tweenr, vdiffr
animation (>= 2.7), ggplot2, gifski, gridpattern, magick,
rayrender (>= 0.5.8), rayvertex (>= 0.3.3), readobj (>= 0.4.0),
rgl (>= 0.106.8), scales (>= 0.5.0), systemfonts, testthat,
tweenr, vdiffr, XML (>= 3.99-0.9)
animation (>= 2.7), ggplot2, gifski, gridpattern, magick,
rayrender (>= 0.28.8), rayvertex (>= 0.3.3), readobj (>=
0.4.0), rgl (>= 0.106.8), scales (>= 0.5.0), systemfonts,
testthat, tweenr, vdiffr, XML (>= 3.99-0.9)
magick, rayrender (>= 0.5.8), rgl (>= 0.100.46), testthat,
vdiffr
magick, rayrender (>= 0.5.8), rgl (>= 0.106.8), testthat,
vdiffr
ggplot2, gridpattern, magick, rayrender (>= 0.5.8), readobj
(>= 0.4.0), rgl (>= 0.106.8), systemfonts, testthat, vdiffr
ggplot2, gridpattern, magick, rayrender (>= 0.5.8), rayvertex
(>= 0.3.3), readobj (>= 0.4.0), rgl (>= 0.106.8), systemfonts,
testthat, vdiffr
spelling, readr, covr, testthat, datasets, knitr, rmarkdown
spelling, readr, covr, testthat, gert, datasets, knitr,
rmarkdown, usethis
spelling, readr, covr, testthat, gert, datasets, knitr,
rmarkdown, usethis, magrittr
spelling, readr, covr, testthat, knitr, rmarkdown, gert,
withr, magrittr
knitr (>= 1.19), lubridate, testthat (>= 2.0.0)
knitr (>= 1.19), lubridate, testthat (>= 2.0.0), withr
knitr, lubridate, testthat (>= 2.0.0), withr
bit64, knitr, lubridate, testthat (>= 2.0.0), withr
bit64, debugme, DiagrammeR, knitr, lubridate, nycflights13,
rmarkdown, survival, testthat (>= 3.0.2), tibble, withr
bit64, debugme, DiagrammeR, knitr, lubridate, nycflights13,
palmerpenguins, rmarkdown, survival, testthat (>= 3.0.2),
tibble, withr
bit64, debugme, DiagrammeR, dplyr, ggplot2, knitr, lubridate,
nycflights13, palmerpenguins, rmarkdown, scales, stringi,
survival, testthat (>= 3.0.2), tibble, withr
bit64, debugme, DiagrammeR, dplyr, formattable, ggplot2,
knitr, lubridate, nycflights13, palmerpenguins, rmarkdown,
scales, stringi, survival, testthat (>= 3.0.2), tibble, units,
withr
bit64, debugme, DiagrammeR, dplyr, formattable, ggplot2,
knitr, lubridate, nycflights13, palmerpenguins, rmarkdown,
scales, stringi, survival, testthat (>= 3.0.2), tibble, units
(>= 0.7.2), withr
bit64, debugme, DiagrammeR, dplyr, formattable, ggplot2,
knitr, lubridate, nanotime, nycflights13, palmerpenguins,
rmarkdown, scales, stringi, survival, testthat (>= 3.1.1),
tibble, units (>= 0.7.2), vdiffr, withr
devtools, kableExtra, knitr, lubridate, rmarkdown,
rnaturalearthdata, sf, tidyverse, testthat
callr, covr, data.table, knitr, rmarkdown, R6, tibble,
testthat, xml2
callr, covr, data.table, knitr, rmarkdown, R6, stringi,
tibble, testthat, xml2
Microsoft365R, AzureStor, data.table, datasets, knitr,
mockery, paws.storage, qs, R.utils, rmarkdown, rsconnect,
shiny, testthat (>= 3.0.0), xml2
AzureStor, data.table, datasets, gitcreds, knitr,
Microsoft365R, mockery, paws.storage, qs, R.utils, rmarkdown,
rsconnect, shiny, testthat (>= 3.0.0), xml2
arrow, AzureStor, data.table, datasets, gitcreds, knitr,
Microsoft365R, mockery, paws.storage, qs, R.utils, rmarkdown,
rsconnect, shiny, testthat (>= 3.0.0), xml2
knitr, testthat, rmarkdown, modelr, tidyverse
devtools, dplyr, ggplot2, knitr, lintr, markdown, nLTT (>=
1.4.3), rmarkdown, Rmpfr, testthat (>= 2.1.0)
devtools, dplyr, ggplot2, knitr, lintr, markdown, nLTT (>=
1.4.3), rappdirs, rmarkdown, Rmpfr, testthat (>= 2.1.0)
DBI, dplyr, RSQLite, RSQLite.extfuns, parallel, knitr,
animation, shiny, ggsubplot
DBI, dplyr, RSQLite, RSQLite.extfuns, parallel, knitr,
animation, shiny, testthat, ggsubplot, rgl
DBI, dplyr, RSQLite (>= 1.0.0), parallel, knitr, animation,
shiny, testthat, ggsubplot, rgl
covr, httptest (>= 3.0.0), knitr, magrittr, spelling
httptest (>= 3.0.0), knitr, magrittr, rmarkdown, spelling
lubridate (>= 1.5.0), listviewer (>= 1.4.0), digest (>=
0.6.9), shiny, knitr, rmarkdown, testthat
lubridate (>= 1.5.0), listviewer (>= 1.4.0), shiny, knitr,
rmarkdown, testthat
ggplot2 (>= 2.2.0), lubridate (>= 1.5.0), listviewer (>=
1.4.0), shiny, knitr, rmarkdown, testthat
ggplot2 (>= 2.2.0), lubridate (>= 1.5.0), listviewer (>=
1.4.0), openxlsx (>= 4.0.17), shiny, knitr, rmarkdown, testthat
ggplot2 (>= 2.2.0), lubridate (>= 1.5.0), listviewer (>=
1.4.0), openxlsx (>= 4.0.17), basictabler (>= 0.2.0), shiny,
knitr, rmarkdown, testthat
ggplot2 (>= 2.2.0), jsonlite (>= 1.1), lubridate (>= 1.5.0),
listviewer (>= 1.4.0), openxlsx (>= 4.0.17), basictabler (>=
0.2.0), shiny, knitr, rmarkdown, testthat
ggplot2 (>= 2.2.0), jsonlite (>= 1.1), lubridate (>= 1.5.0),
listviewer (>= 1.4.0), openxlsx (>= 4.0.17), basictabler (>=
1.0.2), shiny, knitr, rmarkdown, testthat
testthat, spelling, knitr, rmarkdown, dplyr, tidyr, forcats,
ggplot2, ggrepel, ggbeeswarm
dplyr, forcats, ggbeeswarm, ggplot2, ggrepel, irr, knitr,
markdown, rmarkdown, spelling, testthat (>= 3.0.0), tidyr
covr, cpp11, knitr, mockery, Rcpp, rmarkdown, testthat (>=
3.0.0)
callr, covr, debugme, desc, fs, jsonlite, mockery, pingr,
rprojroot, testthat,
covr, debugme, desc, fs, jsonlite, mockery, pingr, rprojroot,
testthat, withr
covr, debugme, desc, fs, jsonlite, mockery, pingr, presser,
rprojroot, sessioninfo, testthat, withr
covr, debugme, desc, fs, mockery, pingr, webfakes, rprojroot,
sessioninfo, testthat, withr
covr, debugme, desc, fs, mockery, pingr, rprojroot,
sessioninfo, testthat, withr
covr, debugme, desc, fs, mockery, pingr, rprojroot,
sessioninfo, testthat, webfakes, withr
covr, debugme, desc, fs, mockery, pingr, rprojroot,
sessioninfo, spelling, testthat, webfakes, withr
covr, debugme, desc, fs, mockery, pillar, pingr, rprojroot,
sessioninfo, spelling, testthat, webfakes, withr
covr, debugme, desc, fs, mockery, pillar, pingr, rprojroot,
sessioninfo, spelling, testthat (>= 3.0.0), webfakes, withr
covr, debugme, desc, fs, mockery, pillar, pingr, rprojroot,
sessioninfo, spelling, testthat (>= 3.0.0), webfakes (>=
1.1.5), withr, zip
asciicast, debugme, digest, fansi, fs, htmlwidgets, mockery,
pingr (>= 2.0.0), rlang, rstudioapi, spelling, testthat,
webfakes
asciicast, debugme, digest, fansi, fs, htmlwidgets, mockery,
pingr (>= 2.0.0), rlang, rmarkdown, rstudioapi, spelling,
testthat, webfakes
asciicast, debugme, digest, fansi, fs, htmlwidgets, mockery,
pingr (>= 2.0.0), rmarkdown, rstudioapi, spelling, testthat,
tibble, webfakes
asciicast, covr, debugme, digest, fansi, fs, htmlwidgets,
mockery, pingr (>= 2.0.0), rmarkdown, rstudioapi, spelling,
testthat, tibble, webfakes
covr, debugme, digest, fansi, fs, htmlwidgets, mockery, pingr
(>= 2.0.0), rmarkdown, rstudioapi, spelling, testthat, tibble,
webfakes
BiocInstaller, covr, jsonlite, knitr, magick, testthat
BiocInstaller, covr, htmlwidgets, jsonlite, knitr, leaflet,
magick, testthat
covr, devtools, htmlwidgets, jsonlite, knitr, leaflet,
testthat, rticles
covr, htmlwidgets, jsonlite, knitr, leaflet, pkgload (>=
1.0.2), testthat (>= 2.1.0), rticles, rsconnect
covr, htmlwidgets, jsonlite, knitr, leaflet, pkgload (>=
1.0.2), testthat (>= 2.1.0), rticles, rsconnect, rstudioapi
covr, diffviewer, evaluate, htmltools, htmlwidgets, knitr,
lifecycle, methods, openssl, pkgload (>= 1.0.2), rsconnect,
rstudioapi, rticles, sass, testthat (>= 3.0.0), tools
covr, diffviewer, evaluate, htmltools, htmlwidgets, knitr,
lifecycle, methods, openssl, pkgload (>= 1.0.2), rsconnect,
rstudioapi, rticles, sass, testthat (>= 3.1.3), tools
bitops, covr, mathjaxr, pak, pkgbuild, Rcpp, remotes,
rstudioapi, testthat (>= 3.1.0)
bitops, covr, mathjaxr, mockr, pak, pkgbuild, Rcpp, remotes,
rstudioapi, testthat (>= 3.1.0)
registry, devtools (>= 0.8), bibtex, RUnit, testthat, knitr
devtools (>= 0.8), bibtex, RUnit, testthat, knitr
devtools (>= 0.8), bibtex, RUnit, testthat, knitr, argparse
devtools (>= 0.8), bibtex, RUnit, testthat, knitr,
ReportingTools, hwriter, argparse
devtools (>= 0.8), roxygen2, RUnit, testthat, knitr,
rmarkdown, yaml, Biobase
devtools (>= 0.8), roxygen2, RUnit, testthat, knitr,
rmarkdown, yaml, Biobase, datasets
devtools (>= 0.8), roxygen2, RUnit, testthat, knitr,
rmarkdown, markdown, yaml, Biobase, datasets, rbibutils (>=
1.3)
registry, devtools, bibtex, RUnit, testthat
registry, devtools, bibtex, RUnit, testthat, knitr
registry, devtools (>= 0.7.1), bibtex, RUnit, testthat, knitr
knitr, rmarkdown, svglite, callr, rjson, Rook, igraph,
ggplot2, ggrepel
knitr, rmarkdown, svglite, callr, rjson, Rook, igraph,
ggplot2, ggrepel, base64, testthat, cowplot
devtools, ggplot2, testthat, webshot, withr
ggplot2, pkgdown, testthat, webshot, withr
covr, miniUI, memoise, pingr (>= 2.0.0), rstudioapi, shiny,
shinyjs, shinyWidgets, testthat (>= 2.1.0), whoami
covr, memoise, pingr (>= 2.0.0), rstudioapi, shiny, shinyjs,
shinyWidgets, testthat (>= 2.1.0), whoami
mockery, covr, memoise, pingr (>= 2.0.0), rstudioapi, shiny,
shinyjs, shinyWidgets, testthat (>= 2.1.0), whoami
mockery, covr, memoise, pillar, pingr (>= 2.0.0), rstudioapi,
shiny, shinyjs, shinyWidgets, testthat (>= 2.1.0), whoami
curl, hms, jsonlite, knitr, parallel, pkgbuild, Rcpp,
rmarkdown, roxygen2, testthat (>= 3.0.0), visNetwork
curl, hms, jsonlite, knitr, parallel, pkgbuild, Rcpp,
rmarkdown, roxygen2, testthat (>= 3.0.0), tibble, visNetwork
covr, knitr, rmarkdown, testthat, viridis
ggplot2, Hmisc, dielectric, gridExtra, lattice
ggplot2, plyr, Hmisc, dielectric, gridExtra, lattice
ggplot2, Hmisc, grid, gridExtra, lattice, knitr, testthat
Hmisc, grid, gridExtra, lattice, knitr, testthat
nlstools, testthat, knitr, rmarkdown, DT
dplyr, ggplot2, knitr, purrr, rmarkdown, testthat
hexbin, deldir, tripack, zoo, MASS, DAAG, ggplot2
testthat, knitr, rmarkdown, markdown, vcr
testthat, mockery, formatR, knitr, rmarkdown
AER, car, pcse, clusterSEs, clubSandwich, pglm, spdep, splm,
statmod, Ecdat, pder, stargazer, texreg, foreign
AER, car, pcse, clusterSEs, clubSandwich, pglm, spdep, splm,
statmod, Ecdat, pder, stargazer, texreg, foreign, knitr,
rmarkdown, bookdown
AER, car, pcse, clusterSEs, clubSandwich, pglm, spdep, splm,
statmod, urca, Ecdat, pder, stargazer, texreg, foreign, knitr,
rmarkdown, bookdown
AER, car, pcse, clusterSEs, pglm, spdep, splm, statmod, urca,
Ecdat, pder, stargazer, texreg, foreign, knitr, rmarkdown,
bookdown
AER, car, pcse, clusterSEs, collapse, pglm, spdep, splm,
statmod, urca, Ecdat, pder, stargazer, texreg, foreign, knitr,
rmarkdown, bookdown
AER, car, pcse, clusterSEs, collapse (>= 1.6.0), pglm, spdep,
splm, statmod, urca, Ecdat, pder, stargazer, texreg, foreign,
knitr, rmarkdown, bookdown, fixest, lfe
AER, car, statmod, urca, pder, texreg, knitr, rmarkdown,
fixest, lfe
testthat, knitr, rmarkdown, progressr, ggplot2, readxl,
magrittr
MASS (>= 7.3-51), mlogit, nnet, knitr, rmarkdown
knitr, MASS (>= 7.3-51), mlogit, nnet, rmarkdown, VGAM
knitr, MASS (>= 7.3-51), mlogit, nnet, ordinal, rmarkdown,
VGAM, testthat
testthat, vdiffr, arm (>= 1.10.1), covr, knitr, rmarkdown
testthat, knitr, markdown, R.utils, covr, depmixS4,
data.table, ggplot2, neuroblastoma, microbenchmark
utils, maptools, fossil, spcosa, zoo, rjson, animation,
spatstat, RSAGA, RCurl, rgbif
utils, maptools, fossil, spcosa, zoo, rjson, animation,
spatstat, RSAGA, RCurl, rgbif, GSIF
utils, adehabitat, maptools, fossil, spcosa, rjson,
animation, gstat, spatstat, RSAGA, RCurl, rgbif
utils, adehabitat, maptools, fossil, spcosa, rjson,
animation, gstat, spatstat, RCurl, rgbif
utils, adehabitat, maptools, fossil, spcosa, rjson,
animation, gstat, spatstat, RCurl, rgbif, GSIF
utils, adehabitat, maptools, fossil, spcosa, rjson,
animation, spatstat, RCurl, rgbif, Hmisc, GSIF
utils, adehabitat, maptools, fossil, spcosa, rjson,
animation, spatstat, RCurl, rgbif, Hmisc, GSIF, stpp
utils, adehabitat, maptools, fossil, spcosa, rjson, RJSONIO,
animation, spatstat, RCurl, rgbif, Hmisc, GSIF, stpp, uuid,
intervals, reshape
utils, adehabitat, maptools, fossil, spcosa, rjson,
animation, spatstat, RCurl, rgbif, Hmisc, GSIF, stpp, uuid,
intervals, reshape
utils, adehabitat, maptools, fossil, spcosa, rjson,
animation, spatstat, RCurl, rgbif, Hmisc, GSIF, stpp, uuid,
intervals, reshape, gdalUtils
utils, adehabitat, maptools, fossil, spcosa, rjson,
animation, spatstat, RCurl, rgbif, Hmisc, GSIF, uuid,
intervals, reshape, gdalUtils
utils, adehabitat, maptools, fossil, spcosa, rjson,
animation, spatstat, RCurl, rgbif, Hmisc, GSIF, uuid,
intervals, reshape, gdalUtils, snowfall, parallel
adehabitat, maptools, fossil, spcosa, rjson, animation,
spatstat, RCurl, rgbif, Hmisc, GSIF, uuid, intervals, reshape,
gdalUtils, snowfall, parallel
adehabitatLT, maptools, fossil, spcosa, rjson, animation,
spatstat, RCurl, rgbif, Hmisc, GSIF, uuid, intervals, reshape,
gdalUtils, snowfall, parallel
adehabitatLT, maptools, fossil, rjson, animation, spatstat,
spatstat.linnet, spatstat.geom, RCurl, rgbif, Hmisc, uuid,
intervals, reshape, gdalUtils, snowfall, parallel, tinytex,
testthat
RSAGA, plotrix, adehabitatLT, maptools, fossil, rjson,
animation, spatstat, spatstat.linnet, spatstat.geom, RCurl,
rgbif, Hmisc, uuid, intervals, reshape, gdalUtils, snowfall,
parallel, testthat
RSAGA, plotrix, adehabitatLT, maptools, fossil, rjson,
animation, spatstat, spatstat.linnet, spatstat.geom, RCurl,
rgbif, Hmisc, uuid, R.utils, intervals, reshape, snowfall,
parallel, testthat
ggthemes, knitr, testthat, stringr, ROCR
knitr, testthat, stringr, survivalROC, rmarkdown
stats, ape, aplot (>= 0.0.8), dplyr, ggplotify (>= 0.1.0),
knitr, rmarkdown, prettydoc
Cairo, knitr, mapdata, rmarkdown, testthat
Cairo, knitr, mapdata, maptools, rgdal, rmarkdown, testthat
testthat, ggplot2movies, mgcv, nlme, knitr, rmarkdown,
gapminder
dplyr, maps, testthat, knitr, devtools, shiny, htmltools,
curl, rmarkdown, RColorBrewer, Rserve, RSclient, broom
dplyr, maps, ggthemes, GGally, testthat, knitr, devtools,
shiny, htmltools, curl, rmarkdown, RColorBrewer, Rserve,
RSclient, broom, hexbin
dplyr, maps, ggthemes, GGally, testthat, knitr, devtools,
shiny, htmltools, curl, rmarkdown, RColorBrewer, Rserve,
RSclient, broom
MASS, maps, hexbin, ggthemes, GGally, testthat, knitr,
devtools, shiny (>= 1.1.0), shinytest (>= 1.3.0), curl,
rmarkdown, Cairo, broom, webshot, listviewer, dendextend,
maptools, rgeos, sf, png, IRdisplay, processx, plotlyGeoAssets,
forcats, palmerpenguins, rversions, reticulate
MASS, maps, hexbin, ggthemes, GGally, ggalluvial, testthat,
knitr, devtools, shiny (>= 1.1.0), shinytest (>= 1.3.0), curl,
rmarkdown, Cairo, broom, webshot, listviewer, dendextend,
maptools, rgeos, sf, png, IRdisplay, processx, plotlyGeoAssets,
forcats, palmerpenguins, rversions, reticulate, rsvg
MASS, maps, ggthemes, GGally, testthat, knitr, devtools,
shiny (>= 0.14), htmltools, curl, rmarkdown, RColorBrewer,
Rserve, RSclient, broom, webshot, listviewer
MASS, maps, ggthemes, GGally, testthat, knitr, devtools,
shiny (>= 0.14), curl, rmarkdown, Rserve, RSclient, Cairo,
broom, webshot, listviewer, dendextend, RSelenium, png,
IRdisplay
MASS, maps, ggthemes, GGally, testthat, knitr, devtools,
shiny (>= 0.14), curl, rmarkdown, Rserve, RSclient, Cairo,
broom, webshot, listviewer, dendextend, sf, RSelenium, png,
IRdisplay
MASS, maps, ggthemes, GGally, testthat, knitr, devtools,
shiny (>= 1.1.0), curl, rmarkdown, Rserve, RSclient, Cairo,
broom, webshot, listviewer, dendextend, sf, maptools, rgeos,
png, IRdisplay, processx, plotlyGeoAssets, forcats
MASS, maps, ggthemes, GGally, testthat, knitr, devtools,
shiny (>= 1.1.0), shinytest (>= 1.3.0), curl, rmarkdown,
vdiffr, Cairo, broom, webshot, listviewer, dendextend, sf,
maptools, rgeos, png, IRdisplay, processx, plotlyGeoAssets,
forcats
MASS, maps, hexbin, ggthemes, GGally, testthat, knitr,
devtools, shiny (>= 1.1.0), shinytest (>= 1.3.0), curl,
rmarkdown, vdiffr, Cairo, broom, webshot, listviewer,
dendextend, sf, maptools, rgeos, png, IRdisplay, processx,
plotlyGeoAssets, forcats, palmerpenguins
mixtools, EMCluster, flexmix, testthat, graphics
mixtools, EMCluster, flexmix, testthat, graphics, dplyr,
patchwork, magrittr, knitr, rmarkdown
earth (>= 4.2.0), MASS, neuralnet, rpart, rpart.plot
earth (>= 4.3.0), MASS, neuralnet, rpart, rpart.plot
bipartite, knitr, markdown, plotrix, pls, plsdof, prettydoc,
rmarkdown
glcoxph, survivalROC, plsRglm, lars, survival, pls
glcoxph, survivalROC, plsRglm, lars, survival, pls, spls,
kernlab, plsRcox, plsdof
glcoxph, survivalROC, plsRglm, lars, survival, pls, spls,
kernlab, plsRcox, plsdof, mixOmics
MASS, plsdof, R.rsp, chemometrics, plsdepot
rmarkdown, covr, modeldata, spelling, testthat (>= 3.0.0)
tidyverse (>= 1.2.1), knitr, rmarkdown, kableExtra
plsdepot, FactoMineR, ggplot2, reshape, testthat, knitr
covr, crayon, fracture, nombre, testthat (>= 3.0.0), withr
testthat (>= 0.11.0), XML, rmarkdown, PKI, base64enc
testthat (>= 0.11.0), XML, rmarkdown, PKI, base64enc,
htmlwidgets, visNetwork, analogsea
testthat (>= 0.11.0), rmarkdown, base64enc, htmlwidgets,
visNetwork, later, readr, yaml, feather, future
testthat (>= 0.11.0), rmarkdown, base64enc, htmlwidgets,
visNetwork, later, readr, yaml, feather, future, rstudioapi,
spelling, mockery (>= 0.4.2)
testthat (>= 0.11.0), rmarkdown, base64enc, htmlwidgets,
visNetwork, later, readr, yaml, arrow, future, coro,
rstudioapi, spelling, mockery (>= 0.4.2), geojsonsf, redoc,
rapidoc, sf
abind, testthat (>= 0.2), tcltk, foreach
abind, testthat (>= 0.2), tcltk, foreach, itertools,
iterators
abind, testthat, tcltk, foreach, doMC, itertools, iterators
abind, testthat, tcltk, foreach, doParallel, itertools,
iterators
abind, testthat, tcltk, foreach, doParallel, itertools,
iterators, covr
abind, covr, doParallel, foreach, iterators, itertools,
tcltk, testthat
abind, testthat (>= 0.2), tcltk, foreach, doMC, itertools,
iterators
covr, roxygen2, testthat, DiagrammeRsvg, rsvg
shiny, DT, covr, styler, lintr, testthat, knitr, rmarkdown,
magrittr
shiny, DT, covr, styler, lintr, testthat, knitr, rmarkdown,
magrittr, tailr (>= 0.1.0)
shiny, DT, covr, styler, lintr, testthat, knitr, rmarkdown,
magrittr, microbenchmark, tailr (>= 0.1.0)
shiny, DT, covr, styler, lintr, testthat, knitr, rmarkdown,
microbenchmark, ggraph, tidygraph, tailr
covr, gridExtra, knitr, testthat, rmarkdown
tsibble, plm, panelr, sjlabelled, knitr, rmarkdown, testthat
(>= 2.1.0), covr
tsibble, plm, panelr, sjlabelled, knitr, rmarkdown, testthat
(>= 2.1.0), covr, haven
tsibble, plm, panelr, haven, utf8, sjlabelled, knitr,
rmarkdown, testthat (>= 2.1.0), covr
nnet, rpart, randomSurvivalForest, randomForest, kernlab
arules, nnet, rpart, randomSurvivalForest, randomForest, kernlab
arules, nnet, rpart, randomSurvivalForest, randomForest,
kernlab
arules, nnet, rpart, randomSurvivalForest, randomForest,
kernlab, survival
nnet, rpart, randomSurvivalForest, randomForest, kernlab,
survival, glmnet, e1071, mlbench, arules
nnet, rpart, randomSurvivalForest, randomForest, kernlab,
glmnet, e1071, mlbench, arules, pmmlTransformations
ada, arules, glmnet, nnet, rpart, randomForestSRC,
randomForest, kernlab, e1071, mlbench, pmmlTransformations
ada, amap, arules, glmnet, nnet, rattle, rpart,
randomForestSRC, randomForest, kernlab, e1071, mlbench,
pmmlTransformations
ada, amap, arules, glmnet, nnet, rpart, randomForestSRC,
randomForest, kernlab, e1071, pmmlTransformations(>=
1.3.0),testthat
ada, amap, arules, gbm, glmnet, neighbr, nnet, rpart,
randomForestSRC, randomForest, kernlab, e1071, testthat,
survival, xgboost, pmmlTransformations(>= 1.3.1)
ada, amap, arules, gbm, glmnet, neighbr, nnet, rpart,
randomForestSRC (<= 2.5.0), randomForest, kernlab, e1071,
testthat, survival, xgboost, pmmlTransformations(>= 1.3.1)
ada, amap, arules, gbm, glmnet, neighbr, nnet, rpart,
randomForestSRC (<= 2.5.0), randomForest, kernlab, e1071,
testthat, survival, xgboost, pmmlTransformations(>= 1.3.1),
knitr, rmarkdown
ada, amap, arules, caret, clue, data.table, gbm, glmnet,
Matrix, neighbr, nnet, rpart, randomForestSRC (<= 2.5.0),
randomForest, kernlab, e1071, testthat, survival, xgboost,
knitr, rmarkdown
ada, amap, arules, caret, clue, data.table, forecast, gbm,
glmnet, Matrix, neighbr, nnet, rpart, randomForestSRC (<=
2.5.0), randomForest, kernlab, e1071, testthat, survival,
xgboost, knitr, rmarkdown, covr
ada, amap, arules, caret, clue, data.table, forecast, gbm,
glmnet, Matrix, neighbr, nnet, rpart, randomForestSRC (<=
2.5.0), randomForest, rattle, kernlab, e1071, testthat,
survival, xgboost, knitr, rmarkdown, covr
ada, amap, arules, caret, clue, data.table, forecast, gbm,
glmnet, Matrix, neighbr, nnet, rpart, randomForest, rattle,
kernlab, e1071, testthat, survival, xgboost, knitr, rmarkdown,
covr, tibble
knitr, testthat, rmarkdown, pmml (<= 1.5.7)
bigrquery (>= 1.3.2), doParallel (>= 1.0.16), RMariaDB (>=
1.0.9), RPostgres (>= 1.2.0), RSQLite (>= 2.2.0), testthat (>=
2.3.2), knitr, rmarkdown
testthat, mockery, covr, httptest, knitr, rmarkdown, ggplot2
arrow, covr, crayon, data.table, duckdb, ggforce, ggplot2,
jsonlite, log4r, lubridate, RSQLite, RMySQL, RPostgres, readr,
rmarkdown, sparklyr, dittodb, odbc
arrow, bigrquery, covr, crayon, data.table, duckdb, ggforce,
ggplot2, jsonlite, log4r, lubridate, RSQLite, RMySQL,
RPostgres, readr, rmarkdown, sparklyr, dittodb, odbc
covr, knitr, lubridate, RSQLite, testthat (>= 2.1.0), readr,
rmarkdown
covr, lubridate, RSQLite, RMariaDB, RPostgres, readr,
rmarkdown
covr, lubridate, RSQLite, RMariaDB, RPostgres, readr,
rmarkdown, sparklyr, dittodb
covr, lubridate, RSQLite, RMariaDB, RPostgres, readr,
rmarkdown, sparklyr, dittodb, odbc
covr, duckdb, lubridate, RSQLite, RMariaDB, RMySQL,
RPostgres, readr, rmarkdown, sparklyr, dittodb, odbc
arrow, covr, crayon, duckdb, ggforce, ggplot2, jsonlite,
log4r, lubridate, RSQLite, RMySQL, RPostgres, readr, rmarkdown,
sparklyr, dittodb, odbc
covr, pscl, spelling, testthat (>= 3.0.0)
pkgcond, knitr, rmarkdown, formattable, utf8, qpdf
hexbin, rgl, scatterplot3d, R2HTML, gdata
testthat (>= 3.0.0), knitr, rmarkdown, config
testthat (>= 3.0.0), knitr, config, xfun
testthat, dplyr, magrittr, tidyr, ggplot2
DTRlearn2, glmnet, mgcv, knitr, ranger, rmarkdown, testthat
(>= 3.0)
covr, ggplot2, knitr, tidyr, rmarkdown, testthat
knitr, dplyr, ggplot2, rmarkdown, testthat
knitr, ggplot2, rmarkdown, testthat, tidyr
jsonlite, knitr, readr, rmarkdown, tidyverse, xml2
dplyr, ggplot2, jsonlite, knitr, readr, rmarkdown, tidyr
polmineR.sampleCorpus, doParallel, markdown, htmltools, xlsx,
sendmailR, koRpus, chron, knitr, bigmemory, bigtabulate, shiny,
miniUI, rJava
polmineR.sampleCorpus, rcqp, doParallel, markdown, htmltools,
xlsx, sendmailR, knitr, bigmemory, bigtabulate, rJava, shiny
parallel, polmineR.sampleCorpus, rcqp, doParallel, markdown,
htmltools, xlsx, sendmailR, knitr, bigmemory, bigtabulate,
rJava, shiny
markdown, rmarkdown, htmltools, openxlsx, sendmailR, shiny,
shinythemes, testthat, tidytext, magrittr
markdown, rmarkdown, htmltools, openxlsx, sendmailR, shiny,
shinythemes, testthat, tidytext, magrittr, covr, igraph
parallel, polmineR.Rcpp, europarl.en, rcqp, doParallel,
markdown, htmltools, xlsx, sendmailR, knitr, bigmemory,
bigtabulate, rJava, shiny
pbapply, parallel, polmineR.Rcpp, europarl.en, rcqp,
doParallel, markdown, htmltools, xml2, xlsx, sendmailR, knitr,
rJava, shiny, testthat
parallel, polmineR.Rcpp, europarl.en, rcqp, doParallel,
markdown, htmltools, xml2, xlsx, sendmailR, knitr, rJava,
shiny, testthat, tidytext
markdown, htmltools, xlsx, sendmailR, knitr, shiny,
shinythemes, testthat, tidytext, magrittr
markdown, rmarkdown, htmltools (>= 0.4.0), openxlsx,
sendmailR, shiny, shinythemes, miniUI, rhandsontable, testthat,
tidytext, covr, igraph, NLP, httr, protolite, curl
markdown, rmarkdown, htmltools (>= 0.4.0), highlight,
sendmailR, shiny, shinythemes, miniUI, rhandsontable, testthat,
tidytext, covr, igraph, NLP, httr, protolite, curl
markdown, rmarkdown, htmltools (>= 0.4.0), highlight,
sendmailR, shiny, shinythemes, shinyjs, miniUI, rhandsontable,
testthat, tidytext, covr, igraph, NLP, httr, protolite, curl
lattice, testthat, mvtnorm, rgeos, gpclib
lattice, testthat, mvtnorm, statmod, rgeos, gpclib
spatstat, lattice, testthat, mvtnorm, statmod, rgeos, gpclib
spatstat, lattice, testthat, mvtnorm, statmod, rgeos, gpclib,
cubature
spatstat, lattice, testthat, mvtnorm, statmod, rgeos, gpclib,
cubature, knitr, rmarkdown, microbenchmark
spatstat.geom, lattice, mvtnorm, statmod, rgeos, gpclib, sf,
cubature, knitr, rmarkdown, microbenchmark
rrBLUP, Rsamtools, GenomeInfoDb, Biostrings, GenomicRanges,
VariantAnnotation, SummarizedExperiment, S4Vectors, IRanges,
BiocGenerics, knitr, rmarkdown, GenomicFeatures
rrBLUP, Rsamtools, GenomeInfoDb, Biostrings, GenomicRanges,
VariantAnnotation, SummarizedExperiment, S4Vectors, IRanges,
BiocGenerics, knitr, rmarkdown, GenomicFeatures, qqman
rrBLUP, Rsamtools, GenomeInfoDb, Biostrings, GenomicRanges,
VariantAnnotation, SummarizedExperiment, S4Vectors, IRanges,
BiocGenerics, knitr, rmarkdown, GenomicFeatures, qqman, ggplot2
rrBLUP, Rsamtools, GenomeInfoDb, Biostrings, GenomicRanges,
VariantAnnotation, SummarizedExperiment, S4Vectors, IRanges,
BiocGenerics, knitr, rmarkdown, GenomicFeatures, qqman,
ggplot2, adegenet
rrBLUP, Rsamtools, GenomeInfoDb, Biostrings, GenomicRanges,
VariantAnnotation, SummarizedExperiment, S4Vectors, IRanges,
BiocGenerics, knitr, rmarkdown, GenomicFeatures, ggplot2,
adegenet
rmarkdown, Hmisc, LPmerge, NMF, reshape2, RColorBrewer
rmarkdown, Hmisc, LPmerge, reshape2, RColorBrewer
rmarkdown, Hmisc, LPmerge, reshape2, RColorBrewer, hexbin
ggplot2, hexbin, Hmisc, RColorBrewer, reshape2, rmarkdown
ggplot2, hexbin, Hmisc, RColorBrewer, reshape2, rmarkdown,
polyRAD, updog
ggplot2, hexbin, Hmisc, RColorBrewer, reshape2, rmarkdown,
polyRAD, updog, mappoly
testthat, knitr, rmarkdown, lme4, splines
igraph, mappoly (>= 0.3.0), polymapR, rmarkdown
knitr, rmarkdown, testthat, Ternary, visNetwork, sarsop
magrittr, plyr, reshape2, ggplot2, knitr
ggplot2, knitr, tidyr, dplyr, subplex, nloptr
testthat, tibble, dplyr, dbplyr, RSQLite, RMySQL
knitr, pkgdown, rmarkdown, roxygen2, tinytest
knitr, pkgdown, markdown, rmarkdown, roxygen2, tinytest
reshape2, methods, testthat, knitr, survival, relsurv,
ggplot2, mstate, date, splines
reshape2, methods, testthat, knitr, rmarkdown, relsurv,
ggplot2, mstate, date, splines, roxygen2
covr, date, knitr, mstate, relsurv, rmarkdown, roxygen2,
testthat
reshape2, methods, testthat, knitr, rmarkdown, relsurv,
ggplot2, mstate, date, splines, roxygen2, covr
BEDMatrix, testthat, knitr, rmarkdown, lfa
BEDMatrix, testthat, knitr, rmarkdown, lfa, bnpsd
testthat, knitr, rmarkdown, knitcitations, polysat, poweRlaw,
cowplot
testthat, knitr, rmarkdown, knitcitations, poweRlaw, cowplot
testthat, knitr, rmarkdown, knitcitations, poweRlaw, cowplot,
RClone
testthat, knitr, rmarkdown, poweRlaw, cowplot, RClone
httptest, digest, tidyverse, cowplot, knitr, rmarkdown
httptest, digest, tidyverse, cowplot, knitr, rmarkdown,
pkgdown, covr
httptest, tidyverse, cowplot, knitr, rmarkdown, pkgdown,
covr, ggplot2, testthat
httptest, cowplot, knitr, rmarkdown, pkgdown, covr, ggplot2,
testthat
covr, cowplot, ggplot2, httptest, knitr, pkgdown, rmarkdown,
testthat
covr, cowplot, ggplot2, httptest, knitr, pkgdown, rmarkdown,
testthat, usethis
fGarch, FitAR, FGN, TSA, vars, tseries, forecast, akima
fGarch, fracdiff, FitAR, FGN, TSA, vars, tseries, forecast,
akima, gstat
akima, car, fGarch, FitAR, fracdiff, gstat, TSA, tseries,
vars
akima, car, fGarch, FitAR, fracdiff, gstat, tseries, vars
CVXR, DT, ggplot2, gridExtra, knitr, prettydoc, readtext,
rmarkdown, R.rsp, stringi, testthat
CVXR, DT, gridExtra, knitr, prettydoc, readtext, rmarkdown,
R.rsp, rlang, stringi, testthat
CVXR, DT, ggfortify, gridExtra, knitr, prettydoc, readtext,
rmarkdown, R.rsp, stringi, testthat
CVXR, DT, ggfortify, gridExtra, knitr, prettydoc, readtext,
rmarkdown, R.rsp, scales, stringi, testthat
covr, future, ggplot2, ggtext, knitr, patchwork, rmarkdown,
scales, testthat (>= 3.0.0)
xtable, lme4, nlme, testthat, knitr, rmarkdown
covr, cowsay, ggplot2, here, knitr, maps, rmarkdown, stats,
testthat, zipcode
covr, cowsay, ggplot2, here, knitr, maps, rmarkdown,
testthat, zipcode
topGO, GOSim, parallel, VariantAnnotation, Rsamtools,
org.Mm.eg.db, xtable, genetics
covr, lwgeom, cartography, knitr, tinytest, rmarkdown
covr, lwgeom, eurostat, giscoR, mapsf, knitr, tinytest,
rmarkdown
testthat (>= 2.1.0), assertthat, knitr, rmarkdown, forcats,
scales
testthat (>= 2.1.0), assertthat, knitr, rmarkdown, forcats,
scales, ggthemes, ggplot2, utf8, httptest
knitr, R.matlab, testthat, codetools, covr
codetools, covr, knitr, R.matlab, testthat
testthat, spelling, knitr, rmarkdown, covr
dplyr, tidyr, knitr, rmarkdown, viridis, shiny (>= 1.0),
shinydashboard
testthat, dplyr, tidyr, knitr, rmarkdown, pbmcapply (>= 1.1),
lmerTest (>= 2.0), ggplot2 (>= 2.2), ggsci, viridis, gridExtra,
shiny (>= 1.0), shinydashboard
cluster, factoextra, fclust, knitr, MASS, rmarkdown, vegclust
cluster, factoextra, fclust, knitr, rmarkdown, vegclust
testthat, covr, spelling, stringr, readxl
covr, gt, knitr, rmarkdown, spelling, testthat (>= 3.0.0),
vdiffr
mclust, spdep, tripack, maptools, foreign, SparseM, mvtnorm
mclust, spdep, maptools, foreign, mvtnorm
spatialreg, spdep, maptools, foreign, mvtnorm
spdep, spatialreg, bootstrap, maptools, foreign, mvtnorm
akima, grid, foreach, testthat, mlbench, datasets
akima, datasets, doParallel, foreach, glmertree, grid,
mlbench, testthat
akima, datasets, doParallel, foreach, glmertree, grid,
mlbench, testthat, mboost
akima, datasets, doParallel, foreach, glmertree, grid,
mlbench, testthat, mboost, ggplot2, caret, pROC, knitr,
rmarkdown, mice
interp, datasets, doParallel, foreach, glmertree, grid,
mlbench, testthat, mboost, ggplot2, caret, pROC, knitr,
rmarkdown, mice
knitr, rmarkdown, bookdown, tufte, kableExtra, testthat
rmarkdown, bookdown, tufte, testthat, lattice, latticeExtra
rmarkdown, bookdown, tufte, testthat, lattice, latticeExtra,
dtpcrm
dtpcrm, rmarkdown, bookdown, tufte, testthat, lattice,
latticeExtra, shiny, shinyjs, shinyFeedback
ggrepel, knitr, rmarkdown, spelling, testthat, vdiffr, covr
covr, ggrepel, knitr, rmarkdown, spelling, testthat, vdiffr
desc, git2r, glue, knitr, lintr, reticulate (>= 1.14),
rmarkdown, roxygen2, spelling, styler (>= 1.2), testthat (>=
2.1.0), versions
desc, digest, git2r, glue, knitr, lintr, mockery, pkgload,
reticulate (>= 1.16), rmarkdown, roxygen2, spelling, styler,
testthat (>= 2.1.0), usethis (>= 2.0.0)
desc, digest, docopt (>= 0.7.1), git2r, glue, knitr, lintr,
mockery, pkgload, reticulate (>= 1.16), rmarkdown, roxygen2,
spelling, styler, testthat (>= 2.1.0), tibble, usethis (>=
2.0.0)
knitr, covr, testthat, ggplot2, devtools
bookdown, knitr, rmarkdown, ggplot2, gridBase
kernlab, rpart, testthat, knitr, rmarkdown, ggplot2, lattice,
preproviz
gbm, testthat, preprocomb, preproviz, knitr, rmarkdown
gbm, preprocomb, preproviz, knitr, rmarkdown
googlesheets4 (>= 1.0), haven (>= 2.4.3), justifier (>=
0.2.1), knitr (>= 1.34), openxlsx (>= 4.2), markdown, readxl
(>= 1.3), rvest (>= 1.0), testthat (>= 3.0), writexl (>= 1.4),
XLConnect (>= 1.0), rmarkdown
googlesheets4 (>= 1.0), haven (>= 2.4.3), justifier (>=
0.2.2), knitr (>= 1.34), openxlsx (>= 4.2), markdown, readxl
(>= 1.3), rvest (>= 1.0), testthat (>= 3.0), writexl (>= 1.4),
XLConnect (>= 1.0), rmarkdown
binom, ggplot2, Hmisc, testthat, shinydashboard, shinytest
binom, dplyr, ggplot2, gt, Hmisc, knitr, magrittr, markdown,
rmarkdown, shinydashboard, shinytest, testthat, tidyr
callr, curl, glue, jsonlite, testthat, withr
V8, shinythemes, shinyAce, miniUI, testthat
miniUI, shinyAce, shinythemes, testthat, V8
covr, knitr, lintr, rmarkdown, testthat, vdiffr
covr, mockery, rstudioapi, testthat, withr
maptools, raster, rosm, testthat, rgdal, sp
knitr, rmarkdown, testthat, ggplot2, purrr, gridExtra, tidyr
knitr, rmarkdown, testthat, ggplot2, gridExtra, tidyr
bbmle, bipartite, cowplot, data.table, diagram, DiagrammeR,
DiagrammeRsvg, gdata, igraph, lavaan, magrittr, nlme, phaseR,
vegan, reshape2, rARPACK, rsvg
devtools, dplyr, ggplot2, knitr, microbenchmark, purrr,
rmarkdown, testthat, tidyr
devtools, dplyr, ggplot2, knitr, magick, microbenchmark,
purrr, rmarkdown, testthat, tidyr
knitr, gurobi (>= 9.0), roxygen2, rmarkdown, testthat (>=
3.0.0), raster, tmap, sp, viridis, markdown, data.table, purrr,
readr, slam, tibble, methods
knitr, gurobi (>= 9.0), Rcplex (>= 0.3.5), roxygen2,
Rsymphony (>= 0.1-31), rmarkdown, testthat (>= 3.0.0), raster,
tmap, sp, viridis, markdown, data.table, purrr, readr, slam,
tibble, methods
marxan, gurobi, lpsymphony, Rsymphony, knitr, rmarkdown,
glpkAPI, testthat
testthat, knitr, roxygen2, ape, shiny, xtable, rhandsontable,
RandomFields, velox, maptools, PBSmapping, spdep, gurobi,
lpsymphony, Rsymphony, rmarkdown
testthat, knitr, roxygen2, shiny, xtable, rhandsontable,
RandomFields, velox, maptools, PBSmapping, spdep, gurobi,
lpsymphony, Rsymphony, rmarkdown, prioritizrdata
testthat, knitr, roxygen2, shiny, xtable, rhandsontable,
RandomFields, maptools, PBSmapping, gurobi, lpsymphony,
Rsymphony, rmarkdown, prioritizrdata
testthat, knitr, roxygen2, shiny, scales, xtable,
rhandsontable, RandomFields, maptools, PBSmapping, gurobi,
lpsymphony, Rsymphony, rmarkdown, prioritizrdata
testthat, knitr, roxygen2, shiny, scales, xtable,
rhandsontable, RandomFields, maptools, PBSmapping, gurobi,
cplexAPI (>= 1.4.0), lpsymphony, Rsymphony, rmarkdown,
prioritizrdata
testthat, knitr, roxygen2, scales, xtable, RandomFields,
maptools, PBSmapping, gurobi, rcbc (>= 0.1.0.9001), cplexAPI
(>= 1.4.0), lpsymphony, Rsymphony, rmarkdown, prioritizrdata
(>= 0.2.4)
testthat, knitr, roxygen2, scales, RandomFields, maptools,
PBSmapping, gurobi, rcbc (>= 0.1.0.9001), cplexAPI (>= 1.4.0),
lpsymphony, Rsymphony, rmarkdown, prioritizrdata (>= 0.2.4)
testthat, knitr, rgeos, rasterVis, viridis, prioritizr
testthat, knitr, rmarkdown, covr, flextable
testthat, covr, knitr, rmarkdown, parsnip, ggplot2
covr, ggplot2, knitr, parsnip, rmarkdown, rsample, testthat
covr, ggplot2, knitr, modeldata, parsnip, rmarkdown, rsample,
testthat
covr, ggplot2, knitr, modeldata, parsnip, rmarkdown, rsample,
testthat (>= 3.0.0)
intoo, bivariate, mvtnorm, fclust, moments, scatterplot3d
mvtnorm, GDAdata, bibtex, knitr, rmarkdown
eventdataR, edeaR, testthat, knitr, rmarkdown, shiny
eventdataR, edeaR, testthat, knitr, rmarkdown, shiny,
RColorBrewer
eventdataR, edeaR, knitr, rmarkdown, shiny, RColorBrewer
eventdataR, edeaR, testthat, knitr, rmarkdown, shiny,
RColorBrewer, lubridate
knitr, rmarkdown, eventdataR, covr, compare, testthat (>=
3.0.0)
knitr, rmarkdown, eventdataR, testthat (>= 3.0.0)
knitr, rmarkdown, eventdataR, testthat (>= 3.0.0), rsvg,
DiagrammeRsvg, covr
covr, debugme, parallel, testthat, withr
callr, covr, debugme, parallel, testthat, withr
callr, covr, crayon, debugme, parallel, testthat, withr
callr, covr, crayon, curl, debugme, parallel, testthat, withr
callr (>= 3.2.0), codetools, covr, crayon, curl, debugme,
parallel, testthat, withr
callr (>= 3.2.0), cli, codetools, covr, curl, debugme,
parallel, testthat, withr
callr (>= 3.7.0), cli (>= 1.1.0), codetools, covr, curl,
debugme, parallel, testthat (>= 3.0.0), withr
callr (>= 3.7.0), cli (>= 3.3.0), codetools, covr, curl,
debugme, parallel, rlang (>= 1.0.2), testthat (>= 3.0.0), withr
rmarkdown, git2r, packrat, knitr, testthat
rmarkdown, knitr, testthat, rvest, xml2, rfigshare
dm, DiagrammeR, DiagrammeRsvg, RProtoBuf, testthat
covr, dm, DiagrammeR, DiagrammeRsvg, RProtoBuf, testthat
testthat (>= 3.0.0), gamlss.dist, ggplot2
knitr, ggplot2, rmarkdown, testthat, devtools
knitr, ggplot2, rmarkdown, testthat, devtools, shiny,
htmltools
graphics, tcltk, beepr, crayon, pbmcapply, progress, purrr,
foreach, plyr, doFuture, future, future.apply, furrr,
rstudioapi, shiny, commonmark, base64enc, tools
graphics, tcltk, beepr, pbmcapply, progress, purrr, foreach,
plyr, doFuture, future (>= 1.16.0), future.apply, furrr, shiny,
commonmark, tools
graphics, tcltk, beepr, pbmcapply, progress, purrr, foreach,
plyr, doFuture, future (>= 1.16.0), future.apply, furrr, shiny,
commonmark, base64enc, tools
graphics, tcltk, beepr, crayon, pbmcapply, progress, purrr,
foreach, plyr, doFuture, future, future.apply, furrr, shiny,
commonmark, base64enc, tools
testthat, vdiffr, roxygen2, knitr, rmarkdown, outbreaks
testthat, vdiffr, roxygen2, knitr, rmarkdown, outbreaks,
magrittr
testthat, vdiffr, roxygen2, knitr, rmarkdown, outbreaks,
magrittr, distcrete
testthat, roxygen2, knitr, rmarkdown, outbreaks, magrittr,
distcrete, svglite
testthat, roxygen2, knitr, rmarkdown, outbreaks, magrittr,
distcrete, svglite, EpiEstim
forcats, here (>= 0.1), testthat (>= 2.1.0), tidyverse (>=
1.2.1)
forcats, here (>= 0.1), testthat (>= 2.1.0)
forcats, here (>= 0.1), testthat (>= 2.3.2)
clipr, curl, dplyr, ggplot2, knitr, purrr, reprex, rmarkdown,
testthat, tidyr, yaml, htmltools, httr, covr
testthat, knitr, rmarkdown, glmnet, bayesplot
testthat, knitr, rmarkdown, glmnet, bayesplot (>= 1.5.0)
rstanarm, testthat, knitr, rmarkdown, glmnet, bayesplot (>=
1.5.0)
rstanarm, brms, testthat, knitr, rmarkdown, glmnet, bayesplot
(>= 1.5.0)
rstanarm, brms, testthat, knitr, rmarkdown, glmnet, bayesplot
(>= 1.5.0), optimx, posterior, parallel, foreach, iterators,
doParallel, future, future.callr, doFuture
rstanarm, brms, testthat, knitr, rmarkdown, glmnet, cmdstanr,
bayesplot (>= 1.5.0), optimx, posterior, parallel, foreach,
iterators, doParallel, future, future.callr, doFuture
rstanarm, brms, testthat, knitr, rmarkdown, glmnet, cmdstanr,
bayesplot (>= 1.5.0), nlme, optimx, posterior, parallel,
foreach, iterators, doParallel, future, future.callr, doFuture
testthat, future (>= 1.21.0), fastmap (>= 1.1.0), purrr,
knitr, rmarkdown, vembedr, spelling
callr, gert, mockery, pkgload, ps (>= 1.6.0), R6, rstudioapi,
testthat, withr
compositions, dendextend, ggplot2, ggthemes, knitr,
rmarkdown, testthat
compositions, dendextend, fastcluster, ggplot2, ggthemes,
knitr, rmarkdown, testthat
cccrm, compositions, data.table, grid, ggdendro, igraph,
knitr, plotly, reshape2, rmarkdown, testthat
ALDEx2, cccrm, compositions, data.table, grid, ggdendro,
knitr, plotly, reshape2, rgl, rmarkdown, testthat
ALDEx2, cccrm, compositions, data.table, datasets,
directlabels, grid, ggdendro, knitr, limma, plotly, reshape2,
rgl, rmarkdown, SDMTools, testthat
ALDEx2, Biobase, cccrm, compositions, data.table, datasets,
grid, ggdendro, knitr, limma, plotly, reshape2, rgl, rmarkdown,
SDMTools, testthat
ALDEx2, Biobase, cccrm, compositions, data.table, datasets,
grid, ggdendro, knitr, limma, plotly, reshape2, rgl, rmarkdown,
SDMTools, testthat, vegan
ALDEx2, Biobase, cccrm, compositions, data.table, datasets,
grid, ggdendro, knitr, limma, parallel, plotly, reshape2, rgl,
rmarkdown, SDMTools, testthat, vegan
knitr, rmarkdown, formatR, testthat, bookdown
Biostrings, GOSemSim, foreach, doParallel, doMC
Biostrings, GOSemSim, foreach, doParallel, org.Hs.eg.db
knitr, rmarkdown, Biostrings, GOSemSim, foreach, doParallel,
org.Hs.eg.db
testthat, covr, knitr, rmarkdown, proDA, limma, dendextend,
pheatmap, heatmaply, viridis, iq, furrr, future, parallel,
seriation, drc, naniar, httr, igraph, stringi, STRINGdb
testthat, covr, knitr, rmarkdown, proDA, limma, dendextend,
pheatmap, heatmaply, viridis, iq, furrr, future, parallel,
seriation, drc, httr, igraph, stringi, STRINGdb
testthat, covr, knitr, rmarkdown, proDA, limma, dendextend,
pheatmap, heatmaply, iq, furrr, future, parallel, seriation,
drc, httr, igraph, stringi, STRINGdb
testthat, covr, knitr, rmarkdown, proDA, limma, dendextend,
pheatmap, heatmaply, furrr, future, parallel, seriation, drc,
igraph, stringi, STRINGdb
testthat, covr, knitr, rmarkdown, shiny, r3dmol, proDA,
limma, dendextend, pheatmap, heatmaply, furrr, future,
parallel, seriation, drc, igraph, stringi, STRINGdb
testthat, covr, knitr, rmarkdown, shiny, r3dmol, proDA,
limma, dendextend, pheatmap, heatmaply, furrr, future,
parallel, seriation, drc, igraph, stringi, STRINGdb, iq
knitr, rdtLite, rdt, rmarkdown, testthat
digest, knitr, rdt, rdtLite, rmarkdown, testthat
testthat, entropy, proxy, knitr, rmarkdown
testthat, xml2, covr, withr, nycflights13, datasets,
rmarkdown, bench
testthat, xml2, covr, withr, nycflights13, datasets,
rmarkdown, knitr, bench
callr, covr, processx (>= 3.1.0), R6, rlang, testthat, tibble
callr, covr, curl, pingr, processx (>= 3.1.0), R6, rlang,
testthat, tibble
callr, covr, curl, pingr, processx (>= 3.1.0), R6, rlang,
testthat (>= 3.0.0), tibble
callr, covr, curl, pillar, pingr, processx (>= 3.1.0), R6,
rlang, testthat (>= 3.0.0),
knitr, rmarkdown, testthat, Matrix, assertthat, pkgload,
flexsurv, R.rsp
MCMCpack, car, lmtest, sandwich, zoo, coda, gam, vcd, mvtnorm
MCMCpack, car, lmtest, sandwich, zoo, coda, vcd, mvtnorm,
mgcv
lattice, MCMCpack, car, lmtest, sandwich, zoo, coda, vcd,
mvtnorm, mgcv
bspec, ggplot2 (>= 0.9), knitr, multitaper, plyr, RSEIS,
rbenchmark, reshape2
bspec, fftw (>= 1.0.3), ggplot2 (>= 0.9), knitr, multitaper,
plyr, RSEIS, rbenchmark, reshape2, testthat
bspec, fftw (>= 1.0.3), ggplot2 (>= 0.9), multitaper, plyr,
RSEIS, rbenchmark, reshape2, knitr, rmarkdown, signal, formatR,
testthat (>= 2.1.0)
ggplot2, testthat, knitr, printr, rmarkdown
foreign (>= 0.8-72), knitr, rmarkdown, testthat, bookdown,
readr
foreign (>= 0.8-80), knitr, rmarkdown, testthat, bookdown,
readr
foreign (>= 0.8-80), knitr, rmarkdown, testthat, bookdown,
readr, gtools, covr
knitr, eventdataR, rmarkdown, covr, testthat (>= 3.1.3)
import, ggplot2, data.table, ggstance, knitr, rmarkdown,
roxygen2, kableExtra, doParallel, parallel, stringr, scales,
testthat
knitr, R.rsp, rmarkdown, RcppArmadillo, bench, testthat,
numDeriv, lbfgsb3c, lbfgs, Matrix
R.rsp, rmarkdown, RcppArmadillo, bench, testthat, numDeriv,
lbfgsb3c, lbfgs, Matrix
R.rsp, rmarkdown, RcppArmadillo, RcppEigen, bench, testthat,
numDeriv, lbfgsb3c, lbfgs, Matrix
R.rsp, rmarkdown, RcppArmadillo, RcppEigen, bench, testthat,
numDeriv, lbfgsb3c, lbfgs, alabama
knitr, rmarkdown, testthat, MASS, boot, Matrix, lme4
correlation, covr, cowplot, fansi, ggrepel, GPArotation,
gridExtra, interactions, knitr, nFactors, nlme, pagedown,
qqplotr, rmarkdown, roxygen2, sandwich, see, semPlot, testthat
(>= 3.0.0), tidyselect
correlation, covr, cowplot, fansi, ggrepel, GPArotation,
gridExtra, interactions, knitr, nFactors, nlme, pagedown,
qqplotr, rmarkdown, roxygen2, sandwich, see, semPlot, spelling,
testthat (>= 3.0.0), tidyselect
polycor, GPArotation, sem, MASS,graph,Rgraphviz,mvtnorm,
Rcsdp
MASS, GPArotation, graph, Rgraphviz,mvtnorm, polycor, sem,
Rcsdp, lavaan
MASS, GPArotation, mvtnorm, polycor, sem, lavaan, Rcsdp,
graph, Rgraphviz
MASS, parallel, GPArotation, mvtnorm, polycor, sem, lavaan,
Rcsdp, graph, Rgraphviz
MASS, parallel, GPArotation, mvtnorm, sem, lavaan, Rcsdp,
graph, Rgraphviz
GPArotation, sem, lavaan, Rcsdp, graph, Rgraphviz
GPArotation, lavaan, sem, Rcsdp, graph, Rgraphviz
GPArotation, lavaan, sem, lme4,Rcsdp, graph, Rgraphviz
psychTools, GPArotation, lavaan, sem, lme4,Rcsdp, graph,
Rgraphviz
GPArotation, lavaan, sem, lme4,Rcsdp, graph,
Rgraphviz,psychTools
psychTools, GPArotation, lavaan, lme4, Rcsdp, graph,
Rgraphviz
psychTools, GPArotation, lavaan, lme4, Rcsdp, graph, knitr,
Rgraphviz
MASS, tmvtnorm, nor1mix, bib2df, cli, crayon, rmarkdown,
knitr
MASS, mvtnorm, nor1mix, bib2df, cli, crayon, rmarkdown,
knitr, testthat (>= 2.1.0)
MASS, mvtnorm, nor1mix, bib2df, rmarkdown, knitr, stringi,
cli, crayon, testthat (>= 2.1.0)
knitr, rmarkdown, testthat, covr, lmerTest, broom
knitr, rmarkdown, testthat, covr, lme4, broom
tidyverse, knitr, rmarkdown, testthat, covr, lme4, broom
knitr, rmarkdown, testthat, covr, lme4, plotly, loo (>=
2.0.0)
knitr, rmarkdown, testthat, covr, lme4, plotly
knitr, rmarkdown, testthat, covr, plotly, GPArotation
knitr, rmarkdown, testthat, covr, GPArotation
psychTools, semPlot, graphicalVAR, metaSEM, mvtnorm, ggplot2
Formula, likert, mirt, multcomp, sandwich
stablelearner (>= 0.1-3), strucchange, tinytest, mirt
spelling, knitr (>= 1.22), covr, dplyr, ggplot2, lda,
testthat (>= 3.0.2), rmarkdown
ggplot2, knitr, lubridate, rmarkdown, spelling, testthat,
covr, DiagrammeR (>= 1.0.0), knitr, rmarkdown, testthat
covr, DiagrammeR (>= 1.0.0), haven, googlesheets4, knitr,
openxlsx, readxl, rmarkdown, rstudioapi, testthat, writexl,
XLConnect
knitr, boot, lattice, rmarkdown, GeneCycle,
KEGGREST, knitr, markdown, rmarkdown, stringr, testthat,
ProjectTemplate (>= 0.9.3), testthat, knitr, rmarkdown,
markdown, covr
captioner, descr, epibasix, epiDisplay, haven, ISwR, knitr,
pander, papeR, psych, rmarkdown, visreg
epibasix, epiDisplay, haven, ISwR, knitr, psych, rmarkdown
epibasix, epiDisplay, haven, ISwR, psych, rmarkdown
broom, bookdown, GGally, ggeffects, ggfortify, ggpubr, ggsci,
haven, ISwR, jtools, kableExtra, knitr, latex2exp, lme4, MASS,
moonBook, mosaic, nlme, nnet, ordinal, psych, reshape2,
rmarkdown, rms, scales, tidyverse
broom, bookdown, GGally, ggeffects, ggfortify, ggpubr, ggsci,
haven, huxtable, ISwR, jtools, kableExtra, knitr, latex2exp,
lme4, MASS, moonBook, mosaic, nlme, nnet, ordinal, psych,
reshape2, rmarkdown, rms, scales, tidyverse
broom, bookdown, GGally, ggeffects, ggfortify, ggpubr, ggsci,
haven, ISwR, jtools, knitr, latex2exp, lme4, MASS, mosaic,
nlme, nnet, ordinal, psych, reshape2, rmarkdown, rms, scales,
tidyverse
broom, bookdown, GGally, ggeffects, ggfortify, ggpubr, ggsci,
haven, ISwR, jtools, knitr, latex2exp, lme4, MASS, mosaic,
nlme, nnet, performance, psych, reshape2, rmarkdown, rms,
scales, tidyverse
ggsci, epibasix, epiDisplay, haven, ISwR, psych, rmarkdown
broom, bookdown, GGally, ggeffects, ggsci, haven, ISwR,
kableExtra, knitr, latex2exp, lme4, MASS, moonBook, mosaic,
nlme, nnet, ordinal, psych, reshape2, rmarkdown, scales,
tidyverse, ztable
broom, bookdown, GGally, ggeffects, ggpubr, ggsci, haven,
ISwR, kableExtra, knitr, latex2exp, lme4, MASS, moonBook,
mosaic, nlme, nnet, ordinal, psych, reshape2, rmarkdown, rms,
scales, tidyverse
broom, effectsize, ggeffects, ggfortify, ggsci, ISwR, jtools,
knitr, latex2exp, lme4, MASS, nlme, nnet, parameters,
performance, report, rmarkdown, rms, rstatix, see, tidyverse
testthat (>= 2.1.0), covr, knitr, rmarkdown, metafor, qtl,
spelling
covr, knitr, lubridate, rmarkdown, testthat, vdiffr
BatchJobs, orca, huge, QUIC, glmnet, network, cluster,
testthat, knitr, rmarkdown
batchtools, rappdirs, orca, huge, MASS, QUIC, glmnet,
network, cluster, testthat, knitr, rmarkdown
batchtools (>= 0.9.10), fs (>= 1.2.2), checkmate (>= 1.8.5),
orca, huge, MASS, QUIC, glmnet, network, cluster, testthat,
knitr, rmarkdown
batchtools (>= 0.9.10), fs (>= 1.2.2), checkmate (>= 1.8.5),
orca, huge, MASS, BigQuic, glmnet, network, cluster, testthat,
knitr, rmarkdown
testthat, survival, lme4 (>= 1.1-8), ranger, randomForest,
rpart
covr, dplyr (>= 0.4.3), testthat, knitr, rmarkdown
covr, dplyr (>= 0.4.3), knitr, rmarkdown, testthat
covr, dplyr (>= 0.7.5), knitr, rmarkdown, testthat
covr, crayon, dplyr (>= 0.7.8), knitr, rmarkdown, testthat,
tibble, tidyselect
covr, crayon, dplyr (>= 0.7.8), httr, knitr, rmarkdown,
testthat, tibble, tidyselect, vctrs
covr, datasets, stringi, testthat, tibble
knitr, remotes, rmarkdown, testthat (>= 0.11)
knitr, remotes, rmarkdown, testthat (>= 0.11), xml2
knitr, digest, remotes, rmarkdown, testthat (>= 0.11), xml2
testthat (>= 0.11), ggplot2, knitr, rmarkdown
ggplot2, knitr, rmarkdown, roxygen2, testthat (>= 0.11)
rjstat, data.table, plyr, stringr, RJSONIO, ggplot2, knitr,
rmarkdown, roxygen2, testthat (>= 0.11)
rjstat, data.table (>= 1.9.6), plyr, stringr, RJSONIO,
ggplot2, knitr, rmarkdown, roxygen2, testthat (>= 0.11)
arulesCBA (>= 1.1.2), rCBA (>= 0.3.0), sbrl, stringr
arulesCBA (>= 1.2.0), rCBA (>= 0.3.0), stringr
rmarkdown, reshape2, knitr, testthat (>= 3.0.0)
koRpus, knitcitations, knitr, lda, lsa, plyr
english, koRpus, knitcitations, knitr, lda, lsa, plyr, proxy,
Rgraphviz, SnowballC
english, koRpus, knitcitations, knitr, lda, plyr, proxy,
Rgraphviz, SnowballC
english, koRpus, knitr, lda, proxy, stringi, SnowballC,
testthat
koRpus, knitr, lda, proxy, stringi, SnowballC, testthat
knitr, rmarkdown, MASS, RhpcBLASctl, testthat
broom, devtools, knitr, markdown, MASS, mice
RSVGTipsDevice, tikzDevice, fdrtool, lavaan, sem, pcalg
RSVGTipsDevice, tikzDevice, fdrtool, lavaan, sem
RSVGTipsDevice, fdrtool, lavaan, sem, rpanel
dplyr (>= 0.7.0), knitr, rmarkdown, testthat, tidyr
rmarkdown, markdown, covr, testthat (>= 2.1.0)
knitr, rmarkdown, dplyr, gridExtra, testthat (>= 3.0.0),
vdiffr (>= 0.3.3), scales
shiny, devtools, lattice, shinyBS, knitr, rmarkdown
knitr, rmarkdown, plyr, robustlmm, MASS, fitODBOD, glmmTMB,
VGAM, bbmle, epiphy, latticeExtra, xtable, testDriveR, gamlss,
bookdown, prettydoc, DHARMa, kableExtra, magrittr, afex,
plotrix, dfoptim, optimx
robustlmm, MASS, fitODBOD, VGAM, gamlss, prettydoc, DHARMa,
kableExtra, plotrix, dfoptim, optimx
robustlmm, MASS, fitODBOD, VGAM, glmmTMB (>= 1.1.2), gamlss,
prettydoc, DHARMa, kableExtra (>= 1.2), plotrix, dfoptim,
optimx, bookdown
fitODBOD, VGAM, glmmTMB (>= 1.1.2), gamlss, prettydoc,
DHARMa, kableExtra (>= 1.2), plotrix, dfoptim, optimx, bookdown
combinat, copula, knitr, mvtnorm, QRM, sfsmisc, RColorBrewer,
sn
combinat, copula, knitr, sfsmisc, RColorBrewer, sn
combinat, copula, qrng, sfsmisc, RColorBrewer, sn, knitr,
rmarkdown
combinat, copula, knitr, mvtnorm, QRM, rugarch, sfsmisc
combinat, copula, knitr, mvtnorm, QRM, sfsmisc
knitr, rmarkdown, testthat, dplyr, data.table
testthat, devtools, roxygen2, vdiffr, qtl
devtools, testthat, roxygen2, knitr, rmarkdown
covr, mvtnorm, knitr, rmarkdown, testthat, broman, devtools,
qtl2
covr, future, mvtnorm, knitr, rmarkdown, testthat, broman,
devtools, qtl2
covr, mvtnorm, knitr, rmarkdown, testthat, broman, devtools,
qtl2, parallelly
htmltools, jsonlite, knitr, devtools, roxygen2, rmarkdown,
testthat
htmltools, knitr, devtools, roxygen2, rmarkdown, testthat
covr, dplyr, ggplot2, kableExtra, knitr, MASS, rmarkdown,
shiny, shinydashboard, shinyWidgets, testthat (>= 3.0.0),
tidyr, viridis
datasets, knitr, rmarkdown, palr, rgl, testthat, ncdf4, covr
datasets, knitr, rmarkdown, palr, rgl, testthat, ncdf4, covr,
vdiffr, proj4
datasets, knitr, rmarkdown, palr, rgl, testthat (>= 2.1.0),
ncdf4, covr, proj4
testthat, spelling, lars, elasticnet, glmnet
covr, ggplot2, testthat, tigris, tidycensus, knitr, rmarkdown
testthat, knitr, maps, rmarkdown, rgl, spelling
knitr, rmarkdown, testthat, vcr, webmockr
covr, knitr, rmarkdown, testthat, vcr, webmockr
covr, knitr, rmarkdown, testthat, vcr (>= 1.2.0), webmockr
knitr, rmarkdown, testthat, pracma, MASS
ggplot2, knitr, rmarkdown, testthat, pracma, MASS
ggplot2, knitr, rmarkdown, testthat, pracma, MASS,
PerformanceAnalytics, png
knitr, lda, topicmodels, jsonlite (>= 0.9.10), streamR, tm
(>= 0.6), slam, ggplot2
knitr, lda, topicmodels, jsonlite (>= 0.9.10), streamR, tm,
slam, ggplot2
knitr, lda, topicmodels, jsonlite (>= 0.9.10), streamR, tm
(>= 0.6), slam, ggplot2, XML, testthat
knitr, lda, topicmodels, jsonlite (>= 0.9.10), streamR, tm
(>= 0.6), slam, ggplot2, XML, testthat, RColorBrewer
knitr, lda, topicmodels, jsonlite (>= 0.9.10), streamR, tm
(>= 0.6), slam, XML, testthat, RColorBrewer, ggplot2, grid
knitr, rmarkdown, lda, topicmodels, jsonlite (>= 0.9.10),
streamR, tm (>= 0.6), slam, XML, testthat, RColorBrewer,
ggplot2 (>= 2.1.0), grid
knitr, rmarkdown, lda, topicmodels, tm (>= 0.6), slam, XML,
testthat, RColorBrewer, xtable, DT
knitr, rmarkdown, lda, proxy, topicmodels, tm (>= 0.6), slam,
testthat, RColorBrewer, xtable, DT, ca
knitr, rmarkdown, lda, proxy, topicmodels, tm (>= 0.6), slam,
testthat, RColorBrewer, xtable, DT, ca, purrr
ca, dplyr, DT, e1071, ExPosition, koRpus, lda, lsa, proxy,
purrr, RColorBrewer, rmarkdown, slam, stm, svs, testthat,
text2vec, tibble, tidytext, tm (>= 0.6), topicmodels, xtable,
knitr
spelling, ca, dplyr, DT, e1071, ExPosition, lda, lsa, proxy,
purrr, RColorBrewer, rmarkdown, slam, stm, svs, testthat,
text2vec, tibble, tidytext, tm (>= 0.6), topicmodels, xtable,
knitr, igraph, wordcloud
ca, dplyr, DT, e1071, ExPosition, koRpus, lda, lsa, proxy,
purrr, RColorBrewer, rmarkdown, slam, stm, svs, testthat,
text2vec, tibble, tidytext, tm (>= 0.6), topicmodels, xtable,
knitr, igraph
ca, dplyr, DT, e1071, entropy, ExPosition, lda, lsa, proxy,
purrr, RColorBrewer, rmarkdown, slam, spelling, stm, svs,
testthat, text2vec, tibble, tidytext, tm (>= 0.6), topicmodels,
xtable, knitr, igraph, wordcloud
dplyr, DT, e1071, entropy, ExPosition, lda, lsa, proxy,
purrr, quanteda.textmodels, RColorBrewer, rmarkdown, slam,
spacyr, spelling, stm, svs, testthat, text2vec, tibble,
tidytext, tm (>= 0.6), tokenizers, topicmodels, xtable, knitr,
igraph, wordcloud
dplyr, DT, e1071, entropy, ExPosition, lda, lsa, proxy,
purrr, quanteda.textmodels, RColorBrewer, rmarkdown, slam,
spacyr, spelling, stm, svs, testthat, text2vec, tibble,
formatR, tidytext, tm (>= 0.6), tokenizers, topicmodels,
xtable, knitr, igraph, wordcloud
rmarkdown, spelling, testthat, formatR, tm (>= 0.6),
tokenizers, knitr, lda, lsa, dplyr, purrr, quanteda.textmodels,
quanteda.textstats, quanteda.textplots, RColorBrewer, slam,
spacyr, stm, text2vec, topicmodels, jsonlite, quanteda, tibble,
tidytext, xtable, ggplot2
ca, covr, knitr, lsa, spelling, RColorBrewer, testthat
ca, covr, fastNaiveBayes, knitr, lsa, microbenchmark,
naivebayes, spelling, RColorBrewer, testthat, rmarkdown
ca, covr, fastNaiveBayes, knitr, lsa, microbenchmark,
naivebayes, quanteda.textplots, spelling, RColorBrewer,
testthat, rmarkdown
ca, covr, fastNaiveBayes, knitr, lsa, microbenchmark,
naivebayes, quanteda.textplots, spelling, testthat, rmarkdown
knitr, quanteda.textmodels, quanteda.textstats, rmarkdown,
spelling, testthat, wordcloud
entropy, ExPosition, proxy, rmarkdown, spelling, svs,
testthat, knitr
tibble, pillar, dplyr, tidyr, testthat, knitr, rmarkdown
pillar, dplyr (>= 1.0.0), vctrs (>= 0.3.1), tidyr, testthat,
knitr, rmarkdown
Defaults, DBI, RMySQL, RSQLite, timeSeries, its
tripack, akima, MASS, survival, rgl, logspline, nor1mix,
MatrixModels, Matrix, Formula, zoo
tripack, akima, MASS, survival, rgl, logspline, nor1mix,
MatrixModels, Matrix, Formula, zoo, dynlm
tripack, akima, MASS, survival, rgl, logspline, nor1mix,
Formula, zoo
tripack, akima, MASS, survival, rgl, logspline, nor1mix,
Formula, zoo, R.rsp
tripack, akima, MASS, survival, rgl, logspline, nor1mix,
Formula, zoo, R.rsp, conquer
tripack, akima, rgl, logspline, nor1mix, Formula, zoo, R.rsp,
conquer
tripack, interp, rgl, logspline, nor1mix, Formula, zoo,
R.rsp, conquer
memisc, testthat, roxygen2, R2HTML, dplyr, forcats, knitr
memisc, testthat, roxygen2, dplyr, tidyr, janitor, forcats,
knitr
testthat, roxygen2, dplyr, tidyr, janitor, forcats, knitr
testthat, roxygen2, dplyr, tidyr, janitor, forcats, knitr,
rmarkdown
testthat, roxygen2, dplyr, ggplot2, tidyr, janitor, forcats,
knitr, rmarkdown, survey, Hmisc
knitr, rmarkdown, testthat, reshape2, ggplot2
fastshp, hunspell, knitr, rmarkdown, testthat (>= 1.0.2)
covr, fastshp, hunspell, knitr, rmarkdown, testthat (>=
1.0.2)
covr, fastshp, knitr, png, rmarkdown, spelling, testthat (>=
1.0.2), visualTest
data.tree, survival, testthat, covr, rbenchmark, rmarkdown
survival, testthat, covr, rbenchmark, rmarkdown
knitr, rmarkdown, shiny, shinytest, testthat, webshot
knitr, rmarkdown, R6, shiny, shinytest, testthat, webshot
covr, r2dii.data, r2dii.match, roxygen2, spelling, testthat
(>= 2.1.0)
covr, r2dii.match, rmarkdown, roxygen2, spelling, testthat
(>= 2.1.0)
covr, r2dii.match, rmarkdown, roxygen2, spelling, testthat
(>= 3.0.0), withr
covr, rlang, rmarkdown, testthat (>= 2.1.0)
covr, rmarkdown, spelling, testthat (>= 2.1.0)
covr, r2dii.analysis, r2dii.match, rmarkdown, spelling,
testthat (>= 3.0.0)
caret, e1071, earth, evtree, glmnet, mlbench, partykit,
randomForest, ranger, xgboost
caret, e1071, earth, evtree, glmnet, mlbench, mlr, partykit,
randomForest, ranger, xgboost
datasets, ggplot2, testthat (>= 3.0.0), knitr, rmarkdown
knitr, covr, testthat (>= 3.0.0), rmarkdown, microbenchmark,
hash
knitr, rmarkdown, testthat, emmeans, dplyr, tidyverse,
devtools
stringi, knitr, rmarkdown, testthat, emmeans, dplyr, tidyr,
devtools, covr, ggplot2, haven
stringi, knitr, rmarkdown, emmeans, tidyr, devtools, covr,
dplyr, testthat, ggplot2
RcppXPtrUtils, slam, RUnit, deSolve, RcppArmadillo
knitr (>= 1.15.1), rmarkdown (>= 1.3), R.rsp (>= 0.40.0),
testthat (>= 1.0.2), roxygen2, BayesianTools, sensitivity,
dplyr, ggplot2
knitr, rmarkdown, shiny, colourpicker, covr, testthat
gtools, gplots, knitr, maps, pso, testthat, truncnorm,
rmarkdown, shiny, flextable, reshape2, ggpubr
covr, ggplot2 (>= 3.3.1), knitr, mapview, rmarkdown, testthat
akima, covr, dplyr, ggplot2 (>= 3.3.1), knitr, mapview,
rmarkdown, testthat
akima, covr, dplyr, ggplot2 (>= 3.3.1), knitr, mapview,
rmarkdown, rgdal, testthat
interp, covr, dplyr, ggplot2 (>= 3.3.1), knitr, mapview,
rmarkdown, rgdal, testthat
vcr (>= 0.6.0), testthat (>= 3.0.0), knitr, rmarkdown
vcr (>= 0.6.0), testthat (>= 3.0.0), knitr, rmarkdown,
webmockr
dplyr, testthat, covr, knitr, magrittr, purrr, rmarkdown
magrittr, shiny, testthat, shinydashboard, base64enc,
lubridate, jsonlite
magrittr, shiny, testthat, shinydashboard, base64enc
testthat, knitr, rmarkdown, pkgload, RUnit
knitr, lintr, microbenchmark, rmarkdown, testthat
knitr, lintr, microbenchmark, rmarkdown, testthat (>= 3.0.1)
ggpubr, knitr, lintr, microbenchmark, rmarkdown, testthat (>=
3.0.1)
rgeos, rgbif (>= 0.9.2), downscale (>= 1.2-4), knitr,
rmarkdown, R.rsp
rgeos, rgbif (>= 0.9.2), knitr,rmarkdown,
R.rsp,testthat,spelling
Biostrings, GOSemSim, foreach, doParallel, RCurl,
org.Hs.eg.db
knitr, rmarkdown, R.rsp, ggplot2, testthat
knitr, rmarkdown, R.rsp, ggplot2, testthat, formatR, tibble,
digest
knitr, rmarkdown, R.rsp, ggplot2, testthat, formatR, tibble,
digest, pkgdown, covr
testthat, devtools, roxygen2, knitr, reshape2, survival
testthat (>= 2.1.0), knitr, rmarkdown, webshot
knitr, rmarkdown, gganimate, R2jags, coda
devtools, knitr, leaflet, leafsync, lidR, plot3D, rasterVis,
rmarkdown, viridis, xtable
lattice, leaflet, leafsync, lidR, plot3D, rasterVis, viridis
devtools, knitr, lattice, leaflet, leafsync, lidR, plot3D,
rasterVis, rmarkdown, viridis, xtable
dplyr, knitr, magrittr, rmarkdown, sf, tmap
testthat, knitr, rmarkdown, stringi, ggplot2, scales
knitr, testthat, rmarkdown, ggplot2, dplyr, tidyr
knitr, testthat, rmarkdown, ggplot2, dplyr, tidyr, covr,
scales
testthat, graph, Rgraphviz (>= 2.16.0), knitr, ggplot2,
rmarkdown
gbm, knitr, pander, randomForest, rmarkdown, spelling,
testthat, vdiffr
knitr, rmarkdown, INLA (>= 0.0-1468840039), testthat,
excursions
knitr, rmarkdown, INLA (>= 0.0-1468840039), testthat
knitr, rmarkdown, INLA (>= 0.0-1468840039), testthat, rgdal
R.rsp, rmarkdown, INLA (>= 0.0-1468840039), testthat, rgdal,
gridExtra, ggplot2, lattice, splancs, fields, optimParallel,
parallel
R.rsp, rmarkdown, INLA (>= 0.0-1468840039), testthat, rgdal,
gridExtra, ggplot2, lattice, splancs, fields, optimParallel,
inlabru, sn
RColorBrewer, Rgraphviz, igraphdata, testthat (>= 3.0.0)
knitr, rmarkdown, covr, testthat (>= 3.0.1)
covr, knitr, R.rsp, rmarkdown, testthat (>= 2.0.0)
knitr, rmarkdown, stats, graphics, grDevices
dplyr, rgdal, pbapply, testthat (>= 2.1.0), knitr, rmarkdown,
RColorBrewer, covr
dplyr, pbapply, testthat (>= 2.1.0), knitr, rmarkdown,
RColorBrewer, covr
testthat, knitr, rmarkdown, tidyr, shiny
testthat (>= 1.0.0), covr (>= 1.2.0), knitr, rmarkdown
testthat (>= 2.0.0), knitr, rmarkdown, markdown
testthat (>= 2.0.0), pkgdown (>= 1.1.0), markdown
testthat, knitr, rmarkdown, viridis, devtools
testthat, knitr, rmarkdown, viridis, devtools, roxygen2
testthat, scatterplot3d, beepr, knitr, rmarkdown
testthat, covr, knitr, rmarkdown, rvest, hashmap, stringr,
xml2
knitr, rmarkdown, ggplot2, devoid, bench, rlang, tidyr,
ggridges, hexbin, dplyr, sessioninfo, magick
testthat, roxygen2, knitr, rmarkdown, reshape2, stringr,
ggplot2, MASS, RColorBrewer, R.cache, Quandl
testthat, roxygen2, knitr, rmarkdown, reshape2, stringr,
ggplot2, MASS, RColorBrewer, BondValuation, R.cache, Quandl
dplyr, forcats, knitr, rmarkdown, stringr, tidyr
testthat, knitr, rmarkdown, covr, vdiffr, tm, FNN,
quanteda.textmodels
testthat, knitr, rmarkdown, covr, tm, FNN,
quanteda.textmodels
testthat, knitr, rmarkdown, tm, FNN, quanteda.textmodels
testthat, knitr, rmarkdown, tm, FNN, quanteda.textmodels,
vdiffr
covr, testthat, httptest, knitr, rmarkdown
roxygen2 (>= 6.0.1), rmarkdown, knitr, testthat, covr
glmnet, XML, survival, pec, Hmisc, mlbench
glmnet, XML, survival, pec, prodlim, Hmisc, mlbench
survival, pec, prodlim, mlbench, akima, caret, imbalance,
cluster
glmnet, XML, survival, pec, prodlim, mlbench
glmnet, survival, pec, prodlim, mlbench, RCurl
glmnet, survival, pec, prodlim, mlbench, akima, caret
survival, pec, prodlim, mlbench, akima, caret, imbalance
survival, pec, prodlim, mlbench, interp, caret, imbalance,
cluster
knitr, dplyr, blockTools, testthat, rmarkdown, ri
knitr, dplyr, blockTools, testthat, rmarkdown
emoa, rmarkdown, testthat, knitr, roxygen2
shiny (>= 0.8.0), doParallel, testthat, knitr, rmarkdown,
MASS
testthat, knitr, ggplot2, viridis, rmarkdown, pkgdown, nlme
testthat, knitr, ggplot2, viridis, rmarkdown, pkgdown, nlme,
igraph, spdep
BIEN, biomod2, dismo, ecospat, ENMeval, googlesheets, knitr,
rmarkdown
BIEN, biomod2, dismo, ecospat, googlesheets, knitr, rmarkdown
roxygen2, testthat (>= 3.0.0), covr, withr
knitr, dplyr, vegan, gurobi, rgurobi, gridExtra, rgl
knitr, roxygen2, dplyr, vegan, gurobi, rgurobi, gridExtra,
rgl, testthat
knitr, roxygen2, dplyr, vegan, gurobi, gridExtra, rgl,
testthat
knitr, roxygen2, rmarkdown, dplyr, vegan, gurobi, gridExtra,
rgl, testthat
knitr, roxygen2, rmarkdown, testthat, RgoogleMaps (>=
1.4.5.3), dplyr (>= 1.0.8), vegan (>= 2.6.2), gurobi (>=
8.0.0), gridExtra (>= 2.3), rgl (>= 0.108.3),
rmarkdown, testthat, RUnit, devtools, rprojroot, withr,
pkgload
devtools, pkgload, rmarkdown, rprojroot, RUnit, testthat,
withr
devtools, pkgload, rasciidoc, rmarkdown, rprojroot, RUnit,
testthat, withr
testthat (>= 3.0.0), tinytest (>= 1.3.1), doParallel (>=
1.0.16), knitr, rmarkdown
testthat (>= 3.0.0), tinytest (>= 1.3.1), doParallel (>=
1.0.16), mgcv (>= 1.8.40), knitr, rmarkdown
rgdal (>= 0.5-33), RNetCDF, igraph, tcltk, lattice, fields
rgdal (>= 0.5-33), RNetCDF, igraph, tcltk, lattice
rgdal (>= 0.5-33), ncdf, igraph, tcltk, lattice
rgdal (>= 0.5-33), ncdf, igraph, tcltk, lattice, rgl
rgdal (>= 0.5-33), ncdf, igraph, snow, tcltk, lattice, rgl
rgdal (>= 0.5-33), ncdf, igraph, snow, tcltk, lattice, rgl,
ggplot2
rgdal (>= 0.5-33), ncdf, igraph, snow, tcltk, rgl, ggplot2
rgdal (>= 0.5-33), ncdf, igraph, snow, tcltk
rgdal (>= 0.5-33), rgeos (>= 0.1-10), ncdf, igraph, snow,
tcltk
rgdal (>= 0.5-33), rgeos (>= 0.1-13), ncdf, igraph, snow,
tcltk
rgdal (>= 0.5-33), rgeos (>= 0.1-15), ncdf, igraph, snow,
tcltk
rgdal (>= 0.5-33), rgeos (>= 0.2-1), ncdf, igraph, snow,
tcltk
rgdal (>= 0.6-28), rgeos (>= 0.2-3), ncdf, igraph, snow,
tcltk
rgdal (>= 0.6-28), rgeos (>= 0.2-3), ncdf, igraph0, snow,
tcltk
rgdal (>= 0.6-28), rgeos (>= 0.2-3), ncdf, ncdf4, igraph0,
snow, tcltk
rgdal (>= 0.6-28), rgeos (>= 0.2-3), ncdf, ncdf4, igraph,
snow, bigmemory, tcltk, rasterVis
rgdal (>= 0.7-22), rgeos (>= 0.2-3), ncdf, ncdf4, igraph,
snow, bigmemory, tcltk, rasterVis
rgdal (>= 0.7-22), rgeos (>= 0.2-3), ncdf, ncdf4, igraph,
snow, tcltk, rasterVis
rgdal (>= 0.8-10), rgeos (>= 0.2-3), ncdf, ncdf4, igraph,
snow, tcltk, rasterVis
rgdal (>= 0.8-12), rgeos (>= 0.3-1), ncdf, ncdf4, igraph,
snow, tcltk, rasterVis
rgdal (>= 0.8-12), rgeos (>= 0.3-8), ncdf, ncdf4, igraph,
snow, tcltk, rasterVis
rgdal (>= 0.8-12), rgeos (>= 0.3-8), ncdf, ncdf4, igraph,
tcltk, parallel, rasterVis
rgdal (>= 0.9-1), rgeos (>= 0.3-8), ncdf, ncdf4, igraph,
tcltk, parallel, rasterVis
rgdal (>= 0.9-1), rgeos (>= 0.3-8), ncdf4, igraph, tcltk,
parallel, rasterVis
rgdal (>= 0.9-1), rgeos (>= 0.3-8), ncdf4, igraph, tcltk,
parallel, rasterVis, MASS, sf
rgdal (>= 0.9-1), rgeos (>= 0.3-8), ncdf4, igraph, tcltk,
parallel, rasterVis, MASS, sf, testthat
rgdal (>= 1.5-8), rgeos (>= 0.3-8), ncdf4, igraph, tcltk,
parallel, rasterVis, MASS, sf, tinytest, gstat, fields
rgdal (>= 1.5-8), rgeos (>= 0.3-8), ncdf4, igraph, tcltk,
parallel, rasterVis, MASS, sf, testthat, gstat, fields
rgdal (>= 1.5-8), rgeos (>= 0.3-8), ncdf4, igraph, tcltk,
parallel, rasterVis, MASS, sf, tinytest, gstat, fields,
exactextractr
rgdal (>= 1.5-23), rgeos (>= 0.5-3), ncdf4, igraph, tcltk,
parallel, rasterVis, MASS, sf, tinytest, gstat, fields,
exactextractr
rgdal (>= 1.5-23), ncdf4, igraph, tcltk, parallel, rasterVis,
MASS, sf, tinytest, gstat, fields, exactextractr
ncdf4, igraph, tcltk, parallel, rasterVis, MASS, sf,
tinytest, gstat, fields, exactextractr
mgcv, rgl, ggplot2, colorspace, dichromat
parallel, mgcv, rgl, ggplot2, colorspace, dichromat
parallel, rgl, ggplot2, colorspace, dichromat
knitr, rmarkdown, RColorBrewer, rasterVis, gridExtra, ggplot2
parallel, doParallel, knitr, rmarkdown, rasterVis,
RColorBrewer, gridExtra, gstat
grid, stats, compiler, loon, purrr, covr, testthat, knitr,
rmarkdown, lubridate
covr, testthat, knitr, rmarkdown, lubridate
knitr, rmarkdown, testthat (>= 3.0.0), vdiffr (>= 1.0.0)
knitr, rmarkdown, testthat (>= 3.0.0), tidyterra, vdiffr (>=
1.0.0)
testthat, microbenchmark, knitr, rmarkdown, covr
RGtk2, pmml (>= 1.2.13), bitops, colorspace, ada, amap,
arules, arulesViz, biclust, cairoDevice, cba, Deducer, descr,
doBy, e1071, ellipse, fBasics, foreign, fpc, gdata, ggplot2,
gplots, graph, grid, gtools, gWidgetsRGtk2, hmeasure, Hmisc,
kernlab, latticist, Matrix, methods, mice, network, nnet,
odfWeave, party, playwith, psych, randomForest, RBGL,
RColorBrewer, reshape, rggobi, RGtk2Extras, ROCR, RODBC, rpart,
rpart.plot, survival, timeDate, verification, weightedKmeans,
XML, pkgDepTools, Rgraphviz
RGtk2, pmml (>= 1.2.13), bitops, colorspace, ada, amap,
arules, arulesViz, biclust, cairoDevice, cba, Deducer, descr,
doBy, e1071, ellipse, fBasics, foreign, fpc, gdata, ggdendro,
ggplot2, gplots, graph, grid, gtools, gWidgetsRGtk2, hmeasure,
Hmisc, kernlab, latticist, Matrix, methods, mice, network,
nnet, odfWeave, party, playwith, psych, randomForest, RBGL,
RColorBrewer, reshape, rggobi, RGtk2Extras, ROCR, RODBC, rpart,
rpart.plot, Snowball, survival, timeDate, verification,
weightedKmeans, XML, pkgDepTools, Rgraphviz
RGtk2, pmml (>= 1.2.13), bitops, colorspace, ada, amap,
arules, arulesViz, biclust, cairoDevice, cba, corrplot, descr,
doBy, e1071, ellipse, fBasics, foreign, fpc, gdata, ggdendro,
ggplot2, gplots, graph, grid, gtools, gWidgetsRGtk2, hmeasure,
Hmisc, kernlab, latticist, Matrix, methods, mice, network,
nnet, odfWeave, party, playwith, plyr, psych, randomForest,
RBGL, RColorBrewer, reshape, rggobi, RGtk2Extras, ROCR, RODBC,
rpart, rpart.plot, SnowballC, stringr, survival, timeDate, tm,
verification, weightedKmeans, XML, xlsx, pkgDepTools, Rgraphviz
RGtk2, pmml (>= 1.2.13), bitops, colorspace, ada, amap,
arules, arulesViz, biclust, cairoDevice, cba, corrplot, descr,
doBy, dplyr, e1071, ellipse, fBasics, foreign, fpc, gdata,
ggdendro, ggplot2, gplots, graph, grid, gtools, gWidgetsRGtk2,
hmeasure, Hmisc, kernlab, latticist, Matrix, methods, mice,
nnet, odfWeave, party, playwith, plyr, psych, randomForest,
RBGL, RColorBrewer, reshape, rggobi, RGtk2Extras, ROCR, RODBC,
rpart, rpart.plot, SnowballC, stringr, survival, timeDate, tm,
verification, weightedKmeans, XML, xlsx, pkgDepTools, Rgraphviz
RGtk2, pmml (>= 1.2.13), bitops, colorspace, ada, amap,
arules, arulesViz, biclust, cairoDevice, cba, corrplot, descr,
doBy, dplyr, e1071, ellipse, fBasics, foreign, fpc, gdata,
ggdendro, ggplot2, gplots, graph, grid, gtools, gWidgetsRGtk2,
hmeasure, Hmisc, kernlab, Matrix, methods, mice, nnet,
odfWeave, party, playwith, plyr, psych, randomForest, RBGL,
RColorBrewer, reshape, rggobi, RGtk2Extras, ROCR, RODBC, rpart,
rpart.plot, SnowballC, stringr, survival, timeDate, tm,
verification, weightedKmeans, XML, xlsx, pkgDepTools, Rgraphviz
pmml (>= 1.2.13), bitops, colorspace, ada, amap, arules,
arulesViz, biclust, cairoDevice, cba, corrplot, descr, doBy,
dplyr, e1071, ellipse, fBasics, foreign, fpc, gdata, ggdendro,
ggplot2, gplots, graph, grid, gtools, gWidgetsRGtk2, hmeasure,
Hmisc, kernlab, Matrix, methods, mice, nnet, odfWeave, party,
playwith, plyr, psych, randomForest, RBGL, RColorBrewer,
readxl, reshape, rggobi, RGtk2Extras, ROCR, RODBC, rpart,
rpart.plot, SnowballC, stringr, survival, timeDate, tm,
verification, wskm, XML, pkgDepTools, Rgraphviz
pmml (>= 1.2.13), bitops, colorspace, ada, amap, arules,
arulesViz, biclust, cairoDevice, cba, cluster, corrplot, descr,
doBy, dplyr, e1071, ellipse, fBasics, foreign, fpc, gdata,
ggdendro, ggplot2, gplots, graph, grid, gridExtra, gtools,
gWidgetsRGtk2, hmeasure, Hmisc, kernlab, Matrix, mice, nnet,
odfWeave, party, playwith, plyr, psych, randomForest, RBGL,
RColorBrewer, readxl, reshape, rggobi, RGtk2Extras, ROCR,
RODBC, rpart, rpart.plot, SnowballC, stringr, survival,
timeDate, tm, verification, wskm, XML, pkgDepTools, Rgraphviz
pmml (>= 1.2.13), bitops, colorspace, ada, amap, arules,
arulesViz, biclust, cba, cluster, corrplot, descr, doBy, e1071,
ellipse, fBasics, foreign, fpc, gdata, ggdendro, ggraptR,
gplots, grid, gridExtra, gtools, gWidgetsRGtk2, hmeasure,
Hmisc, kernlab, Matrix, mice, nnet, odfWeave, party, playwith,
plyr, psych, randomForest, rattle.data, RColorBrewer, readxl,
reshape, rggobi, ROCR, RODBC, rpart, SnowballC, survival,
timeDate, tm, verification, wskm, RGtk2Extras, xgboost
pmml (>= 1.2.13), bitops, colorspace, ada, amap, arules,
arulesViz, biclust, cairoDevice, cba, cluster, corrplot, descr,
doBy, e1071, ellipse, fBasics, foreign, fpc, gdata, ggdendro,
ggraptR, gplots, grid, gridExtra, gtools, gWidgetsRGtk2,
hmeasure, Hmisc, kernlab, Matrix, mice, nnet, party, playwith,
plyr, psych, randomForest, rattle.data, RColorBrewer, readxl,
reshape, rggobi, RGtk2, ROCR, RODBC, rpart, scales, SnowballC,
survival, timeDate, tm, verification, wskm, RGtk2Extras,
xgboost
pmml (>= 1.2.13), bitops, colorspace, ada, amap, arules,
arulesViz, biclust, cairoDevice, cba, cluster, corrplot, descr,
doBy, e1071, ellipse, fBasics, foreign, fpc, gdata, ggdendro,
ggraptR, gplots, grid, gridExtra, gtools, gWidgetsRGtk2,
hmeasure, Hmisc, kernlab, Matrix, mice, nnet, party, plyr,
psych, randomForest, RColorBrewer, readxl, reshape, rggobi,
RGtk2, ROCR, RODBC, rpart, scales, SnowballC, survival,
timeDate, tm, verification, wskm, xgboost
pmml (>= 1.2.13), colorspace, ada, amap, arules, arulesViz,
biclust, cairoDevice, cba, cluster, corrplot, descr, doBy,
e1071, ellipse, fBasics, foreign, fpc, gdata, ggdendro,
ggraptR, gplots, grid, gridExtra, gtools, hmeasure, Hmisc,
kernlab, Matrix, mice, nnet, party, plyr, psych, randomForest,
RColorBrewer, readxl, reshape, rggobi, RGtk2, ROCR, RODBC,
rpart, scales, SnowballC, survival, timeDate, tm, verification,
wskm, xgboost
pmml (>= 1.2.13), colorspace, ada, amap, arules, arulesViz,
biclust, cairoDevice, cba, cluster, corrplot, descr, doBy,
e1071, ellipse, fBasics, foreign, fpc, gdata, ggdendro, gplots,
grid, gridExtra, gtools, Hmisc, janitor, kernlab, Matrix, mice,
nnet, party, plyr, psych, RGtk2, randomForest, RColorBrewer,
readxl, reshape, ROCR, RODBC, rpart, scales, SnowballC,
survival, timeDate, tm, xgboost
repo, knitr, rmarkdown, testthat, ggplot2
fastmap (>= 1.1.0), rlang (>= 1.0.2), crayon (>= 1.4.2),
rstudioapi, knitr, rmarkdown
htmltools, fastmap (>= 1.1.0), rlang (>= 1.0.2), crayon (>=
1.4.2), rstudioapi, knitr, httr, rmarkdown
testthat, reticulate, knitr, rmarkdown, bs4Dash, clustermq,
shiny, shinybusy, visNetwork, shinyWidgets, arrow
rpymat, visNetwork, testthat, reticulate, knitr, rmarkdown,
bs4Dash, clustermq, shiny, shinybusy, shinyWidgets, arrow,
ravetools, later (>= 1.3.0)
fftwtools, pracma, microbenchmark, testthat (>= 3.0.0)
fftwtools, bit64, pracma, microbenchmark, testthat
dplyr, tidyr, ggplot2, lubridate, devtools, actuar,
ChainLadder, knitr, readr, readxl, rmarkdown, mondate, FinCal,
rstan, scales, nlme, maps
dplyr, tidyr, ggplot2, lubridate, devtools, actuar,
ChainLadder, knitr, readr, readxl, rmarkdown, mondate, FinCal,
rstan, scales, nlme, maps, fitdistrplus, tweedie, nycflights13,
XML, RColorBrewer, Lahman
dplyr, tidyr, ggplot2, lubridate, devtools, actuar,
ChainLadder, knitr, readr, readxl, rmarkdown, mondate, FinCal,
scales, nlme, maps, fitdistrplus, tweedie, nycflights13, XML,
RColorBrewer, Lahman
actuar, ChainLadder, devtools, FinCal, fitdistrplus,
insuranceData, knitr, Lahman, lubridate, maps, mondate,
nycflights13, nlme, RColorBrewer, rmarkdown, scales, tidyverse,
tweedie, XML
actuar, ChainLadder, dplyr, devtools, FinCal, fitdistrplus,
forcats, ggplot2, insuranceData, knitr, Lahman, lubridate,
maps, mondate, nlme, nycflights13, purrr, randomForest,
randomNames, readr, readxl, RColorBrewer, rmarkdown, scales,
stringr, tibble, tidyr, tweedie, XML
sf, spData, dplyr, Rvcg, testthat (>= 3.0.0)
reshape2, viridis, av, magick, ggplot2, sf, rayrender,
rayimage
reshape2, viridis, av, magick, ggplot2, sf, rayrender,
isoband
reshape2, viridis, av, magick, ggplot2, sf, rayrender,
isoband, maptools, geosphere
testthat, knitr, DT, miniUI, shiny, xtable, rmarkdown,
ggplot2, covr, scales, magrittr, tibble, tidyr, fixedincome
testthat, knitr, DT, miniUI, shiny, xtable, rmarkdown,
ggplot2, covr, scales, magrittr, tibble, tidyr, withr
ggmap, knitr, glue, rmarkdown, testthat (>= 2.1.0),
tidygraph, lwgeom
bgmfiles, covr, graticule, knitr, rgdal, rmarkdown, roxygen2,
scales, testthat
bgmfiles, covr, graticule, knitr, rgdal, rgeos, rmarkdown,
roxygen2, scales, spdplyr, testthat
bgmfiles, covr, knitr, rmarkdown, roxygen2, testthat
coda, covr (>= 3.2.0), R.rsp, stringi, testthat, ggplot2
coda, covr (>= 3.2.0), R.rsp, stringi, testthat, ggplot2,
markdown
R.rsp, testthat, covr (>= 3.2.0), stringi
R.rsp, markdown, testthat, covr (>= 3.2.0), stringi
covr, testthat, vdiffr, knitr, rmarkdown
covr, graphics, knitr, miniUI, rmarkdown, rstudioapi, shiny,
testthat, vdiffr
DT, knitr, png, rmarkdown, testthat (>= 3.0.0)
spelling, testthat (>= 2.1.0), knitr, rmarkdown
roxygen2 (>= 5.0.1), knitr, testthat, taxize, covr
roxygen2 (>= 6.0.1), knitr, testthat, taxize
roxygen2 (>= 6.1.0), knitr, testthat, taxize, vcr
roxygen2 (>= 6.1.1), knitr, testthat, taxize, vcr (>= 0.2.6)
dplyr, covr, tidyr, nlme, testthat, emmeans, tibble, mvtnorm,
knitr, rmarkdown, bookdown, lubridate, purrr, ggplot2, R.rsp
dplyr, tidyr, nlme, testthat, emmeans, tibble, mvtnorm,
knitr, rmarkdown, bookdown, lubridate, purrr, ggplot2, R.rsp
testthat, data.table, lattice, roxygen2 (>= 5.0.0)
testthat, data.table, lattice, lintr, roxygen2 (>= 5.0.0),
knitr
testthat, data.table, lattice, lintr, roxygen2 (>= 5.0.0),
latticeExtra, knitr, rmarkdown
testthat, data.table, lattice, lintr, roxygen2 (>= 5.0.0),
latticeExtra, knitr, rmarkdown, markdown
CBPS, ebal, ipw, kableExtra, knitr, survey, rmarkdown,
testthat (>= 3.0.0)
ebal, knitr, survey, rmarkdown, testthat (>= 3.0.0)
autothresholdr, conicfit, EBImage, bbmle, imager
spelling, rmarkdown, testthat (>= 2.1.0)
covr, MASS, testthat, vdiffr, sf, spData
checkpoint, testthat, R.rsp, rvest, xml2
xtable, RUnit, knitr, rmarkdown, devtools
testthat, covr, googledrive, curl, httpuv
knitr, testthat, tibble, rmarkdown, rworldmap
knitr, testthat, tibble, rmarkdown, rworldmap (>= 1.3.6), vcr
(>= 0.6.0)
ggplot2, testthat, covr, knitr, rmarkdown, curl, jsonlite
devtools, knitr, roxygen2, testthat, ggplot2
rmarkdown, devtools, knitr, roxygen2, testthat, dplyr,
ggplot2
covr, knitr, mockery, rmarkdown, testthat
covr, knitr, mockery, processx, ps, rmarkdown, svglite,
testthat, webfakes
covr, diffr, ggplot2, httr, knitr, microbenchmark,
rstudioapi, rvest, shiny, shinythemes, testthat, xml2
covr, diffr, ggplot2, httr, knitr, markdown, microbenchmark,
rmarkdown, rstudioapi, rvest, shiny, shinythemes, testthat,
xml2
fs, knitr, remotes, testthat (>= 3.0.0), withr
testthat, compare, readr, knitr, rmarkdown, DT, ggplot2,
purrr
roxygen2 (>= 6.0.1), testthat, knitr, rmarkdown, rcrossref
roxygen2 (>= 6.1.0), testthat, knitr, rmarkdown, rcrossref
roxygen2 (>= 7.1.0), testthat, knitr, rmarkdown, rcrossref,
vcr
roxygen2 (>= 6.1.1), testthat, knitr, vcr (>= 0.2.2)
roxygen2 (>= 6.1.1), testthat, knitr, vcr (>= 0.2.6)
roxygen2 (>= 7.1.0), testthat, knitr, rmarkdown, vcr (>=
0.2.6)
roxygen2 (>= 7.1.0), testthat, knitr, rmarkdown, vcr (>=
0.2.6), bibtex
roxygen2 (>= 7.1.0), testthat, knitr, rmarkdown, vcr (>=
0.2.6), bibtex, withr
testthat (>= 1.0.0), DBI, devtools, RSQLite, RPostgreSQL
testthat (>= 1.0.0), DBI, devtools, RSQLite, RPostgreSQL,
knitr, rmarkdown, dbplyr, raster, ggplot2
knitr, rmarkdown, dplyr, magrittr, ggplot2, DT, testthat
testthat (>= 3.0.0), rdrobust, DIDmultiplegt, broom.mixed,
grf, CausalQueries, metafor, cjoint, lme4, rstanarm, spdep
testthat, covr, knitr, rmarkdown, magrittr
testthat, knitr, lintr, rmarkdown, spelling
rmarkdown, knitr, pander, testthat (>= 3.0.0), utf8
covr, knitr, pander, rmarkdown, testthat (>= 3.0.0), utf8
covr, grDevices, knitr, pander, rmarkdown, testthat (>=
3.0.0), utf8
testthat, leaflet, parallel, rmarkdown, knitr, ggplot2, zoo
testthat, leaflet, parallel, rmarkdown, knitr, ggplot2, zoo,
lintr
testthat, leaflet, parallel, rmarkdown, knitr, ggplot2, zoo,
lintr, pkgdown
testthat, rmarkdown, knitr, ggplot2, zoo
magrittr, covr, testthat, knitr, rmarkdown, jqr, DT,
tidyverse, dplyr, tidyr, tibble, purrr, lubridate, httr, xml2,
jsonlite, repurrrsive, nycflights13, codemetar
magrittr, covr, testthat, knitr, rmarkdown, jqr, DT, tibble,
purrr, lubridate, httr, xml2, jsonlite, repurrrsive,
nycflights13, spelling
testthat, knitr, rmarkdown, ggplot2, survey, data.table,
microbenchmark
testthat, knitr, rmarkdown, ggplot2, survey, data.table,
microbenchmark, sf
ape, testthat, knitr, rmarkdown, covr, vcfR
ape, testthat, knitr, markdown, rmarkdown, covr
roxygen2 (>= 5.0.1), knitr, testthat, ggplot2, lubridate,
scales, covr
roxygen2 (>= 6.0.1), knitr, testthat, ggplot2, lubridate,
scales
roxygen2, provSummarizeR, provViz (>= 1.0.6), testthat
ggplot2, provSummarizeR, roxygen2, testthat, vroom
RCurl, leaflet, knitr, rmarkdown, testthat, data.table
RCurl, leaflet, knitr, rmarkdown, testthat, data.table,
OSMscale, R.rsp
RCurl, pbapply, OSMscale (>= 0.4.1), leaflet, knitr,
rmarkdown, testthat
RCurl, pbapply, OSMscale (>= 0.4.4), leaflet, knitr,
rmarkdown, testthat
RCurl, leaflet, knitr, rmarkdown, testthat, XML, data.table
RCurl, leaflet, knitr, rmarkdown, testthat, data.table,
OSMscale, R.rsp, raster, R.utils
RCurl, leaflet, knitr, rmarkdown, testthat, roxygen2,
data.table, OSMscale, raster, R.utils, ncdf4, readr, dwdradar,
XML
RCurl, leaflet, knitr, rmarkdown, testthat, roxygen2,
remotes, data.table, OSMscale, raster, R.utils, ncdf4, readr,
dwdradar, XML, sp
RCurl, leaflet, knitr, rmarkdown, testthat, roxygen2,
devtools, remotes, bit64, data.table, OSMscale, raster,
R.utils, ncdf4, readr, dwdradar, XML, sp
RCurl, leaflet, knitr, rmarkdown, testthat, roxygen2,
devtools, remotes, bit64, data.table, OSMscale, raster,
R.utils, ncdf4, readr, dwdradar, XML, sp, rgdal
RCurl, leaflet, knitr, rmarkdown, testthat, roxygen2,
devtools, remotes, bit64, data.table, OSMscale, raster,
R.utils, ncdf4, readr, dwdradar, XML, sp, rgdal, terra, stars
knitr (>= 1.12.3),testthat, rmarkdown (>=
0.9.5),microbenchmark, ggplot2, directlabels
htmlwidgets (>= 0.6.0), rmarkdown, shiny, V8, knitr
htmlwidgets (>= 0.6.0), rmarkdown, shiny, V8, knitr, usethis,
jsonlite
htmlwidgets (>= 1.5.3), rmarkdown, shiny, V8, knitr, usethis,
jsonlite
covr, dplyr, rmarkdown, shiny, sparkline, testthat
covr, crosstalk, dplyr, leaflet, rmarkdown, shiny, sparkline,
testthat
covr, crosstalk, dplyr, leaflet, MASS, rmarkdown, shiny,
sparkline, testthat
covr, crosstalk, dplyr, fontawesome, leaflet, MASS,
rmarkdown, shiny, sparkline, testthat, tippy
shiny (>= 1.5.0), knitr, rmarkdown, htmltools, testthat
shiny (>= 1.5.0), fontawesome (>= 0.3.0), knitr, rmarkdown,
htmltools, testthat
knitr, rmarkdown, testthat (>= 2.1.0), GGIR
knitr, rmarkdown, testthat (>= 2.1.0), data.table, zoo,
readr, lubridate, zip
XLConnect, testthat, genetics, combinat, gdata, gtools, MASS,
mvtnorm, ape (>= 2.4), adegenet
dplyr, testthat, datasets, covr, knitr, rmarkdown
knitr, rmarkdown, testthat, RCurl, ggplot2
knitr, rmarkdown, testthat (>= 2.1.0), RCurl, ggplot2
knitr, rmarkdown, markdown, testthat (>= 2.1.0), ggplot2
testthat, knitr, rmarkdown, stringi, covr
curl, testthat, knitr, rmarkdown, stringi, covr
curl, testthat, knitr, rmarkdown, stringi, covr, spelling
covr, curl, dplyr, knitr, rmarkdown, spelling, stringi,
testthat, xml2
covr, curl, dplyr, knitr, rmarkdown, spelling, stringi,
testthat, tzdb (>= 0.1.1), withr, xml2
covr, curl, dplyr, knitr, rmarkdown, spelling, stringi,
testthat, tzdb (>= 0.1.1), waldo, withr, xml2
datasets, covr, curl, knitr, rmarkdown, spelling, stringi,
testthat, tzdb (>= 0.1.1), waldo, withr, xml2
covr, curl, datasets, knitr, rmarkdown, spelling, stringi,
testthat (>= 3.1.2), tzdb (>= 0.1.1), waldo, withr, xml2
covr, testthat, knitr, rmarkdown, markdown, ggplot2
testthat (>= 2.1.0), igraph, knitr, rmarkdown, ggplot2, tidyr
quanteda (>= 0.9.9.24), knitr, rmarkdown, testthat
quanteda (>= 1.1.0), knitr, rmarkdown, testthat
knitr, pkgload, rmarkdown, quanteda (>= 1.1.0), testthat
knitr, pkgload, rmarkdown, quanteda (>= 3.0), testthat
covr, testthat, knitr, rmarkdown, units, sf
covr, pool, testthat, knitr, rmarkdown, units, sf
covr, knitr, pool, rmarkdown, testthat (>= 3.0.0), withr,
units
covr, knitr, rmarkdown, rprojroot (>= 1.1), testthat
covr, ggplot2, knitr, plotly, testthat, tidyr, xpectr (>=
0.4.0)
covr, ggplot2, knitr, plotly, testthat, tidyr, xpectr (>=
0.4.1)
covr, ggplot2, knitr, testthat, tidyr, xpectr (>= 0.4.1)
testthat (>= 3.0.0), knitr, rmarkdown, future
testthat, knitr, rmarkdown, roxygen2, plotly
testthat, rpart, kernlab, fastICA, RANN, igraph, knitr,
caret, ggplot2, rmarkdown
testthat, rpart, kernlab, fastICA, RANN, igraph, knitr,
caret, ggplot2, rmarkdown, covr
covr, ddalpha, dimRed (>= 0.2.2), fastICA, ggplot2, igraph,
kernlab, knitr, modeldata, pls, RANN, RcppRoll, rmarkdown,
rpart, rsample, RSpectra, testthat (>= 2.1.0), xml2
covr, ddalpha, dimRed (>= 0.2.2), fastICA, ggplot2, igraph,
kernlab, knitr, modeldata, RANN, RcppRoll, rmarkdown, rpart,
rsample, RSpectra, testthat (>= 2.1.0), xml2
covr, ddalpha, dimRed (>= 0.2.2), fastICA, ggplot2, igraph,
kernlab, knitr, modeldata, parsnip (>= 0.1.7), RANN, RcppRoll,
rmarkdown, rpart, rsample, RSpectra, testthat (>= 3.0.0),
workflows, xml2
testthat, rpart, kernlab, fastICA, RANN, igraph, knitr,
rsample (>= 0.0.2), ggplot2, rmarkdown, covr
covr, ddalpha, dimRed (>= 0.2.2), fastICA, ggplot2, igraph,
kernlab, knitr, NMF, pls, RANN, rmarkdown, rpart, rsample,
RSpectra, testthat
covr, ddalpha, dimRed (>= 0.2.2), fastICA, ggplot2, igraph,
kernlab, knitr, pls, RANN, RcppRoll, rmarkdown, rpart, rsample,
RSpectra, testthat
covr, ddalpha, dimRed (>= 0.2.2), fastICA, ggplot2, igraph,
kernlab, knitr, pls, RANN, RcppRoll, rmarkdown, rpart, rsample,
RSpectra, testthat (>= 2.1.0)
covr, ddalpha, dials (>= 0.0.10.9001), ggplot2, igraph,
kernlab, knitr, modeldata, parsnip (>= 0.1.7), RANN, RcppRoll,
rmarkdown, rpart, rsample, RSpectra, testthat (>= 3.0.0),
workflows, xml2
covr, ddalpha, dials (>= 1.0.0), ggplot2, igraph, kernlab,
knitr, modeldata (>= 0.1.1), parsnip (>= 0.1.7), RANN,
RcppRoll, rmarkdown, rpart, rsample, RSpectra, testthat (>=
3.0.0), workflows, xml2
covr, ddalpha, dials (>= 1.0.0), ggplot2, igraph, kernlab,
knitr, modeldata (>= 0.1.1), parsnip (>= 0.1.7), RANN,
RcppRoll, rmarkdown, rpart, rsample, RSpectra, splines2,
testthat (>= 3.0.0), workflows, xml2
colorspace, doParallel, knitr, maps, noncensus, shiny,
testthat
colorspace, doParallel, knitr, lattice, maps, noncensus,
shiny, testthat, tufte, xtable
doParallel, knitr, rmarkdown, shiny, testthat, tufte
doParallel, knitr, shiny, testthat, tufte, xtable
doParallel, knitr, shiny, testthat, tufte
recommenderlab (>= 0.2-7), cmfrec, data.table, knitr,
rmarkdown, kableExtra, testthat
recommenderlab (>= 0.2-7), cmfrec (>= 3.2.0), data.table,
knitr, rmarkdown, kableExtra, testthat
dataone, ggplot2, knitr, png, testthat, rmarkdown
testthat, circular, prevR, scales, fields, methods, move,
knitr, rmarkdown
testthat, circular, prevR, scales, fields, methods, move,
knitr, rmarkdown, sp, rgeos
testthat, Rmpi, knitr, rmarkdown, igraph
igraph, lwgeom, withr, loo, Rmpi, knitr, rmarkdown,
rmapshaper, scales, units, spdep, RSpectra, testthat (>= 3.0.0)
igraph, s2, lwgeom, withr, loo, Rmpi, knitr, rmarkdown,
rmapshaper, scales, units, spdep, RSpectra, testthat (>= 3.0.0)
igraph, s2, lwgeom, withr, leaflet, leafgl, loo, Rmpi, knitr,
rmarkdown, rmapshaper, scales, units, spdep, RSpectra, testthat
(>= 3.0.0)
coda, s2, lwgeom, withr, leaflet, leafgl, loo, Rmpi, knitr,
rmarkdown, rmapshaper, scales, units, RSpectra, testthat (>=
3.0.0), rstudioapi
spelling, knitr, testthat, rmarkdown, stringi
devtools, knitr, rgdal, rmarkdown, testthat
maptools, maps, MASS, sp, knitr, rmarkdown, RColorBrewer,
captioner, rcrossref
testthat (>= 3.0.0), covr, DT, knitr, forcats
covr, testthat, knitr, rmarkdown, fiftystater, ggplot2,
magrittr, viridis, scales, mapproj
covr, testthat, knitr, rmarkdown, ggplot2, magrittr, viridis,
scales, usmap, stringi
knitr, testthat (>= 2.1.0), covr, rmarkdown
supercells, sf, testthat (>= 3.0.0), covr
knitr, testthat, rmarkdown, covr, spelling, devtools,
eurostat, ggplot2
testthat, knitr, rmarkdown, cowplot, ggplot2, pbapply,
fastglm
boot, furrr, future, geepack, knitr, mice, mitools, modelr,
purrr, rlang, stringr, testthat, tidyverse
boot, furrr, future, geepack, knitr, mice, mitools, modelr,
purrr, rlang, rmarkdown, stringr, testthat, tidyverse
boot, furrr, future, geepack, knitr, mice, mitools, modelr,
purrr, rlang, rmarkdown, stringr, testthat, tidyverse, magic,
formattable, kableExtra
parallel, roxygen2, see, testthat (>= 3.0.0)
forcats, gridExtra, tibble, scales, scatterplot3d, psych,
dummies, testthat
randomForest, DT,colourpicker, shinyjs, gridExtra, tibble,
scales, scatterplot3d, psych, dummies, testthat, pls
snowfall, GA, rgenoud, Rsolnp, numDeriv, optimx, semPlot
snowfall, GA, rgenoud, Rsolnp, numDeriv, optimx, semPlot,
colorspace
snowfall, MASS, GA, caret, glmnet, ISLR, rgenoud, Rsolnp,
numDeriv, optimx, semPlot, colorspace
snowfall, MASS, GA, caret, glmnet, ISLR, lbfgs, Rsolnp,
numDeriv, optimx, semPlot, colorspace
snowfall, MASS, GA, caret, glmnet, ISLR, lbfgs, Rsolnp,
numDeriv, nloptr, optimx, semPlot, colorspace
snowfall, MASS, GA, caret, glmnet, ISLR, lbfgs, Rsolnp,
numDeriv, psych, knitr, nloptr, NlcOptim, optimx, semPlot,
colorspace
snowfall, MASS, GA, caret, glmnet, ISLR, lbfgs, numDeriv,
psych, knitr, nloptr, NlcOptim, optimx, semPlot, colorspace
snowfall, MASS, GA, caret, glmnet, ISLR, lbfgs, numDeriv,
psych, knitr, nloptr, NlcOptim, optimx, semPlot, colorspace,
plyr, matrixStats, stringr
snowfall, markdown, MASS, GA, caret, glmnet, ISLR, lbfgs,
numDeriv, psych, knitr, nloptr, NlcOptim, optimx, semPlot,
colorspace, plyr, matrixStats, stringr
knitr, rmarkdown, OpenImageR, cdparcoord, keras, magick,
partools
covr, CBPS, devtools, estimatr, knitr, rmarkdown, sf,
testthat (>= 3.0.0), USAboundaries
covr, CBPS, devtools, estimatr, knitr, rmarkdown, sf,
testthat (>= 3.0.0), USAboundaries, tibble, htmltools
ape, bookdown, gap, knitr, qqman, rmarkdown, testthat, vcfR
ape, bookdown, data.table, gap, knitr, qqman, rmarkdown,
R.utils, testthat, vcfR
reticulate, keras, knitr, rmarkdown, testthat, covr, lintr
ggExtra, ggplot2, gridExtra, MomTrunc, TTmoment, tmvtnorm
knitr, rmarkdown, bookdown, ggpubr, testthat (>= 3.0.0),
spelling
knitr, rmarkdown, bookdown, R.rsp, ggpubr, testthat (>=
3.0.0), spelling
maps, lattice, latticeExtra, grid, gridExtra, sp
curl, git2r, mockery, pingr, testthat, withr
curl, covr, git2r (>= 0.23.0), knitr, mockery, pkgbuild (>=
1.0.1), pingr, rmarkdown, testthat, withr
brew, callr, curl, covr, git2r (>= 0.23.0), knitr, mockery,
pkgbuild (>= 1.0.1), pingr, rmarkdown, rprojroot, testthat,
withr
brew, callr, codetools, curl, covr, git2r (>= 0.23.0), knitr,
mockery, pkgbuild (>= 1.0.1), pingr, rmarkdown, rprojroot,
testthat, withr
brew, callr, codetools, curl, covr, git2r (>= 0.23.0), knitr,
mockery, pkgbuild (>= 1.0.1), pingr, rmarkdown, rprojroot,
testthat, webfakes, withr
bootES, broom, correlation, datawizard (>= 0.5.0), emmeans,
ftExtra, ggpubr, interactions, knitr, markdown, openxlsx,
openxlsx2, patchwork, performance (>= 0.9.1), psych, report (>=
0.5.1), rmarkdown, see, testthat (>= 3.0.0), VennDiagram
ggplot2, lmtest, ggrepel, boot, bootES, ggsignif, qqplotr,
broom, correlation, datawizard (>= 0.5.0), emmeans, ggpubr,
interactions, knitr, markdown, rmarkdown, openxlsx, openxlsx2,
patchwork, psych, report (>= 0.5.1), see, testthat (>= 3.0.0),
VennDiagram
av, chromote, knitr, lifecycle, officer, pdftools, testthat
(>= 3.0.0), webshot2
covr, knitr, packrat, remotes, reticulate, rmarkdown,
rstudioapi, testthat, uuid, yaml
R6, cli, covr, devtools, knitr, packrat, remotes, reticulate,
rmarkdown, rstudioapi, testthat, uuid, yaml
R6, BiocManager, cli, covr, devtools, knitr, packrat,
remotes, reticulate, rmarkdown, rstudioapi, testthat, uuid,
yaml
R6, BiocManager, cli, covr, devtools, knitr, miniUI, packrat,
remotes, reticulate, rmarkdown, rstudioapi, shiny, testthat,
uuid, yaml
R6, BiocManager, cli, covr, devtools, knitr, miniUI, packrat,
pak, remotes, reticulate, rmarkdown, rstudioapi, shiny,
testthat, uuid, yaml
BiocManager, cli, covr, devtools, knitr, miniUI, packrat,
pak, R6, remotes, reticulate, rmarkdown, rstudioapi, shiny,
testthat, uuid, yaml
BiocManager, cli, covr, devtools, jsonlite, knitr, miniUI,
packrat, pak, R6, remotes, reticulate, rmarkdown, rstudioapi,
shiny, testthat, uuid, yaml
covr, knitr, packrat, remotes, reticulate, rmarkdown,
rstudioapi, testthat
spelling, testthat, knitr, RSQLite, RPostgres, pacman
HistData, knitr, testthat, rgdal, base64enc
magrittr, knitr, rmarkdown, carData, testthat (>= 3.0.0),
checkmate, tinytest
knitr, kableExtra, rmarkdown, carData, testthat (>= 3.0.0),
checkmate, tinytest
testthat, knitr, rmarkdown, tidyr, RSQLite, DBI, ggplot2
testthat, knitr, rmarkdown, tidyr, RSQLite, ggplot2
testthat, knitr, rmarkdown, RSQLite, ggplot2, lazyeval
testthat, knitr, rmarkdown, RSQLite, sparklyr, ggplot2,
lazyeval, babynames, magrittr
testthat, knitr, rmarkdown, sparklyr, ggplot2, babynames,
magrittr, RPostgreSQL
testthat, knitr, rmarkdown, sparklyr, ggplot2, babynames,
magrittr, RPostgreSQL, DiagrammeR, igraph, htmlwidgets,
webshot, magick, grid
testthat, knitr, rmarkdown, sparklyr, ggplot2, RPostgreSQL,
DiagrammeR, igraph, htmlwidgets, webshot, magick, grid
testthat, knitr, rmarkdown, sparklyr (>= 0.6.2), ggplot2,
RPostgreSQL, DiagrammeR, igraph, htmlwidgets, webshot, magick,
grid
testthat, knitr, rmarkdown, sparklyr (>= 0.6.2), dbplyr,
ggplot2, RPostgreSQL, DiagrammeR, igraph, htmlwidgets, webshot,
magick, grid
testthat, knitr, rmarkdown, sparklyr (>= 0.6.3), ggplot2,
RPostgreSQL, DiagrammeR, igraph, htmlwidgets, webshot, magick,
grid
testthat, knitr, rmarkdown, sparklyr, ggplot2, RPostgreSQL,
igraph, DiagrammeR, htmlwidgets, webshot, magick, grid
testthat, knitr, rmarkdown, sparklyr, ggplot2, igraph,
DiagrammeR, htmlwidgets, webshot, magick, grid
testthat, knitr, rmarkdown, sparklyr, ggplot2, igraph,
DiagrammeR, htmlwidgets, webshot, magick, grid, RSQLite
testthat, knitr, rmarkdown, sparklyr, ggplot2, igraph,
DiagrammeR, RSQLite
testthat, knitr, rmarkdown, sparklyr, igraph, DiagrammeR,
RSQLite
testthat, knitr, rmarkdown, sparklyr, igraph, DiagrammeR,
htmlwidgets, webshot, RSQLite
devtools, ggplot2, ggrepel, knitr, tinytex, rmarkdown,
scales, tufte, tools, spelling
devtools, ggplot2, ggrepel, knitr, tinytex, rmarkdown,
scales, tufte, spelling
BayesFactor, brms, dplyr, httr, knitr, lavaan, lme4,
logspline, rmarkdown, rstanarm, spelling, testthat
BayesFactor, brms, dplyr, httr, ivreg, knitr, lavaan, lme4,
logspline, rmarkdown, rstanarm, spelling, survival, testthat
BayesFactor, brms, httr, ivreg, knitr, lavaan, lme4,
logspline, dplyr, rmarkdown, rstanarm, spelling, survival,
testthat
BayesFactor, brms, ivreg, knitr, lavaan, lme4, dplyr,
rmarkdown, rstanarm, survival, testthat
testthat, magrittr, dplyr, tidyr, readr, knitr, ggplot2,
rmarkdown, gridExtra
testthat, magrittr, dplyr, tidyr, readr, knitr, ggplot2,
rmarkdown, gridExtra, survminer
testthat, magrittr, dplyr, tidyr, readr, knitr, ggplot2,
rmarkdown, gridExtra, survminer, utils, logr
testthat, magrittr, dplyr, tidyr, readr, knitr, rmarkdown,
ggplot2, gridExtra, survminer, utils, logr
testthat, magrittr, dplyr, tidyr, readr, knitr, rmarkdown,
ggplot2, gridExtra, survminer, utils, logr, covr, graphics
testthat, magrittr, dplyr, tidyr, readr, knitr, rmarkdown,
ggplot2, gridExtra, survminer, utils, logr, covr
testthat, magrittr, dplyr, tidyr, readr, knitr, rmarkdown,
ggplot2, gridExtra, survminer, utils, logr, covr, libr
testthat, magrittr, dplyr, tidyr, readr, knitr, rmarkdown,
ggplot2, gridExtra, survminer, utils, logr, covr, libr, devEMF,
patchwork
methods, highr, Cairo, stringr, testthat
methods, highr, Cairo, stringr, testthat, leaflet
methods, highr, Cairo, stringr, testthat, diffobj, leaflet
methods, highr, Cairo, stringr, testthat, diffobj (>= 0.2.3),
leaflet
methods, highr, Cairo, stringr, testthat (>= 3.0.0), leaflet
knitr, rmarkdown, blink, ggplot2, stringdist
covr, devtools, formatR, fortunes, miniUI, rstudioapi, shiny,
shinyjs, testthat
covr, devtools, fortunes, knitr, miniUI, rprojroot,
rstudioapi, shiny, styler, testthat (>= 2.0.0)
covr, devtools, fortunes, knitr, miniUI, rprojroot,
rstudioapi, shiny, styler (>= 1.0.2), testthat (>= 2.0.0)
covr, fortunes, miniUI, rprojroot, rstudioapi, sessioninfo,
shiny, spelling, styler (>= 1.2.0), testthat (>= 3.0.0)
covr, fortunes, miniUI, mockr, rprojroot, sessioninfo, shiny,
spelling, styler (>= 1.2.0), testthat (>= 3.0.2)
hunspell, knitr, rgdal, rmarkdown, testthat
covr, knitr, rmarkdown, testthat, TimeWarp
covr, future, knitr, rmarkdown, TimeWarp
covr, future, knitr, rmarkdown, testthat, TimeWarp
archivist (>= 2.1.2), covr, dplyr, fasterize, future, git2r
(>= 0.18), knitr, parallel, RCurl (>= 1.95-4.8), rgeos,
rmarkdown, TimeWarp
covr, fasterize, future, gdalUtils, git2r (>= 0.18), knitr,
parallel, RCurl (>= 1.95-4.8), rgdal, rgeos, rmarkdown,
TimeWarp
covr, fastdigest, fasterize, future, gdalUtils, googledrive,
httr, qs, knitr, parallel, RCurl (>= 1.95-4.8), rgdal, rgeos,
rmarkdown, sf, stats, testthat, TimeWarp
covr, crayon, fastdigest, fasterize, future, gdalUtils,
googledrive, httr, qs, knitr, parallel, RCurl (>= 1.95-4.8),
rgdal, rgeos, rmarkdown, sf, stats, testthat, TimeWarp
covr, crayon, fastdigest, fasterize, future, googledrive,
httr, lwgeom, qs, knitr, parallel, RCurl (>= 1.95-4.8), rgdal,
rmarkdown, sf, stats, terra (>= 1.5-17), testthat
covr, crayon, fastdigest, fasterize, future, gdalUtils,
googledrive, httr, qs, knitr, parallel, RCurl (>= 1.95-4.8),
rgdal, rgeos, rmarkdown, sf, stats, testthat
covr, crayon, fastdigest, fasterize, future, gdalUtils,
googledrive, httr, lwgeom, qs, knitr, parallel, RCurl (>=
1.95-4.8), rgdal, rgeos, rmarkdown, sf, stats, terra, testthat
gapminder, jsonlite, purrr, rprojroot, testthat, wesanderson,
xml2
gapminder, jsonlite, purrr, rprojroot, testthat (>= 2.1.0),
wesanderson, xml2
roxygen2 (>= 6.0.1), knitr, rmarkdown, testthat, akima,
ggplot2, mapdata, plot3D
roxygen2 (>= 6.1.1), knitr, rmarkdown, testthat, akima,
ggplot2, mapdata, plot3D, vcr (>= 0.2.2)
roxygen2 (>= 6.1.1), knitr, rmarkdown, testthat, akima,
ggplot2, mapdata, plot3D, vcr (>= 0.2.6)
gganimate, knitr, mapdata, maptools, rgdal, rmarkdown
cmocean, gganimate, knitr, mapdata, maptools, rgdal,
rmarkdown
prospectr, parallel, doParallel, testthat, formatR,
rmarkdown, bookdown, knitr
testthat, knitr, haven, readr, readxl, ssh, sys, mongolite,
dplyr, dbplyr, DBI, RMariaDB, RPostgres, sparklyr, RPresto,
nodbi, rmarkdown
testthat, knitr, haven, readr, readxl, ssh, sys, mongolite,
dplyr, dbplyr, DBI, RMariaDB, RPostgres, sparklyr, RPresto (>=
1.4.0), nodbi, rmarkdown
knitr, rmarkdown, rMR, DiagrammeR, FishResp, respirometry,
testthat
knitr, rmarkdown, rMR, DiagrammeR, FishResp, respirometry,
testthat, covr
chron, knitr, rmarkdown, tinytest, remotes
sessioninfo, testthat, knitr, R.utils, rmarkdown, mockery
testthat (>= 2.0.1), knitr (>= 1.2.0), roxygen2 (>= 6.1.1),
rmarkdown (>= 1.10), landscapemetrics (>= 1.5.4), raster (>=
3.5), rgdal, vegan (>= 2.5.7), cluster (>= 2.1.2), ggthemes,
paletteer
knitr, rmarkdown, testthat (>= 3.0.0), magrittr
knitr, rmarkdown, testthat (>= 3.0.0), magrittr, parallel
callr, knitr, rlang, rmarkdown, testthat
testthat, gWidgets2RGtk2 (>= 1.0.6), gWidgets2 (>= 1.0.6),
cairoDevice, RGtk2
spelling, testthat, gWidgets2RGtk2 (>= 1.0.6), gWidgets2 (>=
1.0.6), cairoDevice, RGtk2
ggplot2, knitr, rmarkdown, gridExtra, testthat
knitr, rmarkdown, covr, testthat, png, spelling, markdown,
ggplot2
covr, ggplot2, knitr, markdown, png, rmarkdown, spelling,
testthat (>= 3.0.0)
knitr, rmarkdown, testthat, devtools, evdbayes
knitr, rmarkdown, devtools, evdbayes, ggplot2 (>= 2.2.1)
knitr, rmarkdown, evdbayes, microbenchmark, ggplot2 (>=
2.2.1), testthat
evdbayes, ggplot2 (>= 2.2.1), knitr, microbenchmark,
rmarkdown, testthat
ggplot2 (>= 2.2.1), knitr, microbenchmark, rmarkdown,
testthat
testthat, knitr, rmarkdown, dplyr, ggplot2, lintr, Hmisc,
stringr, rvest
testthat, knitr, rmarkdown, dplyr, ggplot2, lintr, Hmisc,
stringr, rvest, roxygen2
testthat, knitr, rmarkdown, dplyr, ggplot2, Hmisc, stringr,
rvest, roxygen2, covr
testthat, knitr, rmarkdown, dplyr, ggplot2, magrittr, Hmisc,
stringr, rvest, roxygen2, covr
covr, dplyr, ggplot2, Hmisc, knitr, magrittr, rmarkdown,
roxygen2, rvest, stringr, testthat
devtools, knitr, mockr, rmarkdown, rstudioapi, testthat (>=
3.0.2), usethis
knitr, rmarkdown, leaflet, leaflet.extras, ggplot2, scales,
stargazer, viridis
devtools, testthat, rmarkdown, knitr, covr
testthat, rmarkdown, knitr, covr, spelling
rmarkdown, knitr, prettydoc, patchwork, devtools
testthat (>= 3.0.0), knitr, rmarkdown, landscapemetrics
covr, DT, haven, jsonlite, kableExtra, knitr, readr, readxl,
rmarkdown, shinyBS, shinycssloaders, shinythemes, stringr,
testthat, tools, vdiffr
covr, DT, kableExtra, knitr, rmarkdown, testthat, vdiffr
fortunes, stringr, sos, XLConnect, reshape2, ggplot2,
foreign, lattice
fortunes, stringr, sos, XLConnect, reshape2, ggplot2,
foreign, lattice, covr, testthat
fortunes, stringr, sos, XLConnect, reshape2, ggplot2,
foreign, lattice, covr, testthat, spelling
fortunes, stringr, sos, reshape2, ggplot2, foreign, lattice,
covr, testthat, spelling
roxygen2, testthat, knitr, reshape2, maps
testthat, knitr, reshape2, maps, sp, rgeos
roxygen2 (>= 6.0.1), testthat, knitr, reshape2, maps, sp,
rgeos
testthat, knitr, reshape2, maps, sp, rgeos, png, raster
testthat, knitr, sp, rgeos, png, raster, vcr
testthat, knitr, sp, rgeos, png, raster, protolite (>= 2.0),
sf, vcr
testthat, knitr, rmarkdown, sp, rgeos, png, raster, protolite
(>= 2.0), sf, vcr
testthat, knitr, rmarkdown, sp, rgeos, png, raster, protolite
(>= 2.0), sf, vcr (>= 0.5.0)
testthat, knitr, rmarkdown, sp, rgeos, png, raster, protolite
(>= 2.0), sf, randgeo, vcr (>= 0.5.0)
testthat, sp, rgeos, png, raster, protolite (>= 2.0), sf,
randgeo, vcr (>= 0.5.0)
testthat, sp, rgeos, png, raster, protolite (>= 2.0), sf,
randgeo, vcr (>= 0.5.0), knitr, rmarkdown
knitr, RSQLite, maptools, mapview, markdown, curl
knitr, RSQLite, maptools, mapview, rmarkdown, curl
knitr, DBI, RSQLite, maptools, mapview, rmarkdown, curl
knitr, DBI, RSQLite, maptools, mapview, rmarkdown, curl,
rgeos
leaflet (>= 2.0.2), leaflet.extras2, magick, geojsonio, sf,
stars, googledrive (>= 1.0.0), googleCloudStorageR (>= 0.5.1),
rstudioapi (>= 0.7), jsonlite, leafem, raster, rgdal, httr,
digest, spelling, testthat, future, covr, knitr, rmarkdown, png
leaflet.extras2, magick, geojsonio, sf, stars, googledrive
(>= 1.0.0), googleCloudStorageR (>= 0.5.1), rstudioapi (>=
0.7), raster, rgdal, httr, digest, spelling, testthat, future,
covr, knitr, rmarkdown, png
leaflet.extras2, magick, geojsonio, sf, stars, googledrive
(>= 2.0.0), googleCloudStorageR (>= 0.6.0), gargle, raster,
rgdal, httr, digest, spelling, testthat, future, covr, knitr,
rmarkdown, png
terra, raster, tinytest, knitr, rmarkdown
htmlwidgets, leafsync, knitr, rgdal, rmarkdown
maptools (>= 0.8-5), testthat, plyr, XML
maptools (>= 0.8-5), testthat, plyr, stringr, XML
maptools (>= 0.8-5), testthat, XML, maps, rgdal
knitr, roxygen2, rmarkdown, testthat, covr, rgbif (>= 0.9.2),
rvertnet, rinat
MASS, rmarkdown, deldir, orientlib, lattice, misc3d,
rstudioapi, magick, plotrix (>= 3.7-3), tripack, interp,
alphashape3d
MASS, rmarkdown, deldir, orientlib, lattice, misc3d,
rstudioapi, magick, plotrix (>= 3.7-3), tripack, interp,
alphashape3d, tcltk
MASS, rmarkdown, deldir, orientlib, lattice, misc3d,
rstudioapi, magick, plotrix (>= 3.7-3), tripack, interp,
alphashape3d, tcltk, js (>= 1.2), akima
MASS, rmarkdown, deldir, orientlib, lattice, misc3d,
rstudioapi, magick, plotrix (>= 3.7-3), tripack, interp,
alphashape3d, tcltk, js (>= 1.2), akima, webshot2
MASS, rmarkdown, deldir, orientlib, lattice, misc3d,
rstudioapi, magick, plotrix (>= 3.7-3), tripack, interp,
alphashape3d, tcltk, js (>= 1.2), akima, webshot2, downlit,
pkgdown, extrafont
MASS, rmarkdown, deldir, orientlib, lattice, misc3d, magick,
plotrix (>= 3.7-3), tripack, interp, alphashape3d, tcltk, js
(>= 1.2), akima, webshot2, downlit, pkgdown, extrafont, shiny,
manipulateWidget (>= 0.9.0), testthat, markdown
MASS, rmarkdown, deldir (>= 1.0-4), orientlib, lattice,
misc3d, magick, plotrix (>= 3.7-3), tripack, interp,
alphashape3d, tcltk, js (>= 1.2), akima, webshot2, downlit (>=
0.4.0), pkgdown, extrafont, shiny, manipulateWidget (>= 0.9.0),
testthat, markdown, crosstalk
MASS, rmarkdown, deldir (>= 1.0-4), orientlib, lattice,
misc3d, magick, plotrix (>= 3.7-3), tripack, interp,
alphashape3d, tcltk, js (>= 1.2), webshot2 (>= 0.1.0), downlit
(>= 0.4.0), pkgdown (>= 2.0.0), extrafont, shiny,
manipulateWidget (>= 0.9.0), testthat, markdown, crosstalk, V8,
chromote
MASS, rglwidget (>= 0.1.1427), knitr, rmarkdown
MASS, rmarkdown, deldir, orientlib, lattice, misc3d,
rstudioapi
MASS, rmarkdown, deldir, orientlib, lattice, misc3d,
rstudioapi, magick
rmarkdown, knitr, misc3d, V8, manipulateWidget, png, jpeg
testthat(>= 0.7), openssl, httr, markdown, knitr
knitr, rmarkdown, chronosphere, geojsonsf, sp
testthat, knitr, rmarkdown, igraph, network, Matrix
terra, sp (>= 0.9), knitr, rmarkdown, sf, stars, raster
terra (>= 1.6-16), sp (>= 0.9), knitr, rmarkdown, sf, stars,
raster (>= 3.6-3)
tcltk, odfWeave, R2HTML, RColorBrewer, sp
curl, knitr, rmarkdown, tibble, testthat, stars
curl, knitr, rmarkdown, testthat, stars, terra
knitr, rmarkdown, shiny (>= 0.13), miniUI (>= 0.1.1),
rstudioapi (>= 0.6), htmltools
knitr, rmarkdown, ggtree, phytools, testthat
knitr, rmarkdown, ggtree, phytools, testthat, formatR
knitr, mockery, rcmdcheck, rmarkdown, spelling
testthat (>= 2.1.0), knitr, rmarkdown, microbenchmark
ggplot2, knitr, rgl, rmarkdown, testthat (>= 2.1.0)
ggplot2, knitr, rmarkdown, testthat (>= 2.1.0)
openssl, xml2, covr, testthat (>= 2.1.0), withr, pkgload,
mimic.demo, eicu.demo, progress, knitr, rmarkdown, ggplot2
xml2, covr, testthat (>= 3.0.0), withr, mockthat, pkgload,
mimic.demo, eicu.demo, progress, knitr, rmarkdown, ggplot2,
survival, forestmodel, rticles, kableExtra
xml2, covr, testthat (>= 3.0.0), withr, mockthat, pkgload,
mimic.demo, eicu.demo, progress, knitr, rmarkdown, ggplot2,
cowplot, survival, forestmodel, rticles, kableExtra, units,
pdftools, magick
testthat, knitr, rmarkdown, ggplot2, forecast, xts,
weathermetrics, dplyr, vcr
dplyr, forecast, ggplot2, httptest2, knitr, rmarkdown,
testthat (>= 3.0.0), vcr, weathermetrics, xts
roxygen2 (>= 6.0.1), testthat, rmarkdown, knitr, covr
testthat (>= 3.0.0), knitr, rmarkdown, tidyverse
testthat (>= 3.0.0), knitr, rmarkdown, tidyverse, car
testthat (>= 3.0.0), digest, rmarkdown, OpenImageR
knitr, rmarkdown, testthat, sf, dplyr, lubridate, ggforce,
stringr, purrr
datasets, bit64, testthat, knitr, magrittr
datasets, bit64, testthat, knitr, magrittr, feather
datasets, bit64, testthat, knitr, magrittr, clipr, csvy,
feather, fst, jsonlite, readODS (>= 1.6.4), readr, rmatio, xml2
(>= 1.0.0), yaml
datasets, bit64, testthat, knitr, magrittr, clipr, csvy,
feather, fst, jsonlite, readODS (>= 1.6.4), readr, rmatio, xml2
(>= 1.2.0), yaml
datasets, bit64, testthat, knitr, magrittr, clipr, csvy,
feather, fst, hexView, jsonlite, readODS (>= 1.6.4), readr,
rmatio, xml2 (>= 1.2.0), yaml
datasets, bit64, testthat, knitr, magrittr, arrow, clipr,
feather, fst, hexView, jsonlite, pzfx, readODS (>= 1.6.4),
readr, rmarkdown, rmatio, xml2 (>= 1.2.0), yaml
maptools, foreach, knitr, rmarkdown, R.rsp, flextable,
readxl, tibble, readr
covr, testthat (>= 3.0.0), withr, tibble
e1071, reshape, methods, jpeg, png, tkrplot, fftw, rggobi
e1071, rggobi, reshape, methods, jpeg, png, tkrplot, fftw,
foreach, doSNOW
testthat, knitr, rmarkdown, purrr, parallel, dplyr, covr
knitr, rmarkdown, testthat, tidyverse, printr
knitr, rmarkdown, testthat, tidyverse, printr, stringr,
formatR, sandwich
bookdown, cccp, FinCovRegularization, knitr, microbenchmark,
numDeriv, patrick, prettydoc, RiskPortfolios, rmarkdown, R.rsp,
sparseIndexTracking, testthat, xts
bookdown, knitr, numDeriv, prettydoc, rmarkdown, R.rsp,
testthat
knitr, ggplot2, numDeriv, pagedown, prettydoc, rmarkdown,
R.rsp, testthat, viridisLite
knitr, ggplot2, numDeriv, pagedown, portfolioBacktest,
prettydoc, rmarkdown, R.rsp, testthat, viridisLite
knitr, ggplot2, numDeriv, portfolioBacktest, prettydoc,
rmarkdown, R.rsp, testthat, viridisLite
boot, CoxBoost, Daim, mets, party, pec, penalized, pROC,
randomForest, randomForestSRC, rbenchmark, rpart, testthat,
timereg
boot, CoxBoost, Daim, mets, mstate, party, pec, penalized,
pROC, randomForest, randomForestSRC, rbenchmark, rpart,
testthat, timereg (>= 1.9.1)
boot, CoxBoost, Daim, mets, mstate, party, pec, penalized,
pROC, randomForest, randomForestSRC, rbenchmark, rpart,
testthat, knitr, rmarkdown
boot, CoxBoost, Daim, mets, mstate, party, pec, penalized,
pROC, randomForest, randomForestSRC, rbenchmark, rpart,
testthat,
boot, CoxBoost, mets, mstate, party, pec, penalized, pROC,
randomForest, randomForestSRC, rbenchmark, rpart, testthat
boot, Publish, smcfcs, CoxBoost, ipw, SuperLearner, gbm,
glmnetUtils, flexsurv, mets, mstate, party, pec, penalized,
pROC, randomForest, randomForestSRC, rbenchmark, rpart,
testthat, R.rsp
boot, smcfcs, CoxBoost, ipw, SuperLearner, gbm, glmnetUtils,
flexsurv, mets, mstate, party, pec, penalized, pROC,
randomForest, randomForestSRC, rbenchmark, rpart, testthat,
R.rsp
boot, smcfcs, casebase, ipw, gbm, flexsurv, mgcv, mstate,
numDeriv, party, pec, penalized, pROC, randomForest,
randomForestSRC, rpart, scam, SuperLearner, testthat, R.rsp
boot, smcfcs, casebase, ipw, gbm, flexsurv, mgcv, mstate,
nnls, numDeriv, party, pec, penalized, pROC, randomForest,
randomForestSRC, rpart, scam, SuperLearner, testthat, R.rsp
boot, smcfcs, casebase, ipw, gbm, flexsurv, grpreg, hal9001,
mgcv, mstate, nnls, numDeriv, party, pec, penalized, pROC,
randomForest, randomForestSRC, rpart, scam, SuperLearner,
testthat, R.rsp
boot, smcfcs, casebase, glmnet, gbm, flexsurv, grpreg,
hal9001, mgcv, mstate, nnls, numDeriv, party, pec, penalized,
pROC, randomForest, randomForestSRC, rpart, scam, SuperLearner,
testthat, R.rsp
testthat, covr, rmarkdown, dplyr, knitr, usethis
testthat, covr, rmarkdown, dplyr, knitr, usethis, spelling
knitr, rmarkdown, dplyr, magrittr, testthat, webmockr,
jsonlite
knitr, rmarkdown, withr, magrittr, dplyr, testthat, webmockr,
jsonlite
devtools, rmarkdown, knitr, roxygen2, pkgdown, spelling
roxygen2 (>= 6.0.1), knitr, testthat, webmockr, vcr
roxygen2 (>= 6.1.1), knitr, testthat, webmockr, vcr
roxygen2 (>= 6.1.1), knitr, testthat, webmockr, vcr (>=
0.3.0)
roxygen2 (>= 7.1.0), knitr, testthat, webmockr, vcr (>=
0.5.4)
knitr, ggnetwork, ggplot2, viridis, rmarkdown
rmarkdown, knitr, pdftools, rstudioapi, testthat (>= 3.0.0)
Hmisc, Biobase, genefilter, golubEsets, chemometrics
crayon, knitr, methods, pillar, rmarkdown (>= 0.2.65),
testthat, covr
crayon, magrittr, methods, pillar, testthat (>= 2.0.0), covr
covr, crayon, magrittr, methods, pillar, rmarkdown, testthat
(>= 2.0.0)
cli, covr, crayon, magrittr, methods, pillar, rmarkdown,
testthat (>= 2.0.0)
cli, covr, crayon, glue, magrittr, methods, pak, pillar,
rmarkdown, testthat (>= 3.0.0), vctrs (>= 0.2.3), withr
cli, covr, crayon, magrittr, methods, pillar, rmarkdown,
testthat (>= 2.3.0)
cli, covr, crayon, glue, magrittr, methods, pillar,
rmarkdown, testthat (>= 2.3.0)
cli, covr, crayon, glue, magrittr, methods, pillar,
rmarkdown, testthat (>= 2.3.0), vctrs (>= 0.2.3)
cli, covr, crayon, glue, magrittr, methods, pillar,
rmarkdown, testthat (>= 2.3.0), vctrs (>= 0.2.3), withr
cli (>= 3.1.0), covr, crayon, fs, glue, knitr, magrittr,
methods, pillar, rmarkdown, stats, testthat (>= 3.0.0), tibble,
usethis, vctrs (>= 0.2.3), withr
magrittr, dplyr, tidyr, RColorBrewer, testthat (>= 2.1.0)
magrittr, dplyr, tidyr, RColorBrewer, ggplot2, testthat (>=
2.1.0), httpuv
spelling, magrittr, dplyr, tidyr, RColorBrewer, ggplot2,
testthat (>= 2.1.0), httpuv
elliptic, spatstat.core, spatstat (>= 2.0-0), testthat,
stringi
testthat, RobustGaSP, utils, DiceDesign, foreach
Seurat, knitr, reticulate, rmarkdown, testthat,
GenomicRanges, S4Vectors, IRanges, org.Hs.eg.db, reactome.db,
fgsea, AnnotationDbi
ggraph (>= 2.0.0), knitr, magrittr, mapview, rmarkdown, sf,
spelling, taxize, tidygraph, testthat, tibble, USAboundaries,
ggraph (>= 2.0.0), knitr, magrittr, mapview, rmarkdown, sf,
spelling, taxize, tidygraph, testthat, tibble, USAboundaries,
webshot,
ggraph (>= 2.0.0), knitr, magrittr, mapview, rmarkdown, sf,
spelling, taxize, tidygraph, testthat, tibble, USAboundaries,
vcr
testthat, rgeos, knitr, rmarkdown, magrittr
sf (>= 0.5.2), testthat, rgeos, knitr, rmarkdown, magrittr
knitr, magrittr, rgeos, rmarkdown, testthat
knitr, magrittr, rgeos, rmarkdown, testthat, rgdal
knitr, magrittr, rgdal, rgeos, rmarkdown, testthat (>= 2.1.0)
knitr, magrittr, rgdal, rgeos, rmarkdown, testthat (>=
2.1.0), covr
knitr, magrittr, rgdal, rgeos, rmarkdown, testthat (>=
2.1.0), covr, units
shiny (>= 0.11), tufte, testthat, digest
shiny (>= 0.11), tufte, testthat, digest, dygraphs, tibble
shiny (>= 0.11), tufte, testthat, digest, dygraphs, tibble,
callr (>= 2.0.0)
shiny (>= 0.11), tufte, testthat, digest, dygraphs, tibble,
fs, callr (>= 2.0.0)
shiny (>= 0.11), tufte, testthat, digest, dygraphs, tibble,
fs, pkgdown, callr (>= 2.0.0)
shiny (>= 0.11), tufte, testthat, digest, tibble
tinytex, shiny (>= 0.11), tufte, testthat, digest, tibble
shiny (>= 1.6.0), tufte, testthat (>= 3.0.0), digest,
dygraphs, vctrs, tibble, fs, rsconnect, withr (>= 2.4.2), bslib
(>= 0.2.5.1), sass (>= 0.4.0)
digest, dygraphs, fs, rsconnect, downlit (>= 0.4.0), katex
(>= 1.4.0), sass (>= 0.4.0), shiny (>= 1.6.0), testthat (>=
3.0.3), tibble, tufte, vctrs, withr (>= 2.4.2)
shiny (>= 0.11), tufte, testthat, digest, dygraphs, tibble,
fs, pkgdown
shiny (>= 0.11), tufte, testthat, digest, dygraphs, tibble,
fs, pkgdown, rsconnect
shiny (>= 0.11), tufte, testthat, digest, dygraphs, tibble,
fs, rsconnect
shiny (>= 0.11), tufte, testthat, digest, dygraphs, vctrs,
tibble, fs, rsconnect
shiny (>= 0.11), tufte, testthat (>= 2.0.0), digest,
dygraphs, vctrs, tibble, fs, rsconnect, withr (>= 2.3.0)
shiny (>= 1.6.0), tufte, testthat (>= 3.0.0), digest,
dygraphs, vctrs, tibble, fs, rsconnect, withr (>= 2.3.0), bslib
(>= 0.2.4), sass
shiny (>= 1.6.0), tufte, testthat (>= 3.0.0), digest,
dygraphs, vctrs, tibble, fs, rsconnect, withr (>= 2.4.2), bslib
(>= 0.2.4), sass (>= 0.3.1)
knitr, rmarkdown, plotrix, lme4, ggplot2, merTools, pwr
knitr, rmarkdown, plotrix, ggplot2, lme4, merTools, pwr
knitr, rmarkdown, plotrix, ggplot2, lme4, merTools, pwr,
pacman
knitr, rmarkdown, plotrix, ggplot2, lme4, merTools, pwr,
AICcmodavg, pals
knitr, rmarkdown, plotrix, ggplot2, lme4, merTools, pwr,
AICcmodavg, pals, testthat (>= 3.0.0)
knitr, rmarkdown, plotrix, ggplot2, lme4, merTools, pwr,
AICcmodavg, pals, testthat (>= 3.0.0), corrplot
knitr, rmarkdown, plotrix, ggplot2, lme4, merTools, pwr,
AICcmodavg, pals, testthat (>= 3.0.0), corrplot, cocor
grDevices, graphics, testthat, roxygen2, rmarkdown, pkgdown,
covr, spelling, dplyr, DT, ggplot2
testthat (>= 2.1.0), covr, spelling, knitr
magrittr, knitr, ggplot2, reshape2, rmarkdown, lattice
testthat, covr, knitr, rmarkdown, readr, stringr, tidyr,
dplyr
testthat, covr, knitr, rmarkdown, readr, stringr, tidyr,
dplyr, Nozzle.R1
testthat, covr, rgl, ecr, emoa, cdata, dplyr, reshape2
lattice, quantreg, nlme, rpart, polspline
lattice, quantreg, nlme, rpart, polspline, multcomp
lattice, quantreg, nlme, rpart, polspline, multcomp, boot
lattice, quantreg, nlme, rpart, polspline, multcomp, boot,
tcltk
boot, tcltk, plotly (>= 4.5.6), rstan, loo, knitr, mice
boot, tcltk, plotly (>= 4.5.6), knitr, mice, rmsb
boot, tcltk, plotly (>= 4.5.6), knitr, mice, rmsb, nnet, VGAM
assertthat, httptest, knitr, rmarkdown, testthat
here, httptest, knitr, rmarkdown, testthat
rgdal, knitr (>= 1.12.3), testthat (>= 0.9.1), httr (>=
1.1.0), devtools (>= 1.10.0), rnaturalearthdata (>= 0.1.0),
rnaturalearthhires (>= 0.1.0), raster (>= 2.5-2), rgeos
covr, httptest, testthat (>= 2.1.0), knitr, rmarkdown,
ggplot2
testthat, roxygen2, knitr, taxize, dplyr
testthat, roxygen2, knitr, taxize, ncdf4, leaflet, geojsonio,
lawn
testthat, roxygen2, knitr, taxize, ncdf4, leaflet, geojsonio,
lawn, rgdal
testthat, roxygen2, knitr, taxize, ncdf4, leaflet, geojsonio,
lawn, rgdal, covr
roxygen2 (>= 5.0.1), testthat, knitr, taxize, ncdf4, leaflet,
rgdal, rmarkdown, purrr, covr, ggmap
roxygen2 (>= 5.0.1), testthat, knitr, taxize, ncdf4, leaflet,
rgdal, rmarkdown, purrr, covr, ggmap, ropenaq
roxygen2 (>= 6.0.1), testthat, knitr, taxize, ncdf4, leaflet,
rgdal, rmarkdown, purrr, ggmap, ropenaq
roxygen2 (>= 6.1.1), testthat, knitr, taxize, ncdf4, raster,
leaflet, rgdal, rmarkdown, purrr, ggmap, ropenaq, vcr
roxygen2 (>= 6.1.1), testthat, knitr, taxize, ncdf4, raster,
leaflet, rgdal, rmarkdown, purrr, ggmap, ropenaq, vcr (>=
0.2.2)
roxygen2 (>= 6.1.1), testthat, knitr, taxize, ncdf4, raster,
leaflet, rgdal, sf, rmarkdown, purrr, ggmap, ropenaq, vcr (>=
0.2.2)
roxygen2 (>= 7.1.0), testthat, knitr, taxize, ncdf4, raster,
leaflet, rgdal, sf, rmarkdown, purrr, ggmap, ropenaq, vcr (>=
0.5.4), webmockr
roxygen2 (>= 7.1.0), testthat, knitr, taxize, ncdf4, raster,
leaflet, rgdal, rmarkdown, purrr, ggmap, ropenaq, vcr (>=
0.5.4), webmockr
roxygen2 (>= 7.1.0), testthat, taxize, ncdf4, raster,
leaflet, rgdal, purrr, ggmap, vcr (>= 0.5.4), webmockr
ggplot2, testthat, covr, knitr, markdown, rmarkdown,
RColorBrewer, vcr
roxygen2 (>= 5.0.1), testthat, knitr, covr, rmarkdown,
lubridate, rcrossref
roxygen2 (>= 6.0.1), testthat, knitr, covr, rmarkdown,
lubridate, rcrossref
roxygen2 (>= 6.0.1), testthat, knitr, covr, rmarkdown,
lubridate, rcrossref, purrr
roxygen2 (>= 6.0.1), testthat, knitr, covr, rmarkdown,
lubridate, rcrossref, lintr
roxygen2 (>= 6.0.1), testthat, knitr, covr, rmarkdown,
rcrossref, lintr
roxygen2 (>= 6.0.1), testthat, knitr, covr, rmarkdown, lintr
testthat (>= 2.1.0), knitr, rmarkdown, viridis
testthat (>= 3.0.0), knitr, rmarkdown, withr, vdiffr
dplyr, forcats, knitr, patchwork, pbmcapply, RColorBrewer,
rmarkdown, spelling, testthat, tibble, tidyr, tidyverse
testthat, MASS, pracma, mvtnorm, cumstats
devtools, cowplot, knitr, rmarkdown, testthat (>= 2.1.0)
devtools, knitr, rmarkdown, testthat (>= 2.1.0)
testthat, knitr, rmarkdown, usethis, covr
gapminder, knitr, rmarkdown, readr, dplyr, tidyr, lubridate,
stringr
gapminder, palmerpenguins, knitr, rmarkdown, readr, dplyr,
tidyr, lubridate, stringr
datasets, doFuture, doParallel, future, ggplot2, grDevices,
knitr, MASS, parallel, rmarkdown, testthat, utils
datasets, doFuture, doParallel, future, ggplot2, grDevices,
knitr, parallel, rmarkdown, testthat, utils
covr, datasets, doFuture, doParallel, future, ggplot2,
grDevices, ivgets, knitr, parallel, rmarkdown, testthat, utils
MASS, lattice, boot, MPV, xtable, ggplot2
MASS, lattice, boot, MPV, xtable, ggplot2, RColorBrewer
MASS, lattice, boot, cluster, MPV, xtable, ggplot2,
RColorBrewer, grid, reshape2
grid, MASS, lattice, boot, cluster, Matrix, MPV, xtable,
ggplot2, RColorBrewer, reshape2
grid, MASS, lattice, boot, cluster, Matrix, robust,
fit.models, MPV, xtable, ggplot2, RColorBrewer, reshape2,
sfsmisc, catdata
grid, MASS, lattice, boot, cluster, Matrix, MPV, xtable,
ggplot2, RColorBrewer, reshape2, sfsmisc
grid, MASS, lattice, boot, cluster, Matrix, robust,
fit.models, MPV, xtable, ggplot2, GGally, RColorBrewer,
reshape2, sfsmisc, catdata
grid, MASS, lattice, boot, cluster, Matrix, robust,
fit.models, MPV, xtable, ggplot2, GGally, RColorBrewer,
reshape2, sfsmisc, catdata, doParallel, foreach, skewt
grid, lattice, robustbase, pcaPP, mvtnorm
grid, lattice, cluster, mclust, MASS, ellipse
digest, ggplot2, reshape2, rootSolve, xtable,
digest, reshape2, microbenchmark, emmeans (>= 1.4),
estimability
reshape2, microbenchmark, emmeans (>= 1.4), estimability,
MatrixModels, heavy, lqmm, rlme, robustvarComp, MASS, lemon,
RColorBrewer, skewt, fs, dplyr, ggh4x
reshape2, microbenchmark, emmeans (>= 1.4), estimability,
heavy, lqmm, rlme, robustvarComp, MASS, lemon, RColorBrewer,
skewt, fs, dplyr, ggh4x
reshape2, microbenchmark, emmeans (>= 1.4), estimability,
lqmm, rlme, MASS, lemon, RColorBrewer, skewt, fs, dplyr, ggh4x
covr, knitr, rENA (>= 0.1.6), rmarkdown, testthat
covr, justifier (>= 0.2.0), knitr, rENA (>= 0.1.6),
rmarkdown, rstudioapi, testthat
covr, haven (>= 2.4), justifier (>= 0.2), knitr, openxlsx (>=
4.2), rENA (>= 0.1.6), rmarkdown, rstudioapi, testthat
covr, googlesheets4, haven (>= 2.4), justifier (>= 0.2),
knitr, openxlsx (>= 4.2), preregr (>= 0.1.9), rENA (>= 0.1.6),
readxl, rmarkdown, rstudioapi, testthat, writexl, XLConnect
covr, googlesheets4, haven (>= 2.4), justifier (>= 0.2),
knitr, limonaid, openxlsx (>= 4.2), preregr (>= 0.1.9), rENA
(>= 0.1.6), readxl, rmarkdown, rstudioapi, testthat, textreadr,
writexl, XLConnect
tables, Hmisc, car, mvtnorm, scatterplot3d, HH
crayon, knitr, RMariaDB, rmarkdown, RPostgres, RSQLite
covr, crayon, knitr, RMariaDB, testthat (>= 3.0.0),
rmarkdown, RPostgres, RSQLite
testthat, covr, knitr, rmarkdown, igraph, lintr
knitr, rmarkdown, testthat, zoo, roll, microbenchmark,
RcppParallel
testthat, knitr, proj4, ggplot2, rgdal, tidyr, alphahull
testthat, knitr, proj4, ggplot2, rgdal, tidyr, alphahull,
rmarkdown
rmarkdown, knitr, DiagrammeR, DiagrammeRsvg, htmltools,
testthat (>= 3.0.0)
rmarkdown, knitr, DiagrammeR, DiagrammeRsvg, rsvg, htmltools,
testthat (>= 3.0.0)
rmarkdown, knitr, rswipl, DiagrammeR, DiagrammeRsvg, rsvg,
htmltools, testthat (>= 3.0.0)
CompQuadForm (>= 1.4.1), knitr, testthat, rmarkdown
knitr, lazyeval, plotly, rmarkdown, usethis, testthat
knitr, rmarkdown, lintr, ggplot2, testthat, openair,
devtools, animation, rworldmap, ggmap
knitr, rmarkdown, lintr, ggplot2, testthat, openair,
devtools, animation, rworldmap, ggmap, viridis
knitr, rmarkdown, lintr, ggplot2, testthat, openair,
devtools, rworldmap, ggmap, viridis
webmockr (>= 0.6.2), ggplot2, knitr, rmarkdown, rworldmap,
testthat (>= 2.1.0), vcr (>= 0.5.0), viridis
knitr, rmarkdown, lintr, ggplot2, testthat, openair,
devtools, rworldmap, viridis
ggplot2, knitr, rmarkdown, rworldmap, testthat, vcr (>=
0.5.0), viridis
magrittr, knitr, markdown, rmarkdown, prettydoc
roxygen2 (>= 5.0.1), testthat, knitr, rmarkdown
testthat, knitr, rcrossref, handlr, httpuv
testthat, knitr, rcrossref, handlr, httpuv, vcr, covr
testthat, knitr, rcrossref, handlr, httpuv, vcr
GPArotation, jmvcore (>= 1.0), MBESS (>= 4.8)
GPArotation, jmvcore (>= 1.0), MBESS (>= 4.8), rmarkdown,
testthat
effectsize, GGally (>= 2.0), GPArotation (>= 2014.11),
jmvcore (>= 1.0), MBESS (>= 4.8), rio (>= 0.5.10), rmarkdown,
testthat
GGally (>= 2.0), GPArotation (>= 2014.11), jmvcore (>= 1.0),
MBESS (>= 4.8), rmarkdown, testthat
effectsize, GGally (>= 2.0), GPArotation (>= 2014.11),
jmvcore (>= 1.0), MBESS (>= 4.8), rmarkdown, testthat
cartography, raster, testthat, covr, withr, knitr, rmarkdown
cartography, raster, testthat, covr, withr
gridExtra, knitr, onion, orientlib, rgl, sphereplot, testthat
gridExtra, knitr, onion, orientlib, testthat
knitr, onion, orientlib, testthat, rmarkdown
knitr, onion, orientlib, testthat, rmarkdown, rgl
knitr (>= 1.10.5), rmarkdown (>= 0.7), testthat, RNeXML,
phylobase
knitr (>= 1.12), rmarkdown (>= 0.7), testthat, RNeXML,
phylobase, gdata (>= 2.17.0), MCMCglmm, fulltext (>= 0.1.6)
knitr (>= 1.12), rmarkdown (>= 0.7), testthat, RNeXML,
phylobase, MCMCglmm, fulltext (>= 0.1.6)
knitr (>= 1.12), rmarkdown (>= 0.7), testthat, RNeXML,
phylobase, MCMCglmm, fulltext (>= 0.1.6), readxl
fulltext (>= 0.1.6), knitr (>= 1.12), MCMCglmm, phylobase,
readxl, rmarkdown (>= 0.7), RNeXML, testthat
knitr (>= 1.12), MCMCglmm, phylobase, readxl, rmarkdown (>=
0.7), RNeXML, testthat
testthat, crayon, zip, mockery, withr, covr
covr, crayon, rmarkdown, testthat, withr, zip
covr, crayon, data.table, digest, rmarkdown, testthat, uuid,
zip
covr, crayon, data.table, digest, rmarkdown, testthat, uuid,
ulid, zip
grDevices, graphics, Matrix, lattice, knitr
grDevices, graphics, Matrix, lattice, knitr, rmarkdown
grDevices, graphics, Matrix, lattice, gmp, knitr, rmarkdown
Rgraphviz (>= 1.19.2), tools (>= 2.9.1), testthat
testthat (>= 0.8.0), knitr, devtools, rmarkdown
testthat (>= 0.8.0), knitr, devtools, rmarkdown, covr
covr, devtools, knitr, rmarkdown, testthat (>= 0.8.0)
covr, devtools, knitr, rmarkdown, testthat (>= 2.1.0),
R.methodsS3, R.oo
covr, devtools, rmarkdown, testthat (>= 2.1.0), R.methodsS3,
R.oo
covr, R.methodsS3, R.oo, rmarkdown, testthat (>= 3.1.2),
covr, R.methodsS3, R.oo, rmarkdown, testthat (>= 3.1.2), yaml
covr, R.methodsS3, R.oo, rmarkdown (>= 2.16), testthat (>=
3.1.2), yaml
testthat (>= 2.1.0), tinytest (>= 1.1.0), knitr, rmarkdown
parallel, ggplot2 (>= 2.2.0), testthat (>= 2.0.0)
tkrplot, rgl, sp, geoR, RandomFields, sm
tkrplot, rgl, sp, geoR, RandomFields, akima, MASS, denstrip,
lattice, sm, maps, mgcv
tkrplot, rgl, sp, geoR, RandomFields, akima, MASS, denstrip,
lattice, sm, maps, mgcv, colorspace, ggplot2
tkrplot, rgl, sp, geoR, RandomFields, interp, MASS, denstrip,
lattice, sm, maps, mgcv, colorspace, ggplot2
curl, magrittr, readr, tidyr, dplyr, devtools, assertr,
lubridate, ggplot2
assertr, curl, datacheckr, devtools, dplyr, ggplot2,
lubridate, magrittr, readr, tidyr, testthat, knitr, rmarkdown
assertr, curl, datacheckr (>= 0.1.0), devtools, dplyr,
ggplot2, lubridate, magrittr, readr, tidyr, testthat, knitr,
rmarkdown
plink, testthat, roxygen2, ggplot2, reshape2, gridExtra,
numDeriv
plink, testthat, roxygen2, ggplot2, reshape2, gridExtra,
numDeriv, knitr, mirt
testthat, roxygen2, ggplot2, reshape2, gridExtra, numDeriv,
knitr, mirt
plink, testthat, roxygen2, ggplot2, reshape2, gridExtra
testthat, roxygen2, ggplot2, reshape2, gridExtra, numDeriv,
knitr, mirt, markdown
testthat, vcr (>= 0.2.0), knitr, rmarkdown, R.rsp
testthat, htmltools, knitr, rmarkdown, devtools, dplyr,
data.table
testthat, knitr, rmarkdown, devtools, dplyr, data.table
xml2, knitr, testthat, webmockr, vcr (>= 0.2.6)
xml2, knitr, rmarkdown, testthat, webmockr, vcr (>= 0.2.6)
ggplot2, dplyr, purrr, tidyr, knitr, testthat, covr, markdown
testthat, rmarkdown, markdown, knitr, covr
flexsurv, flexsurvcure, knitr, rms, testthat
flexsurv, flexsurvcure, knitr, rms, testthat, covr
flexsurv, flexsurvcure, knitr, rmarkdown, rms, testthat, covr
testthat, mockr, knitr, withr, rmarkdown
covr, knitr, lifecycle, mockr, rmarkdown, testthat (>=
3.0.0), withr
knitr, rmarkdown, DBI, RSQLite, parallel, testthat
knitr, rmarkdown, DBI, RSQLite, parallel, RUnit
knitr, rmarkdown, DBI, RSQLite, parallel, tinytest
sparklyr, RPostgreSQL, RPostgres, knitr, rmarkdown, testthat
RSQLite, igraph, DiagrammeR, knitr, rmarkdown, testthat
DBI, RSQLite, igraph, DiagrammeR, DiagrammeRsvg, rsvg, knitr,
rmarkdown, testthat
DBI, RSQLite, rqdatatable, igraph, DiagrammeR, knitr,
rmarkdown, testthat
DBI, RSQLite, rqdatatable, igraph, DiagrammeR, knitr,
rmarkdown, RUnit
DBI, RSQLite, rqdatatable, igraph, DiagrammeR, knitr,
rmarkdown, RUnit, yaml
DBI, RSQLite, rqdatatable (>= 1.2.5), igraph, DiagrammeR,
knitr, rmarkdown, RUnit, yaml
DBI, RSQLite, rqdatatable (>= 1.2.6), igraph, DiagrammeR,
knitr, rmarkdown, RUnit, yaml
DBI, RSQLite, rqdatatable (>= 1.2.7), igraph, DiagrammeR,
knitr, rmarkdown, RUnit, yaml
DBI, RSQLite, rqdatatable (>= 1.2.8), igraph, DiagrammeR,
knitr, rmarkdown, yaml, tinytest
DBI, RSQLite, rqdatatable (>= 1.2.9), igraph, DiagrammeR,
knitr, rmarkdown, yaml, tinytest
DBI, RSQLite, rqdatatable (>= 1.3.0), igraph, DiagrammeR,
knitr, rmarkdown, yaml, tinytest
DBI, RSQLite, rqdatatable (>= 1.3.0), igraph, knitr,
rmarkdown, yaml, tinytest
covr, knitr, magrittr, rmarkdown, testthat (>= 2.1.0)
testthat, knitr, rmarkdown, zoo, biwavelet, dplyr
ggplot2, knitr, rmarkdown, testthat, vcr (>= 0.2.6),
ISOcodes, mockery
knitr, rmarkdown, testthat, vcr (>= 0.5.0), ISOcodes, mockery
knitr, rmarkdown, testthat, ggplot2, reshape2
knitr, rmarkdown, kableExtra, imager, devtools
knitr, rmarkdown, kableExtra, imager, devtools, lattice,
rgdal, igraph, randomForest, e1071
ggplot2, testthat, rmarkdown, knitr, AmesHousing
ggplot2, testthat, rmarkdown, knitr, AmesHousing, recipes (>=
0.1.4), broom
ggplot2, testthat, rmarkdown, knitr, AmesHousing, recipes (>=
0.1.4), broom, xml2, covr
ggplot2, testthat, rmarkdown, knitr, AmesHousing, recipes (>=
0.1.4), broom, xml2, covr, modeldata
utils, stats, ggplot2, testthat, rmarkdown, knitr, recipes
(>= 0.1.4), broom, xml2, covr, modeldata
broom, covr, ggplot2, knitr, modeldata, recipes (>= 0.1.4),
rmarkdown, stats, testthat, utils, xml2
broom, covr, ggplot2, knitr, modeldata, recipes (>= 0.1.4),
rmarkdown, stats, testthat (>= 3.0.0), utils, xml2
broom, covr, ggplot2, knitr, modeldata, recipes (>= 0.1.4),
rmarkdown, stats, testthat (>= 3.0.0), utils, whisker, withr,
xml2
knitr, digest, microbenchmark, rJava, xtable
knitr, testthat, devtools, rstudioapi, processx
scrypt, knitr, testthat, rmarkdown (>= 0.9.2)
scrypt, knitr, testthat, rmarkdown (>= 0.9.6)
scrypt, knitr, testthat, rmarkdown (>= 1.1)
knitr, testthat, rmarkdown (>= 1.1), plumber (>= 0.3.2),
shiny, sourcetools, xtable
knitr, testthat, rmarkdown (>= 1.1), plumber (>= 0.3.2),
reticulate, shiny, sourcetools, xtable
RCurl, callr, httpuv, knitr, plumber (>= 0.3.2), reticulate,
rmarkdown (>= 1.1), shiny, sourcetools, testthat, xtable
MASS, RCurl, callr, httpuv, knitr, plumber (>= 0.3.2),
reticulate, rmarkdown (>= 1.1), shiny, sourcetools, testthat,
xtable
scrypt, knitr, testthat, rmarkdown (>= 1.1), plumber (>=
0.3.2)
xml2, rvest, graphics, testthat, jpeg, knitr, rmarkdown,
purrr
knitr, rmarkdown, tidyr, ggplot2, ggraph
knitr, rmarkdown, tidyr, ggplot2, ggraph, roxygen2
covr, devtools, eha, ggplot2, knitr, rmarkdown, rstpm2,
survival, testthat, tidyverse
covr, devtools, dplyr, eha, rmarkdown, rstpm2, survival,
testthat, usethis, viridis
covr, devtools, dplyr, eha, rmarkdown, rstpm2, survival,
testthat, usethis
covr, devtools, eha, knitr, rmarkdown, rstpm2, survival,
testthat, tidyverse
covr, devtools, dplyr, eha, knitr, rmarkdown, rstpm2,
survival, testthat
covr, devtools, dplyr, eha, knitr, rmarkdown, rstpm2,
survival, testthat, usethis, viridis
aire.zmvm, testthat, covr, knitr, rmarkdown, ggplot2, maps,
mapproj, sp, ggmap, gstat, zoo, tidyr
parallel, testthat, knitr, rmarkdown, markdown
emmeans (> 1.3.5.1), Vdgraph, conf.design, DoE.base, FrF2
emmeans, Vdgraph, conf.design, DoE.base, FrF2
testthat, devtools, ggplot2, rpdo (>= 0.2.1)
devtools, ggplot2, rpdo (>= 0.2.1), testthat, tibble
knitr, rmarkdown, testthat, covr, ggplot2
ggplot2, testthat (>= 3.0.0), tibble, tidyr, scales
RUnit, RcppEigen, BH (>= 1.58), parallel, KernSmooth, RCurl,
loo (>= 0.1.6), shinystan (>= 2.1.0), rstudioapi, Matrix, knitr
RUnit, RcppEigen, BH (>= 1.60), parallel, KernSmooth, RCurl,
loo (>= 0.1.6), shinystan (>= 2.1.0), rstudioapi, Matrix, knitr
RUnit, RcppEigen, BH (>= 1.60), parallel, KernSmooth, RCurl,
loo (>= 0.1.6), shinystan (>= 2.2.1), rstudioapi, Matrix, knitr
RUnit, RcppEigen, BH (>= 1.62), parallel, KernSmooth, loo (>=
0.1.6), shinystan (>= 2.2.1), bayesplot, rstantools,
rstudioapi, Matrix, knitr (>= 1.15.1)
RUnit, RcppEigen, BH (>= 1.62), parallel, KernSmooth, loo (>=
1.0.0), shinystan (>= 2.2.1), bayesplot, rstantools,
rstudioapi, Matrix, knitr (>= 1.15.1)
RUnit, RcppEigen, BH (>= 1.62), parallel, KernSmooth, loo (>=
1.0.0), shinystan (>= 2.2.1), bayesplot (>= 1.1.0), rstantools
(>= 1.1.0), rstanarm (>= 2.14.1), rstudioapi, Matrix, knitr (>=
1.15.1)
RUnit, RcppEigen (>= 0.3.3.3.0), BH (>= 1.62), parallel,
KernSmooth, loo (>= 1.0.0), shinystan (>= 2.2.1), bayesplot,
rstantools, rstudioapi, Matrix, knitr (>= 1.15.1)
RUnit, RcppEigen (>= 0.3.3.3.0), BH (>= 1.65), parallel,
KernSmooth, loo (>= 1.0.0), shinystan (>= 2.2.1), bayesplot,
rstantools, rstudioapi, Matrix, knitr (>= 1.15.1)
RUnit, RcppEigen (>= 0.3.3.3.0), BH (>= 1.66), parallel,
KernSmooth, shinystan (>= 2.3.0), bayesplot (>= 1.5.0),
rmarkdown, rstantools, rstudioapi, Matrix, knitr (>= 1.15.1)
RUnit, RcppEigen (>= 0.3.3.3.0), BH (>= 1.72.0-2), parallel,
KernSmooth, shinystan (>= 2.3.0), bayesplot (>= 1.5.0),
rmarkdown, rstantools, rstudioapi, Matrix, knitr (>= 1.15.1)
RUnit, RcppEigen (>= 0.3.3.3.0), BH (>= 1.72.0-2), parallel,
KernSmooth, shinystan (>= 2.3.0), bayesplot (>= 1.5.0),
rmarkdown, rstantools, rstudioapi, Matrix, knitr (>= 1.15.1),
V8
RUnit, RcppEigen, BH (>= 1.58), StanHeaders (>= 2.7.0),
parallel, KernSmooth, RCurl, loo
RUnit, RcppEigen, BH (>= 1.58), StanHeaders (>= 2.8.0),
parallel, KernSmooth, RCurl, loo, rstudioapi, Matrix
RUnit, RcppEigen, BH (>= 1.58), StanHeaders (>= 2.9.0),
parallel, KernSmooth, RCurl, loo, rstudioapi, Matrix
arm, gamm4, gridExtra, HSAUR3, KernSmooth, knitr, MASS,
rmarkdown, roxygen2, testthat (>= 1.0.2)
arm, gridExtra, HSAUR3, KernSmooth, knitr, MASS, mgcv,
rmarkdown, roxygen2, testthat (>= 1.0.2)
arm, betareg, digest, gridExtra, HSAUR3, KernSmooth, knitr
(>= 1.15.1), MASS, mgcv, rmarkdown, roxygen2, testthat (>=
1.0.2)
arm, betareg, digest, gridExtra, HSAUR3, knitr (>= 1.15.1),
MASS, mgcv, rmarkdown, roxygen2, testthat (>= 1.0.2)
arm, betareg, data.table (>= 1.10.0), digest, gridExtra,
HSAUR3, knitr (>= 1.15.1), MASS, mgcv (>= 1.8-13), rmarkdown,
roxygen2, testthat (>= 1.0.2)
betareg, data.table (>= 1.10.0), digest, gridExtra, HSAUR3,
knitr (>= 1.15.1), MASS, mgcv (>= 1.8-13), rmarkdown, roxygen2,
testthat (>= 1.0.2)
betareg, data.table (>= 1.10.0), digest, gridExtra, HSAUR3,
knitr (>= 1.15.1), MASS, mgcv (>= 1.8-13), rmarkdown, roxygen2,
StanHeaders (>= 2.21.0), testthat (>= 1.0.2)
biglm, betareg, data.table (>= 1.10.0), digest, gridExtra,
HSAUR3, knitr (>= 1.15.1), MASS, mgcv (>= 1.8-13), rmarkdown,
roxygen2, StanHeaders (>= 2.21.0), testthat (>= 1.0.2)
arm, gamm4, gridExtra, HSAUR3, KernSmooth, knitr, MASS,
rmarkdown, svglite, testthat
arm, gamm4, gridExtra, HSAUR3, KernSmooth, knitr, MASS,
rmarkdown, testthat
arm, gamm4, gridExtra, HSAUR3, KernSmooth, knitr, MASS,
rmarkdown, roxygen2, testthat
testthat, knitr, rmarkdown, ggplot2, ggjoy
rstan (>= 2.12.1), rstanarm (>= 2.12.1), shinystan (>=
2.2.1), loo (>= 0.1.6), testthat, covr, knitr, rmarkdown
bayesplot (>= 1.0.0), rstan (>= 2.13.2), rstanarm (>=
2.13.1), shinystan (>= 2.2.1), loo (>= 1.0.0), testthat, covr,
knitr, rmarkdown
bayesplot (>= 1.1.0), rstan (>= 2.14.1), rstanarm (>=
2.14.1), shinystan (>= 2.2.1), loo (>= 1.0.0), testthat, covr,
knitr, rmarkdown
bayesplot (>= 1.2.0), rstan (>= 2.16.0), rstanarm (>=
2.15.3), shinystan (>= 2.3.0), loo (>= 1.1.0), testthat, covr,
knitr, rmarkdown
bayesplot (>= 1.2.0), rstan (>= 2.17.2), rstanarm (>=
2.17.2), shinystan (>= 2.3.0), loo (>= 1.1.0), testthat, covr,
knitr, rmarkdown
bayesplot (>= 1.5.0), rstan (>= 2.17.2), rstanarm (>=
2.17.4), shinystan (>= 2.4.0), loo (>= 2.0.0), testthat, covr,
knitr, devtools, roxygen2 (>= 6.0.1), rmarkdown, rstudioapi,
usethis (>= 1.3.0)
rstan (>= 2.17.2), usethis (>= 1.5.1), testthat (>= 2.0.0),
knitr, pkgbuild, pkgload, roxygen2 (>= 6.0.1), rmarkdown,
rstudioapi
testthat, digest, knitr, rmarkdown, pkgdown, fields
knitr, rmarkdown, ggpubr, graphics, emmeans, coin, boot
knitr, rmarkdown, ggpubr, graphics, emmeans, coin, boot,
testthat, spelling
eha, testthat, ggplot2, lattice, readstata13, mstate
eha, testthat, ggplot2, lattice, readstata13, mstate, scales,
survPen
eha, testthat, ggplot2, lattice, readstata13, mstate, scales,
survPen, flexsurv, timereg
testthat, covr, knitr, mnormt, rmarkdown, mirt, truncnorm
ggplot2, plyr, scales, grid, testthat, knitr, rmarkdown
spelling, svglite, png, jpeg, webp, ggplot2
spelling, svglite, magick, png, webp, ggplot2
spelling, svglite, magick, webp, ggplot2, knitr, rmarkdown
spelling, svglite, magick, webp, ggplot2, knitr
ggplot2, knitr, magick, rmarkdown, spelling, svglite, webp
knitr, testthat, ggplot2, Rcpp, rgdal, rmarkdown
knitr, testthat, ggplot2, Rcpp, rgdal, rmarkdown, covr
askpass, knitr, rmarkdown, testthat, tibble
dplyr, tibble, tidyr, testthat, xml2, knitr, rmarkdown
dplyr, tibble, tidyr, testthat, xml2, knitr, rmarkdown,
flextable, officer
testthat, glba, knitr, rmarkdown, dplyr, tidyr, purrr,
lattice, latticeExtra, binom, RWiener
testthat, glba, knitr, rmarkdown, dplyr, tidyr, lattice,
latticeExtra, binom, RWiener
covr, testthat (>= 3.0.0), spelling, lifecycle
testit, bookdown, xtable, testthat (>= 3.0.0)
covr, bookdown, testit, testthat (>= 3.0.0), xtable
bookdown, covr, testit, testthat (>= 3.0.0), xtable
devtools, knitr, rmarkdown, sjmisc, sjPlot
jsonlite, xml2, data.table, testthat, knitr, rmarkdown, covr,
magrittr
jsonlite, xml2, testthat, knitr, rmarkdown, covr, magrittr
knitr, testthat, lubridate, ggplot2, scales, grid
roxygen2 (>= 6.0.1), knitr, testthat, lubridate, ggplot2,
scales, grid
knitr, rmarkdown, testthat (>= 3.0.0), rstudioapi, vcr (>=
0.6.0)
parallel, igraph, intamap, rgeos, spacetime, data.table,
reshape2
parallel, intamap, rgeos, spacetime, data.table, reshape2
parallel, intamap, rgeos, spacetime, data.table, rgdal,
reshape2
parallel, igraph, rgdal, intamap, rgeos, spacetime,
data.table, reshape2
testthat, knitr, rmarkdown, covr, leaflet, lintr, ggplot2,
showtext, sysfonts, trekfont
testthat, knitr, rmarkdown, covr, leaflet, lintr, showtext,
sysfonts, trekfont
testthat, knitr, rmarkdown, covr, leaflet, showtext,
sysfonts, trekfont, png
ggplot2, knitr, parallel, rmarkdown, testthat
ggplot2, knitr, magick, openssl, readr, rmarkdown, testthat,
webshot, covr
ggplot2, knitr, magick, openssl, readr, rmarkdown, testthat
(>= 2.1.0), webshot, covr, igraph
testthat, curl, dplyr, shiny(>= 1.0.0), miniUI(>= 0.1.1),
rstudioapi(>= 0.5)
testthat, knitr, rmarkdown, dtw, microbenchmark
testthat, knitr, rmarkdown, dtw, rbenchmark
xts, timeSeries, multicore, snowfall, nloptr
testthat, actuar (>= 2.3.0), knitr, rmarkdown
testthat, C50, Cubist, xrf (>= 0.2.0), covr, modeldata,
spelling
testthat, C50, Cubist, xrf (>= 0.2.0), covr, modeldata,
spelling, recipes, knitr, rmarkdown
C50, covr, Cubist, knitr, recipes, rmarkdown, spelling,
testthat, xrf (>= 0.2.0)
C50, covr, Cubist, knitr, modeldata, recipes, rmarkdown,
spelling, testthat (>= 3.0.0), xrf (>= 0.2.0)
knitr, rmarkdown, covr, pkgdown, testthat, NHSRdatasets
rjags (>= 4-7), modeest, testthat (>= 3.0.0), knitr,
markdown, spelling
dplyr, knitr, magrittr, rmarkdown, testthat
dplyr, knitr, magrittr, rmarkdown, spelling, testthat
covr, testthat, ggplot2, knitr, rmarkdown, sessioninfo,
rbenchmark, cowplot, spelling
knitr, rmarkdown, testthat, devtools, roxygen2, inline,
microbenchmark
knitr, rmarkdown, testthat, inline, microbenchmark
bang, knitr, microbenchmark, revdbayes, rmarkdown, testthat
bang, inline, knitr, microbenchmark, revdbayes, rmarkdown,
testthat
knitr, magrittr (>= 1.5), rmarkdown, testthat (>= 2.0.0)
testthat, knitr, png, stringi (>= 0.3.1)
testthat, knitr, png, stringi (>= 0.3.1), rmarkdown
testthat, knitr, png, stringi (>= 0.3.1), rmarkdown, covr
covr, knitr, png, rmarkdown, spelling, stringi (>= 0.3.1),
testthat
covr, glue, knitr, readr, rmarkdown, repurrrsive, spelling,
stringi (>= 0.3.1), testthat (>= 3.0.2), webfakes
covr, knitr, readr, repurrrsive, rmarkdown, spelling, stringi
(>= 0.3.1), testthat (>= 3.0.2), webfakes
rmarkdown, htmltools, testthat, covr, grid, knitr
covr, knitr, rmarkdown, purrr, testthat (>= 3.0.0)
knitr, rmarkdown, kableExtra, magrittr, prettydoc
knitr, testthat, covr, spelling, rmarkdown
spelling, rmarkdown, knitr, testthat, markdown, pander
fields, spam, maps, RColorBrewer, classInt, cshapes
fields, spam, maps, RColorBrewer, classInt, cshapes, ncdf
fields, spam, maps, RColorBrewer, classInt, cshapes, ncdf,
raster
RColorBrewer, classInt, cshapes, ncdf, raster
rgdal, rworldxtra, RColorBrewer, classInt, cshapes, ncdf,
raster
Matrix, DT, covr, crayon, curl, digest, dplyr (>= 0.8.0),
ggrepel, gridExtra, htmltools, knitr, learnr, microbenchmark,
nlme, remotes, rlang, rmarkdown, scales, shiny, stringi,
symengine, testthat, tidyr, usethis, vdiffr (>= 1.0), withr,
xgxr, pillar, tibble, units (>= 0.6-0), rsconnect, devtools,
patchwork, nlmixr2data, lifecycle
Matrix, DT, covr, crayon, curl, data.table (>= 1.12.4),
digest, dplyr (>= 0.8.0), ggrepel, gridExtra, htmltools, knitr,
learnr, microbenchmark, nlme, remotes, rlang, rmarkdown,
scales, shiny, stringi, symengine, testthat, tidyr, usethis,
vdiffr (>= 1.0), withr, xgxr, pillar, tibble, units (>= 0.6-0),
rsconnect, devtools, patchwork, nlmixr2data
Matrix, DT, covr, crayon, curl, data.table (>= 1.12.4),
digest, dplyr (>= 0.8.0), ggrepel, gridExtra, htmltools, knitr,
learnr, microbenchmark, nlme, remotes, rlang, rmarkdown,
scales, shiny, stringi, symengine, testthat, tidyr, usethis,
vdiffr (>= 1.0), withr, xgxr, pillar, tibble, units (>= 0.6-0),
rsconnect, devtools, patchwork, nlmixr2data, lifecycle
testthat (>= 3.0.0), units, tibble, data.table, dplyr,
pillar, nlmixr2data, qs
dplyr, ggthemes, knitr, rmarkdown, robotstxt, tidytext
dplyr, ggplot2, ggthemes, knitr, rmarkdown, robotstxt,
tidytext
knitr, rmarkdown, glmnet, Metrics, testthat
dplyr, ModelMetrics, testthat, covr, knitr, rmarkdown
testthat, covr, knitr, rmarkdown, methods
rmarkdown, knitr, ggplot2, spelling, testthat (>= 3.0.0)
SharpeR, shiny, testthat, ggplot2, xtable, formatR, knitr
simFrame, sp, maptools, rgeos, graphics, R.rsp
knitr, rmarkdown, ape, testthat (>= 2.1.0)
testthat (>= 3.0.0), knitr, rmarkdown, graphics
testthat, shinytest, safetyData, safetyGraphics, yaml
testthat, shinytest, knitr, ggplot2, plotly
knitr, markdown, prettydoc, rmarkdown, testthat (>= 3.0.0),
covr, learnr, spelling, lattice, spatstat.data, Matrix, mgcv,
PMCMR, PMCMRplus, devtools, extrafont, DescTools, GGally, VGAM,
car, dplyr, tibble, ggiraphExtra, scales, spatstat, vcd
knitr, markdown, prettydoc, rmarkdown, testthat (>= 3.0.0),
covr, learnr, spelling, lattice, spatstat.data, Matrix, mgcv,
PMCMRplus, devtools, extrafont, DescTools, GGally, VGAM, car,
dplyr, tibble, ggiraphExtra, scales, spatstat, vcd, FactoMineR,
cluster, caret, corrplot, actuar
grpreg, truncnorm, foreach, doParallel, testthat, covr,
vdiffr, knitr, rmarkdown
dplyr (>= 1.0.0), ggplot2, knitr, rmarkdown, sf, stats, tidyr
knitr, testthat, rmarkdown, here, RForcecom
knitr, testthat, spelling, rmarkdown, here, microbenchmark,
ggplot2, RForcecom
knitr, testthat, spelling, rmarkdown, here, microbenchmark,
ggplot2, sessioninfo, RForcecom
knitr, rmarkdown, testthat, spelling, here, microbenchmark,
ggplot2, sessioninfo
charlatan, testthat (>= 2.0.0), tibble, covr
knitr, rmarkdown, testthat, ggplot2, png, viridis, gifski,
gganimate
knitr, rmarkdown, DescTools, datasets, testthat
GO.db, GOstats, ROCR, ape, car, eigenmodel, ergm, fdrtool,
ggplot2, huge, kernlab, lattice, mixer, network,
networkDynamic, networkTomography, ngspatial, org.Sc.sgd.db,
sna, vioplot
GO.db, GOstats, ROCR, ape, blockmodels, car, eigenmodel,
ergm, fdrtool, ggplot2, huge, kernlab, lattice, network,
networkDynamic, networkTomography, ngspatial, org.Sc.sgd.db,
sna, vioplot
car, lmtest, strucchange, Ecdat, survival, MASS
car, lmtest, strucchange, AER, survival, MASS
car, lmtest, strucchange, AER, survival, MASS, scatterplot3d
AER, car, geepack, lattice, lmtest, MASS, multiwayvcov, pcse,
plm, pscl, scatterplot3d, stats4, strucchange, survival
AER, car, geepack, lattice, lmtest, MASS, multiwayvcov,
parallel, pcse, plm, pscl, scatterplot3d, stats4, strucchange,
survival
AER, car, geepack, lattice, lme4, lmtest, MASS, multiwayvcov,
parallel, pcse, plm, pscl, scatterplot3d, stats4, strucchange,
survival
knitr, rmarkdown, shiny, colourpicker, manipulateWidget, DT
knitr, rmarkdown, pander, R.rsp, testthat
covr, testthat (>= 2.1.0), knitr, microbenchmark, rmarkdown
covr, testthat (>= 2.1.0), knitr, lubridate, microbenchmark,
purrr, rmarkdown, scales, withr
bit64, covr, testthat (>= 2.1.0), knitr, lubridate, bench,
purrr, rmarkdown, scales, stringi, units, withr, hms, haven
bench, bit64, covr, haven, hms, knitr, lubridate, purrr,
rmarkdown, scales, stringi, testthat (>= 2.1.0), units, withr,
xts, zoo
datasets, graphics, stats, knitr, rmarkdown
testthat, knitr, rmarkdown, httr, base64enc
testthat (>= 3.0.0), knitr, rmarkdown, httr, base64enc,
tibble, covr
future, knitr, remotes, rmarkdown, testthat, tidyverse,
xtable
future, knitr, remotes, rmarkdown, testthat, xtable
KFAS, FKF, fGarch, fImport, forecast, testthat, covr
testthat, KFAS, FKF, FitARMA, fGarch, forecast
testthat, KFAS, FKF, FitARMA, fGarch, fImport, forecast
knitr, rmarkdown, dendextend, smacof, testthat, progress
knitr, rmarkdown, shiny, dendextend, smacof, testthat,
progress
testthat, roxygen2, knitr, covr, spelling
testthat, roxygen2, knitr, tidyverse, covr, spelling
testthat, knitr, rmarkdown, withr, shiny
testthat, knitr, rmarkdown, withr, shiny, curl
testthat, knitr, rmarkdown, tidylog, magrittr
testthat, knitr, rmarkdown, tidylog, magrittr, covr
devtools, knitr, rgdal, testthat, rmarkdown
testthat, spelling, knitr, rmarkdown, alluvial, igraph,
aricode, covr
testthat, spelling, knitr, rmarkdown, aricode, covr
ggplot2, knitr, rmarkdown, cli, testthat
ggplot2, knitr, rmarkdown, cli, testthat, covr
mvtnorm, psychotree, knitr, rmarkdown, testthat
biomaRt, covr, ggplot2, igraph, kableExtra, KEGGREST, knitr,
ontologyIndex, ontoProc, pkgdown, RColorBrewer, rmarkdown,
spelling, SingleCellSignalR, testthat (>= 3.0.0), visNetwork
methods, knitr, rmarkdown, testthat, coda.base, grid, ssvd,
simplifyEnrichment, WGCNA, cowplot, matrixStats, stringr, zoo,
rlang, AnnotationDbi, GO.db, conos, pagoda2, betareg
methods, knitr, rmarkdown, testthat, coda.base, grid, ssvd,
simplifyEnrichment, WGCNA, cowplot, matrixStats, stringr, zoo,
rlang, AnnotationDbi, GO.db, conos, pagoda2, betareg, slam, tm
IRanges, knitr, readr, rmarkdown, testthat (>= 3.0.0)
knitr, rmarkdown, testthat, stringr, tensorflow
dichromat, bit64, covr, hms, testthat (>= 2.0)
bit64, covr, dichromat, hms, testthat (>= 2.1.0), ggplot2
bit64, covr, dichromat, ggplot2, hms (>= 0.5.0), testthat (>=
2.1.0)
bit64, covr, dichromat, ggplot2, hms (>= 0.5.0), stringi,
testthat (>= 3.0.0), waldo (>= 0.4.0)
doParallel, foreach, ggplot2, knitr, MASS, pscl, purrr,
reshape2, rmarkdown, sp, testthat
doParallel, foreach, ggplot2, knitr, MASS, pscl, reshape2,
rmarkdown, sp, testthat
purrr, doParallel, foreach, ggplot2, knitr, MASS, pscl,
reshape2, rmarkdown, sp, testthat, gamlss.dist
gifski, knitr, leafem, leaflet, leafpop, mapview, raster,
spelling, rmarkdown, testthat (>= 3.0.0)
knitr, rmarkdown, prettydoc, maps, scales
ggrastr (>= 0.1.7), pbapply, rmumps, testthat
knitr, markdown, rmarkdown, ggplot2, plyr, boot, parallel,
shiny, testthat
knitr, markdown, rmarkdown, ggplot2, plyr, boot, parallel,
shiny, glue, rclipboard, testthat
knitr, markdown, rmarkdown, ggplot2, plyr, boot, parallel,
shiny, glue, janitor, rclipboard, testthat
knitr, markdown, rmarkdown, ggplot2, plyr, boot, parallel,
shiny, shinytest, glue, janitor, rclipboard, rvest, testthat
rmarkdown, knitr, DuoClustering2018, scater, splatter
knitr, prettydoc, roxygen2, testthat (>= 2.1.0)
knitr, rmarkdown, prettydoc, roxygen2, testthat (>= 2.1.0)
knitr, rmarkdown, prettydoc, roxygen2, testthat (>= 2.1.0),
spelling
dplyr, ggplot2, knitr, rmarkdown, stats, testthat (>= 2.1.0),
tidytext
covr, cowplot, here, hexSticker, knitr, purrr, rmarkdown,
showtext, testthat
covr, cowplot, ggplot2, ggtext, here, hexSticker, knitr,
purrr, rmarkdown, showtext, testthat
covr, cowplot, ggplot2, ggtext, here, hexSticker, hrbrthemes,
knitr, purrr, readr, rmarkdown, showtext, testthat
knitr, numDeriv, cobs, scam, microbenchmark
testthat, knitr, numDeriv, cobs, scam, rbenchmark
spelling, ggplot2, htmlTable, knitr, rmarkdown
knitr, rmarkdown, testthat (>= 2.0.0), cluster
gsl (>= 1.8-3), hypergeo(>= 1.0), knitr, rmarkdown
gsl (>= 1.8-3), hypergeo(>= 1.0), knitr, rmarkdown, testthat
gsl (>= 1.8-3), hypergeo(>= 1.0), knitr, rmarkdown, testthat,
crch
gsl (>= 1.8-3), hypergeo(>= 1.0), rmarkdown, testthat, crch
MASS, rpart, Rmixmod, mvtnorm, ggplot2, speedglm, knitr,
rmarkdown, plotly, pROC, shiny, testthat, covr
kableExtra, knitr, magrittr, rmarkdown, testthat, vdiffr
renv, testthat (>= 3.0.0), vdiffr, rmarkdown, knitr, qpdf
MASS, RSQLite (>= 0.4-15), oligoClasses (>= 1.1.9)
MASS, RSQLite (>= 0.4-15), oligoClasses (>= 1.1.9), DBI
ape, knitr, rmarkdown, testthat (>= 0.9.0)
testthat, knitr, rgbif, sp, rworldmap, maps
testthat, knitr, rmarkdown, rgbif, sf, mapview, rworldmap,
maps
testthat, rgbif, sf, s2, mapview, rworldmap, maps
covr, devtools, ellipsis, ggplot2, ggrepel, janitor, knitr,
rmarkdown, roxygen2, stats, testthat (>= 3.0.0), tidyr,
tidyselect
covr, httptest, knitr, rmarkdown, testthat (>= 3.0.0)
httr, rjson, grid, knitr, rmarkdown, multigraph
callr, covr (>= 3.5.0), devtools, here, knitr, rmarkdown,
skimr, spelling, testthat (>= 3.0.0)
covr (>= 3.5.0), devtools, here, knitr, rmarkdown, skimr,
spelling, testthat (>= 3.0.0)
knitr, lfe, rmarkdown, skimr, spelling, testthat (>= 3.0.0)
knitr, lfe, rmarkdown, skimr, spelling, testthat (>= 3.0.0),
tibble
cffr, knitr, lfe, rmarkdown, skimr, spelling, testthat (>=
3.0.0), tibble
testthat (>= 0.3), rmarkdown, webshot, digest
snow, snowfall, lpSolve, lpSolveAPI, Rsymphony
mlr (>= 2.16.0), PostcodesioR (>= 0.1.1), reclin, dplyr,
knitr, rmarkdown, testthat
rgdal (>= 0.8-12), knitr, shinyBS, shiny
rgdal (>= 0.8-12), knitr, shinyBS, shiny, dismo
rgdal (>= 0.9-1), knitr, shinyBS, shiny, dismo, rmarkdown
covr, grDevices, knitr, rmarkdown, stats, testthat, utils,
rgdal (>= 1.5-8), automap (>= 1.0-14), graphics, future.apply
biomod2, dismo, testthat, knitr, rmarkdown
ggplot2, reshape2, testthat, knitr, rmarkdown
ggplot2, reshape2, testthat, knitr, rmarkdown, httr
ggplot2, reshape2, testthat, knitr, rmarkdown, httr, httr2
knitr, rmarkdown, mgcv, dlnm, coda, testthat (>= 3.0.0)
seasonalview (>= 0.1.3), testthat (>= 3.0.0), covr, knitr,
rmarkdown, spelling
MASS, nlme, sp, maptools, gpclib, spsurvey, rgdal, rgeos
maptools, spsurvey, rgdal, rgeos, knitr, gdistance
maptools, spsurvey, rgdal, knitr, gdistance, rgeos
MASS, nlme, sp, maptools, gpclib, spsurvey, rgdal, rgeos,
splines
MASS, nlme, sp, maptools, gpclib, spsurvey, rgdal, rgeos,
raster
MASS, nlme, sp, maptools, spsurvey, rgdal, rgeos, raster,
parallel
nlme, sp, maptools, spsurvey, rgdal, rgeos, raster, parallel
maptools, spsurvey, rgdal, rgeos, raster
maptools, spsurvey, rgdal, knitr, gdistance, rgeos, readxl
maptools, spsurvey, rgdal, knitr, gdistance, rgeos, readxl,
rmarkdown
maptools, spsurvey, rgdal, knitr, gdistance, rgeos, readxl,
rmarkdown, testthat
maptools, rgdal, knitr, gdistance, rgeos, readxl, rmarkdown,
testthat
maptools, rgdal, knitr, gdistance, rgeos, readxl, rmarkdown,
testthat, terra
gdistance, knitr, readxl, rmarkdown, sp, testthat
gdistance, knitr, readxl, rmarkdown, sp, testthat, spsurvey
(>= 5.3.0)
gdistance, knitr, readxl, rmarkdown, sp, spsurvey (>= 5.3.0),
testthat
covr, mockery, testthat, knitr, rmarkdown, withr
diversitree, phytools, testthat, testit, knitr, rmarkdown
knitr, lintr, rmarkdown, testthat, tufte
knitr, lintr, rmarkdown, testthat, tufte, tcltk, igraph
bayestestR, covr, tidyr, rmarkdown, rstanarm, stringr,
testthat
covr, emmeans, ggrepel, MASS, rmarkdown, rstanarm, stringr,
testthat, tidyr
emmeans, ggraph, ggrepel, MASS, rmarkdown, rstanarm,
tidygraph, tidyr
emmeans, ggraph, ggrepel, grid, gridExtra, MASS, rmarkdown,
rstanarm, tidygraph, tidyr
brms, coda, correlation, emmeans, ggraph, ggrepel, glmmTMB,
grid, gridExtra, lavaan, logspline, lme4, MASS, mclust,
metafor, modelbased, NbClust, nFactors, performance, psych,
randomForest, rmarkdown, rstanarm, splines, tidygraph, tidyr
brms, coda, correlation, emmeans, qqplotr, ggraph, ggrepel,
glmmTMB, grid, gridExtra, httr, lavaan, logspline, lme4, MASS,
mclust, metafor, modelbased, NbClust, nFactors, performance,
psych, randomForest, rmarkdown, rstanarm, splines, tidygraph,
tidyr
brms, coda, correlation, emmeans, ggraph, ggrepel, glmmTMB,
grid, gridExtra, httr, lavaan, lme4, logspline, MASS, mclust,
metafor, modelbased, NbClust, nFactors, performance (>= 0.7.1),
psych, qqplotr, randomForest, rmarkdown, rstanarm, splines,
tidygraph, tidyr, spelling, testthat (>= 3.0.0), vdiffr
brms, coda, correlation, dplyr, emmeans, ggraph, ggrepel,
glmmTMB, grid, gridExtra, httr, lavaan, lme4, logspline, MASS,
mclust, metafor, modelbased, NbClust, nFactors, performance (>=
0.7.1), psych, qqplotr, randomForest, rmarkdown, rstanarm,
splines, tidygraph, tidyr, spelling, testthat (>= 3.0.0),
vdiffr
brms, coda, correlation, dplyr, emmeans, ggdist, ggraph,
ggrepel, ggside, glmmTMB, grid, httr, lavaan, lme4, logspline,
MASS, mclust, metafor, modelbased, NbClust, nFactors,
patchwork, performance (>= 0.7.1), psych, qqplotr,
randomForest, rmarkdown, rstanarm, spelling, splines, testthat
(>= 3.0.0), tidygraph, tidyr, vdiffr (>= 1.0.0)
brms, coda, correlation, emmeans, factoextra, ggdist, ggraph,
ggrepel, ggridges, ggside, glmmTMB, grid, httr, lavaan, lme4,
logspline, MASS, mclust, metafor, modelbased, NbClust,
nFactors, patchwork, performance (>= 0.8.0), poorman, psych,
qqplotr, randomForest, rmarkdown, rstanarm, spelling, splines,
testthat (>= 3.1.0), tidygraph, tidyr, vdiffr
brms, coda, correlation, emmeans, factoextra, ggdist, ggraph,
ggrepel, ggridges, ggside, glmmTMB, grid, httr, lavaan, lme4,
logspline, MASS, mclust, mgcv, metafor, modelbased, NbClust,
nFactors, patchwork, performance (>= 0.9.0), poorman, psych,
qqplotr, randomForest, rmarkdown, rstanarm, spelling, splines,
testthat (>= 3.1.0), tidygraph, vdiffr
brms, coda, correlation, emmeans, factoextra, ggdist, ggraph,
ggrepel, ggridges, ggside, glmmTMB, grid, httr, lavaan, lme4,
logspline, MASS, mclust, mgcv, metafor, modelbased, NbClust,
nFactors, patchwork, performance (>= 0.9.0), poorman, psych,
qqplotr, randomForest, rmarkdown, rstanarm, splines, testthat
(>= 3.1.0), tidygraph, vdiffr
brms, coda, correlation, emmeans, factoextra, ggdist, ggraph,
ggrepel, ggridges, ggside, glmmTMB, grid, httr, lavaan, lme4,
logspline, MASS, mclust, mgcv, metafor, modelbased, NbClust,
nFactors, patchwork, performance (>= 0.9.0), poorman, psych,
qqplotr, randomForest, rmarkdown, rstanarm, scales (>= 1.2.0),
splines, testthat (>= 3.1.0), tidygraph, vdiffr
brms, correlation (>= 0.8.2), emmeans, ggdist, ggraph,
ggrepel, ggridges, ggside, glmmTMB, grid, httr, lavaan, lme4,
logspline, MASS, mgcv, metafor, modelbased (>= 0.8.1),
nFactors, patchwork, performance (>= 0.9.2), poorman, psych,
qqplotr, randomForest, rmarkdown, rstanarm, scales (>= 1.2.0),
splines, testthat (>= 3.1.0), tidygraph, vdiffr
brms, curl, emmeans, factoextra, ggdist, ggraph, ggrepel,
ggridges, ggside, glmmTMB, grid, httr, lavaan, lme4, logspline,
MASS, mclust, mgcv, metafor, NbClust, nFactors, patchwork,
poorman, psych, qqplotr, randomForest, rmarkdown, rstanarm,
scales (>= 1.2.0), splines, testthat (>= 3.1.5), tidygraph,
vdiffr
Biobase, doParallel (>= 1.0.16), knitr, org.Mm.eg.db,
rmarkdown, testthat (>= 3.1.0)
testthat (>= 2.1.0), covr, repmis, knitr, rmarkdown, ggplot2,
tidyr, Mcomp, GGally
sound, rgl, rpanel, tcltk, signal, tuneR
rgl, rpanel, tcltk, signal, tuneR, audio
audio, fftw, ggplot2, rgl, rpanel, signal
audio, fftw, ggplot2, rgl, rpanel, phonTools, signal
knitr, rmarkdown, testthat, dygraphs (>= 1.1.1-1), xts (>=
0.9-7), leaflet (>= 1.0.1), sp (>= 1.2-3), adehabitatLT,
depmixS4, moveHMM (>= 1.2), htmltools, move, devtools
knitr, rmarkdown, testthat, dygraphs (>= 1.1.1-1), xts (>=
0.9-7), leaflet (>= 1.0.1), sp (>= 1.2-3), adehabitatLT,
depmixS4, moveHMM (>= 1.2), htmltools, move, devtools, spelling
flowMerge, flowClust, flowCore, knitr, rmarkdown
testthat, doParallel, knitr, rmarkdown, tidyr, tibble, dplyr,
lubridate, magrittr, rdwd
testthat, doParallel, knitr, rmarkdown, tidyr, tibble, dplyr,
lubridate, magrittr, rdwd, purrr
testthat, covr, knitr, rmarkdown, dplyr, ggplot2, tidycensus,
tigris
RSelenium, knitr, rmarkdown, testthat, data.table
knitr, rmarkdown, data.table, testthat, covr, RSauceLabs
ggplot2, knitr, markdown, piecewiseSEM, rmarkdown
parallel, Amelia, mice, foreign, OpenMx, GPArotation
MASS, parallel, Amelia, mice, foreign, OpenMx(>= 2.0.0),
GPArotation, mnormt, boot
MASS, parallel, Amelia, mice, foreign, OpenMx, GPArotation,
mnormt
MASS, parallel, Amelia, mice, foreign, OpenMx(>= 2.0.0),
GPArotation, mnormt
MASS, foreign, parallel, boot, Amelia, mice, GPArotation,
mnormt, OpenMx
MASS, foreign, parallel, boot, Amelia, mice, GPArotation,
mnormt, blavaan
MASS, foreign, parallel, boot, Amelia, mice, GPArotation,
mnormt, blavaan, emmeans, testthat
Amelia, blavaan, emmeans, foreign, MASS, mice, GPArotation,
mnormt, parallel, testthat
testthat, lintr, shinydashboard, covr, knitr, rmarkdown
knitr, testthat, rmarkdown, DiagrammeR (>= 1.0.6),
DiagrammeRsvg (>= 0.1), rsvg (>= 2.1), webp, semPlot, vdiffr
knitr, testthat, rmarkdown, DiagrammeR (>= 1.0.6),
DiagrammeRsvg (>= 0.1), webp, vdiffr
knitr, testthat, rmarkdown, DiagrammeR (>= 1.0.6),
DiagrammeRsvg (>= 0.1), webp
testthat (>= 2.1.0), knitr, rmarkdown, magrittr
semPlot, testthat (>= 2.1.0), knitr, rmarkdown, magrittr
knitr, rmarkdown, viridis, MASS, psychTools, testthat
spelling, geojsonlint, httptest, knitr, rmarkdown, testthat
(>= 2.1.0)
rgdal, spelling, geojsonlint, httptest, knitr, rmarkdown,
sys, tools, units, testthat (>= 2.1.0)
spelling, geojsonlint, httptest, knitr, rmarkdown, sys,
tools, units, testthat (>= 2.1.0)
leaflet, leafpm, mapedit, shiny, shinyFiles, shinydashboard,
shinyjs, shinyWidgets, spelling, geojsonlint, httptest, knitr,
rmarkdown, sys, tools, units, testthat (>= 2.1.0)
leaflet, leafpm, mapedit, shiny, shinyFiles, shinydashboard,
shinyjs, shinyWidgets, spelling, geojsonlint, httptest, knitr,
markdown, rmarkdown, sys, tools, units, testthat (>= 2.1.0)
leaflet, leafpm, mapedit, s2, shiny, shinyFiles,
shinydashboard, shinyjs, shinyWidgets, spelling, geojsonlint,
httptest, knitr, markdown, rmarkdown, sys, tools, units,
testthat (>= 2.1.0)
knitr, rmarkdown, logr, shinycssloaders, testthat
testthat, covr, knitr, rmarkdown, png, stargazer
rgl, evd, numbers, DiceKriging, ks, igraph, fanovaGraph
DiceDesign, randtoolbox, DiceKriging, fanovaGraph, rgl, evd,
numbers, ks, igraph, ggplot2, reshape2
DiceDesign, randtoolbox, DiceKriging, fanovaGraph, rgl, evd,
numbers, ks, igraph, ggplot2, reshape2, pracma
condMVNorm, DiceDesign, DiceKriging, evd, fanovaGraph,
ggplot2, gtools, igraph, ks, mc2d, mvtnorm, numbers, parallel,
pracma, randtoolbox, reshape2, rgl
condMVNorm, DiceDesign, DiceKriging, evd, fanovaGraph,
ggplot2, ggExtra, gtools, igraph, ks, mc2d, mvtnorm, numbers,
parallel, pracma, randtoolbox, reshape2, rgl
condMVNorm, DiceDesign, DiceKriging, evd, fanovaGraph,
ggplot2, ggExtra, gtools, igraph, ks, mc2d, mvtnorm, numbers,
parallel, pracma, randtoolbox, reshape2, rgl, triangle
condMVNorm, DiceDesign, DiceKriging, evd, ggplot2, ggExtra,
gtools, igraph, ks, mc2d, mvtnorm, numbers, parallel, pracma,
randtoolbox, reshape2, rgl, triangle
condMVNorm, DiceDesign, DiceKriging, evd, ggExtra, gtools,
igraph, ks, mc2d, mvtnorm, numbers, parallel, pracma,
randtoolbox, reshape2, rgl, triangle
condMVNorm, DiceDesign, DiceKriging, evd, ggExtra, gtools,
igraph, ks, MASS, mc2d, mvtnorm, parallel, pracma, randtoolbox,
reshape2, rgl, triangle
condMVNorm, DiceDesign, DiceKriging, evd, ggExtra, gtools,
igraph, ks, MASS, mc2d, mvtnorm, parallel, pracma, randtoolbox,
RANN, reshape2, rgl, triangle, TSP, whitening
condMVNorm, DiceDesign, DiceKriging, evd, ggExtra, gplots,
gtools, igraph, ks, MASS, mc2d, mvtnorm, parallel, pracma,
randtoolbox, RANN, reshape2, rgl, triangle, TSP, whitening
condMVNorm, DiceDesign, DiceKriging, doParallel, evd,
ggExtra, gplots, gtools, igraph, ks, MASS, mc2d, mvtnorm,
parallel, pracma, randtoolbox, RANN, reshape2, rgl, triangle,
TSP, whitening
condMVNorm, DiceDesign, DiceKriging, doParallel, evd,
ggExtra, grid, gplots, gtools, igraph, ks, lattice, MASS, mc2d,
mvtnorm, parallel, plotrix, pracma, randtoolbox, RANN,
reshape2, rgl, triangle, TSP, viridisLite, whitening
condMVNorm, DiceDesign, DiceKriging, doParallel, evd,
ggExtra, grid, gplots, gtools, igraph, IncDTW, ks, lattice,
MASS, mc2d, mvtnorm, parallel, plotrix, pracma, proxy,
randtoolbox, RANN, reshape2, rgl, stringr, triangle, TSP,
viridisLite, whitening
rgl, evd, numbers, DiceKriging, fanovaGraph
rgl, evd, numbers, DiceKriging, ks, fanovaGraph
rmarkdown, knitr, magrittr, microbenchmark, prettydoc,
rappdirs, rstudioapi, text2vec (>= 0.6)
covr, doParallel, e1071, parallel, randomForest, testthat
covr, doParallel, e1071, parallel, randomForest, testthat,
tm, NLP, shiny
covr, doParallel, e1071, NLP, parallel, randomForest,
testthat, tm
covr, doParallel, e1071, lexicon, MCS, NLP, parallel,
randomForest, stopwords, testthat, tm
ggplot2, ggridges, plotly, RColorBrewer, xts, zoo, testthat,
covr, textcat, stringr, sentometrics, spacyr, knitr, rmarkdown
ggplot2, ggridges, plotly, RColorBrewer, xts, zoo, future,
future.apply, progressr, progress, testthat, covr, stm, lda,
topicmodels, seededlda, LDAvis, servr, textcat, stringr,
sentometrics, spacyr, knitr, rmarkdown, webshot
covr, httptest, mockery, testthat (>= 2.1.0)
covr, knitr, testthat (>= 3.0.0), vdiffr (>= 1.0.0)
glue, knitr, rmarkdown, testthat, DBI, RSQLite
knitr, rmarkdown, testthat, DBI, RSQLite
covr, ggplot2, knitr, microbenchmark, pryr, rmarkdown,
spelling, testthat
covr, testthat, SummarizedExperiment, DESeq2, knitr,
rmarkdown, airway, limma, qvalue, edgeR, optmatch
covr, testthat (>= 2.1.0), SummarizedExperiment, DESeq2,
knitr, rmarkdown, airway, limma, qvalue, edgeR, optmatch
covr, testthat (>= 2.1.0), SummarizedExperiment, DESeq2,
knitr, rmarkdown, airway, limma, qvalue, edgeR
knitr, rmarkdown, FactoMineR, GDAtools, RColorBrewer,
TraMineRextras, WeightedCluster, ade4, cluster, questionr,
rmdformats, dplyr, purrr, ggplot2
downloader, knitr, GenomicAlignments, GenomicRanges, IRanges,
muscle, Rsamtools, prettydoc
downloader, knitr, rmarkdown, GenomicAlignments,
GenomicRanges, IRanges, muscle, Rsamtools, prettydoc
xlsx, knitr, rmarkdown, bookdown, kinship2, lattice, R.rsp
DT (>= 0.5), stevedore, tinytest, covr (>= 3.0.0), DBItest
DendSer, GA, testthat, dendextend, ggplot2, scales
DendSer, GA, Rtsne, dbscan, umap, testthat, dendextend,
ggplot2, scales
hyperSpec, testthat, coda, knitr, rmarkdown
tools, later, rstudioapi, knitr (>= 1.9), rmarkdown
callr, covr, mockery, reticulate, rmarkdown, testthat, withr
sp, rgeos, rgdal, RPostgreSQL, testthat, knitr, roxygen2
sp, rgeos, rgdal, RPostgreSQL, testthat, knitr, tibble,
dplyr, tidyr
sp (>= 1.2-4), rgeos, rgdal, RPostgreSQL, testthat, knitr,
tibble, dplyr, tidyr, geosphere (>= 1.5-5), maptools, maps
sp (>= 1.2-4), rgeos, rgdal, RPostgreSQL, testthat, knitr,
tibble, dplyr, tidyr, geosphere (>= 1.5-5), maptools, maps,
microbenchmark
sp (>= 1.2-4), rgeos, rgdal, dplyr, tibble, RSQLite,
RPostgreSQL, testthat, knitr, tidyr, geosphere (>= 1.5-5),
maptools, maps, microbenchmark
sp (>= 1.2-4), rgeos, rgdal, dplyr, lazyeval, tibble, rlang,
RSQLite, RPostgreSQL, testthat, knitr, tidyr, geosphere (>=
1.5-5), maptools, maps, microbenchmark
sp (>= 1.2-4), rgeos, rgdal, lazyeval, tibble, rlang, dplyr,
dbplyr, RSQLite, RPostgreSQL, testthat, knitr, tidyr, geosphere
(>= 1.5-5), maptools, maps, microbenchmark
sp (>= 1.2-4), rgeos, rgdal, lazyeval, tibble, rlang, dplyr,
RSQLite, RPostgreSQL, testthat, knitr, tidyr, geosphere (>=
1.5-5), maptools, maps, microbenchmark
sp (>= 1.2-4), rgeos, rgdal, lazyeval, tibble, rlang, dplyr,
ggplot2, RSQLite, RPostgreSQL, testthat, knitr, tidyr,
geosphere (>= 1.5-5), maptools, maps, microbenchmark
geosphere (>= 1.5-5), maptools, maps, rgdal, rgeos, sp (>=
1.2-4), RSQLite, RPostgreSQL, lazyeval, tibble, rlang, ggplot2,
dplyr (>= 0.7-0), tidyr (>= 0.7-0), testthat, knitr,
microbenchmark
geosphere (>= 1.5-5), maptools, maps, rgdal, rgeos, sp (>=
1.2-4), raster, RSQLite, RPostgreSQL, tibble, rlang, dplyr (>=
0.7-0), tidyr (>= 0.7-0), ggplot2, mapview, tmap, testthat,
knitr, covr, microbenchmark, spatstat
lwgeom (>= 0.1-2), maps, rgdal, rgeos, sp (>= 1.2-4), raster,
spatstat, tmap, maptools, RSQLite, RPostgreSQL, tibble (>=
1.4.1), rlang, dplyr (>= 0.7-0), tidyr (>= 0.7-2), tidyselect,
ggplot2, mapview, testthat, knitr, covr, microbenchmark,
rmarkdown
lwgeom (>= 0.1-2), maps, rgdal, rgeos, sp (>= 1.2-4), raster,
spatstat, tmap, maptools, RSQLite, RPostgreSQL, tibble (>=
1.4.1), pillar, rlang, dplyr (>= 0.7-0), tidyr (>= 0.7-2),
tidyselect, ggplot2, mapview, testthat, knitr, covr,
microbenchmark, rmarkdown
lwgeom (>= 0.1-2), maps, rgdal, rgeos, sp (>= 1.2-4), raster,
spatstat, tmap, maptools, RSQLite, tibble (>= 1.4.1), pillar,
rlang, dplyr (>= 0.7-0), tidyr (>= 0.7-2), RPostgres (>=
1.1.0), tidyselect, ggplot2, mapview, testthat, knitr, covr,
microbenchmark, rmarkdown
lwgeom (>= 0.1-2), maps, rgdal, rgeos, sp (>= 1.2-4), raster,
spatstat, tmap, maptools, RSQLite, tibble (>= 1.4.1), pillar,
rlang, dplyr (>= 0.7-0), tidyr (>= 0.7-2), RPostgreSQL,
RPostgres (>= 1.1.0), odbc, tidyselect, ggplot2, mapview,
testthat, knitr, covr, microbenchmark, rmarkdown
covr, dplyr (>= 0.7-0), ggplot2, knitr, lwgeom (>= 0.1-2),
maps, maptools, mapview, microbenchmark, odbc, pillar, pool,
raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>= 1.1.0),
RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat, stars, testthat,
tibble (>= 1.4.1), tidyr (>= 0.7-2), tidyselect, tmap
covr, dplyr (>= 0.7-0), ggplot2, knitr, lwgeom (>= 0.1-2),
maps, maptools, mapview, microbenchmark, odbc, pillar, pool,
raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>= 1.1.0),
RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat, stars, testthat,
tibble (>= 1.4.1), tidyr (>= 0.7-2), tidyselect, tmap (>= 2.0)
blob, covr, dplyr (>= 0.7-0), ggplot2, knitr, lwgeom (>=
0.1-5), maps, maptools, mapview, microbenchmark, odbc, pillar,
pool, raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>=
1.1.0), RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat, stars
(>= 0.2-0), testthat, tibble (>= 1.4.1), tidyr (>= 0.7-2),
tidyselect, tmap (>= 2.0)
blob, covr, dplyr (>= 0.8-0), ggplot2, knitr, lwgeom (>=
0.1-5), maps, maptools, mapview, microbenchmark, odbc, pillar,
pool, raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>=
1.1.0), RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat, stars
(>= 0.2-0), testthat, tibble (>= 1.4.1), tidyr (>= 0.7-2),
tidyselect, tmap (>= 2.0)
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.1-5), maps, maptools, mapview, microbenchmark, odbc, pillar,
pool, raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>=
1.1.0), RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat, stars
(>= 0.2-0), testthat, tibble (>= 1.4.1), tidyr (>= 0.7-2),
tidyselect, tmap (>= 2.0)
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.1-5), maps, maptools, mapview, microbenchmark, odbc, pillar,
pool, raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>=
1.1.0), RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat, stars
(>= 0.2-0), testthat, tibble (>= 1.4.1), tidyr (>= 1.0-0), tmap
(>= 2.0), vctrs
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.1-5), maps, mapview, microbenchmark, odbc, pillar, pool,
raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>= 1.1.0),
RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat, spatstat.utils,
stars (>= 0.2-0), testthat, tibble (>= 1.4.1), tidyr (>=
1.0-0), tmap (>= 2.0), vctrs
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.2-1), maps, mapview, microbenchmark, odbc, pillar, pool,
raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>= 1.1.0),
RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat, spatstat.utils,
stars (>= 0.2-0), testthat, tibble (>= 1.4.1), tidyr (>=
1.0-0), tmap (>= 2.0), vctrs
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.2-1), maps, mapview, microbenchmark, odbc, pillar, pool,
raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>= 1.1.0),
RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat, spatstat.utils,
stars (>= 0.2-0), testthat, tibble (>= 1.4.1), tidyr (>=
1.0-0), tidyselect (>= 1.0.0), tmap (>= 2.0), vctrs
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.2-1), maps, mapview, microbenchmark, odbc, pillar, pool,
raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>= 1.1.0),
RPostgreSQL, RSQLite, s2 (>= 1.0.0), sp (>= 1.2-4), spatstat,
spatstat.utils, stars (>= 0.2-0), testthat, tibble (>= 1.4.1),
tidyr (>= 1.0-0), tidyselect (>= 1.0.0), tmap (>= 2.0), vctrs
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.2-1), maps, mapview, microbenchmark, odbc, pillar, pool,
raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>= 1.1.0),
RPostgreSQL, RSQLite, s2 (>= 1.0.1), sp (>= 1.2-4), spatstat,
spatstat.utils, stars (>= 0.2-0), testthat, tibble (>= 1.4.1),
tidyr (>= 1.0-0), tidyselect (>= 1.0.0), tmap (>= 2.0), vctrs
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.2-1), maps, mapview, microbenchmark, odbc, pillar, pool,
raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>= 1.1.0),
RPostgreSQL, RSQLite, s2 (>= 1.0.1), sp (>= 1.2-4), spatstat
(>= 2.0-1), spatstat.geom, spatstat.core, spatstat.linnet,
spatstat.utils, stars (>= 0.2-0), terra, testthat, tibble (>=
1.4.1), tidyr (>= 1.0-0), tidyselect (>= 1.0.0), tmap (>= 2.0),
vctrs
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.2-1), maps, mapview, microbenchmark, odbc, pillar, pool,
raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>= 1.1.0),
RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat (>= 2.0-1),
spatstat.geom, spatstat.core, spatstat.linnet, spatstat.utils,
stars (>= 0.2-0), terra, testthat, tibble (>= 1.4.1), tidyr (>=
1.0-0), tidyselect (>= 1.0.0), tmap (>= 2.0), vctrs, wk
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.2-1), maps, mapview, Matrix, microbenchmark, odbc, pillar,
pool, raster, rgdal, rgeos, rlang, rmarkdown, RPostgres (>=
1.1.0), RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat (>=
2.0-1), spatstat.geom, spatstat.core, spatstat.linnet,
spatstat.utils, stars (>= 0.2-0), terra, testthat, tibble (>=
1.4.1), tidyr (>= 1.0-0), tidyselect (>= 1.0.0), tmap (>= 2.0),
vctrs, wk
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.2-1), maps, mapview, Matrix, microbenchmark, odbc, pillar,
pool, raster, rlang, rmarkdown, RPostgres (>= 1.1.0),
RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat (>= 2.0-1),
spatstat.geom, spatstat.random, spatstat.linnet,
spatstat.utils, stars (>= 0.2-0), terra, testthat, tibble (>=
1.4.1), tidyr (>= 1.2.0), tidyselect (>= 1.0.0), tmap (>= 2.0),
vctrs, wk
blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>=
0.2-1), maps, mapview, Matrix, microbenchmark, odbc, pbapply,
pillar, pool, raster, rlang, rmarkdown, RPostgres (>= 1.1.0),
RPostgreSQL, RSQLite, sp (>= 1.2-4), spatstat (>= 2.0-1),
spatstat.geom, spatstat.random, spatstat.linnet,
spatstat.utils, stars (>= 0.2-0), terra, testthat, tibble (>=
1.4.1), tidyr (>= 1.2.0), tidyselect (>= 1.0.0), tmap (>= 2.0),
vctrs, wk
ggraph, ggplot2, grDevices, knitr, pkgdown, rmarkdown,
RColorBrewer, testthat (>= 2.3.2), tidygraph, tidyverse,
networkD3
testthat, covr, knitr, maps, rmarkdown, viridisLite
broom, dbscan, dplyr, ggplot2, knitr, patchwork, purrr,
rmarkdown, sfnetworks, stringr, testthat (>= 3.0.0), tibble,
tidyr, vctrs, yaml
broom, dbscan, dplyr, ggplot2, knitr, magrittr, patchwork,
purrr, pracma, rmarkdown, sfnetworks, stringr, testthat (>=
3.0.0), tibble, tidyr, vctrs, yaml, zoo, Kendall, readr
testthat (>= 3.0.0), lubridate, covr, knitr, rmarkdown
dbscan, fansi, ggplot2 (>= 3.0.0), knitr, rmarkdown,
spatstat, testthat, tidyverse, TSP
spatstat.geom, dbscan, fansi, ggplot2 (>= 3.0.0), knitr,
rmarkdown, spatstat (>= 2.0.0), testthat, tidyverse, TSP,
spatstat.linnet
dbscan, fansi, ggplot2 (>= 3.0.0), knitr, rmarkdown, s2 (>=
1.0.1), spatstat.geom, spatstat.linnet, spatstat (>= 2.0.0),
testthat, tidyverse, TSP
dbscan, fansi, ggplot2 (>= 3.0.0), knitr, rmarkdown,
spatstat.geom, spatstat.linnet, spatstat (>= 2.0.0), testthat,
tidyverse, TSP, s2 (>= 1.0.1)
datasets, tcltk, cluster, MASS, Matrix, nlme, lokern
datasets, tcltk, cluster, lattice, MASS, Matrix, nlme, lokern
datasets, tcltk, cluster, lattice, MASS, Matrix, nlme,
lokern, Rmpfr, gmp
knitr, spacetime, rmarkdown, dplyr (>= 0.8-3), trajectories
(>= 0.2.2), stars, ncmeta, tidyr, ggplot2, magrittr, sp, rlang
testthat (>= 2.1.0), utils, ggplot2, adehabitatLT, knitr,
geosphere, scales, covr, rmarkdown, lwgeom
bigmemory, glmnet, gridExtra, R.rsp, testthat
testthat, MASS, knitr, ggplot2, rmarkdown
knitr, rmarkdown, Rfast, testthat (>= 3.0.0), doParallel,
doSNOW, snow, foreach, entropy, roxygen2, covr
knitr, rmarkdown, Rfast, testthat (>= 3.0.0), doParallel,
doSNOW, snow, foreach, entropy, roxygen2, covr, RANN
knitr, rmarkdown, bookdown, maptools (>= 0.8), testthat
knitr, rmarkdown, bookdown, maptools (>= 0.8), testthat, plyr
(>= 1.8.4), reshape2(>= 1.4.2)
knitr, rmarkdown, bookdown, maptools (>= 0.8), testthat, plyr
(>= 1.8.4), reshape2 (>= 1.4.2), threejs, rgdal
knitr, rmarkdown, bookdown, maptools (>= 0.8), testthat,
reshape2 (>= 1.4.2), threejs, rgdal
R.rsp, maptools (>= 0.8), testthat, reshape2 (>= 1.4.2),
threejs, rgdal
R.rsp, maptools (>= 0.8), testthat, reshape2 (>= 1.4.2),
threejs, rgdal, stars
covr, DALEX, knitr, randomForest, rpart, testthat, titanic
covr, DALEX, knitr, randomForest, rpart, testthat, titanic,
qpdf
covr, DALEX, knitr, randomForest, rpart, testthat, qpdf
covr, knitr, randomForest, rpart, testthat, markdown, qpdf
ranger, xgboost, mgcv, testthat, knitr, rmarkdown, roxygen2,
MASS, ggplot2, gbm
ranger, xgboost, mgcv, testthat, knitr, rmarkdown, roxygen2,
MASS, ggplot2, caret, gbm, party, partykit
covr, dplyr, testthat (>= 2.1.0), knitr, rmarkdown
covr, dplyr, testthat (>= 2.1.0), knitr, rmarkdown, spatstat
covr, dplyr, future, future.apply, knitr, rmarkdown, testthat
(>= 2.1.0)
covr, dplyr, future, future.apply, knitr, rmarkdown, spatstat
(>= 2.0.0), testthat (>= 2.1.0)
covr, dplyr, getCRUCLdata, ggplot2, future, future.apply,
knitr, patchwork, rgbif, rgdal, rmarkdown, rnaturalearth,
rnaturalearthdata, sf, spatstat (>= 2.0.0), testthat (>= 2.1.0)
covr, dplyr, knitr, rmarkdown, spatstat (>= 2.0.0), testthat
(>= 2.1.0)
covr, dplyr, knitr, rmarkdown, spatstat (>= 2.0-0), testthat
(>= 3.0.0)
cluster, corpcor, dbscan, elasticnet, gglasso, mixOmics,
nnet, plotrix, RCy3, rmarkdown, sgPLS, survival (>= 3.2.13),
testthat (>= 3.0.0), visNetwork
MASS, rgdal, spdep, circlize, rvest, xml2, rgeos, raster
MASS, rgdal, spdep, circlize, rvest, xml2, rgeos, terra,
raster, exactextractr, httr, jsonlite, igraph, dendextend,
testthat, hydromad (>= 0.9.27), latticeExtra, farver, venn,
gower, daymetr, elevatr, Evapotranspiration, zoo, SoilTaxonomy
MASS, rgdal, spdep, circlize, rvest, xml2, rgeos, raster,
httr, jsonlite, dendextend, testthat, hydromad
MASS, rgdal, spdep, circlize, rvest, xml2, rgeos, raster,
httr, jsonlite, dendextend, testthat, hydromad, latticeExtra
MASS, rgdal, spdep, circlize, rvest, xml2, rgeos, raster,
httr, jsonlite, dendextend, testthat, hydromad, latticeExtra,
farver
MASS, rgdal, spdep, circlize, rvest, xml2, rgeos, raster,
httr, jsonlite, dendextend, testthat, hydromad, latticeExtra,
farver, venn, gower, daymetr, elevatr, Evapotranspiration, zoo
MASS, rgdal, spdep, circlize, rvest, xml2, rgeos, raster,
httr, jsonlite, dendextend, testthat, hydromad (>= 0.9.27),
latticeExtra, farver, venn, gower, daymetr, elevatr,
Evapotranspiration, zoo
htmltools (>= 0.5.2), logger (>= 0.2.1), rstudioapi (>=
0.13), ggplot2, ggExtra
datasets, Cairo (>= 1.5-5), testthat, knitr (>= 1.6),
markdown
datasets, Cairo (>= 1.5-5), testthat, knitr (>= 1.6),
markdown, ggplot2
datasets, Cairo (>= 1.5-5), testthat, knitr (>= 1.6),
markdown, rmarkdown, ggplot2
datasets, markdown, Cairo (>= 1.5-5), testthat
datasets, Cairo (>= 1.5-5), testthat, knitr (>= 1.6),
markdown, rmarkdown, ggplot2, magrittr
datasets, Cairo (>= 1.5-5), testthat, knitr (>= 1.6),
markdown, rmarkdown, ggplot2, reactlog (>= 1.0.0), magrittr
datasets, Cairo (>= 1.5-5), testthat (>= 2.1.1), knitr (>=
1.6), markdown, rmarkdown, ggplot2, reactlog (>= 1.0.0),
magrittr, yaml
datasets, Cairo (>= 1.5-5), testthat (>= 2.1.1), knitr (>=
1.6), markdown, rmarkdown, ggplot2, reactlog (>= 1.0.0),
magrittr, shinytest, yaml, future, dygraphs, ragg, showtext
datasets, Cairo (>= 1.5-5), testthat (>= 2.1.1), knitr (>=
1.6), markdown, rmarkdown, ggplot2, reactlog (>= 1.0.0),
magrittr, shinytest (>= 1.4.0.9003), yaml, future, dygraphs,
ragg, showtext, sass
datasets, Cairo (>= 1.5-5), testthat (>= 3.0.0), knitr (>=
1.6), markdown, rmarkdown, ggplot2, reactlog (>= 1.0.0),
magrittr, shinytest (>= 1.4.0.9003), yaml, future, dygraphs,
ragg, showtext, sass
datasets, Cairo (>= 1.5-5), testthat (>= 3.0.0), knitr (>=
1.6), markdown, rmarkdown, ggplot2, reactlog (>= 1.0.0),
magrittr, yaml, future, dygraphs, ragg, showtext, sass
knitr, googleLanguageR, rmarkdown, testthat, covr
knitr, leaflet, lintr, mockery (>= 0.4.2), rmarkdown, styler,
testthat
shinydashboard, googledrive, gmailr, emayili, knitr,
rmarkdown
covr, DBI, DT, devtools, emayili, gmailr, googledrive,
googlesheets4, knitr, rmarkdown, RSQLite, testthat (>= 3.0.0)
covr, DBI, DT, devtools, emayili, gmailr, googledrive,
googlesheets4, jsonlite, knitr, mongolite, rmarkdown, RSQLite,
shinytest2, testthat (>= 3.0.0)
dplyr, tibble, knitr, testthat, lintr, DT, covr
dplyr, tibble, knitr, testthat, lintr, DT, covr, leaflet,
plotly
dplyr, tibble, knitr, testthat, lintr, DT, covr, leaflet,
plotly, rmarkdown, markdown
pkgload, packer, sass, knitr, rmarkdown, testthat (>= 3.0.0)
shinydashboard, shinydashboardPlus, bs4Dash, rmarkdown, knitr
spelling, DiagrammeR, testthat, knitr, rmarkdown
knitr, rmarkdown, plotly, stats, testthat (>= 2.1.0), V8,
cli, rstudioapi, shinyWidgets, echarts4r
knitr, rmarkdown, stats, cli, testthat (>= 2.1.0),
rstudioapi, shinyWidgets, apexcharter, ggplot2, dplyr
shinythemes, tools, styler, formatR, uchardet, shinyjqui
shinythemes, tools, styler, formatR, uchardet, shinyjqui,
xml2
knitr, rmarkdown, lattice, testthat, survival, shiny, splines
knitr, rmarkdown, lattice, testthat, survival, shiny,
splines, ggplot2, DT, shinythemes,ggthemes, Epi
attempt, conflicted, DT, glue, htmltools, processx, testthat
(>= 3.0.0), thinkr
shinydashboard, formatR, viridisLite, RColorBrewer, testthat,
covr
shinydashboard, viridisLite, RColorBrewer, testthat, covr,
shinydashboardPlus
shinydashboard, viridisLite, RColorBrewer, testthat, covr,
shinydashboardPlus, bs4Dash, argonR, argonDash
shinydashboard, viridisLite, RColorBrewer, testthat, covr,
shinydashboardPlus, bs4Dash, argonR, argonDash, tablerDash
shinydashboard, testthat, covr, shinydashboardPlus, bs4Dash,
argonR, argonDash, tablerDash, ggplot2, DT
shinydashboard, testthat, covr, shinydashboardPlus, bs4Dash,
argonR, argonDash, tablerDash, ggplot2, DT, scales
shinydashboard, testthat, covr, shinydashboardPlus (>=
2.0.0), bs4Dash, argonR, argonDash, tablerDash, ggplot2, DT,
scales
DBI, RSQLite, lubridate, shinydashboard, testthat (>= 3.0.0),
shinytest, knitr, rmarkdown, covr
shinystan (>= 2.4.0), callr (>= 3.4.0), rstanarm, lasso2
shinystan (>= 2.4.0), callr (>= 3.4.0), rstanarm, MASS, lme4
shinystan (>= 2.4.0), callr (>= 3.4.0), rstanarm, MASS, lme4,
testthat, shinytest
ggplot2, shinystan (>= 2.4.0), callr (>= 3.4.0), rstanarm,
MASS, lme4, testthat, shinytest
cmdstanr, ggplot2, shinystan (>= 2.4.0), callr (>= 3.4.0),
rstanarm, MASS, lme4, testthat, shinytest
styler (>= 1.0.2), shinyAce, shinyWidgets, shinyjqui, knitr,
rmarkdown
styler (>= 1.0.2), shinyAce, shinyWidgets, shinyEffects,
shinyjqui, knitr, rmarkdown
styler (>= 1.2.0), shinyAce, shinyWidgets, shinyEffects,
shinyjqui, knitr, rmarkdown
styler (>= 1.2.0), shinyAce, shinyWidgets, shinyEffects,
shinyjqui, knitr, rmarkdown, jsonlite
ggplot2, highcharter, knitr, markdown, rmarkdown, plotly
knitr (>= 1.7), rmarkdown, rstudioapi (>= 0.5), shinyAce,
testthat (>= 0.9.1), V8 (>= 0.6)
knitr (>= 1.7), rmarkdown, shinyAce, testthat (>= 0.9.1), V8
(>= 0.6)
knitr (>= 1.7), rmarkdown, shinyAce, shinydisconnect,
testthat (>= 0.9.1)
htmltools (>= 0.2.9), knitr (>= 1.7), rmarkdown, shinyAce,
shinydisconnect, testthat (>= 0.9.1)
getPass, glue, gtable, htmltools, lubridate, progress,
rmarkdown, testthat, spelling
testthat, knitr, rmarkdown, covr, DBI, RSQLite, googledrive
keyring, testthat (>= 2.1.0), knitr, rmarkdown
knitr, stringr, rmarkdown, testthat (>= 3.0), shinyAce,
clipr, dplyr, ggplot2, cranlogs, xfun, magrittr, zoo
knitr, stringr, rmarkdown, testthat (>= 3.0), shinyAce,
clipr, dplyr, ggplot2, cranlogs, xfun, zoo
covr, knitr, markdown, modeldata, rmarkdown, shinytest,
spelling, testthat (>= 3.0.0)
rmarkdown, testthat, mockery, spelling, covr
coda, knitr (>= 1.9), rstan (>= 2.7), testthat
coda, knitr (>= 1.9), rstan (>= 2.7), rmarkdown (>= 0.8.1),
testthat
coda, knitr (>= 1.9), rmarkdown (>= 0.8.1), rstanarm (>=
2.9.0-3), testthat
coda, knitr (>= 1.9), rmarkdown (>= 0.8.1), rstanarm (>=
2.14.1), testthat
coda, knitr (>= 1.9), rmarkdown (>= 0.8.1), rstanarm (>=
2.15.3), testthat
coda, knitr (>= 1.9), rmarkdown (>= 0.8.1), rstanarm (>=
2.17.4), testthat
cmdstanr (>= 0.4.0), coda, knitr (>= 1.9), posterior (>=
1.0.0), rmarkdown (>= 0.8.1), rsconnect (>= 0.4.2), rstanarm
(>= 2.17.4), testthat
diffobj, globals (>= 0.14.0), ggplot2, vdiffr (>= 1.0.0),
plotly, rstudioapi, shinyWidgets, shinytest (>= 1.5.1),
shinyvalidate (>= 0.1.2), showimage, knitr, usethis
deSolve, diffobj, ggplot2, knitr, plotly, png, rstudioapi,
shinyWidgets, shinytest (>= 1.5.1), shinyvalidate (>= 0.1.2),
showimage, usethis, vdiffr (>= 1.0.0), spelling
PBSmapping, ape, class, cluster, effsize, gpclib, grid, ips,
randomForest, nnet, scales, smirnov, vegan, MASS, adabag,
e1071, neuralnet, rpart, tree
adabag, apcluster, ape, class, cluster, dbscan, e1071,
effsize, grid, ips, kernlab, MASS, mclust, meanShiftR,
neuralnet, nnet, PBSmapping, randomForest, rpart, scales,
smirnov, tapkee, tree, vegan
apcluster, ape, class, cluster, dbscan, e1071, effsize, grid,
ips, kernlab, MASS, mclust, meanShiftR, nnet, phangorn,
randomForest, rpart, smirnov, StatMatch, tapkee, tree, vegan
adabag, apcluster, ape, class, cluster, dbscan, e1071,
effsize, grid, ips, kernlab, MASS, mclust, meanShiftR,
neuralnet, nnet, PBSmapping, phangorn, randomForest, rpart,
smirnov, StatMatch, tapkee, tree, vegan
apcluster, ape, class, cluster, dbscan, e1071, effsize, grid,
ips, kernlab, MASS, mclust, meanShiftR, nnet, PBSmapping,
phangorn, randomForest, rpart, smirnov, StatMatch, tapkee,
tree, vegan
knitr, energy, mvoutlier, shiny, jsonlite, akima
knitr, energy, mvoutlier, shiny, jsonlite, interp, MBA
knitr, energy, mvoutlier, shiny, jsonlite, interp, MBA,
bs4Dash
knitr, markdown, energy, mvoutlier, shiny, jsonlite, interp,
MBA, bs4Dash
knitr, rmarkdown, prettydoc, curl, jsonlite
covr, cowplot, testthat, knitr, rmarkdown
knitr, ggplot2, testthat (>= 3.0.0), rmarkdown, mopac, hms,
stringr, readr
knitr, rmarkdown, DT, testthat, covr, rstudioapi
BSgenome, BSgenome.Hsapiens.UCSC.hg19, cowsay, ggpubr, knitr,
rmarkdown, covr, testthat, prettydoc, pheatmap
BSgenome.Hsapiens.UCSC.hg19, cowsay, ggpubr, knitr,
rmarkdown, covr, testthat, prettydoc, pheatmap
BSgenome, BSgenome.Hsapiens.UCSC.hg19, covr, fuzzyjoin,
ggfittext, knitr, pheatmap, rmarkdown, roxygen2, R.utils,
testthat
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, doFuture, flexmix, GenomicRanges,
GenSA, ggalluvial, ggfittext, ggplotify, IRanges, knitr,
patchwork, pheatmap, pracma, quadprog, R.utils, RColorBrewer,
reticulate, markdown, rmarkdown, roxygen2, testthat, tibble
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, doFuture, flexmix, GenomicRanges,
GenSA, ggalluvial, ggfittext, ggplotify, IRanges, knitr,
markdown, nnls, patchwork, pheatmap, quadprog, R.utils,
RColorBrewer, reticulate, rmarkdown, roxygen2, testthat,
tibble, ggrepel
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, doFuture, flexmix, GenomicRanges,
GenSA, ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel,
IRanges, knitr, markdown, nnls, patchwork, pheatmap, quadprog,
R.utils, RColorBrewer, reticulate, rmarkdown, roxygen2,
testthat, tibble
Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19, circlize,
covr, doFuture, flexmix, GenomicRanges, GenSA, ggalluvial,
ggfittext, ggplotify, IRanges, knitr, lsei, patchwork,
pheatmap, quadprog, R.utils, RColorBrewer, rmarkdown, roxygen2,
testthat, tibble
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, covr, doFuture, flexmix, GenomicRanges, GenSA,
ggalluvial, ggfittext, ggplotify, IRanges, knitr, patchwork,
pheatmap, quadprog, R.utils, RColorBrewer, rmarkdown, roxygen2,
testthat, tibble
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, covr, doFuture, flexmix, GenomicRanges, GenSA,
ggalluvial, ggfittext, ggplotify, IRanges, knitr, patchwork,
pheatmap, pracma, quadprog, R.utils, RColorBrewer, rmarkdown,
roxygen2, testthat, tibble
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, doFuture, flexmix, GenomicRanges,
GenSA, ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel,
IRanges, knitr, markdown, nnls, patchwork, pheatmap, quadprog,
R.utils, RColorBrewer, reticulate, rmarkdown, roxygen2,
testthat, tibble, scales, matrixStats
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, doFuture, flexmix,
GenomicRanges, GenSA, ggalluvial, ggcorrplot, ggfittext,
ggplotify, ggrepel, IRanges, knitr, markdown, matrixStats,
nnls, patchwork, pheatmap, quadprog, R.utils, RColorBrewer,
reticulate, rmarkdown, roxygen2, scales, synchronicity,
testthat, tibble, UCSCXenaTools
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, doFuture, flexmix,
GenomicRanges, GenSA, ggalluvial, ggcorrplot, ggfittext,
ggplotify, ggrepel, IRanges, knitr, lpSolve, markdown,
matrixStats, nnls, patchwork, pheatmap, quadprog, R.utils,
RColorBrewer, reticulate, rmarkdown, roxygen2, scales,
synchronicity, testthat, tibble, UCSCXenaTools
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, doFuture, flexmix,
GenomicRanges, GenSA, ggalluvial, ggcorrplot, ggfittext,
ggplotify, ggrepel, IRanges, knitr, lpSolve, markdown,
matrixStats, nnls, patchwork, pheatmap, quadprog, R.utils,
RColorBrewer, reticulate, rmarkdown, roxygen2, scales,
synchronicity, testthat, tibble, UCSCXenaTools, copynumber
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, GenomicRanges, GenSA,
ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel, IRanges,
knitr, lpSolve, markdown, matrixStats, nnls, patchwork,
pheatmap, quadprog, R.utils, RColorBrewer, reticulate,
rmarkdown, roxygen2, scales, synchronicity, testthat, tibble,
UCSCXenaTools, copynumber
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, GenomicRanges, GenSA,
ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel, IRanges,
knitr, lpSolve, markdown, matrixStats, nnls, patchwork,
pheatmap, quadprog, R.utils, RColorBrewer, reticulate,
rmarkdown, roxygen2, scales, synchronicity, testthat, tibble,
UCSCXenaTools, copynumber, parallel
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, copynumber, covr, digest, GenomicRanges,
GenSA, ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel,
IRanges, knitr, lpSolve, markdown, matrixStats, nnls, parallel,
patchwork, pheatmap, quadprog, R.utils, RColorBrewer,
reticulate, rmarkdown, roxygen2, scales, synchronicity,
testthat, tibble, UCSCXenaTools
covr, knitr, rmarkdown, ggplot2, testthat
testthat (>= 2.1.0), covr, ggplot2, ggraph, knitr, rmarkdown
testthat (>= 2.1.0), covr, ggplot2, ggraph, knitr, rmarkdown,
ompr, ompr.roi, ROI.plugin.glpk, ROI
ggplot2, dplyr, ggrepel, testthat (>= 2.1.0), knitr,
rmarkdown, covr
pwr, parallel, knitr, rmarkdown, testthat
pwr, parallel, knitr, rmarkdown, tinytest
ggplot2, knitr, rmarkdown, testthat (>= 3.0.0), tidyfst
covr, knitr, rmarkdown, sp, testthat, trip, vdiffr
covr, knitr, rmarkdown, sp, testthat (>= 2.1.0), trip, vdiffr
knitr, prettydoc, testthat, rmarkdown, gplots
knitr, prettydoc, testthat, gplots, rmarkdown
arm, ggplot2, knitr, plyr, purrr, rmarkdown, stats, testthat
(>= 2.1.0), tidyr
haven, microbenchmark, stringr, testthat, reshape2
haven, microbenchmark, stringr, testthat, surveysd
haven, microbenchmark, stringr, testthat, surveysd, sampling
haven, microbenchmark, stringr, tinytest, sampling, covr
ggplot2, knitr, boot, broom, testthat, rmarkdown
ggplot2, knitr, boot, broom, rmarkdown, tinytest
ltmle, RUnit, knitr, igraph, ggplot2, Hmisc
ltmle, tmlenet, RUnit, knitr, ggplot2, Hmisc, copula,
mvtnorm, bindata
tmlenet, RUnit, ltmle, knitr, ggplot2, Hmisc, copula,
mvtnorm, bindata
copula, tmlenet, RUnit, ltmle, knitr, ggplot2, Hmisc,
mvtnorm, bindata
copula, RUnit, ltmle, knitr, ggplot2, Hmisc, mvtnorm, bindata
qtl, knitr, rmarkdown, testthat, devtools, roxygen2
testthat (>= 3.0.0), popkin, bnpsd (>= 1.3.2), kinship2,
RColorBrewer, knitr, rmarkdown
covr (>= 3.5.0), secret, testthat, knitr, rmarkdown,
fastmatch
knitr, lme4, nlme, testthat, shiny, e1071, ggplot2
knitr, lme4, nlme, testthat, shiny, e1071, ggplot2, tidyr,
geepack, rmarkdown
knitr, lme4, nlme, testthat, shiny, e1071, ggplot2, tidyr,
geepack, rmarkdown, future, splines, covr
plyr, knitr, rmarkdown, pkgdown, covr, testthat, kableExtra,
ggplot2, broom
plyr, purrr, future, knitr, rmarkdown, pkgdown, covr,
testthat, kableExtra, ggplot2, broom
dplyr, tidyr, ggplot2, scales, testthat, knitr, rmarkdown
dplyr, tidyr, ggplot2, scales, testthat, knitr, rmarkdown,
covr
parallel, dplyr, tidyr, ggplot2, scales, testthat, knitr,
rmarkdown, covr
simmer.plot, parallel, dplyr, tidyr, testthat, knitr,
rmarkdown, covr
simmer.plot, parallel, dplyr, tidyr, testthat, knitr,
rmarkdown
simmer.plot, parallel, dplyr, tidyr, testthat, knitr,
rmarkdown, rticles
simmer.plot, parallel, testthat, knitr, rmarkdown, rticles
knitr, rmarkdown, readxl, testthat, covr
parallel, Rcgmin, Rvmmin, R.rsp, knitr, testthat
ggplot2, knitr, minpack.lm, rmarkdown, tmap
knitr, rmarkdown, testthat, covr, devtools, spelling
knitr, palmerpenguins, rgdal, rgeos, rmarkdown
knitr, palmerpenguins, rgdal, rgeos, rmarkdown, s2
knitr, glue, palmerpenguins, rgdal, rgeos, rmarkdown, s2
DT, glue, knitr, palmerpenguins, pals, plotly, rgdal, rgeos,
rmarkdown, s2, shiny, shinycssloaders, tibble
DT, glue, knitr, palmerpenguins, pals, patchwork, rgdal,
rgeos, rmarkdown, s2, shinycssloaders, tibble
DT, glue, knitr, pals, palmerpenguins, patchwork, rgdal,
rgeos, rmarkdown, s2, shinycssloaders, tibble
DT, glue, knitr, pals, palmerpenguins, patchwork, rgdal,
rgeos, rmarkdown, s2, shinycssloaders, tibble, tidytext
DT, glue, gt, knitr, pals, palmerpenguins, patchwork, rgdal,
rgeos, rmarkdown, s2, tibble, tidytext
MASS, testthat, ggplot2, knitr, rmarkdown
testthat, knitr, rmarkdown, dplyr, VIM, randomForest, glmnet
, missForest, norm
tinytest, knitr, rmarkdown, dplyr, VIM, randomForest, glmnet
, missForest, norm
covr, future, knitr, progressr, rjags, rmarkdown, testthat
covr, future, knitr, progressr, rjags, rmarkdown, testthat
(>= 3.0.0), withr
Rmpi, snow, Hmisc, copula, foreach, doParallel, fGarch
lattice, Rmpi, Hmisc, copula, foreach, doParallel, fGarch,
robustbase
Rmpi, Hmisc, copula, foreach, doParallel, fGarch, robustbase
parallel, Amelia, copula, quantreg, splines, foreign
parallel, Amelia, copula, quantreg, splines, foreign,
KernSmooth
parallel, Amelia, copula, quantreg, splines, foreign,
KernSmooth, semTools
parallel, Amelia, quantreg, splines, foreign, KernSmooth,
semTools
parallel, Amelia, quantreg, splines, foreign, KernSmooth,
semTools, OpenMx
parallel, Amelia, quantreg, splines, foreign, KernSmooth,
semTools, OpenMx(>= 2.0.0), copula
parallel, Amelia, quantreg, splines, foreign, KernSmooth,
semTools(>= 0.4-15), OpenMx(>= 2.0.0), copula
parallel, Amelia, quantreg, splines, foreign, KernSmooth,
semTools, OpenMx, copula
knitr, rmarkdown, ggplot2, dplyr, tidyr, forcats, kableExtra,
stringr
knitr, rmarkdown, ggplot2, dplyr, tidyr, forcats, kableExtra,
stringr, semPlot, testthat, covr, badger
knitr, rmarkdown, ggplot2, dplyr, tidyr, forcats, kableExtra,
stringr, testthat, covr, badger
knitr, rmarkdown, ggplot2, dplyr, tidyr, forcats, stringr,
testthat, covr, badger
testthat, knitr, rmarkdown, ggplot2, scales, grid, gridExtra,
survival
testthat, knitr, rmarkdown, ggplot2, scales, grid, gridExtra,
survival, gee, splines, formatR, mgcv, ordinal
testthat, knitr, rmarkdown, ggplot2, grid, gridExtra,
survival, splines, formatR, mgcv
testthat, knitr, rmarkdown, ggplot2, grid, gridExtra,
survival, splines, formatR, mgcv, Matrix
testthat, knitr, rmarkdown, ggplot2, scales, grid, gridExtra,
survival, gee
testthat, knitr, rmarkdown, ggplot2, scales, grid, gridExtra,
survival, gee, splines
testthat, knitr, rmarkdown, ggplot2, scales, grid, gridExtra,
survival, gee, splines, ordinal
testthat, knitr, rmarkdown, ggplot2, scales, grid, gridExtra,
survival, gee, splines, ordinal, formatR, mgcv
testthat, knitr, rmarkdown, ggplot2, scales, grid, gridExtra,
survival, gee, splines, formatR, mgcv
covr, dplyr, formatR, gee, ggplot2, grid, gridExtra,
hedgehog, knitr, magrittr, Matrix, mgcv, ordinal, pracma,
rmarkdown, scales, splines, survival, testthat
covr, dplyr, formatR, gee, ggplot2, grid, gridExtra,
hedgehog, knitr, magrittr, Matrix, mgcv, ordinal, pracma,
rmarkdown, scales, splines, survival, testthat, gtsummary
covr, dplyr, formatR, gee, ggplot2, grid, gridExtra,
hedgehog, knitr, magrittr, Matrix, mgcv, ordinal, pracma,
rmarkdown, scales, splines, survival, testthat, gtsummary,
survminer
testthat, knitr, rmarkdown, microbenchmark, lubridate
popkin, testthat, knitr, rmarkdown, bnpsd, BEDMatrix
digest, ggplot2, knitr, rmarkdown, testthat, glmnet, mvtnorm
rcmdcheck, git2r, shiny, miniUI, withr, usethis, fs, details,
roxygen2, testthat, knitr, rmarkdown
knitr, rmarkdown, bookdown, testthat (>= 2.1.0)
knitr, rmarkdown, SummarizedExperiment, SingleCellExperiment,
Seurat, Rtsne, cowplot, testthat
knitr, rmarkdown, SummarizedExperiment, SingleCellExperiment,
Seurat, SeuratData, Rtsne, cowplot, testthat
knitr, rmarkdown, SummarizedExperiment, SingleCellExperiment,
SeuratObject, Rtsne, cowplot, testthat, wrswoR
lme4, psych, sm, gregmisc, GPArotation, splines, ic.infer
lme4, psych, sm, gregmisc, GPArotation, splines, ic.infer,
coda
eRm, ltm, MCMCglmm, mirt, mokken, mRm, plink, gregmisc,
GPArotation, fdrtool
eRm, ltm, MCMCglmm, mirt, mokken, mRm, plink, GPArotation,
fdrtool, lme4
eRm, ltm, MCMCglmm, mirt, mokken, mRm, plink, GPArotation,
fdrtool, lme4, difR, lavaan, semTools
eRm, ltm, MCMCglmm, mirt, mokken, mRm, plink, GPArotation,
fdrtool, lme4, difR, lavaan, semTools, MultiLCIRT
eRm, ltm, MCMCglmm, mirt, mokken, mRm, plink, GPArotation,
fdrtool, lme4, difR, lavaan, semTools, MultiLCIRT, rcppbugs,
IsingFit
eRm, ltm, MCMCglmm, mirt, mokken, mRm, plink, GPArotation,
fdrtool, lme4, difR, semTools, MultiLCIRT, rcppbugs, IsingFit
eRm, ltm, MCMCglmm, mokken, mRm, plink, GPArotation, fdrtool,
lme4, difR, semTools, MultiLCIRT, rcppbugs, IsingFit,
MplusAutomation (>= 0.6)
eRm, ltm, MCMCglmm, mRm, GPArotation, lme4, semTools,
MultiLCIRT, IsingFit, MplusAutomation (>= 0.6)
eRm, ltm, MultiLCIRT, mRm, MCMCglmm, lme4, GPArotation,
semTools, IsingFit, MplusAutomation (>= 0.6)
eRm, ltm, MultiLCIRT, psychomix, psychotools, mRm, MCMCglmm,
lme4, GPArotation, semTools, IsingFit, MplusAutomation (>= 0.6)
eRm, ltm, MultiLCIRT, psychomix, psychotools, mRm, MCMCglmm,
lme4, GPArotation, semTools, IsingFit, MplusAutomation
gtools, ic.infer, igraph, Matrix, miceadds, pbivnorm, psych,
sm
gtools, ic.infer (>= 1.1-6), igraph, Matrix, miceadds,
pbivnorm, psych, sm
igraph, Matrix, miceadds, pbivnorm, psych, sm
coda, igraph, lavaan, lavaan.survey, MASS, Matrix, miceadds,
mirt, mvtnorm, pbivnorm, pbv, psych, sfsmisc, sm, survey
coda, igraph, lavaan, lavaan.survey, MASS, Matrix, miceadds,
minqa, mirt, mvtnorm, nloptr, optimx, pbivnorm, pbv, psych,
sfsmisc, sm, survey
igraph, Matrix, lavaan.survey, miceadds, pbivnorm, psych,
sfsmisc, sm, survey
knitr, rmarkdown, tcltk, rgl, testthat (>= 2.1.0)
knitr, rmarkdown, tcltk, testthat (>= 2.1.0)
knitr, testthat, spelling, pkgdown, roxygen2 (>= 7.0.0)
caret, dendextend, dtwclust, dtwSat (>= 0.2.7), digest,
e1071, FNN, gdalcubes (>= 0.6.0), geojsonsf, httr, jsonlite,
kohonen(>= 3.0.11), leafem (>= 0.2.0), leaflet (>= 2.1.1), luz
(>= 0.2.0), methods, mgcv, openxlsx, randomForest,
RcppArmadillo (>= 0.11), scales, stars (>= 0.5), testthat (>=
3.1.3), torchopt(>= 0.1.1), xgboost, zoo
caret, dendextend, dtwclust, dtwSat (>= 0.2.7), DiagrammeR,
digest, e1071, FNN, gdalcubes (>= 0.6.0), geojsonsf, httr,
jsonlite, kohonen(>= 3.0.11), leafem (>= 0.2.0), leaflet (>=
2.1.1), luz (>= 0.2.0), methods, mgcv, openxlsx, randomForest,
randomForestExplainer, RcppArmadillo (>= 0.11), scales, stars
(>= 0.5), testthat (>= 3.1.3), torchopt(>= 0.1.2), xgboost, zoo
caret, dendextend, dtwclust, DiagrammeR, digest, e1071, FNN,
gdalcubes (>= 0.6.0), geojsonsf, ggplot2, httr, jsonlite,
kohonen(>= 3.0.11), leafem (>= 0.2.0), leaflet (>= 2.1.1), luz
(>= 0.2.0), methods, mgcv, openxlsx, randomForest,
randomForestExplainer, RColorBrewer, RcppArmadillo (>= 0.11),
scales, stars (>= 0.5), testthat (>= 3.1.3), tmap, torchopt(>=
0.1.2), xgboost, zoo
testthat (>= 3.0.0), Rcpp, RcppArmadillo, wk, covr
cluster, coin, lsmeans, lmtest, stringdist
arm, cluster, coin, lme4, lsmeans, lmtest, Matrix, stringdist
arm, cluster, coin, lme4, lsmeans, lmtest, Matrix,
stringdist, haven
arm, cluster, effects, lme4, lmerTest, lmtest, lsmeans
AICcmodavg, arm, cluster, effects, lme4, lmerTest, lmtest,
lsmeans
arm, cluster, effects, lme4, lmerTest, lmtest, lsmeans,
testthat
AICcmodavg, arm, cluster, ggrepel, lmerTest, lmtest, lsmeans,
testthat
AICcmodavg, arm, cluster, ggrepel, lmerTest, lmtest, lsmeans,
pbkrtest, testthat
AICcmodavg, arm, cluster, ggrepel, lmerTest, lmtest, lsmeans,
pbkrtest (>= 0.4-6), testthat
AICcmodavg, arm, cluster, ggrepel, lmerTest, lmtest, lsmeans,
pbkrtest (>= 0.4-6)
AICcmodavg, arm, car, cluster, ggrepel, lmerTest, lmtest,
lsmeans, MASS
AICcmodavg, arm, car, cluster, gridExtra, ggrepel, lmerTest,
lmtest, lsmeans, MASS
AICcmodavg, arm, car, cluster, gridExtra, ggrepel, lmerTest,
lmtest, lsmeans, knitr
AICcmodavg, arm, car, cluster, gridExtra, ggrepel, lmerTest,
lmtest, lsmeans
AICcmodavg, arm, car, cluster, GPArotation, gridExtra,
ggrepel, lmerTest, lmtest
AICcmodavg, car, cluster, GPArotation, gridExtra, ggrepel,
ggridges, lmerTest, lmtest, rstanarm, survey, wesanderson
AICcmodavg, car, cluster, GPArotation, gridExtra, ggrepel,
ggridges, lmerTest, lmtest, rstanarm, survey, viridis,
wesanderson, Zelig
AICcmodavg, brms, car, cluster, GPArotation, gridExtra,
ggrepel, ggridges, pscl, rstanarm, survey, TMB, viridis,
wesanderson, Zelig
AICcmodavg, brms, car, cluster, GPArotation, gridExtra,
ggrepel, ggridges, pscl, rstanarm, survey, TMB, Zelig, testthat
brms, car, cluster, GPArotation, gridExtra, ggrepel,
ggridges, pscl, rstanarm, survey, TMB, Zelig, testthat
brms, car, cluster, cowplot, GPArotation, gridExtra, ggrepel,
ggridges, pscl, rstanarm, survey, TMB, Zelig, testthat
brms, car, cluster, cowplot, GPArotation, gridExtra,
ggridges, httr, pscl, rstanarm, survey, TMB, Zelig, testthat
brms, car, cluster, cowplot, GPArotation, gridExtra,
ggridges, httr, pscl, rmarkdown, rstanarm, survey, TMB, Zelig,
testthat
brms, car, clubSandwich, cluster, cowplot, haven,
GPArotation, ggrepel, glmmTMB, gridExtra, ggridges, httr, lme4,
nFactors, pscl, psych, rmarkdown, rstanarm, sandwich, splines,
survey, TMB, testthat
brms, car, cluster, cowplot, GPArotation, ggrepel, glmmTMB,
gridExtra, ggridges, httr, lme4 (>= 1.1-12), pscl, psych,
rmarkdown, rstanarm, survey, TMB, Zelig, testthat
brms, car, clubSandwich, cluster, cowplot, GPArotation,
ggrepel, glmmTMB, gridExtra, ggridges, httr, lme4 (>= 1.1-12),
nFactors, pscl, psych, rmarkdown, rstanarm, sandwich, survey,
TMB, testthat
brms, car, cluster, cowplot, GPArotation, ggrepel, glmmTMB,
gridExtra, ggridges, httr, lme4 (>= 1.1-12), nFactors, pscl,
psych, rmarkdown, rstanarm, sandwich, survey, TMB, testthat
brms, car, clubSandwich, cluster, cowplot, GPArotation,
ggrepel, glmmTMB, gridExtra, ggridges, httr, lme4, nFactors,
pscl, psych, rmarkdown, rstanarm, sandwich, survey, TMB,
testthat
Hmisc, sjmisc (>= 2.4.0), sjPlot, knitr, rmarkdown
ggplot2, Hmisc, sjmisc (>= 2.5.0), sjPlot, knitr, rmarkdown
ggplot2, glmmTMB, Hmisc, sjmisc (>= 2.6.1), sjPlot, survey,
knitr, rmarkdown, Zelig
ggplot2, glmmTMB, Hmisc, sjmisc, sjPlot, survey, knitr,
rmarkdown, Zelig
glmmTMB, Hmisc, sjmisc, sjPlot, survey, knitr, rmarkdown,
Zelig, testthat
glmmTMB, Hmisc, sjmisc, sjPlot, survey, knitr, rmarkdown,
snakecase, Zelig, testthat
ggplot2, Hmisc, sjmisc (>= 2.6.1), sjPlot, snakecase, knitr,
rmarkdown
ggplot2, glmmTMB, Hmisc, sjmisc (>= 2.6.1), sjPlot, survey,
knitr, rmarkdown
dplyr, sjmisc, sjPlot, knitr, rmarkdown, snakecase, testthat
dplyr, magrittr, sjmisc, sjPlot, knitr, rlang, rmarkdown,
snakecase, testthat
dplyr, haven (>= 1.1.2), magrittr, sjmisc, sjPlot, knitr,
rlang, rmarkdown, snakecase, testthat
coin, foreign, haven, lme4, stringdist, testthat
coin, foreign, haven, lme4, nlme, stringdist
arm, coin, foreign, haven, lme4, nlme, stringdist (>= 0.9.1)
arm, coin, foreign, haven, lme4, Matrix, nlme, stringdist (>=
0.9.1)
arm, coin, foreign, lme4, Matrix, nlme, stringdist (>= 0.9.2)
Hmisc, mice, sjPlot, sjstats (>= 0.7.0), knitr, rmarkdown
Hmisc, mice, sjPlot, sjstats (>= 0.9.0), knitr, rmarkdown
ggplot2, graphics, Hmisc, mice, sjPlot, sjstats (>= 0.10.0),
knitr, rmarkdown
ggplot2, graphics, Hmisc, mice, sjPlot (>= 2.3.2), sjstats
(>= 0.10.3), knitr, rmarkdown
ggplot2, graphics, Hmisc, mice, sjPlot (>= 2.3.2), sjstats
(>= 0.11.1), knitr, rmarkdown
ggplot2, graphics, Hmisc, mice, sjPlot (>= 2.4.0), sjstats
(>= 0.13.0), knitr, rmarkdown
ggplot2, graphics, mice, sjPlot (>= 2.4.0), sjstats (>=
0.13.0), knitr, rmarkdown
ggplot2, graphics, mice, sjPlot (>= 2.4.0), sjstats (>=
0.13.0), knitr, rmarkdown, testthat
ggplot2, graphics, mice, sjPlot, sjstats, knitr, rmarkdown,
testthat
ggplot2, graphics, mice, sjPlot, sjstats, knitr, rmarkdown,
rstudioapi, stringdist, testthat, tidyr
ggplot2, graphics, haven (>= 1.1.2), mice, sjPlot, sjstats,
knitr, rmarkdown, stringdist, testthat, tidyr
ggplot2, graphics, haven (>= 2.0.0), mice, sjPlot, sjstats,
knitr, rmarkdown, stringdist, testthat, tidyr
ggplot2, graphics, haven (>= 2.0.0), mice, nnet, sjPlot,
sjstats, knitr, rmarkdown, stringdist, testthat, tidyr
AER, arm, car, ggplot2, graphics, Hmisc, lmerTest, pbkrtest
(>= 0.4-7), pROC, pwr, survey
AER, arm, car, ggplot2, graphics, Hmisc, lmerTest, pbkrtest
(>= 0.4-7), pROC, pwr, survey, tidyverse
AER, arm, car, ggplot2, graphics, Hmisc, lmerTest, pbkrtest
(>= 0.4-7), pROC, survey, tidyverse
AER, arm, car, ggplot2, graphics, Hmisc, lmerTest, pbkrtest
(>= 0.4-7), pROC, survey, rstanarm, tidyverse, knitr
AER, arm, brms, car, ggplot2, graphics, Hmisc, lmerTest,
pbkrtest (>= 0.4-7), pROC, survey, rstanarm, tidyverse, knitr
AER, arm, brms, car, ggplot2, graphics, Hmisc, lmerTest,
pbkrtest (>= 0.4-7), pROC, psych, survey, rstanarm, tidyverse,
knitr
AER, arm, brms, car, ggplot2, graphics, Hmisc, lmerTest,
pbkrtest (>= 0.4-7), pROC, psych, survey, rstan, rstanarm,
tidyverse, Zelig
AER, arm, brms, car, ggplot2, graphics, Hmisc, knitr,
lmerTest, pbkrtest (>= 0.4-7), pROC, psych, sjPlot, survey,
rstan, rstanarm, tidyverse, Zelig
AER, apaTables, arm, brms, car, ggplot2, graphics, Hmisc,
knitr, MBESS, pbkrtest (>= 0.4-7), pROC, psych, sjPlot, survey,
rstan, rstanarm, tidyverse, Zelig
AER, apaTables, arm, brms, car, ggplot2, graphics, knitr,
MBESS, pbkrtest (>= 0.4-7), pROC, psych, sjPlot, survey, rstan,
rstanarm, Zelig
AER, apaTables, arm, brms, car, ggplot2, ggridges, graphics,
knitr, loo, MBESS, mediation, pbkrtest (>= 0.4-7), pROC, psych,
sjPlot, survey, rstan, rstantools, rstanarm, Zelig
AER, arm, brms, car, ggplot2, ggridges, graphics, knitr, loo,
mediation, pbkrtest (>= 0.4-7), pROC, psych, scales, splines,
sjPlot, survey, rstan, rstantools, rstanarm, VGAM, Zelig
AER, brms, car, ggplot2, ggridges, graphics, knitr, loo,
mediation, pbkrtest (>= 0.4-7), pROC, psych, sandwich, scales,
splines, sjPlot, survey, rstan, rstantools, rstanarm, VGAM,
Zelig, testthat
brms, car, ggplot2, ggridges, graphics, knitr, loo,
mediation, pbkrtest (>= 0.4-7), pROC, psych, sandwich, scales,
splines, sjPlot, survey, rstan, rstantools, rstanarm, VGAM,
Zelig, testthat
brms, car, coin, ggplot2, ggridges, graphics, glmmTMB, knitr,
loo, mediation, nlme, pbkrtest (>= 0.4-7), pROC, psych, pwr,
sandwich, scales, splines, sjPlot, survey, rstan, rstantools,
rstanarm, rstudioapi, VGAM, Zelig, testthat
brms, car, coin, ggplot2, graphics, httr, knitr, mediation,
nlme, pbkrtest (>= 0.4-7), pwr, sandwich, sjPlot, survey,
rstan, rstanarm, VGAM, Zelig, testthat
brms, car, coin, ggplot2, graphics, httr, knitr, mediation,
nlme, pbkrtest (>= 0.4-7), pscl, pwr, sandwich, sjPlot, survey,
rstan, rstanarm, VGAM, Zelig, testthat
brms, car, coin, ggplot2, graphics, nlme, pscl, pwr, sjPlot,
survey, rstan, rstanarm, testthat
brms, car, coin, ggplot2, graphics, pscl, pwr, sjPlot,
survey, rstan, testthat
AER, arm, Hmisc, lmerTest, pbkrtest (>= 0.4-6), pwr
AER, arm, dplyr, Hmisc, lmerTest, pbkrtest (>= 0.4-6), pwr
AER, arm, ggplot2, Hmisc, lmerTest, pbkrtest (>= 0.4-6), pwr
AER, arm, ggplot2, graphics, Hmisc, lmerTest, pbkrtest (>=
0.4-6), pwr
AER, arm, car, ggplot2, graphics, Hmisc, lmerTest, pbkrtest
(>= 0.4-6), pROC, pwr
AER, arm, car, ggplot2, graphics, Hmisc, lmerTest, pbkrtest
(>= 0.4-6), pROC, pwr, survey
knitr, lintr, lme4, mlbench, rmarkdown, sjPlot, stats,
testthat (>= 3.0.1)
CompQuadForm, SKAT, Matrix, igraph, coxme, survival
knitr, rmarkdown, devtools, lmtest, car, tseries, het.test,
testthat, mlbench
knitr, rmarkdown, devtools, lmtest, car, tseries, tibble,
het.test, testthat, mlbench
knitr, rmarkdown, devtools, lmtest, car, tseries, tibble,
testthat, mlbench
knitr, rmarkdown, devtools, lmtest, car, tseries, tibble,
testthat, mlbench, expm, arrangements, quantreg, gmp, Rmpfr,
cubature, mvtnorm
knitr, rmarkdown, testthat (>= 3.0.0), lmtest (>= 0.9), ivreg
(>= 0.6), sandwich (>= 3.0)
extrafont, rmarkdown, testthat (>= 2.0.0), withr, covr
covr, extrafont, rmarkdown, sf, testthat (>= 2.0.0), withr
covr, extrafont, rmarkdown, sf, testthat (>= 2.0.0)
covr, extrafont, lubridate, rmarkdown, sf, testthat (>=
2.0.0)
covr, data.table, dtplyr, extrafont, lubridate, rmarkdown,
sf, testthat (>= 2.0.0)
covr, crayon, data.table, dtplyr, extrafont, haven,
lubridate, rmarkdown, testthat (>= 2.0.0), withr
earth, ggplot2, recipes (>= 0.1.15), rmarkdown, spelling,
timetk (>= 2.6.0), workflows (>= 0.2.2), yardstick (>= 0.0.8)
earth, ggplot2, recipes (>= 0.1.15), rmarkdown, spelling,
timetk (>= 2.6.0), workflows (>= 0.2.2), yardstick (>= 0.0.8),
workflowsets
tidyr, rnaturalearth, dplyr, ggplot2, terra, ncdf4, scales,
rmarkdown, covr, testthat, knitr
knitr, rmarkdown, testthat, kableExtra, covr
testthat (>= 3.0.0), covr, knitr, rmarkdown, texPreview
covr, knitr, rmarkdown, testthat (>= 3.0.0), texPreview
covr, knitr, rmarkdown, svglite, testthat (>= 3.0.0),
texPreview
knitr, lme4, MASS, rmarkdown, splines, testthat
knitr, lme4, MASS, rmarkdown, splines, testthat, R.rsp
testthat (>= 3.0.0), knitr, rmarkdown, admixr, units, rgdal,
magick, cowplot, forcats, rsvg
covr, knitr, pkgdown, rgdal, rmarkdown, testthat
knitr, captioner, formatR, rcrossref, rmarkdown
jsonlite, knitr, pdftools, rmarkdown, stats, svglite, glue
jsonlite, knitr, pdftools, rmarkdown, svglite, leaflet,
testthat, covr
covr, dplyr (>= 0.8.3), knitr, lubridate, rmarkdown, testthat
(>= 2.1.0), xml2
covr, dplyr (>= 1.0.0), knitr, lubridate, rmarkdown, testthat
(>= 3.0.0)
rslurm, knitr, rmarkdown, covr, tinytest
rpanel, tkrplot, rgl, misc3d, akima, gam
rgl, misc3d, akima, gam, tkrplot, rpanel (>= 1.1-4), tcltk
rgl, misc3d, interp, gam, tkrplot, rpanel (>= 1.1-4), tcltk
knitr, prefmod, MPsychoR, calibrate, ggplot2, rmarkdown
knitr, rasterVis, rgdal, rmarkdown, testthat, utils
knitr, rgdal, rmarkdown, testthat, utils
knitr, rgdal, rmarkdown, roxygen2, sp, testthat, utils, covr
testthat, mlbench, rpart, knitr, rmarkdown
testthat, stddiff, tableone, knitr, dplyr, purrr, markdown,
rmarkdown
crayon, lintr, maps, testthat, SpatialEpi
crayon, lintr, maps, testthat, SpatialEpi, knitr, rmarkdown
knitr, rmarkdown, mlmRev, Kernelheaping, R.rsp
knitr, rmarkdown, mlmRev, R.rsp, Kernelheaping
testthat (>= 3.0.0), covr, xml2, knitr, rmarkdown, tidyr,
hdrcde, ggplot2, scales
Mcomp, forecast, numDeriv, testthat, knitr, rmarkdown
Mcomp, numDeriv, testthat, knitr, rmarkdown
Mcomp, forecast (>= 7.0), numDeriv, testthat, knitr,
rmarkdown, doMC, doParallel, foreach
legion, numDeriv, testthat, knitr, rmarkdown, doMC,
doParallel, foreach
covr, knitr, lwgeom, raster, rmarkdown, sp, testthat
covr, knitr, lwgeom, rmarkdown, sp, testthat
covr, knitr, lwgeom, rmarkdown, sp, terra, testthat
knitr, rmarkdown, fGarch, RcppArmadillo (>= 0.10.6.0.0),
testthat (>= 3.0.0)
knitr, numDeriv, tkrplot, testthat, rmarkdown
knitr, numDeriv, revdbayes (>= 1.1.0), tkrplot, testthat,
rmarkdown, SuppDists
bookdown, knitr, roxygen2 (>= 6.0.0), testthat
bookdown, knitr, rmarkdown, roxygen2 (>= 6.0.0), testthat
network, rgl, numDeriv, SparseM, statnet
testthat, covr, tibble, purrrlyr, knitr, rmarkdown
testthat, covr, tibble, purrrlyr, knitr, rmarkdown, magrittr
knitr, rmarkdown, covr, testthat, shinydashboard, leaflet,
plotly, DT
testthat, knitr, rmarkdown, ggplot2, reshape2, formatR
ggplot2, knitr, reshape2, rmarkdown, testthat
clipr (>= 0.8.0), testthat (>= 3.1.2), kableExtra, knitr,
rmarkdown
USpopcenters, cluster, geosphere, ggplot2 (>= 3.3.2), sf (>=
0.9-7), testthat (>= 2.3.2), tibble (>= 3.0.3), tigris (>=
1.0), units
roxygen2 (>= 5.0.1), testthat, knitr, rmarkdown, covr
e1071, class, chemometrics, plyr, plotKML, mgcv, nlme,
spatstat, scales, date, lava, rgdal
lattice, rgdal, RCurl, XML, SSOAP, XMLSchema
lattice, rgdal, RCurl, XML, SSOAP, XMLSchema, dismo
lattice, XMLSchema, SSOAP, dismo, raster, rgdal, jsonlite,
RODBC
lattice, XMLSchema, SSOAP, dismo, raster, RODBC, rgdal,
jsonlite
lattice, dismo, raster, rgdal, jsonlite, RODBC, httr, rgeos
lattice, dismo, rgdal, jsonlite, RODBC, httr, rgeos, rvest
lattice, dismo, rgdal, jsonlite, RODBC, httr, rgeos, rvest,
testthat, stringr
lattice, dismo, rgdal, jsonlite, RODBC, httr, rgeos, rvest,
testthat
dismo, rgdal, jsonlite, RODBC, httr, rgeos, rvest, testthat,
stringr, latticeExtra, RCurl, XML, ggplot2, gridExtra, viridis
rgdal, jsonlite, RODBC, httr, sf, rgeos, rvest, testthat,
stringr, latticeExtra, RCurl, XML, ggplot2, gridExtra, viridis,
mapview, rasterVis
rgdal, jsonlite, RODBC, httr, rgeos, rvest, testthat,
stringr, latticeExtra, RCurl, XML, ggplot2, gridExtra, viridis
rgdal, jsonlite, httr, sf, rgeos, rvest, odbc, RSQLite,
testthat, gridExtra, ggplot2, viridisLite, mapview, rasterVis
rgdal, jsonlite, httr, sf, wk, rvest, odbc, RSQLite,
testthat, scales
jsonlite, httr, rvest, sf, wk, terra, raster, odbc, RSQLite,
testthat, scales
jsonlite, httr, xml2, rvest, curl, sf, wk, terra, raster,
odbc, RSQLite, testthat, scales
jsonlite, httr, xml2, rvest, sf, wk, terra, raster, odbc,
RSQLite, testthat, scales
knitr, rmarkdown, rpanel, tcltk, tkrplot
sp, raster, rasterVis, tdr, meteoForecast
kinship2, scales, Matrix, gdata, doParallel, iterators,
parallel, qqman
tools, kinship2, scales, Matrix, gdata, doParallel,
iterators, parallel, qqman, rsnps, grid, gridExtra
rmarkdown, knitr, plyr, parallel, orthopolynom
rmarkdown, knitr, plyr, parallel, orthopolynom, testthat (>=
3.0.0)
testthat, covr, WaveletComp, devtools, googleCloudStorageR,
googleLanguageR
av, testthat, covr, WaveletComp, devtools,
googleCloudStorageR, googleLanguageR, knitr, rmarkdown,
spelling
base64, knitr, testthat (>= 2.1.0), withr, rmarkdown,
magrittr, lifecycle, webshot, spelling
base64, knitr, testthat (>= 2.1.0), withr, rmarkdown,
magrittr, lifecycle, webshot, spelling, covr
base64, knitr, testthat (>= 2.1.0), withr, rmarkdown,
magrittr, webshot, spelling, covr
gdata, knitr, rmarkdown, RCurl, rjson, testthat
gridExtra, RColorBrewer, knitr, rmarkdown, Cairo
spacetime (>= 0.2-0), gstat, maps, maptools, mapdata,
cshapes, xts, zoo
spacetime (>= 0.2-0), gstat, maps, maptools, mapdata,
cshapes, xts
spacetime (>= 0.2-0), gstat, maps, maptools, mapdata,
cshapes, xts, xtable, rgdal
spacetime (>= 0.2-0), gstat, maps, maptools, mapdata,
cshapes, xts, xtable
readr, spacetime, gstat, maps, maptools, mapdata, cshapes,
xtable, xts, testthat, rgdal, knitr, rmarkdown
readr, spacetime, leaflet, leafpop, mapdata, maps, maptools,
mapview, xts, testthat, rgdal, knitr, rmarkdown, webmockr,
kableExtra, skimr, clipr
readr, spacetime, leaflet, leafpop, mapdata, maps, maptools,
mapview, xts, testthat, rgdal, knitr, rmarkdown, webmockr,
kableExtra, skimr, clipr, units
devtools, ggplot2, knitr, testthat, roxygen2, markdown,
magrittr, kableExtra, rmarkdown
devtools, ggplot2, knitr, testthat (>= 3.0.0), roxygen2,
markdown, magrittr, kableExtra, rmarkdown, covr, ggrepel
testthat, knitr, rmarkdown, quantmod, covr
lattice, RColorBrewer, rgdal, rgeos (>= 0.1-5)
lattice, RColorBrewer, rgdal, rgeos (>= 0.1-8)
lattice, RColorBrewer, rgdal (>= 0.8-7), rgeos (>= 0.1-8),
gstat
RColorBrewer, rgdal (>= 0.8-7), rgeos (>= 0.2-20), gstat
lattice, RColorBrewer, rgdal (>= 0.7-21), rgeos (>= 0.1-8)
lattice, RColorBrewer, rgdal (>= 0.8-7), rgeos (>= 0.1-8)
RColorBrewer, rgdal (>= 0.8-7), rgeos (>= 0.3-12), gstat
RColorBrewer, rgdal (>= 0.8-7), rgeos (>= 0.3-13), gstat
RColorBrewer, rgdal (>= 0.8-7), rgeos (>= 0.3-13), gstat,
maptools, deldir
RColorBrewer, rgdal (>= 1.2-3), rgeos (>= 0.3-13), gstat,
maptools, deldir
RColorBrewer, rgdal (>= 1.2-3), rgeos (>= 0.3-13), gstat,
maptools, deldir, knitr, rmarkdown
RColorBrewer, rgdal (>= 1.2-3), rgeos (>= 0.3-13), gstat,
maptools, deldir, knitr, rmarkdown, sf
coda, classInt, knitr, rmarkdown, womblR (>= 1.0.3)
foreign, maptools, rgdal, sf, sp, spDataLarge (>= 0.2.3.0),
spdep
foreign, maptools, rgdal, sf, sp, spDataLarge (>= 0.2.3.1),
spdep
foreign, maptools, raster, rgdal, sf, sp, spDataLarge (>=
0.2.3.1), spdep
foreign, maptools, raster, rgdal, sf, sp, spDataLarge (>=
0.2.5.1), spdep
foreign, maptools, raster, rgdal, sf, sp, spDataLarge (>=
0.2.6.0), spdep
foreign, maptools, raster, rgdal, sf, sp, spDataLarge (>=
0.2.6.1), spdep
foreign, maptools, raster, rgdal, sf, sp, spDataLarge (>=
0.2.7.0), spdep
foreign, maptools, raster, rgdal, sf, sp, spDataLarge (>=
0.2.7.1), spdep
foreign, maptools, raster, rgdal, sf, sp, spDataLarge (>=
0.2.7.3), spdep
foreign, maptools, raster, rgdal, sf, sp, spDataLarge (>=
0.3.0), spdep
foreign, maptools, rgdal, sf (>= 0.9-1), spDataLarge (>=
0.4.0), spdep, spatialreg
foreign, maptools, raster, rgdal, sf, sp, spDataLarge (>=
0.3.0), spdep, spatialreg
foreign, maptools, rgdal, sf, spDataLarge (>= 0.3.0), spdep,
spatialreg
foreign, sf (>= 0.9-1), spDataLarge (>= 0.4.0), spdep,
spatialreg,
caret (>= 6.0), MASS (>= 7.3), knitr, rmarkdown
tidytext, dplyr, lubridate, readr, stringr, magrittr,
tidyselect
maps, testthat, lme4, rsae, ff, rasterVis, rgdal, rcdd
maps, testthat, lme4, rsae, ff, rasterVis, rgdal
maps, testthat, lme4, rsae, ff, rcdd, e1071, foreach
maps, testthat, lme4, rsae, ff, rcdd, e1071, foreach,
pedigreemm
maps, testthat, lme4, rsae, rcdd, e1071, foreach, pedigreemm,
minqa
maps, testthat, lme4, rsae, rcdd, e1071, pedigreemm, minqa
maps, testthat, lme4, rsae, rcdd, pedigreemm, minqa,
lpSolveAPI (>= 5.5.0.14), foreach, multilevel, Infusion,
IsoriX, blackbox
maps, testthat, lme4, rsae, rcdd, pedigreemm, minqa,
lpSolveAPI (>= 5.5.0.14), foreach, multilevel, Infusion (>=
1.3.0), IsoriX (>= 0.8.1), blackbox (>= 1.1.25), gmp
maps, testthat, lme4, rsae, rcdd, pedigreemm, lpSolveAPI (>=
5.5.2.0.17.6), foreach, multilevel, Infusion (>= 1.3.0), IsoriX
(>= 0.8.1), blackbox (>= 1.1.25)
maps, testthat, lme4, rsae, rcdd, pedigreemm, lpSolveAPI (>=
5.5.2.0.17.6), foreach, multilevel, Infusion (>= 1.3.0), IsoriX
(>= 0.8.1), blackbox (>= 1.1.25), RSpectra
maps, testthat, lme4, rsae, rcdd, pedigreemm, foreach,
future, future.apply, multilevel, Infusion (>= 1.3.0), IsoriX
(>= 0.8.1), blackbox (>= 1.1.25), RSpectra, ROI.plugin.glpk,
memoise (>= 2.0.0), agridat
maps, testthat, lme4, rsae, rcdd, pedigreemm, foreach,
multilevel, Infusion (>= 1.3.0), IsoriX (>= 0.8.1), blackbox
(>= 1.1.25), RSpectra
maps, testthat, lme4, rsae, rcdd, pedigreemm, foreach,
multilevel, Infusion (>= 1.3.0), IsoriX (>= 0.8.1), blackbox
(>= 1.1.25), RSpectra, ROI.plugin.glpk
maps, testthat, lme4, rsae, rcdd, pedigreemm, foreach,
future, future.apply, multilevel, Infusion (>= 1.3.0), IsoriX
(>= 0.8.1), blackbox (>= 1.1.25), RSpectra, ROI.plugin.glpk
maps, testthat, lme4, rsae, rcdd, pedigreemm, foreach,
future, future.apply, multilevel, Infusion (>= 1.3.0), IsoriX
(>= 0.8.1), blackbox (>= 1.1.25), RSpectra, ROI.plugin.glpk,
memoise
maps, testthat, lme4, rsae, rcdd, pedigreemm, foreach,
future, future.apply, multilevel, Infusion (>= 1.3.0), IsoriX
(>= 0.8.1), blackbox (>= 1.1.25), RSpectra, ROI.plugin.glpk,
memoise (>= 2.0.0)
maps, testthat, lme4, lmerTest, rsae, rcdd, pedigreemm,
foreach, future, future.apply, multilevel, Infusion (>= 1.3.0),
IsoriX (>= 0.8.1), blackbox (>= 1.1.25), RSpectra,
ROI.plugin.glpk, memoise (>= 2.0.0), agridat
maps, testthat, lme4, rsae, rcdd, foreach, future,
future.apply, multilevel, Infusion (>= 1.3.0), IsoriX (>=
0.8.1), blackbox (>= 1.1.25), RSpectra, ROI.plugin.glpk,
memoise (>= 2.0.0), agridat
spacesXYZ, rgl, microbenchmark, knitr, rmarkdown
gstat, rgdal, maps, mapdata, maptools, adehabitat,
argosfilter, trip
gstat, rgdal, maps, mapdata, maptools, adehabitat, diveMove,
trip
gstat (>= 0.9-74), rgdal, maps, mapdata, maptools,
adehabitat, trip, diveMove, RColorBrewer
gstat (>= 0.9-74), rgdal, maps, mapdata, maptools,
adehabitat, trip, diveMove, RColorBrewer, plm
gstat (>= 0.9-74), rgdal, maps, mapdata, maptools,
adehabitat, trip, diveMove, RColorBrewer, plm, cshapes
gstat (>= 0.9-74), rgdal, maps, mapdata, maptools,
adehabitatLT, trip, diveMove, RColorBrewer, plm, cshapes
gstat (>= 0.9-74), rgdal, maps, mapdata, maptools,
adehabitatLT, trip, diveMove, RColorBrewer, plm, cshapes,
foreign
gstat (>= 0.9-74), rgdal, rgeos, maps, mapdata, maptools,
adehabitatLT, trip, diveMove, RColorBrewer, plm, cshapes,
foreign
gstat (>= 0.9-74), rgdal, rgeos, maps, mapdata, maptools,
adehabitatLT, trip, diveMove, RColorBrewer, plm, cshapes,
foreign, RPostgreSQL
rgdal, rgeos, raster, intervals, maps, mapdata, maptools,
gstat (>= 0.9-74), adehabitatLT, trip, diveMove, RColorBrewer,
plm, cshapes, foreign, RPostgreSQL
rgdal, rgeos, raster, intervals, maps, mapdata, maptools,
gstat (>= 0.9-74), adehabitatLT, diveMove, RColorBrewer, plm,
cshapes, foreign, RPostgreSQL
rgdal, rgeos, raster, intervals, maps, mapdata, maptools,
gstat (>= 0.9-74), adehabitatLT, diveMove, RColorBrewer, plm,
cshapes, foreign, RPostgreSQL, zoo
rgdal, rgeos, raster, intervals, maps, mapdata, maptools,
gstat (>= 1.0-16), adehabitatLT, diveMove, RColorBrewer, plm,
cshapes, foreign, RPostgreSQL, zoo
rgdal, rgeos, raster, maps, mapdata, maptools, gstat (>=
1.0-16), adehabitatLT, diveMove, RColorBrewer, plm, cshapes,
foreign, RPostgreSQL
adehabitatLT, cshapes, diveMove, foreign, gstat (>= 1.0-16),
maps, mapdata, maptools, plm, raster, RColorBrewer, rgdal,
RPostgreSQL
adehabitatLT, cshapes, diveMove, foreign, gstat (>= 1.0-16),
maps, mapdata, maptools, plm, raster, RColorBrewer, rgdal,
RPostgreSQL, knitr, googleVis
adehabitatLT, cshapes, diveMove, foreign, gstat (>= 1.0-16),
maps, mapdata, maptools, plm, raster, RColorBrewer, rgdal,
rgeos, RPostgreSQL, knitr, googleVis, ISOcodes
adehabitatLT, cshapes, diveMove, foreign, gstat (>= 1.0-16),
maps, mapdata, maptools, plm, raster, RColorBrewer, rgdal,
rgeos, RPostgreSQL, knitr, googleVis, ISOcodes, markdown
adehabitatLT, cshapes (>= 2.0), foreign, gstat (>= 1.0-16),
maps, mapdata, maptools, plm, raster, RColorBrewer, rgdal,
rgeos, RPostgreSQL, knitr, googleVis, ISOcodes, markdown, sf
adehabitatLT, cshapes (>= 2.0), foreign, gstat (>= 1.0-16),
maps, mapdata, maptools, plm, raster, RColorBrewer, rgdal,
rgeos, rmarkdown, RPostgreSQL, knitr, googleVis, ISOcodes,
markdown, sf
adehabitatLT, cshapes (>= 2.0), foreign, gstat (>= 1.0-16),
maps, mapdata, maptools, plm, raster, RColorBrewer, rgdal,
rgeos, rmarkdown, RPostgreSQL, knitr, googleVis, ISOcodes,
markdown, sf, sftime
testthat (>= 2.1.0), covr, knitr, rmarkdown, future, pkgload
knitr, quanteda, R.rsp, rmarkdown, spelling, testthat
dplyr, knitr, quanteda, R.rsp, rmarkdown, spelling, testthat,
tidytext, tibble
dplyr, knitr, lintr, quanteda, R.rsp, rmarkdown, spelling,
testthat, tidytext, tibble
spam64, fields, SparseM, Matrix, testthat, R.rsp, truncdist
spam64, fields, SparseM, Matrix, testthat, R.rsp, truncdist,
knitr, rmarkdown
fields, SparseM, Matrix, testthat, R.rsp, truncdist, knitr,
rmarkdown
spam64, fields, Matrix, testthat, R.rsp, truncdist, knitr,
rmarkdown
oro.nifti, MASS, fastICA, fields, mmand, ptw, tkrplot,
viridis, RNifti, RNiftyReg, neurobase, knitr, magrittr,
rmarkdown
oro.nifti, MASS, fastICA, fields, mmand, ptw, viridisLite,
viridis, RNifti, RNiftyReg, neurobase, knitr, rmarkdown,
testthat
neurobase, oro.nifti, knitr, rmarkdown, testthat
neurobase, oro.nifti, knitr, rmarkdown, testthat, doParallel
oro.nifti, MASS, fastICA, fields, mmand, ptw, tkrplot,
viridisLite, viridis, RNifti, RNiftyReg, neurobase, knitr,
magrittr, rmarkdown
oro.nifti, MASS, fastICA, fields, mmand, ptw, viridisLite,
viridis, RNifti, RNiftyReg, neurobase, knitr, magrittr,
rmarkdown
oro.nifti, MASS, fastICA, fields, mmand, ptw, viridisLite,
viridis, RNifti, RNiftyReg, neurobase, knitr, magrittr,
rmarkdown, testthat
viridisLite, shiny, miniUI, knitr, rmarkdown, testthat,
doParallel
viridisLite, shiny, miniUI, knitr, rmarkdown, testthat, ragg,
doParallel
viridisLite, shiny, miniUI, neurobase, oro.nifti, knitr,
rmarkdown, testthat, doParallel
ggplot2, janeaustenr, nycflights13, testthat, RCurl
ggplot2, janeaustenr, nycflights13, testthat, tibble, RCurl
ggplot2, glmnet, janeaustenr, Lahman, mlbench, nnet,
nycflights13, RCurl, reshape2, testthat, tibble
ggplot2, glmnet, janeaustenr, Lahman, mlbench, nnet,
nycflights13, RCurl, reshape2, testthat
broom, ggplot2, glmnet, janeaustenr, Lahman, mlbench, nnet,
nycflights13, R6, RCurl, reshape2, shiny (>= 1.0.1), testthat
broom, ggplot2, janeaustenr, Lahman, mlbench, nnet,
nycflights13, R6, RCurl, reshape2, shiny (>= 1.0.1), testthat
broom, foreach, ggplot2, iterators, janeaustenr, Lahman,
mlbench, nnet, nycflights13, R6, RCurl, reshape2, shiny (>=
1.0.1), testthat
arrow (>= 0.14.0), broom, diffobj, foreach, ggplot2,
iterators, janeaustenr, Lahman, mlbench, nnet, nycflights13,
R6, RCurl, reshape2, shiny (>= 1.0.1), stringr, testthat
arrow (>= 0.14.0), broom, diffobj, foreach, ggplot2,
iterators, janeaustenr, Lahman, mlbench, nnet, nycflights13,
R6, RCurl, reshape2, shiny (>= 1.0.1), testthat
arrow (>= 0.14.0), broom, diffobj, foreach, ggplot2,
iterators, janeaustenr, Lahman, mlbench, nnet, nycflights13,
R6, RCurl, reshape2, shiny (>= 1.0.1), parsnip, testthat
arrow (>= 0.17.0), broom, diffobj, foreach, ggplot2,
iterators, janeaustenr, Lahman, mlbench, nnet, nycflights13,
R6, RCurl, reshape2, shiny (>= 1.0.1), parsnip, testthat
broom, geojsonio, ggmap, maptools, osmdata, rgeos, tibble,
tidyverse, rgdal, testthat, ggplot2, knitr, rmarkdown, spelling
testthat, numDeriv, scales, knitr, xtable, dplyr
xts, knitr, rmarkdown, bookdown, prettydoc
bookdown, knitr, prettydoc, rmarkdown, R.rsp, xts
mvtnorm (>= 1.0.6), plyr, knitr, testthat, dplyr (>= 0.5.0),
scales, reshape2, trustOptim (>= 0.8.5), xtable (>= 1.8),
ggplot2 (>= 2.2.1), tidyr (>= 0.6.1)
dplyr (>= 1.0), tidyr (>= 1.1), ggplot2 (>= 3.3), forcats (>=
0.5), mvtnorm (>= 1.0.6) , knitr, bookdown, kableExtra,
testthat, scales, trustOptim (>= 0.8.5)
survival, knitr, rmarkdown, kableExtra, testthat, covr,
modeldata, MASS
knitr, rmarkdown, mvtnorm, igraph, graph, testthat
bnlearn, graph, igraph, network, testthat
bnlearn, graph, igraph, network, RCy3, testthat
testthat, MASS, covr, modeldata, spelling
testthat (>= 3.0.0), knitr, rmarkdown, markdown, glmnet
glmnet, knitr, markdown, rmarkdown, testthat (>= 3.0.0)
dplyr, glmnet, knitr, markdown, rmarkdown, splines, testthat
(>= 3.0.0)
testthat, doParallel (>= 1.0.11), parallel
testthat, doParallel (>= 1.0.11), parallel, doRNG
exactextractr, cluster, readr, RCurl, RANN, rms, yaImpute,
SpatialPack (>= 0.3), mgcv, EnvStats, maptools, GeNetIt, gstat,
RStoolbox
exactextractr, cluster, readr, RCurl, RANN, rms, yaImpute,
SpatialPack (>= 0.3), mgcv, EnvStats, maptools, GeNetIt, gstat,
RStoolbox, terra
exactextractr, cluster, readr, RCurl, RANN, rms, yaImpute,
SpatialPack (>= 0.3), mgcv, EnvStats, maptools, GeNetIt, gstat,
RStoolbox, terra, tabularaster, stringr
gstat, spatstat.data, methods, RStoolbox, units, sp, raster,
stringr
INLA, geoR, SDraw, testthat, tmap, R.rsp
parallel, RSpectra, sf, tmap, foreign, spam, knitr, lmtest,
sandwich
parallel, RSpectra, sf, tmap, foreign, spam, knitr, lmtest,
sandwich, rmarkdown
parallel, RSpectra, tmap, foreign, spam, knitr, lmtest,
sandwich, rmarkdown, igraph
automap, gstat, knitr, mgcv, rmarkdown, testthat, vroom
ggplot2, knitr, modeldata, rmarkdown, tidyr, testthat (>=
3.0.0), yardstick, covr
covr, gifski, knitr, lwgeom, modeldata, rmarkdown, testthat
(>= 3.0.0), tidyr, vdiffr, yardstick
covr, gifski, knitr, lwgeom, modeldata, rmarkdown, testthat
(>= 3.0.0), tidyr, vdiffr, whisker, withr, yardstick
moments, poweRlaw, testthat, knitr, covr
moments, poweRlaw, testthat, covr, acss, mgcv
moments, poweRlaw, reshape2, testthat, covr, acss, mgcv,
gstat, sp
moments, poweRlaw, reshape2, testthat, covr, acss, mgcv,
gstat, sp, raster
colourvalues, covr, geojsonsf, jsonify, jsonlite, knitr,
rmarkdown, sf, testthat
colourvalues, covr, geojsonsf, jsonify, sfheaders, knitr,
rmarkdown, testthat
testthat (>= 2.1.0), knitr, rmarkdown, asnipe
testthat (>= 2.1.0), knitr, rmarkdown, asnipe, markdown
gpclib, sm, maptools, rpanel, tkrplot, scatterplot3d
gpclib, sm, maptools, spatial, rpanel, tkrplot, scatterplot3d
gpclib, sm, maptools, spatial, rpanel, tkrplot,
scatterplot3d, RandomFields (>= 2.0)
gpclib, sm, maptools, locfit, spatial, rpanel, tkrplot,
scatterplot3d, RandomFields (>= 2.0)
gpclib, sm, maptools, gsl, locfit, spatial, rpanel, tkrplot,
scatterplot3d, RandomFields (>= 2.0)
gpclib, sm, maptools, gsl, locfit, tensor, spatial, rpanel,
tkrplot, scatterplot3d, RandomFields (>= 2.0.60)
sm, maptools, gsl, locfit, spatial, rpanel, tkrplot,
scatterplot3d, RandomFields (>= 2.0.60)
sm, maptools, gsl, locfit, spatial, rpanel, tkrplot,
scatterplot3d, RandomFields (>= 3.0.0)
sm, maptools, gsl, locfit, spatial, rpanel, tkrplot,
scatterplot3d, RandomFields (>= 3.0.0), Matrix
sm, maptools, gsl, locfit, spatial, rpanel, tkrplot,
RandomFields (>= 3.0.0)
sm, maptools, gsl, locfit, spatial, rpanel, tkrplot,
RandomFields (>= 3.1.24.1), RandomFieldsUtils(>= 0.3.3.1)
sm, maptools, gsl, locfit, spatial, rpanel, tkrplot,
RandomFields (>= 3.1.24.1), RandomFieldsUtils(>= 0.3.3.1),
fftwtools
sm, maptools, gsl, locfit, spatial, rpanel, tkrplot,
RandomFields (>= 3.1.24.1), RandomFieldsUtils(>= 0.3.3.1),
fftwtools (>= 0.9-8)
sm, maptools (>= 0.9-9), gsl, locfit, spatial, RandomFields
(>= 3.1.24.1), RandomFieldsUtils(>= 0.3.3.1), fftwtools (>=
0.9-8)
sm, maptools (>= 0.9-9), gsl, locfit, spatial, RandomFields
(>= 3.1.24.1), RandomFieldsUtils(>= 0.3.3.1), fftwtools (>=
0.9-8), spatstat.linnet
sm, maptools (>= 0.9-9), gsl, locfit, spatial, RandomFields
(>= 3.1.24.1), RandomFieldsUtils(>= 0.3.3.1), fftwtools (>=
0.9-8), spatstat.linnet (>= 2.0-0), spatstat (>= 2.0-0)
sm, maptools (>= 0.9-9), gsl, locfit, spatial, RandomFields
(>= 3.1.24.1), RandomFieldsUtils(>= 0.3.3.1), fftwtools (>=
0.9-8), nleqslv, spatstat.linnet (>= 2.0-0), spatstat (>=
2.0-0)
sm, maptools (>= 0.9-9), gsl, locfit, spatial, RandomFields
(>= 3.1.24.1), RandomFieldsUtils(>= 0.3.3.1), fftwtools (>=
0.9-8), nleqslv, spatstat.linnet (>= 2.0-0), spatstat (>=
2.3-3)
spatstat.geom, spatstat.random, spatstat.explore,
spatstat.model, spatstat.linnet
sm, maptools (>= 0.9-9), gsl, locfit, spatial, fftwtools (>=
0.9-8), spatstat.linnet (>= 3.0), spatstat.model (>= 3.0),
spatstat (>= 3.0)
spatstat.core, spatstat.linnet, maptools (>= 0.9-9), spatial,
fftwtools (>= 0.9-8)
spatstat.core, spatstat.linnet, maptools (>= 0.9-9), spatial,
fftwtools (>= 0.9-8), spatstat (>= 2.0)
spatstat.core, spatstat.linnet, maptools (>= 0.9-9), spatial,
fftwtools (>= 0.9-8), spatstat (>= 2.0-0)
spatstat.core, spatstat.random, spatstat.linnet, maptools (>=
0.9-9), spatial, fftwtools (>= 0.9-8), spatstat (>= 2.0-0)
spatstat.random, spatstat.explore, spatstat.model,
spatstat.linnet, maptools (>= 0.9-9), spatial, fftwtools (>=
0.9-8), spatstat (>= 2.0-0)
sm, maptools (>= 0.9-9), gsl, locfit, spatial, RandomFields
(>= 3.1.24.1), RandomFieldsUtils(>= 0.3.3.1), fftwtools (>=
0.9-8), nleqslv, glmnet, spatstat.linnet (>= 3.0), spatstat (>=
3.0)
spatial, RandomFields (>= 3.1.24.1), RandomFieldsUtils(>=
0.3.3.1), spatstat.linnet (>= 2.0-0), spatstat.core (>= 2.3-2),
spatstat (>= 2.0-0)
spatial, RandomFields (>= 3.1.24.1), RandomFieldsUtils(>=
0.3.3.1), spatstat.linnet (>= 2.0-0), spatstat.core (>= 2.4-0),
spatstat (>= 2.3-3)
spatial, RandomFields (>= 3.1.24.1), RandomFieldsUtils (>=
0.3.3.1), spatstat.linnet (>= 2.0-0), spatstat.explore,
spatstat.model, spatstat (>= 2.3-3)
testthat, maptools, raster, rmarkdown, scales
testthat, ggplot2, maptools, raster, rmarkdown, scales,
knitr, covr, broom
testthat, ggplot2, maptools, raster, rmarkdown, scales,
knitr, covr, broom, ggalt, ggpolypath, maps, trip
testthat, ggplot2, maptools, raster, rmarkdown, knitr, covr,
broom, ggpolypath, maps, trip, viridis
testthat, ggplot2, maptools, raster, rmarkdown, knitr, covr,
broom, ggpolypath, maps, sf, trip, viridis
testthat, ggplot2, maptools, raster, sf, rmarkdown, knitr,
covr, trip, viridis
formatR, knitr (>= 1.8.0), ggplot2, reshape2
grid, gstat, rgdal, rgl, rglwidget, RUnit, knitr
snow, rlecuyer, spam(>= 0.13-1), RANN, RColorBrewer, lattice
parallel, spam(>= 0.13-1), RANN, RColorBrewer, lattice
parallel, spam(>= 0.13-1), RANN, RColorBrewer, lattice,
xtable
parallel, spam(>= 0.13-1), RANN, RColorBrewer, lattice,
xtable, boot, maptools (>= 0.5-4), foreign
parallel, spam(>= 0.13-1), RANN, RColorBrewer, lattice,
xtable, maptools (>= 0.5-4), foreign
spam(>= 0.13-1), RANN, RColorBrewer, lattice, xtable,
maptools (>= 0.5-4), foreign
parallel, spam(>= 0.13-1), RANN, RColorBrewer, lattice,
xtable, maptools (>= 0.5-4), foreign, igraph, knitr
parallel, spam(>= 0.13-1), RANN, rgeos, RColorBrewer,
lattice, xtable, maptools (>= 0.5-4), foreign, igraph, knitr
sf, parallel, spam(>= 0.13-1), RANN, rgeos, RColorBrewer,
lattice, xtable, maptools (>= 0.5-4), foreign, igraph, knitr,
rgdal, classInt
sf, parallel, spam(>= 2.1-0), RANN, rgeos, RColorBrewer,
lattice, xtable, maptools (>= 0.5-4), foreign, igraph, knitr,
rgdal, classInt
parallel, spam (>= 2.1-0), RANN, rgeos, RColorBrewer,
lattice, xtable, maptools (>= 0.5-4), foreign, igraph,
RSpectra, knitr, rgdal, classInt, tmap
spatialreg (>= 1.1-1), parallel, dbscan, rgeos, RColorBrewer,
lattice, xtable, maptools (>= 0.5-4), foreign, igraph,
RSpectra, knitr, rgdal, classInt, tmap, spam, ggplot2,
rmarkdown, tinytest
spatialreg (>= 1.1-1), parallel, dbscan, rgeos, RColorBrewer,
lattice, xtable, maptools (>= 0.5-4), foreign, igraph,
RSpectra, knitr, rgdal, classInt, tmap, spam, ggplot2,
rmarkdown, tinytest, rgeoda
spatialreg (>= 1.1-1), parallel, RANN, rgeos, RColorBrewer,
lattice, xtable, maptools (>= 0.5-4), foreign, igraph,
RSpectra, knitr, rgdal, classInt, tmap, spam
spatialreg (>= 1.1-1), parallel, RANN, rgeos, RColorBrewer,
lattice, xtable, maptools (>= 0.5-4), foreign, igraph,
RSpectra, knitr, rgdal, classInt, tmap, spam, ggplot2,
rmarkdown
spatialreg (>= 1.1-1), parallel, dbscan, rgeos, RColorBrewer,
lattice, xtable, maptools (>= 0.5-4), foreign, igraph,
RSpectra, knitr, rgdal, classInt, tmap, spam, ggplot2,
rmarkdown
spatialreg (>= 1.2-1), Matrix, parallel, dbscan, rgeos,
RColorBrewer, lattice, xtable, maptools (>= 0.5-4), foreign,
igraph, RSpectra, knitr, rgdal, classInt, tmap, spam, ggplot2,
rmarkdown, tinytest, rgeoda
spatialreg (>= 1.2-1), Matrix, parallel, dbscan,
RColorBrewer, lattice, xtable, foreign, igraph, RSpectra,
knitr, classInt, tmap, spam, ggplot2, rmarkdown, tinytest,
rgeoda
testthat, maptools, raster, rmarkdown, knitr, covr
testthat, maptools, raster, rmarkdown, knitr, covr, spelling
datasets, knitr, rmarkdown, grid, gridBase
datasets, speaq, knitr, rmarkdown, grid, gridExtra, gridBase,
ggplot2
imager, tidyverse, rgl, fftw, mrbsizeR, knitr, rmarkdown
ggdendro, reticulate, qdap, scatterplot3d, MAIT, xcms,
KEGGgraph, KEGGREST, rcytoscapejs, rgl, grid, curl, RCurl
ggdendro, reticulate, qdap, scatterplot3d, MAIT, xcms,
KEGGgraph, KEGGREST, rcytoscapejs, rgl, grid, curl, RCurl,
pins, knitr, rmarkdown
ggdendro, reticulate, qdap, qpdf, scatterplot3d, MAIT, xcms,
KEGGgraph, KEGGREST, rcytoscapejs, rgl, grid, curl, RCurl,
pins, knitr, rmarkdown
knitr, testthat, tidyverse, performance, progress, rmarkdown
caret, pls, RColorBrewer, knitr, rmarkdown, dplyr
calendar, calendR, httptest, knitr, lubridate, lutz, maps,
rmarkdown
doParallel (>= 1.0.15), knitr, qs (>= 0.24.1), rmarkdown,
testthat (>= 3.0.3)
bookdown, knitr, prettydoc, rmarkdown, R.rsp, testthat,
patrick, corrplot, igraph, kernlab, pals, clusterSim, viridis,
quadprog, matrixcalc, CVXR
bookdown, knitr, prettydoc, rmarkdown, R.rsp, testthat,
patrick, corrplot, igraph, kernlab, pals, clusterSim, viridis,
quadprog, matrixcalc
CVXR, bookdown, knitr, prettydoc, rmarkdown, R.rsp, testthat,
patrick, corrplot, igraph, kernlab, pals, clusterSim, viridis,
quadprog, matrixcalc
dplyr, testthat, knitr, rmarkdown, gdm, covr
dplyr, testthat (>= 3.0.2), knitr, rmarkdown, covr,
RcppProgress
covr, tinytex, knitr (>= 1.30), rmarkdown (>= 2.5), testthat
(>= 3.0.0)
lattice, RColorBrewer, rgdal, SDMTools, foreach
ipred, nnet, RSAGA, knitr, testthat, pacman
ipred, nnet, RSAGA, knitr, testthat, pacman, rmarkdown
knitr, MASS, nnet, parallel, ranger, rmarkdown, rpart,
testthat
knitr, MASS, nnet, parallel, ranger, rmarkdown, rpart, sp,
testthat
testthat, knitr, rmarkdown, doParallel, foreach, stringdist,
ggmap, rgeos, Rmpi, mipfp, quadprog, data.table, rgdal,
ggplot2, reshape2, devtools, parallel
covr, knitr, sf, sp, spdep, tinytest, rmarkdown
spdep, parallel, snow, maptools (>= 0.7-32)
spdep, parallel, maptools (>= 0.7-32), rgdal
CompQuadForm, dgof, goftest, knitr, markdown, mvtnorm,
numDeriv, progress, progressr, rmarkdown, scatterplot3d,
testthat, viridisLite
mboost, mlbench, gtable, knitr, rmarkdown
knitr, rmarkdown, testthat, PresenceAbsence, sp, covr
minerva, binostics, mbgraphic, testthat, purrr
gganimate, gifski, knitr, png, rmarkdown, RColorBrewer
rmarkdown, knitr, testthat, covr, RColorBrewer, dplyr, GGally
rmarkdown, RColorBrewer, htmlwidgets, knitr, testthat, covr,
dplyr, GGally
rmarkdown, htmlwidgets, knitr, testthat, covr, GGally,
spelling
dplyr, GGally, rmarkdown, htmlwidgets, knitr, testthat, covr,
spelling
MASS, hexbin, htmlwidgets, gifski, png, dplyr, GGally,
rmarkdown, knitr, testthat, lifecycle, covr, spelling
knitr, rmarkdown, grImport, grImport2, jpeg, png, tiff, ape,
cranlogs, cowplot, dendextend, bezier
knitr, rmarkdown, grImport, grImport2, jpeg, png, tiff, ape,
cranlogs, cowplot, dendextend, bezier, magick
ComplexHeatmap, knitr, rmarkdown, grImport, grImport2, jpeg,
png, tiff, ape, cranlogs, cowplot, dendextend, bezier, magick
testthat, knitr, rmarkdown, pkgdown, covr
testthat (>= 3.0.0), rmarkdown, ggborderline
testthat, tibble, jpeg, png, covr, knitr, rmarkdown
knitr, rmarkdown, ranger, testthat (>= 3.0.0)
testthat, knitr, rmarkdown, tools, ggplot2
knitr, rmarkdown, kirby21.t1 (>= 1.5), kirby21.fmri (>= 1.5)
knitr, rmarkdown, kirby21.t1 (>= 1.5), kirby21.fmri (>= 1.5),
httr, scales
knitr, rmarkdown, kirby21.t1 (>= 1.7), kirby21.fmri (>= 1.7),
scales, httr
rmarkdown, knitr, testthat (>= 3.0.0), ggplot2, ranger
testthat, knitr, taxize (>= 0.7.9), covr
roxygen2 (>= 6.0.1), testthat, knitr, taxize (>= 0.8.4)
roxygen2 (>= 6.1.1), testthat, knitr, taxize (>= 0.8.4)
roxygen2 (>= 6.1.1), testthat, knitr, taxize (>= 0.8.4), vcr
testthat, knitr, rmarkdown, taxize (>= 0.8.4), vcr
roxygen2, testthat, knitr, taxize, maptools
knitr, rmarkdown, testthat, magrittr, dplyr
dplyr, knitr, lobstr, magrittr, pkgdown, rmarkdown, spelling,
testthat
testthat (>= 3.0.0), vdiffr (>= 0.3.3), roxygen2
data.table, gganimate, testthat (>= 3.0.0), roxygen2, knitr,
rmarkdown, curl
data.table, gganimate, testthat (>= 3.0.0), roxygen2, knitr,
rmarkdown, curl, gifski
sf (>= 0.7-3), testthat (>= 3.0.0), covr, knitr, rmarkdown
sf (>= 0.7-3), testthat (>= 3.0.0), covr, knitr, rmarkdown,
markdown
ape, knitr, rmarkdown, testthat (>= 3.0.0), covr
testthat, knitr, ggplot2, glue, rmarkdown
dplyr, fs, gganimate, ggraph, gifski, knitr, rmarkdown,
testthat (>= 3.0.0)
ff (>= 2.1-1), randomForest, RankProd, cluster, RUnit,
multtest, IRanges
ff (>= 2.1-1), randomForest, RankProd, cluster, multtest,
IRanges, RUnit
ff (>= 2.1-1), randomForest, RankProd, cluster, multtest,
IRanges, RUnit, Matrix, SparseM, slam
cluster, stringdist, RUnit, Matrix, SparseM, multtest,
Biostrings, ShortRead, golubEsets, RankProd
knitr, rmarkdown, testthat (>= 3.0.0), testthis, dplyr,
effsize
knitr, devtools, roxygen2, testthat, KMsurv
knitr, testthat, rmarkdown, lwgeom (>= 0.2-1)
gstat, rmarkdown, knitr, testthat, prettydoc, rgeos
rmarkdown, knitr, testthat, prettydoc, rgeos, tibble, gstat
dplyr, GGally, gridExtra, knitr, readr, sp
dplyr, GGally, gridExtra, knitr, png, readr, sp, testthat
dplyr, GGally, gridExtra, knitr, png, readr, testthat
RH2, RMySQL, RPostgreSQL, svUnit, tcltk, MASS
RSQLite, RSQLite.extfuns, RH2, RMySQL, RpgSQL, RPostgreSQL,
svUnit, tcltk
RH2, RMySQL, RpgSQL, RPostgreSQL, svUnit, tcltk, MASS
tcltk, RPostgreSQL, RODBC, RMySQL, RSQLite, sqldf, xtable
covr, gghighlight, testthat (>= 3.0.0), vdiffr, withr
ggplot2, knitr, Matrix, rmarkdown, pander, survival, testthat
ggplot2, knitr, Matrix, rmarkdown, pander, RSQLite,
MonetDBLite, survival, testthat
dbplyr, ggplot2, knitr, Matrix, rmarkdown, pander, RSQLite,
MonetDBLite, survival, testthat
convey, dbplyr, ggplot2, knitr, Matrix, rmarkdown, pander,
RSQLite, MonetDBLite, survival, testthat, vardpoor
convey, DBI, dbplyr, ggplot2, knitr, laeken, Matrix,
rmarkdown, pander, RSQLite, survival, testthat
convey, DBI, dbplyr, ggplot2, knitr, Matrix, rmarkdown,
pander, RSQLite, MonetDBLite, survival, testthat, vardpoor
convey, DBI, dbplyr, ggplot2, knitr, Matrix, rmarkdown,
pander, RSQLite, survival, testthat, vardpoor
convey, DBI, dbplyr, ggplot2, knitr, laeken, Matrix,
rmarkdown (>= 2.2.2), pander, RSQLite, survival, testthat
caret, e1071, C50, kernlab, testthat, timeDate, stringi,
R.rsp
covr, knitr, rmarkdown, testthat, tibble, tidyr, readr,
purrr, dplyr
checkr, covr, knitr, rmarkdown, testthat, readr, purrr,
tidyr, dplyr, R.rsp, mle.tools, reshape2
covr, knitr, rmarkdown, testthat, readr, rlang, purrr, tidyr,
dplyr, R.rsp, mle.tools, reshape2
covr, dplyr, fitdistrplus, future, glue, grDevices, knitr,
magrittr, mle.tools, R.rsp, readr, reshape2, rlang, rmarkdown,
testthat, tidyr, tidyverse, withr
knitr, rmarkdown, spelling, sys, testthat, mongolite
httptest, httpuv, rmarkdown, testthat (>= 2.1.0)
httptest, httpuv, rmarkdown, testthat (>= 2.1.0), withr
testthat (>= 3.0.0), covr, ggplot2, ggforce, lwgeom, tweedie,
sfdct, knitr, rmarkdown
testthat, covr, knitr, rmarkdown, dplyr, spelling, utf8
testthat, demography, knitr, rmarkdown, doParallel, doMC
testthat, demography, knitr, rmarkdown, doParallel, doMC,
seasonal
testthat, demography, knitr, rmarkdown, doParallel, seasonal,
rgl
plotly, xlsx, knitr, kableExtra, rmarkdown, knitcitations
xlsx, knitr, kableExtra, rmarkdown, knitcitations
plotly, xlsx, knitr, kableExtra, rmarkdown
plotly, xlsx, knitr, kableExtra, askpass(>= 1.1), httr(>=
1.4.2), rmarkdown
rmarkdown, knitr, testthat (>= 3.0.0), markdown
rmarkdown, testthat (>= 3.0.0), markdown
utils, Formula, nnet, rpart, knitr, evtree
utils, Formula, nnet, rpart, evtree, rchallenge, knitr,
rmarkdown
cowplot (>= 0.9.2), ggdendro (>= 0.1-20), ggplot2 (>= 3.0.0),
igraph (>= 1.2.1), knitr, mlbench, rmarkdown, rpart, testthat
(>= 2.0.0)
glmnet, lars, mboost (> 2.3-0), gamboostLSS (>= 1.2-0), QUIC,
TH.data, hdi, testthat, knitr, rmarkdown, igraph, huge
glmnet, lars, mboost (> 2.3-0), gamboostLSS (>= 1.2-0),
TH.data, hdi, testthat, knitr, rmarkdown
testthat, covr, kernlab, knitr, modeldata, rmarkdown,
palmerpenguins, ranger, nnet, kknn
testthat, covr, kernlab, knitr, modeldata, rmarkdown, ranger,
nnet, kknn
testthat (>= 3.0.0), covr, kknn, ranger, knitr, modeldata,
rmarkdown, nnet, kernlab, mockr, h2o, SuperLearner
testthat, knitr, rmarkdown, afex (>= 0.16-1), lsmeans (>=
2.25-5), lmerTest (>= 2.0-33)
testthat, knitr, rmarkdown, afex (>= 0.17-8), lsmeans (>=
2.25-5), lmerTest (>= 2.0-33)
afex, emmeans, knitr, lmerTest, rmarkdown, testthat
knitr, rmarkdown, covr, testthat, spelling
lwgeom, covr, ggplot2, ggthemes, gstat, dplyr (>= 0.7-0),
knitr, maps, plm, rmarkdown, sp, zoo, xts, spacetime, raster,
testthat, viridis
covr, dplyr (>= 0.7-0), ggplot2, ggthemes, gstat, knitr,
lwgeom, maps, pbapply, plm, raster, rmarkdown, sp, spacetime,
testthat, viridis, zoo, xts, starsdata
PCICt, RNetCDF (>= 1.8-2), covr, dplyr (>= 0.7-0), ggforce,
ggplot2, ggthemes, gstat, httr, jsonlite, knitr, lwgeom, maps,
ncmeta (>= 0.0.3), pbapply, plm, raster, rmarkdown, sp,
spacetime, testthat, viridis, zoo, xts, starsdata
PCICt, RNetCDF (>= 1.8-2), covr, dplyr (>= 0.7-0),
future.apply, ggforce, ggplot2, ggthemes, gstat, httr,
jsonlite, knitr, lwgeom, maps, ncmeta (>= 0.0.3), pbapply, plm,
raster, rmarkdown, sp, spacetime, testthat, viridis, xts, zoo,
starsdata
PCICt, RNetCDF (>= 1.8-2), covr, digest, dplyr (>= 0.7-0),
future.apply, ggforce, ggplot2, ggthemes, gstat, httr,
jsonlite, knitr, maps, ncdfgeom, ncmeta (>= 0.0.3), pbapply,
plm, raster, rmarkdown, sp, spacetime, starsdata, testthat,
tidync, viridis, xts, zoo
PCICt, RNetCDF (>= 1.8-2), covr, digest, dplyr (>= 0.7-0),
cubelyr, future.apply, ggforce, ggplot2, ggthemes, gstat, httr,
jsonlite, knitr, maps, ncdfgeom, ncmeta (>= 0.0.3), pbapply,
plm, raster, rmarkdown, sp, spacetime, spatstat, starsdata,
testthat, viridis, xts, zoo
PCICt, RNetCDF (>= 1.8-2), covr, cubelyr, digest, dplyr (>=
0.7-0), exactextractr, future.apply, ggforce, ggplot2,
ggthemes, gstat, httr, jsonlite, knitr, maps, ncdfgeom, ncmeta
(>= 0.0.3), pbapply, plm, raster, rmarkdown, sp, spacetime,
spatstat, starsdata, testthat, viridis, xts, zoo
PCICt, RNetCDF (>= 1.8-2), covr, cubelyr, digest, dplyr (>=
0.7-0), exactextractr, future.apply, ggforce, ggplot2,
ggthemes, gstat, httr, jsonlite, knitr, maps, ncdfgeom, ncmeta
(>= 0.0.3), pbapply, plm, raster, rmarkdown, s2 (>= 1.0.0), sp,
spacetime, spatstat, starsdata, testthat, viridis, xts, zoo
PCICt, RNetCDF (>= 1.8-2), clue, covr, cubelyr, digest, dplyr
(>= 0.7-0), exactextractr, future.apply, ggforce, ggplot2,
ggthemes, gstat, httr, jsonlite, knitr, maps, mapdata,
ncdfgeom, ncmeta (>= 0.0.3), pbapply, plm, randomForest,
raster, rgdal, rmarkdown, s2 (>= 1.0.0), sp, spacetime,
spatstat, starsdata, terra, testthat, viridis, xts, zoo
PCICt, RNetCDF (>= 1.8-2), clue, covr, cubelyr, digest, dplyr
(>= 0.7-0), exactextractr, future.apply, ggforce, ggplot2,
ggthemes, gstat, httr, jsonlite, knitr, maps, mapdata,
ncdfgeom, ncmeta (>= 0.0.3), pbapply, plm, randomForest,
raster, rgdal, rmarkdown, s2 (>= 1.0.0), sp, spacetime,
spatstat (>= 2.0-1), spatstat.geom, starsdata, terra, testthat,
viridis, xts, zoo
PCICt, RNetCDF (>= 1.8-2), clue, covr, cubelyr, digest, dplyr
(>= 0.7-0), exactextractr, future.apply, ggforce, ggplot2,
ggthemes, gstat, httr, jsonlite, knitr, maps, mapdata,
ncdfgeom, ncmeta (>= 0.0.3), pbapply, plm, randomForest,
raster, rgdal, rmarkdown, s2 (>= 1.0.0), sp, spacetime,
spatstat (>= 2.0-1), spatstat.geom, starsdata, terra, testthat,
tidyr, viridis, xts, zoo
PCICt, RNetCDF (>= 1.8-2), clue, covr, cubelyr, digest, dplyr
(>= 0.7-0), exactextractr, future.apply, ggforce, ggplot2,
ggthemes, gstat, httr, jsonlite, knitr, maps, mapdata,
ncdfgeom, ncmeta (>= 0.0.3), pbapply, plm, randomForest,
raster, rgdal, rmarkdown, sp, spacetime, spatstat (>= 2.0-1),
spatstat.geom, starsdata, terra, testthat, tidyr, viridis, xts,
zoo
PCICt, RNetCDF (>= 1.8-2), clue, covr, cubelyr, digest, dplyr
(>= 0.7-0), exactextractr, future.apply, ggforce, ggplot2,
ggthemes, gstat, httr, jsonlite, knitr, maps, mapdata,
ncdfgeom, ncmeta (>= 0.0.3), pbapply, plm, randomForest,
raster, rgdal, rmarkdown, sp, spacetime, spatstat (>= 2.0-1),
spatstat.geom, starsdata, terra (>= 1.4-22), testthat, tidyr,
viridis, xts, zoo
PCICt, RNetCDF (>= 1.8-2), clue, covr, cubelyr, digest, dplyr
(>= 0.7-0), exactextractr, FNN, future.apply, ggforce, ggplot2,
ggthemes, gstat, httr, jsonlite, knitr, maps, mapdata,
ncdfgeom, ncmeta (>= 0.0.3), pbapply, plm, randomForest,
raster, rgdal, rmarkdown, sp, spacetime, spatstat (>= 2.0-1),
spatstat.geom, starsdata, terra (>= 1.4-22), testthat, tidyr,
viridis, xts, zoo
Cairo, PCICt, RNetCDF (>= 1.8-2), clue, covr, cubelyr,
digest, dplyr (>= 0.7-0), exactextractr, FNN, future.apply,
ggforce, ggplot2, ggthemes, gstat, httr, jsonlite, knitr, maps,
mapdata, ncdfgeom, ncmeta (>= 0.0.3), pbapply, plm,
randomForest, raster, rgdal, rmarkdown, sp, spacetime, spatstat
(>= 2.0-1), spatstat.geom, starsdata, terra (>= 1.4-22),
testthat, tidyr, viridis, xts, zoo
knitr, rmarkdown, leaflet.extras, webshot, mapview, callr,
magick, shiny, dplyr, magrittr, abind, testthat (>= 3.0.0),
withr
testthat (>= 3.0.0), EnvStats, BSDA, purrr
car, pdist, testthat, impute, gWidgetsRGtk2
testthat, ggplot2, stringr, knitr, rmarkdown
testthat, ggplot2, stringr, knitr, rmarkdown, covr
testthat (>= 2.1.0), ggplot2, stringr, knitr, rmarkdown,
covr, pkgdown, DT
knitr, rmarkdown, tidyverse, leaflet, covr
datasets, graphics, knitr, numDeriv (>= 2016.8-1.1), optimx
(>= 2020-4.2), rmarkdown, YieldCurve (>= 4.1)
datasets, graphics, knitr, numDeriv (>= 2016.8-1.1), optimx
(>= 2020-4.2), rmarkdown
knitr, rmarkdown, officer, rvg, tinytest
knitr, rmarkdown, officer, tinytest, snpStats
asreml (>= 4.0), knitr, rmarkdown, tinytest (>= 1.2.4)
asreml(>= 3.0), rmarkdown, testthat, tibble
rockchalk, xtable, lavaan, utils, psych, pander
dplyr, testthat, mosaicData, knitr, rmarkdown
networksis (>= 2.1.1), degreenet (>= 1.2), relevent (>= 1.0)
relevent (>= 1.0), latentnet (>= 2.4-2), ergm.userterms (>=
3.0-1)
networksis (>= 2.1-1), degreenet (>= 1.2), relevent (>= 1.0)
knitr, rmarkdown, dplyr, forcats, ggplot2
curl (>= 3.2), dplyr, ggplot2, knitr, lubridate, rmarkdown,
stringr, testthat, tidyr, pkgdown
curl (>= 3.2), dplyr, ggplot2, knitr, lubridate, rmarkdown,
stringr, testthat, tidyr, pkgdown, kableExtra, leaflet
curl (>= 3.2), dplyr, ggplot2, knitr, lubridate, rmarkdown,
stringr, testthat, tidyr, pkgdown, kableExtra, leaflet,
geojsonsf, htmltools
curl (>= 3.2), dplyr, ggplot2, knitr, lubridate, rmarkdown,
stringr, testthat, tidyr, pkgdown, kableExtra, leaflet,
geojsonsf, htmltools, tmap
curl (>= 3.2), dplyr, ggplot2, knitr, lubridate, rmarkdown,
stringr, testthat (>= 2.1.0), tidyr, pkgdown, kableExtra,
leaflet, geojsonsf, htmltools, tmap, jsonlite, pct, spatstat,
osmdata
curl (>= 3.2), dplyr, ggplot2, knitr, lubridate, rmarkdown,
stringr, testthat (>= 2.1.0), tidyr, pkgdown, kableExtra,
leaflet, geojsonsf, htmltools, tmap, jsonlite, pct,
spatstat.core, spatstat.geom, spatstat, osmdata, covr
curl (>= 3.2), dplyr, ggplot2, knitr, lubridate, rmarkdown,
stringr, testthat (>= 2.1.0), tidyr, pkgdown, kableExtra,
leaflet, geojsonsf, htmltools, tmap, jsonlite, pct,
spatstat.geom, osmdata, covr
ggplot2, knitr, purrr, rmarkdown, spelling, testthat
ggplot2, knitr, rmarkdown, spelling, testthat, utils
ggplot2, knitr, purrr, rmarkdown, spelling, testthat, utils
ggplot2, knitr, metaBMA, metafor, metaplus, purrr, rmarkdown,
spelling, testthat, utils
afex, ggplot2, knitr, metaBMA, metafor, metaplus, purrr,
rmarkdown, spelling, testthat, utils
afex, ggplot2, knitr, metaBMA, metafor, metaplus, rmarkdown,
spelling, testthat, utils
afex (>= 1.0-1), ggplot2, knitr, metaBMA, metafor, metaplus,
purrr, rmarkdown, spelling, survival, testthat, utils
afex, ggplot2, knitr, metaBMA, metafor, metaplus, purrr,
rmarkdown, spelling, survival, testthat, utils
afex, ggplot2, knitr, metaBMA, metafor, metaplus, PMCMRplus,
purrr, rmarkdown, spelling, survival, testthat (>= 3.1.4),
utils
afex, ggplot2, knitr, metaBMA, metafor, metaplus, PMCMRplus,
purrr, rmarkdown, spelling, survival, testthat (>= 3.1.4),
utils, withr
afex (>= 1.2-0), ggplot2, knitr, metaBMA, metafor, metaplus,
PMCMRplus, purrr, rmarkdown, spelling, survival, testthat (>=
3.1.5), utils, withr
testthat, dplyr, knitr, rmarkdown, lavaan, visreg, lm.beta
INLA (>= 21.08.31), testthat (>= 3.0.0), rmarkdown, maptools,
parallel, spatstat.utils, spatstat.geom, rgdal, hawkesbow
covr, ggplot2, jsonlite, knitr, rmarkdown, SimMultiCorrData,
testthat (>= 3.0.0)
covr, devtools, lintr, pkgdown, rhub, roxygen2, spelling,
testthat
testthat, fields, knitr, rmarkdown, foreach
knitr, rmarkdown, tibble, tools, testthat
knitr, openssl, redux, reticulate, rmarkdown, testthat, withr
magrittr (>= 1.5), testthat (>= 0.10.0), data.table (>=
1.9.6), dplyr (>= 0.4.3), knitr, rmarkdown
magrittr (>= 1.5), testthat (>= 0.10.0), data.table (>=
1.9.6), tibble (>= 1.3.3), knitr, rmarkdown
ggplot2, knitr, mapview, rmarkdown, testthat, covr
igraph, SnowballC, tm, huge, glmnet, Matrix, textir
igraph, SnowballC, tm, huge, glmnet, Matrix, jsonlite, clue
igraph, SnowballC, tm, huge, glmnet, Matrix, jsonlite, clue,
wordcloud
igraph, SnowballC, tm, huge, clue, wordcloud, KernSmooth, NLP
igraph, SnowballC, tm (>= 0.6), huge, clue, wordcloud,
KernSmooth, NLP, LDAvis, geometry, Rtsne
igraph, SnowballC, tm (>= 0.6), huge, clue, wordcloud,
KernSmooth, NLP, LDAvis, geometry, Rtsne, testthat
igraph, SnowballC, tm (>= 0.6), huge, clue, wordcloud,
KernSmooth, NLP, LDAvis, geometry, Rtsne, testthat, rsvd
clue, geometry, huge, igraph, LDAvis, KernSmooth, NLP, rsvd,
Rtsne, SnowballC, spelling, testthat, tm (>= 0.6), wordcloud
covr, curl, isa2, jsonlite, knitr, progress, rmarkdown,
testthat
mvtnorm (>= 1.1-1), testthat (>= 2.3.2), magrittr (>= 1.5),
knitr, LSD, RColorBrewer, factorstochvol
mvtnorm (>= 1.1-1), testthat (>= 2.3.2), magrittr (>= 1.5),
knitr, LSD, RColorBrewer, zoo
mvtnorm, testthat (>= 2.3.2), knitr, LSD (>= 4.0-0),
RColorBrewer, zoo, factorstochvol (>= 0.10.1)
testthat (>= 2.3.2), RColorBrewer, LSD, zoo, factorstochvol,
mvtnorm, knitr
testthat (>= 2.1.0), shiny, knitr, rmarkdown, stochvol
knitr, Deriv, testthat, markdown, rmarkdown
knitr, Deriv, testthat, markdown, rmarkdown, emulator
covr, lintr, quanteda, spelling, testthat
DBI, RSQLite, knitr, microbenchmark, testthat
DBI, RSQLite, knitr, microbenchmark, testthat (>= 1.0.0)
DBI (>= 0.6), RSQLite (>= 1.1-2), knitr, mockr, rbenchmark,
testthat (>= 1.0.0)
DBI (>= 0.6), RSQLite (>= 1.1-2), RPostgres, knitr, mockr,
progress, rbenchmark, testthat (>= 1.0.0)
DBI (>= 0.6), RSQLite (>= 1.1-2), RPostgres, knitr, mockr,
parallel, progress, rbenchmark, testthat (>= 1.0.0)
DBI (>= 0.6), RSQLite (>= 1.1-2), RPostgres, knitr, mockr,
parallel, progress, rbenchmark, rmarkdown, testthat (>= 1.0.0)
DBI (>= 0.6), RSQLite (>= 1.1-2), RPostgres, knitr, mockr,
parallel, progress, rbenchmark, rmarkdown, testthat (>= 3.0.0)
testthat, knitr, rmarkdown, tmap, OpenStreetMap
testthat, knitr, rmarkdown, tmap, OpenStreetMap, leaflet
testthat, knitr, rmarkdown, tmap, tmaptools, OpenStreetMap,
leaflet
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), stats19, cyclestreets, pbapply, leaflet,
rgdal
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), stats19, cyclestreets, pbapply, leaflet,
rgdal, pct, tmap, bench
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), stats19, cyclestreets, pbapply, leaflet,
rgdal, pct, tmap, bench, osrm
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), stats19, cyclestreets, pbapply, leaflet,
rgdal, pct, tmap, bench, openxlsx (>= 4.1.0), osrm
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
stats19, cyclestreets, pbapply, leaflet, rgdal, pct, tmap,
bench, openxlsx (>= 4.1.0), osrm, data.table, geodist
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), stats19, cyclestreets, pbapply, leaflet,
rgdal, pct, tmap, bench, openxlsx (>= 4.1.0), osrm, data.table,
geodist
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), stats19, cyclestreets, pbapply, leaflet,
rgdal, pct, tmap, bench, openxlsx (>= 4.1.0), osrm, data.table,
geodist, mapsapi
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), stats19, cyclestreets, pbapply, leaflet,
rgdal, pct, tmap, bench, openxlsx (>= 4.1.0), osrm, data.table,
geodist, mapsapi, s2
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), stats19, cyclestreets, pbapply, leaflet,
rgdal, pct, tmap, bench, openxlsx (>= 4.1.0), osrm, geodist,
mapsapi, s2
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), stats19, cyclestreets, leaflet, rgdal, pct,
tmap, bench, openxlsx (>= 4.1.0), osrm, geodist, mapsapi, s2
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), stats19, cyclestreets, leaflet, rgdal, pct,
tmap, bench, openxlsx (>= 4.1.0), osrm, geodist, mapsapi
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), stats19, cyclestreets, leaflet, rgdal, pct,
tmap, openxlsx (>= 4.1.0), osrm, geodist, mapsapi
testthat (>= 2.0.0), knitr (>= 1.20), rmarkdown (>= 1.10),
dodgr (>= 0.0.3), cyclestreets, leaflet, rgdal, pct, tmap,
openxlsx (>= 4.1.0), osrm, geodist, mapsapi
testthat (>= 2.0.0), knitr (>= 1.20), igraph (>= 1.2.2),
rmarkdown (>= 1.10), dodgr (>= 0.0.3), cyclestreets, leaflet,
rgdal, pct, tmap, openxlsx (>= 4.1.0), osrm, geodist, mapsapi
testthat (>= 2.0.0), knitr (>= 1.20), igraph (>= 1.2.2),
rmarkdown (>= 1.10), dodgr (>= 0.0.3), cyclestreets, leaflet,
rgdal, pct, tmap, openxlsx (>= 4.1.0), osrm, geodist, mapsapi,
opentripplanner
testthat (>= 2.0.0), knitr (>= 1.20), igraph (>= 1.2.2),
rmarkdown (>= 1.10), dodgr (>= 0.0.3), cyclestreets, leaflet,
pct, tmap, osrm, geodist, mapsapi, opentripplanner
cyclestreets, dodgr (>= 0.2.15), geodist, igraph (>= 1.2.2),
knitr (>= 1.20), leaflet, mapsapi, opentripplanner, osrm, pct,
rmarkdown (>= 1.10), testthat (>= 2.0.0), tmap
knitr, rmarkdown, graphics, grDevices, utils
testthat, knitr, rmarkdown, shiny, DT, Rsymphony
testthat, knitr, rmarkdown, shiny, shinyFiles, shinyjs, DT,
Rsymphony, officer, flextable, plotly
knitr, rmarkdown, prettydoc, dtplyr, testthat, FNN, dbscan,
autoencoder, rpart, ranger, abodOutlier, mvoutlier,
randomForest
DiagrammeR (>= 1.0.6.1), DiagrammeRsvg (>= 0.1), spelling,
testthat
knitr, rmarkdown, testthat, qgraph, hierfstat
knitr, optmatch (>= 0.9-11), rmarkdown, testthat (>= 2.1.0)
knitr, optmatch (>= 0.9-11), rmarkdown, testthat (>= 2.1.0),
glmnet (>= 4.0), randomForest (>= 4.6-14)
animation, DBI, rJava, RSQLite, testthat
animation, DBI, dplyr, rJava, RSQLite, testthat, knitr
knitr, rmarkdown, dismo, sp, raster, deldir, rgeos, ggplot2,
reshape2, sf, scales
knitr, rmarkdown, dismo, raster, deldir, rgeos, ggplot2,
reshape2, scales
devtools, h2o, h2oEnsemble, knitr, magrittr, RUnit, foreach,
doParallel
devtools, h2o, knitr, magrittr, RUnit, foreach, doParallel
testthat, knitr, rmarkdown, pacman, covr, spelling
testthat (>= 2.1.0), knitr, rmarkdown, pacman, covr, spelling
testthat (>= 2.1.0), knitr, rmarkdown, pacman, covr,
spelling, purrr
covr, knitr, pacman, purrr, rmarkdown, spelling, testthat (>=
2.1.0)
covr, knitr, purrr, rmarkdown, spelling, testthat (>= 2.1.0)
covr, knitr, purrr, rmarkdown, spelling, testthat (>= 2.1)
knitr, rmarkdown, testthat, microbenchmark, ggplot2, dplyr,
covr
knitr, rmarkdown, testthat, microbenchmark, ggplot2, dplyr,
covr, BH
qs, knitr, rmarkdown, usethis, dplyr, stringr, rlang
testthat, knitr, htmltools, htmlwidgets, rmarkdown, covr
covr, htmltools, htmlwidgets, knitr, rmarkdown, testthat
caret, datasets, e1071, knitr, randomForest, stats, testthat,
utils
lmtest, car, dynlm, e1071, tseries, foreach
stats4, car, dynlm, e1071, foreach, lmtest, mvtnorm, tseries
stats4, car, dynlm, e1071, foreach, lmtest, mvtnorm, tseries,
bfast
ggplot2, gWidgets, RGtk2, testthat, pcrsim
parallel, lavaan (>= 0.5.18), MplusAutomation (>= 0.7-2),
graphics, sn
parallel, lavaan (>= 0.5.18), MplusAutomation (>= 0.7-2),
graphics
mockr, rmarkdown, knitr, httr, prettydoc
data.tree, dplyr, here, knitr, mockr, rmarkdown, rstudioapi,
testthat
data.tree, dplyr, here, knitr, rmarkdown, rstudioapi,
testthat
data.tree, dplyr, here, knitr, prettycode, rmarkdown,
rstudioapi, testthat
data.tree (>= 0.1.6), dplyr, here, knitr, prettycode,
rmarkdown, rstudioapi (>= 0.7), testthat
data.tree (>= 0.1.6), dplyr, here, knitr, prettycode,
rmarkdown, rstudioapi (>= 0.7), testthat (>= 2.1.0)
data.tree (>= 0.1.6), digest, dplyr, here, knitr, prettycode,
rmarkdown, rstudioapi (>= 0.7), testthat (>= 2.1.0)
data.tree (>= 0.1.6), digest, dplyr, here, knitr, prettycode,
rmarkdown, roxygen2, rstudioapi (>= 0.7), testthat (>= 2.1.0)
data.tree (>= 0.1.6), digest, dplyr, here, knitr, prettycode,
rmarkdown, roxygen2, rstudioapi (>= 0.7), tibble (>= 1.4.2),
testthat (>= 3.0.0)
ade4TkGUI, adegraphics, ape, CircStats, deldir, lattice,
maptools, MASS, pixmap, spdep, splancs, waveslim
adegraphics, ape, CircStats, deldir, lattice, maptools, MASS,
pixmap, spdep, splancs, waveslim
mockery, testthat, knitr, rmarkdown (>= 1.0)
arm, caret, class, e1071, earth, gam, gbm, glmnet, Hmisc,
ipred, lattice, LogicReg, MASS, mda, mlbench, nnet, parallel,
party, polspline, quadprog, randomForest, rpart, SIS, spls,
stepPlr
arm, caret, class, cvAUC, e1071, earth, gam, gbm, glmnet,
Hmisc, ipred, lattice, LogicReg, MASS, mda, mlbench, nnet,
parallel, party, polspline, quadprog, randomForest, rpart, SIS,
spls, stepPlr
ggplot2 (>= 3.1.0), knitr, pkgdown, rmarkdown, spData,
testthat (>= 2.1.0)
ggplot2 (>= 3.3.6), knitr, pkgdown, rmarkdown, testthat (>=
2.1.0)
knitr, rmarkdown, viridis, covr, testthat
covr, knitr, plotly, rmarkdown, testthat, viridis
covr, knitr, plotly, readr, rmarkdown, testthat, tsibble (>=
0.5.0), viridis
covr, knitr, plotly, readr, rmarkdown, testthat, tidyr,
tsibble (>= 0.5.0), viridis
covr, knitr, plotly, readr, rmarkdown, testthat, tidyr,
tsibble (>= 0.6.0), viridis
covr, knitr, plotly, readr, rmarkdown, testthat, tidyr,
tsibble (>= 0.8.0), viridis
forcats, knitr, magrittr, rmarkdown, rstudioapi
forcats, kableExtra, knitr, magrittr, rmarkdown, rstudioapi
forcats, formatR, kableExtra, knitr, magrittr, rmarkdown,
rstudioapi
ggplot2, latex2exp, fabricatr, fixest, haven, sandwich,
lmtest, testthat (>= 3.0.0), knitr, rmarkdown, covr
jsonlite, knitr, markdown, pipeR, testthat
jsonlite, knitr, markdown, pipeR, testthat, tidyr (>= 0.7.0)
jsonlite, knitr, markdown, pipeR, testthat, tidyr (>= 0.7.0),
rmarkdown
arm, bartMachine, class, e1071, earth, extraTrees, gbm,
glmnet, ipred, KernelKnn, kernlab, LogicReg, MASS, nnet, party,
polspline, randomForest, ranger, rpart, speedglm, spls, xgboost
grid, gridExtra, knitr, rmarkdown, car, fMultivar, lattice,
lawstat, reshape2, testthat, schoRsch, emojifont, sadists
car, emojifont, fMultivar, grid, gridExtra, knitr, lattice,
lawstat, reshape2, rmarkdown, sadists, testthat
emojifont, fMultivar, grid, gridExtra, knitr, lattice,
lawstat, boot, car, reshape2, rmarkdown, sadists, scales,
testthat, tibble
emojifont, fMultivar, grid, gridExtra, knitr, lattice,
lawstat, boot, car, png, reshape2, rmarkdown, sadists, scales,
testthat, tibble
dplyr, psych, emojifont, fMultivar, grid, gridExtra, knitr,
lattice, lawstat, boot, png, reshape2, rmarkdown, sadists,
scales, testthat, tibble
knitr, covr, testthat (>= 3.0.0), rmarkdown, stars
knitr (>= 1.11), RColorBrewer, rmarkdown, testthat (>=
0.11.0),
knitr, rlang, testthat, rmarkdown, naivebayes(>= 0.9),
ClusterR(>= 1.1), FNN(>= 1.1), liquidSVM(>= 1.2), ranger(>=
0.10), caret(>= 6.0), xgboost(>= 0.6), glmnet(>= 2.0),
kableExtra, tm(>= 0.7), Matrix(>= 1.2)
knitr, rlang, testthat, rmarkdown, naivebayes(>= 0.9),
ClusterR(>= 1.1), FNN(>= 1.1), ranger(>= 0.10), caret(>= 6.0),
xgboost(>= 0.6), glmnet(>= 2.0), kableExtra, tm(>= 0.7),
Matrix(>= 1.2), e1071(>= 1.7)
knitr, rlang, testthat, rmarkdown, naivebayes(>= 0.9),
ClusterR(>= 1.1), FNN(>= 1.1), ranger(>= 0.10), caret(>= 6.0),
xgboost(>= 0.6), glmnet(>= 2.0), e1071(>= 1.7)
ggformula, mosaic, Lock5Data, Lock5withR, okcupiddata,
fivethirtyeight
car, dplyr, mosaic, Lock5withR, okcupiddata, fivethirtyeight,
purrr, rlang, testthat
testthat (>= 2.1.0), covr, rlang, tibble, tidyr, car
testthat (>= 2.1.0), covr, tibble, tidyr, car, lme4
car, covr, lintr, lme4, testthat (>= 2.1.0), vdiffr, tidyr
car, covr, lintr, lme4, testthat (>= 2.1.0), tidyr, vdiffr
DoE.base, crossdes, survival, mlogit, gmnl, apollo
testthat (>= 2.1.0), covr, knitr, rmarkdown, digest (>=
0.6.23)
RUnit, BiocGenerics, graphite, curatedOvarianData, MASS,
BiocStyle, org.Hs.eg.db
testthat (>= 2.1.0), vdiffr, knitr, rmarkdown, survminer
knitr, rmarkdown, survminer, testthat (>= 2.1.0), vdiffr,
withr
parallel, grid, xts, gridExtra, lattice, colorspace, scales,
animation, msm, spc, quadprog, memoise, polyclip, rgeos,
gpclib, maptools, intervals, spdep, numDeriv, maxLik, gsl,
testthat, coda, splancs, gamlss, INLA, runjags
parallel, grid, xts, gridExtra, lattice, colorspace, scales,
animation, msm, spc, quadprog, memoise, polyclip, rgeos,
gpclib, maptools, intervals, spdep, numDeriv, maxLik, gsl,
testthat, coda, splancs, gamlss, INLA, runjags, knitr
parallel, grid, xts, gridExtra, lattice, colorspace, scales,
animation, msm, spc, quadprog, memoise, polyclip, rgeos,
gpclib, maptools, intervals, spdep, numDeriv, maxLik, gsl,
testthat (>= 0.11.0), coda, splancs, gamlss, INLA (>=
0.0-1458166556), runjags, ggplot2, MGLM, knitr
parallel, grid, xts, gridExtra, lattice, colorspace, scales,
animation, msm, spc, quadprog, memoise, polyclip, rgeos,
gpclib, maptools, intervals, spdep, numDeriv, maxLik, gsl,
fanplot, testthat (>= 0.11.0), coda, splancs, gamlss, INLA (>=
0.0-1458166556), runjags, ggplot2, MGLM, knitr
parallel, grid, xts, gridExtra, lattice, colorspace, scales,
animation, msm, spc, quadprog, memoise, polyclip, rgeos,
gpclib, maptools, intervals, spdep, numDeriv, maxLik, gsl,
fanplot, hhh4contacts, testthat (>= 0.11.0), coda, splancs,
gamlss, INLA (>= 0.0-1458166556), runjags, ggplot2, MGLM, knitr
parallel, grid, xts, gridExtra, lattice, colorspace, scales,
animation, rmapshaper, msm, spc, quadprog, memoise, polyclip,
rgeos, gpclib, maptools, intervals, spdep, numDeriv, maxLik,
gsl, fanplot, hhh4contacts, testthat (>= 0.11.0), coda,
splancs, gamlss, INLA (>= 0.0-1458166556), runjags, ggplot2,
MGLM (>= 0.1.0), knitr
parallel, grid, xts, gridExtra (>= 2.0.0), lattice,
colorspace, scales, animation, rmapshaper, msm, spc, quadprog,
memoise, polyclip, rgeos, gpclib, maptools, intervals, spdep,
numDeriv, maxLik, gsl, fanplot, hhh4contacts, testthat (>=
0.11.0), coda, splancs, gamlss, INLA (>= 0.0-1458166556),
runjags, ggplot2, MGLM (>= 0.1.0), knitr
parallel, grid, gridExtra (>= 2.0.0), lattice, colorspace,
scales, animation, msm, spc, quadprog, memoise, polyclip,
rgeos, gpclib, maptools, intervals, spdep, numDeriv, maxLik,
gsl, fanplot, hhh4contacts, tinytest (>= 1.2.4), coda, splancs,
gamlss, INLA, runjags, MGLM (>= 0.1.0), knitr
Matrix, mvtnorm, RUnit, digest, coda, gamlss, splancs,
statmod, animation, RColorBrewer, vcd, maptools, VGAM
msm, spc, colorspace, animation, quadprog, mvtnorm, statmod,
memoise, gpclib, maptools, intervals, spdep, numDeriv, maxLik,
RUnit, digest, coda, splancs, gamlss
msm, spc, colorspace, animation, quadprog, memoise, rgeos,
gpclib, maptools, intervals, spdep, numDeriv, maxLik, RUnit,
digest, coda, splancs, gamlss
msm, spc, colorspace, animation, quadprog, parallel, memoise,
polyclip, rgeos, gpclib, maptools, intervals, spdep, numDeriv,
maxLik, RUnit, digest, coda, splancs, gamlss
parallel, lattice, grid, gridExtra, colorspace, scales,
animation, msm, spc, quadprog, memoise, polyclip, rgeos,
gpclib, maptools, intervals, spdep, numDeriv, maxLik, testthat,
coda, splancs, gamlss, INLA, runjags
parallel, grid, gridExtra, lattice, colorspace, scales,
animation, msm, spc, quadprog, memoise, polyclip, rgeos,
gpclib, maptools, intervals, spdep, numDeriv, maxLik, testthat,
coda, splancs, gamlss, INLA, runjags
parallel, grid, xts, gridExtra, lattice, colorspace, scales,
animation, msm, spc, quadprog, memoise, polyclip, rgeos,
gpclib, maptools, intervals, spdep, numDeriv, maxLik, testthat,
coda, splancs, gamlss, INLA, runjags
censored, covr, gbm, generics, glmnet, knitr, mboost,
parsnip, progressr, randomForestSRC, ranger, rmarkdown,
testthat (>= 3.0.0), withr, xgboost
censored, covr, gbm, generics, glmnet, ingredients, knitr,
mboost, parsnip, progressr, randomForestSRC, ranger, rmarkdown,
testthat (>= 3.0.0), withr, xgboost
survival, MASS, KernSmooth, hexbin, mitools, lattice, RSQLite, RODBC, quantreg, splines
survival, MASS, KernSmooth, hexbin, mitools, lattice,
RSQLite, RODBC, quantreg, splines
survival, MASS, KernSmooth, hexbin, mitools, lattice,
RSQLite, RODBC, quantreg, splines, Matrix
survival, MASS, KernSmooth, hexbin, mitools, lattice,
RSQLite, RODBC, quantreg, splines, Matrix, multicore
survival, MASS, KernSmooth, hexbin, mitools, lattice,
RSQLite, RODBC, quantreg, splines, Matrix, multicore, sem
survival, MASS, splines, KernSmooth, hexbin, mitools,
lattice, RSQLite, RODBC, quantreg, Matrix, multicore
survival, MASS, splines, KernSmooth, hexbin, mitools,
lattice, RSQLite, RODBC, quantreg, Matrix, multicore,
CompQuadForm
foreign, survival, MASS, splines, KernSmooth, hexbin,
mitools, lattice, RSQLite, RODBC, quantreg, Matrix, multicore,
CompQuadForm
foreign, survival, MASS, splines, KernSmooth, hexbin,
mitools, lattice, RSQLite, RODBC, quantreg, Matrix, parallel,
CompQuadForm
foreign, MASS, KernSmooth, hexbin, mitools, RSQLite, RODBC,
quantreg, parallel, CompQuadForm, DBI
foreign, MASS, KernSmooth, hexbin, RSQLite, RODBC, quantreg,
parallel, CompQuadForm, DBI
foreign, MASS, KernSmooth, hexbin, RSQLite, quantreg,
parallel, CompQuadForm, DBI, AER
survival, MASS, KernSmooth, hexbin, mitools
survival, MASS, KernSmooth, hexbin, mitools, lattice, RSQLite, RODBC
survival, MASS, KernSmooth, hexbin, mitools, lattice, RSQLite
testthat, knitr, rmarkdown, withr, covr, rprojroot
testthat, knitr, rmarkdown, withr, covr, rprojroot, spelling
testthat, survsim, broom, readr, pander, magrittr, Biobase,
GGally, knitr, rmarkdown
tidyverse, magrittr, testthat (>= 3.0.0)
distr6 (>= 1.4.4), keras, pseudo, reticulate, survival,
testthat
distr6 (>= 1.6.6), keras, pseudo, reticulate, survival,
testthat
distr6 (>= 1.4.7), keras, pseudo, reticulate, survival,
testthat
distr6 (>= 1.6.0), keras, pseudo, reticulate, survival,
testthat
knitr, RTCGA(>= 1.4.0), RTCGA.clinical(>= 20151101.4.0),
KMsurv
knitr, flexsurv, cmprsk, markdown, testthat, rmarkdown
covr, MASS, reshape2, testthat (>= 3.0.0)
testthat, knitr, rmarkdown, survival, cmprsk, tibble
CFC, covr, knitr, randomForestSRC, rmarkdown, rms, testthat,
tibble
CFC, covr, DALEX, knitr, markdown, randomForestSRC,
rmarkdown, rms, testthat, tibble
testthat, microbenchmark, knitr, rmarkdown, L0Learn, genlasso
curl, testthat, microbenchmark, knitr, rmarkdown, L0Learn,
genlasso, Rfast
curl, testthat, microbenchmark, knitr, rmarkdown, L0Learn,
genlasso, Rfast, cowplot
curl, testthat, microbenchmark, knitr, rmarkdown, L0Learn,
Rfast, cowplot
covr, markdown, knitr, testthat, spelling
covr, rmarkdown, knitr, testthat, spelling
covr, knitr, markdown, testthat, spelling
svSocket, curl, spelling, covr, knitr, rmarkdown
svHttp, svSocket, spelling, covr, knitr, rmarkdown
rJava, tcltk, covr, knitr, markdown, testthat, spelling
rJava, tcltk, covr, knitr, markdown, rmarkdown, testthat,
spelling
svHttp, spelling, covr, knitr, rmarkdown
svGUI, datasets, XML, RUnit, knitr, covr, spelling
svGUI, datasets, XML, RUnit, knitr, markdown, covr, spelling
testthat (>= 2.1.0), knitr, rmarkdown, tsDyn
gridSVG, htmltools, knitr, SVGAnnotation, XML
gridSVG, htmltools, knitr, SVGAnnotation, XML, xml2
gridSVG, htmltools, knitr, svglite, XML, xml2
htmltools, testthat, xml2 (>= 1.0.0), covr, fontquiver (>=
0.2.0), knitr, rmarkdown
testthat (>= 3.0.0), knitr, rmarkdown, stats
knitr, covr, testthat (>= 3.0.0), rmarkdown, tidycensus,
dplyr
knitr, covr, testthat (>= 3.0.0), rmarkdown, tidycensus,
dplyr, srvyr
doParallel, e1071, foreach, ggplot2, glmnet, grDevices,
iterators, kernlab, knitr, lattice, methods, mlbench,
ModelMetrics, nlme, parallel, plyr, pROC, randomForest,
recipes, remotes, reshape2, stats4, rmarkdown, utils, withr
testthat, fftwtools, fields, signal, nloptr, knitr,
rmarkdown, devtools
knitr, covr, testthat (>= 3.0.0), rmarkdown, bench
forcats, knitr, rmarkdown, testthat, purrr, readr, stringr,
scales, tidyquant, tidyverse
forcats, knitr, rmarkdown, testthat, purrr, readr, robets,
stringr, scales, tidyquant, tidyverse
forcats, knitr, rmarkdown, testthat, purrr, readr, robets,
stringr, scales, tidyquant, tidyverse, fracdiff
knitr, rmarkdown, testthat (>= 2.1.0), tibble
knitr, rmarkdown, stringr, testthat (>= 2.1.0)
DEoptim, ggplot2, sf (>= 0.6-0), knitr, rmarkdown, testthat
DEoptim, ggplot2, sf (>= 0.6-1), knitr, rmarkdown, testthat
glpkAPI (>= 1.2.1), clpAPI (>= 1.1.6), cplexAPI (>= 1.2.1),
lpSolveAPI (>= 5.5.2.0), parallel, multicore, grid, lattice
glpkAPI (>= 1.2.1), cplexAPI (>= 1.2.1), clpAPI (>= 1.2.0),
lpSolveAPI (>= 5.5.2.0), parallel, multicore, grid, lattice
glpkAPI (>= 1.2.1), cplexAPI (>= 1.2.3), clpAPI (>= 1.2.0),
lpSolveAPI (>= 5.5.2.0), parallel, multicore, grid
glpkAPI (>= 1.2.1), cplexAPI (>= 1.2.4), clpAPI (>= 1.2.0),
lpSolveAPI (>= 5.5.2.0), parallel, grid
glpkAPI (>= 1.2.7), cplexAPI (>= 1.2.4), clpAPI (>= 1.2.3),
lpSolveAPI (>= 5.5.2.0), parallel, grid
glpkAPI (>= 1.2.8), cplexAPI (>= 1.2.4), clpAPI (>= 1.2.4),
lpSolveAPI (>= 5.5.2.0), parallel, grid
crayon, pracma, odeintr, testthat (>= 2.1.0), knitr,
rmarkdown
glue, covr, testthat (>= 2.1.0), spelling
maptools, ncdf4, pkgdown, udunits2, gridExtra
maptools, ncdf4, rgeos, udunits2, gridExtra
testthat (>= 2.1.0), dplyr (>= 1.0.0), knitr, rmarkdown,
tidyr, plotly
testthat, sp (>= 1.2), leaflet (>= 1.0), shiny (>= 0.13),
knitr, rmarkdown, R.rsp
testthat, sp (>= 1.2), knitr, rmarkdown, R.rsp
testthat, devtools, knitr, rmarkdown, zoo
zoo, knitr, WASP, NPRED, rmarkdown, testthat, devtools
testthat (>= 2.1.0), covr, knitr, rmarkdown, tools
devtools, readxl, stringr, knitr, pander, testthat (>=
0.9.1), parallel
devtools, knitr, pander, parallel, readxl, rmarkdown,
stringr, testthat (>= 0.9.1)
knitr, dplyr (>= 0.4.1), ggplot2, testthat
knitr, rmarkdown, bookdown, MASS, magrittr
xtable, grid, lattice, gdata, fields, maps, geoR, sp,
maptools, shapefiles, spatial, rgdal, mapproj, akima, mgcv,
lattice, caTools, pspline
xtable, grid, lattice, gdata, fields, maps, geoR, sp,
maptools, shapefiles, spatial, mapproj, akima, mgcv, lattice,
caTools, pspline, ggplot2
xtable, grid, lattice, caTools, pspline, grid,
ggplot2, gdata
xtable, grid, lattice, caTools, pspline, ggplot2, gdata,
RSQLite, data.table, stringr
xtable, grid, lattice, gdata, fields, maps, geoR, sp,
maptools, shapefiles, spatial, rgdal, mapproj, akima, mgcv,
lattice, caTools, pspline, RODBC
gdata, fields, maps, geoR, maptools, shapefiles, spatial,
mapproj, akima, mgcv, caTools, pspline, RCurl, RJSONIO
gdata, fields, maps, geoR, maptools, shapefiles, spatial,
mapproj, akima, mgcv, caTools, pspline
testthat, covr, knitr, rmarkdown, magrittr, dplyr, tidyr,
tibble, gt
rmarkdown, knitr, markdown, spelling, testthat (>= 3.0.0)
survival, testthat, Matrix, dummies, Matching, reshape2,
ggplot2, knitr, geepack, lme4
survival, testthat, Matrix, Matching, reshape2, ggplot2,
knitr, geepack, lme4
survival, testthat, Matrix, Matching, reshape2, ggplot2,
knitr, geepack, lme4, rmarkdown
survival, testthat, Matrix, Matching, reshape2, ggplot2,
knitr, geepack, lme4, lmerTest, rmarkdown
survival, testthat, Matrix, dummies, Matching, reshape2,
ggplot2, knitr
lattice, corrgram, perturb, car, vcd, abind
magrittr, kableExtra (>= 0.9.0), Hmisc, bookdown, rmarkdown
magrittr, kableExtra (>= 0.9.0), Hmisc, bookdown
ggtext, gridtext, quadprog, xtable, knitr, rmarkdown
knitr, magrittr, rmarkdown, yamlet, boot, testthat
knitr, magrittr, rmarkdown, yamlet (>= 0.6.9), boot, testthat
knitr, magrittr, rmarkdown, yamlet (>= 0.6.9), boot,
testthat, shiny, shinyFiles, fs, haven, yaml, sortable,
latexpdf, tools, csv
knitr, magrittr, rmarkdown, yamlet (>= 0.6.9), boot,
testthat, shiny, shinyFiles, fs, haven, yaml, sortable,
latexpdf, tools, csv, xtable
knitr, magrittr, rmarkdown, yamlet (>= 0.6.9), boot,
testthat, shiny, shinyFiles, fs, haven, yaml, sortable,
latexpdf (>= 0.1.7), tools, csv, xtable, shinyAce, R.utils
knitr, rmarkdown, yamlet (>= 0.8.7), boot, testthat, shiny,
shinyFiles, haven, yaml, sortable, latexpdf (>= 0.1.7), tools,
csv, xtable, shinyAce, R.utils
testthat, modeldata, recipes, parsnip, dials, withr, knitr,
rmarkdown, vip, tidyverse
testthat, modeldata, recipes, parsnip, dials, withr, knitr,
rmarkdown, vip, tidyverse, ggplot2, dplyr, tidyr, purrr
testthat, modeldata, recipes, parsnip, dials, withr, knitr,
rmarkdown, vip, tidyverse, ggplot2, dplyr, tidyr, purrr, tune,
workflows
ff (>= 2.2-0), gWidgets, gWidgetsRGtk2, classInt, ggplot2
ff (>= 2.2-0), gWidgets, gWidgetsRGtk2, classInt
shiny (>= 0.6), knitr, classInt, ggplot2
shiny (>= 1.0.0), knitr, classInt, ggplot2
testthat, knitr, rmarkdown, covr, kableExtra
testthat, knitr, rmarkdown, covr, kableExtra, lintr
testthat, knitr, rmarkdown, covr, kableExtra, lintr,
htmltools, fansi
testthat, knitr, rmarkdown, covr, kableExtra, htmltools,
fansi
testthat, knitr, rmarkdown, covr, kableExtra, gridExtra,
htmltools, fansi, tuneR, png
covr, khroma, knitr, pbapply, rmarkdown, testthat
covr, folio, khroma, knitr, magrittr, rmarkdown, testthat (>=
3.0.0), vdiffr
covr, folio, khroma, knitr, magrittr, rmarkdown, testthat (>=
3.0.0), vdiffr (>= 1.0.0)
covr, testthat, knitr, rmarkdown, sf, spdplyr
covr, knitr, rmarkdown, testthat (>= 2.1.0), spelling
countrycode, zipangu, knitr, rmarkdown, testthat (>= 2.1.0)
graphics, grDevices, knitr, miniUI, shiny, testthat
fansi (>= 0.5.0), htmltools (>= 0.5.0), knitr, openxlsx (>=
4.0.0), rmarkdown, rstudioapi (>= 0.1), testthat (>= 3.0.0)
covr, forecast, knitr, rmarkdown, testthat, zoo
cowplot, knitr, rmarkdown, testthat, covr
covr, cowplot, knitr, rmarkdown, testthat
covr, testthat, microbenchmark, compiler, pmatch (>= 0.1.2)
covr, testthat, microbenchmark, compiler, pmatch (>= 0.1.4)
testthat, knitr, rmarkdown, tidyverse, ggplot2, purrr,
shinydashboard
testthat, rms, rmarkdown, Hmisc, sandwich, dplyr, Matching,
epitools
grf, mgcv, testthat (>= 0.11), rmarkdown, knitr
grf, mgcv, testthat (>= 0.11), rmarkdown, scatterplot3d,
SuperLearner (>= 2.0-28), knitr
knitr, rmarkdown, miniUI, shiny, testthat
knitr, markdown, rmarkdown, testthat (>= 3.0.0), jpeg,
patternplot
testthat, rprojroot, kableExtra, knitr, rmarkdown
roxygen2 (>= 6.0.1), testthat, rmarkdown (>= 0.9.6), taxize
roxygen2 (>= 6.0.1), testthat, rmarkdown (>= 0.9.6)
spelling, testthat, covr, knitr, rmarkdown, purrr,
MonetDBLite, duckdb
spelling, testthat, covr, knitr, rmarkdown, purrr
spelling, testthat, covr, knitr, rmarkdown, purrr, crayon
spelling, testthat, covr, knitr, rmarkdown, purrr, crayon,
RSQLite
jsonlite, spelling, testthat, covr, knitr, rmarkdown,
progress, utf8
jsonlite, spelling, testthat, covr, knitr, rmarkdown,
progress, utf8, crayon
testthat, roxygen2, rjson, knitr, jsonlite
testthat, roxygen2 (>= 6.0.1), knitr, vegan
roxygen2 (>= 6.1.1), testthat, knitr, vegan, vcr
ape, devtools, knitr, stringi, taxa, rmarkdown
devtools, knitr, stringi, taxa, rmarkdown
devtools, goodpractice, knitr, stringi, testthat, rmarkdown,
covr
devtools, goodpractice, knitr, stringi, testthat, rmarkdown,
roxygen2, covr
ape, knitr, testthat, rmarkdown, roxygen2
palmerpenguins, knitr, rmarkdown, spelling, testthat (>=
3.0.0), vdiffr (>= 1.0.2)
TH.data (>= 1.0-9), tram (>= 0.2-3), survival, partykit,
lattice, latticeExtra, knitr, colorspace, gamlss.data, trtf
knitr, rmarkdown, testthat, MASS, ggplot2
covr, ggalt, ggplot2, testthat, knitr, rmarkdown
spelling, covr, ggalt, ggplot2, testthat, knitr, rmarkdown
knitr, rmarkdown, testthat (>= 2.1.0), ggplot2, viridis,
future.apply, tictoc, censReg, truncreg, microbenchmark
BiocCheck, covr, knitr, rmarkdown, spelling, testthat
limma, edgeR, DESeq2, S4Vectors, knitr, rmarkdown
limma, edgeR, DESeq2, S4Vectors, knitr, rmarkdown, testthat,
covr
testthat (>= 2.1.0), knitr, rmarkdown, mrgsolve
testthat (>= 2.1.0), rmarkdown, mrgsolve
roxygen2, knitr, prettydoc, rmarkdown, htmlTable
roxygen2, knitr, prettydoc, rmarkdown, htmlTable, testthat
(>= 2.1.0)
roxygen2, knitr, prettydoc, rmarkdown, htmlTable, testthat
(>= 2.1.0), reshape2, viridis, kableExtra, colorspace, magrittr
knitr, rmarkdown, testthat, vdiffr (>= 0.2)
tuneR, alluvial, covr, testthat, devtools, GA,
sonicscrewdriver
testthat, rmarkdown, radarchart, networkD3, diagram,
DiagrammeR, visNetwork, metricsgraphics, leaflet, shinyAce,
plotly, tidyr
testthat, knitr, rmarkdown, tidyr, ggplot2
testthat, knitr, rmarkdown, tidyr, ggplot2, covr
covr, ggplot2, knitr, rmarkdown, testthat, tidyr
covr, devtools, knitr, promises, rmarkdown, testthat
knitr, rgdal, rmarkdown, RTriangle, stars, terrainmeshr,
tidyverse
knitr, rgdal, rmarkdown, RTriangle, stars, terrainmeshr,
tidyverse, testthat (>= 3.0.0), covr, spelling
RNifti, covr, doParallel, foreach, knitr, rmarkdown, INLA,
parallel, testthat (>= 3.0.0)
testthat (>= 2.1.0), keras, tfestimators, callr
lattice (>= 0.20.38), parallel, rmarkdown (>= 1.12), knitr
(>= 1.22), tibble, testthat, covr
dplyr, gt, ggplot2, knitr, rmarkdown, testthat (>= 3.0.0)
parallel, tinytest, ncdf4, sf (>= 0.9-8)
parallel, tinytest, ncdf4, sf (>= 0.9-8), deldir
parallel, tinytest, ncdf4, sf (>= 0.9-8), deldir, raster
parallel, tinytest, ncdf4, sf (>= 0.9-8), deldir, XML, raster
parallel, tinytest, ncdf4, sf (>= 0.9-8), deldir, XML, igraph
parallel, tinytest, ncdf4, sf (>= 0.9-8), deldir, XML,
leaflet
testthat, covr, progressr, knitr, rmarkdown, progress, jpeg,
tiff, brio
brio, covr, jpeg, knitr, progress, progressr, raster, rgdal,
rmarkdown, testthat, tiff
brio, covr, jpeg, knitr, progress, progressr, rgdal,
rmarkdown, testthat, tiff
rmarkdown, knitr, uniformly, viridisLite, paletteer
magick (>= 1.7), spelling, knitr, rmarkdown
magick (>= 1.7), spelling, knitr, tibble, rmarkdown
covr, knitr, rmarkdown, PeakSegDP, PeakSegOptimal
covr, crayon, knitr, labelled, lubridate, openxlsx, rmarkdown
covr, devtools, withr, rstudioapi, htmltools, shiny, yaml, DT
covr, devtools, knitr, rmarkdown, usethis, xml2
covr, curl (>= 0.9.5), devtools, knitr, rmarkdown, usethis,
vctrs (>= 0.1.0), xml2
covr, curl (>= 0.9.5), diffviewer (>= 0.1.0), knitr, mockery,
rmarkdown, rstudioapi, shiny, usethis, vctrs (>= 0.1.0), xml2
rprojroot, knitr, rmarkdown, rstudioapi, roxygen2 (>= 5.0.0)
knitr, rmarkdown, rstudioapi, roxygen2 (>= 5.0.0), covr,
crayon
covr, crayon, knitr, rmarkdown, roxygen2 (>= 5.0.0),
rstudioapi
magrittr (>= 1.0.1), xtable, shiny, rmarkdown, knitr,
testthat, covr
magrittr, xtable, shiny, rmarkdown, knitr, testthat, covr
magrittr, xtable, shiny, rmarkdown, knitr, testthat, covr,
slickR
covr, kableExtra, nlme, rmarkdown, shiny, slickR, testthat,
texreg, xtable
covr, kableExtra, nlme, rmarkdown, shiny, slickR, testthat,
texreg, xtable, details, pdftools
covr, kableExtra, nlme, pdftools, rmarkdown, shiny, slickR,
testthat, texreg, xtable
covr, kableExtra, nlme, pdftools, rmarkdown, shiny, testthat,
texreg, xtable
MASS, gridExtra, parallel, lattice, knitr, testthat,
devtools, GGally
MASS, gridExtra, parallel, lattice, knitr, testthat,
devtools, survival, ismev
MASS, gridExtra, parallel, lattice, knitr, dplyr, tidyr,
testthat, devtools, survival, ismev
MASS, gridExtra, parallel, lattice, knitr, rmarkdown, dplyr,
tidyr, testthat, devtools, survival, ismev
MASS, gridExtra, parallel, lattice, knitr, testthat,
devtools, GGally, survival, ismev
nlme, survival, network, ergm, lme4 (>= 1.0)
nlme, survival, network, ergm, lme4 (>= 1.0), btergm, gamlss
nlme, survival, network, ergm, lme4 (>= 1.0), gamlss
nlme, survival, network, ergm, lme4 (>= 1.0), btergm
nlme, survival, network, ergm, lme4 (>= 1.0), btergm, Zelig
(>= 5.0-16)
knitr, rmarkdown, testthat, rio, glmnet, randomForest, covr,
xml2, ranger
testthat (>= 3.0.0), tidytext, tm, quanteda, knitr, rmarkdown
aws.polly, covr, rmarkdown, testthat, stringi
covr, knitr, rmarkdown, testthat, stringi
testthat, knitr, rmarkdown, glmnet, parallel
stringr (>= 1.1.0), testthat, covr, knitr, rmarkdown, glmnet,
parallel
stringr (>= 1.1.0), doParallel, testthat, covr, knitr,
rmarkdown, glmnet, parallel
doParallel, testthat, covr, knitr, rmarkdown, glmnet,
parallel, tokenizers, magrittr
magrittr, udpipe (>= 0.6), glmnet, testthat, covr, knitr,
rmarkdown, proxy
digest, igraph, knitr, MASS, rmarkdown, stringi, wordcloud
digest, igraph, knitr, MASS, rmarkdown, stringi, topicmodels,
wordcloud
digest, igraph, knitr, lda, MASS, rmarkdown, SnowballC,
stringi, testthat, topicmodels, wordcloud
digest, dplyr, igraph, knitr, lda, MASS, rmarkdown,
SnowballC, stringi, testthat, tibble, tidyr, tidytext,
topicmodels, wordcloud
spelling, digest, dplyr, igraph, knitr, lda, MASS, rmarkdown,
SnowballC, stringi, testthat, tibble, tidyr, tidytext,
topicmodels, wordcloud
udpipe, BTM, graph, Rgraphviz, qgraph, glasso, ggplot2,
ggraph, ggforce, concaveman
udpipe, BTM, igraph, graph, Rgraphviz, qgraph, glasso,
ggplot2, ggraph, ggforce, concaveman
knitr, udpipe, BTM, igraph, graph, Rgraphviz, qgraph, glasso,
ggplot2, ggraph, ggforce, concaveman
knitr, udpipe, BTM, igraph, graph, Rgraphviz, qgraph, glasso,
ggplot2, ggraph, ggforce, concaveman, ggrepel, ggalt, uwot
textreuse, knitr, rmarkdown, udpipe (>= 0.2)
covr, testthat (>= 2.1.0), knitr, text2vec, rmarkdown,
textfeatures (>= 0.3.3)
covr, testthat (>= 2.1.0), knitr, text2vec, rmarkdown,
textfeatures (>= 0.3.3), spacyr
covr, testthat (>= 2.1.0), knitr, text2vec, rmarkdown,
textfeatures (>= 0.3.3), modeldata, spacyr
covr, knitr, modeldata, rmarkdown, spacyr, stopwords,
testthat (>= 2.1.0), text2vec, textfeatures (>= 0.3.3), stringi
covr, janitor, knitr, modeldata, rmarkdown, spacyr,
stopwords, testthat (>= 2.1.0), text2vec, textfeatures (>=
0.3.3), stringi, tokenizers.bpe, udpipe
covr, janitor, knitr, modeldata, rmarkdown, sentencepiece,
spacyr, stopwords, stringi, testthat (>= 3.0.0), text2vec,
textfeatures (>= 0.3.3), tokenizers.bpe, udpipe, wordpiece
corrplot, knitr, SnowballC (>= 0.5.1), xtable
corrplot, knitr, SnowballC (>= 0.5.1), xtable, testthat, plyr
corrplot, knitr, SnowballC (>= 0.5.1), xtable, testthat,
plyr, rmarkdown
rlang, spelling, testthat (>= 2.1.0), knitr, tfdatasets,
magrittr, rmarkdown, keras
tensorflow, rlang, testthat (>= 2.1.0), knitr, tfdatasets,
magrittr, rmarkdown, keras
testthat, knitr, keras, rsample, rmarkdown, Metrics, dplyr
testthat, knitr, keras, rsample, rmarkdown, Metrics, dplyr,
tfestimators
cloudml, knitr, pixels, processx, testthat, yaml
cloudml, knitr, pixels, processx, testthat, yaml, stringr
ggplot2, modelr (>= 0.1.1), testthat, knitr
ggplot2, modelr (>= 0.1.1), testthat, rmarkdown, knitr
testthat (>= 2.1.0), knitr, tfestimators, keras, rmarkdown,
callr, recipes, tibble, abind, fs, pins, magick
testthat (>= 2.1.0), knitr, tfestimators, keras, rmarkdown,
callr, recipes, tibble, abind, fs,
tfdatasets, testthat (>= 2.1.0), knitr, markdown
tfdatasets, testthat (>= 2.1.0), knitr, rmarkdown
zoo, xts, its, tis, timeSeries, methods, WriteXLS(>= 1.7.0)
tfplot, zoo, xts, its, tis, timeSeries, methods, WriteXLS(>=
1.7.0)
tfplot, zoo, xts, its, tis, WriteXLS(>= 1.7.0)
tfplot, zoo, xts, tis, WriteXLS(>= 1.7.0)
covr, knitr, rlang, rmarkdown, testthat, withr
igraph, covr, curl, devtools, knitr, rmarkdown, testthat (>=
3.0.0), edgebundle, ggplot2, maps, sf, ggraph
testthat (>= 3.0.0), bookdown, covr, knitr
lifecycle, cachem, bslib, knitr, markdown, rmarkdown,
pkgdown, testthat
lattice, stats, withr, sysfonts, showtext, Cairo,
systemfonts, ragg, knitr, rmarkdown, htmltools, shiny (>=
1.5.0), testthat, vdiffr, svglite, jsonlite, curl
lattice, stats, withr, sysfonts, showtext, Cairo,
systemfonts, ragg, knitr, rmarkdown, htmltools, shiny (>=
1.5.0), bslib, testthat, gganimate, vdiffr (>= 1.0.0), svglite,
jsonlite, curl
lattice, stats, withr, sysfonts, showtext, Cairo,
systemfonts, ragg, knitr, rmarkdown, htmltools, shiny (>=
1.5.0), bslib, testthat, gganimate, vdiffr, svglite, jsonlite,
curl
assertthat, covr, huge, igraph, inline, knitr, networkD3,
proxy, rmarkdown, RcppArmadillo, Rtsne, testthat, vegan,
viridis,
testthat (>= 2.1.0), covr, ggplot2, modeldata
covr, ggplot2, modeldata, testthat (>= 2.1.0)
covr, ggplot2, modeldata, testthat (>= 3.0.0)
covr, testthat (>= 2.1.0), knitr, rmarkdown, ggplot2, scales,
stringi, ggrepel, fixerapi
RadioSonde, knitr, rmarkdown, testthat (>= 2.0.0), covr
testthat, withr, knitr, rmarkdown, Lahman (>= 3.0.1),
microbenchmark
testthat, withr, knitr (>= 1.5.32), rmarkdown, Lahman (>=
3.0.1), microbenchmark
testthat, withr, knitr (>= 1.5.32), rmarkdown, nycflights13,
microbenchmark
dplyr, knitr (>= 1.5.32), microbenchmark, nycflights13,
testthat, rmarkdown, withr
covr, dplyr, knitr (>= 1.5.32), microbenchmark, nycflights13,
testthat, rmarkdown, withr
covr, dplyr, import, knitr (>= 1.5.32), microbenchmark,
mockr, nycflights13, testthat, rmarkdown, withr
covr, dplyr, import, knitr (>= 1.5.32), microbenchmark,
mockr, nycflights13, rmarkdown, testthat, withr
bench, covr, dplyr, htmltools, import, knitr, mockr,
nycflights13, rmarkdown, testthat, withr
bench, bit64, blob, covr, dplyr, evaluate, hms, htmltools,
import, knitr, mockr, nycflights13, purrr, rmarkdown, testthat
(>= 2.1.0), tidyr, withr
bench, bit64, blob, covr, dplyr, evaluate, formattable, hms,
htmltools, import, knitr, lubridate, mockr, nycflights13,
purrr, rmarkdown, testthat (>= 2.1.0), tidyr, withr
bench, bit64, blob, covr, DiagrammeR, dplyr, evaluate,
formattable, ggplot2, hms, htmltools, import, knitr, lubridate,
mockr, nycflights13, purrr, rmarkdown, testthat (>= 3.0.1),
tidyr, withr
bench, bit64, blob, cli, covr, crayon (>= 1.3.4), DiagrammeR,
dplyr, evaluate, formattable, ggplot2, hms, htmltools, import,
knitr, lubridate, mockr, nycflights13, purrr, rmarkdown,
testthat (>= 3.0.2), tidyr, withr
bench, bit64, blob, cli, covr, crayon (>= 1.3.4), DiagrammeR,
dplyr, evaluate, formattable, ggplot2, hms, htmltools, knitr,
lubridate, mockr, nycflights13, purrr, rmarkdown, testthat (>=
3.0.2), tidyr, withr
bench, bit64, blob, brio, callr, cli, covr, crayon (>=
1.3.4), DiagrammeR, dplyr, evaluate, formattable, ggplot2, hms,
htmltools, knitr, lubridate, mockr, nycflights13, pkgbuild,
pkgload, purrr, rmarkdown, stringi, testthat (>= 3.0.2), tidyr,
withr
rmarkdown, survival, tidyverse, testthat (>= 2.1.0), covr
rmarkdown, survival, testthat (>= 2.1.0), covr
broom, covr, gapminder, knitr, testthat, tidyr
broom, covr, gapminder, knitr, testthat, tidyr (>= 1.0.0)
broom, covr, gapminder, knitr, rmarkdown, testthat, tidyr (>=
1.0.0)
covr, jsonlite, knitr, rmarkdown, spelling, testthat (>=
3.1.4)
testthat, combiter, dplyr, tidyr, reshape2, ggplot2
rmarkdown, knitr, tidyverse (>= 1.3.0), tinytest
knitr, rmarkdown, testthat (>= 3.0.0), tidyverse (>= 1.3.0)
Rcpp, knitr, rmarkdown, minidown, RcppSpdlog
conflicted, gghighlight, knitr, lubridate, rmarkdown,
tidyverse,
rmarkdown, knitr, testthat (>= 3.0.0), ggplot2, readr,
forcats
testthat, BiocManager, knitr, qpdf, covr
testthat, BiocManager, knitr, rmarkdown, qpdf, covr, roxygen2
spelling, testthat, vdiffr, BiocManager, knitr, rmarkdown,
qpdf, covr, roxygen2
spelling, testthat, vdiffr, BiocManager, knitr, rmarkdown,
qpdf, covr, roxygen2, forcats, ggplot2
covr, devtools, knitr, MplusAutomation, rmarkdown, roxygen2,
testthat,
covr, devtools, knitr, MplusAutomation, rmarkdown, roxygen2,
testthat, parallel
covr, devtools, knitr, MplusAutomation, parallel, rmarkdown,
roxygen2, testthat
knitr, missForest, parallel, rmarkdown, testthat, tidyverse
knitr, missForest, parallel, rmarkdown, testthat
knitr, lme4, missForest, parallel, pillar, rmarkdown,
testthat
knitr, markdown, roxygen2, rmarkdown, testthat
testthat (>= 2.1.0), knitr, rmarkdown, dplyr, redcapAPI,
janitor
testthat (>= 2.1.0), knitr, rmarkdown, redcapAPI
knitr, redcapAPI, rmarkdown, testthat (>= 2.1.0)
httptest, knitr, rmarkdown, covr, testthat
testthat, knitr, rmarkdown, dplyr, stringr, covr
testthat, knitr, rmarkdown, dplyr, stringr, covr, tidyLPA
testthat, knitr, rmarkdown, dplyr, stringr, covr, tidyLPA,
poLCA, umx
testthat, knitr, rmarkdown, dplyr, stringr, covr, tidyLPA,
poLCA, umx, mclust
testthat (>= 2.1.0), knitr, rgeos, rmarkdown
knitr, rgeos, rmarkdown, testthat (>= 2.1.0), covr, spelling
covr, knitr, rgeos, rmarkdown, spelling, testthat (>= 2.1.0)
covr, knitr, rgdal, rgeos, rmarkdown, spelling, testthat (>=
2.1.0)
covr, knitr, nlme, rgeos, rmarkdown, spelling, stringi,
testthat (>= 2.1.0), usethis, waldo
knitr, import, testthat, vdiffr, rstan (>= 2.17.0), runjags,
rjags, jagsUI, rstanarm (>= 2.17.2), rstantools, emmeans, broom
(>= 0.4.3), dotwhisker, MCMCglmm, bayesplot, modelr, brms (>=
2.4.0), cowplot, covr, gdtools, rmarkdown, bindrcpp
knitr, testthat, vdiffr, svglite, rstan (>= 2.17.0), runjags,
rjags, jagsUI, rstanarm (>= 2.17.2), rstantools, emmeans, broom
(>= 0.4.3), dotwhisker, MCMCglmm, bayesplot, modelr, brms (>=
2.4.3), cowplot, covr, gdtools, rmarkdown, ggrepel, bindrcpp
knitr, testthat, vdiffr (>= 0.3.0), svglite, rstan (>=
2.17.0), runjags, rjags, jagsUI, rstanarm (>= 2.17.2), emmeans,
broom (>= 0.4.3), dotwhisker, MCMCglmm, bayesplot, modelr, brms
(>= 2.4.3), cowplot, ggridges, covr, gdtools, rmarkdown,
ggrepel, bindrcpp, RColorBrewer, gganimate, gifski, png,
transformr
knitr, testthat, vdiffr (>= 0.3.0), svglite, rstan (>=
2.17.0), runjags, rjags, jagsUI, rstanarm (>= 2.18.2), emmeans,
broom (>= 0.4.3), dotwhisker, MCMCglmm, bayesplot, modelr, brms
(>= 2.9.0), cowplot, ggridges, covr, gdtools, rmarkdown,
ggrepel, bindrcpp, RColorBrewer, gganimate, gifski, png,
transformr
knitr, testthat, vdiffr (>= 0.3.0), svglite, ggstance (>=
0.3.2), rstan (>= 2.17.0), runjags, rjags, jagsUI, rstanarm (>=
2.19.2), emmeans, broom (>= 0.4.3), dotwhisker, MCMCglmm,
bayesplot, modelr, brms (>= 2.11.1), cowplot, covr, gdtools,
rmarkdown, ggrepel, bindrcpp, RColorBrewer, gganimate, gifski,
png, transformr
knitr, testthat, vdiffr (>= 0.3.0), svglite, rstan (>=
2.17.0), runjags, rjags, jagsUI, rstanarm (>= 2.19.2), emmeans,
broom (>= 0.4.3), dotwhisker, MCMCglmm, bayesplot, modelr, brms
(>= 2.13.0), cowplot, covr, gdtools, rmarkdown, ggrepel,
bindrcpp, RColorBrewer, gganimate, gifski, png, pkgdown,
transformr
knitr, testthat, purrr (>= 0.2.3), forcats, vdiffr (>=
1.0.0), svglite, rstan (>= 2.17.0), rstantools (>= 2.1.0),
runjags, rjags, jagsUI, rstanarm (>= 2.19.2), emmeans, broom
(>= 0.4.3), dotwhisker, MCMCglmm, bayesplot, modelr, brms (>=
2.15.0), cowplot, covr, gdtools, rmarkdown, ggrepel, bindrcpp,
RColorBrewer, gganimate, gifski, png, pkgdown, distributional,
transformr
knitr, testthat, purrr (>= 0.2.3), forcats, vdiffr (>=
1.0.0), svglite, rstan (>= 2.17.0), rstantools (>= 2.1.0),
runjags, rjags, jagsUI, rstanarm (>= 2.19.2), emmeans, broom
(>= 0.4.3), dotwhisker, MCMCglmm, bayesplot, modelr, brms (>=
2.16.0), cowplot, covr, gdtools, rmarkdown, ggrepel, bindrcpp,
RColorBrewer, gganimate, gifski, png, pkgdown, distributional,
transformr
knitr, rmarkdown, arulesCBA, embed, woeBinning, recipes
broom, ggplot2, ggforce, knitr, rmarkdown
broom, ggplot2, ggforce, knitr, rmarkdown, spelling
cli, covr, docxtractr, DT, knitr, miniUI, plotly, readr,
readxl, rmarkdown, rstudioapi, shiny, shinytest, stringdist,
tabulizer, testthat (>= 2.1.0), tidyxl, xlsx, XML
knitr, rmarkdown, palmerpenguins, tidyverse, covr
rmarkdown, palmerpenguins, tidyverse, dplyr, covr
cluster, ClusterR, covr, knitr, modeldata (>= 1.0.0),
RcppHungarian, recipes (>= 1.0.0), rmarkdown, testthat (>=
3.0.0), workflows (>= 1.1.2)
covr (>= 3.5.1), ggsurvfit, knitr (>= 1.36), spelling,
testthat (>= 3.1.0)
covr, knitr, rmarkdown, testthat (>= 2.1.0), tidyselect
remotes, magrittr, tidyr, dplyr, testthat (>= 2.1.0), covr
arm, bestglm, glmnet, hfr, kableExtra, knitr, lme4, lmtest,
lubridate, mboost, MSwM, pls, quantreg, sandwich, shrinkTVP,
tidyverse, rmarkdown
arm, bestglm, BMS, CORElearn, e1071, gets, glmnet, hfr,
kableExtra, knitr, lme4, lmtest, lubridate, mboost, mRMRe,
MSwM, pls, quantreg, randomForest, sandwich, shrinkTVP,
tidyverse, rmarkdown
knitr, rmarkdown, nycflights13, tidyr, ggplot2
knitr, rmarkdown, nycflights13, pryr, tidyr
knitr, rmarkdown, nycflights13, pryr, tidyr, ggplot2
knitr, rmarkdown, nycflights13, pryr, tidyr, ggplot2, dplyr,
bench, testthat
knitr, rmarkdown, ggplot2, ggrepel, maps, testthat (>= 2.1.0)
knitr, DT, rmarkdown, ggplot2, ggrepel, maps, testthat (>=
2.1.0)
knitr, rmarkdown, ggplot2, ggrepel, maps, testthat (>= 3.0.2)
network, data.tree, ape, graph, methods, testthat, covr
network, data.tree, ape, graph, methods, testthat, covr,
seriation, netrankr, influenceR, NetSwan
ggplot2, knitr, rmarkdown, testthat (>= 3.0.0), covr
testthat (>= 1.0.2), data.table (>= 1.10), magrittr
knitr, testthat, ggplot2, rmarkdown, forcats, wordcloud,
viridis, listviewer, igraph, RColorBrewer, covr, lubridate,
rlang
knitr, testthat, ggplot2, rmarkdown, forcats, wordcloud,
viridis, listviewer, igraph, RColorBrewer, covr, vctrs,
lubridate
knitr, testthat, ggplot2, rmarkdown, forcats, wordcloud,
viridis, listviewer, igraph, RColorBrewer, covr, vctrs,
lubridate, rprojroot
knitr, parallel, quanteda, testthat, tm, spelling
covr, ggplot2, janeaustenr, knitr, rmarkdown, stringr,
testthat (>= 2.1.0), tidytext
testthat, covr, forcats, knitr, rmarkdown, bench
covr, knitr, modeldata (>= 0.0.1), rmarkdown, testthat, xml2
covr, glue, knitr, rmarkdown, testthat, xml2
covr, glue, knitr, rmarkdown, testthat (>= 3.0.0), xml2
ggplot2, knitr, memoise, ncdump, palr, raster, rmarkdown,
testthat, covr
ggplot2, knitr, rmarkdown, testthat, covr, cubelyr
testthat, knitr, rmarkdown, vegan, patchwork, forcats, vdiffr
europepmc, tidytext, rmarkdown, knitr, testthat, covr
knitr, testthat, covr, parsnip, yardstick, rmarkdown
covr, knitr, parsnip, rmarkdown, testthat (>= 3.0.0),
yardstick
dbplyr, testthat, randomForest, knitr, rmarkdown,
nycflights13, RSQLite, methods, DBI
dbplyr, testthat, randomForest, ranger, knitr, rmarkdown,
nycflights13, RSQLite, methods, DBI
dbplyr, testthat, randomForest, ranger, earth, rmarkdown,
nycflights13, RSQLite, methods, DBI, covr
dbplyr, testthat (>= 2.1.0), randomForest, ranger, earth,
rmarkdown, nycflights13, RSQLite, methods, DBI, covr, xgboost,
Cubist, mlbench, partykit, yaml, parsnip
dbplyr, testthat (>= 2.1.0), randomForest, ranger, earth (>=
5.1.2), rmarkdown, nycflights13, RSQLite, methods, DBI, covr,
xgboost, Cubist, mlbench, partykit, yaml, parsnip, modeldata
covr, Cubist, DBI, dbplyr, earth (>= 5.1.2), methods,
mlbench, modeldata, nycflights13, parsnip, partykit,
randomForest, ranger, rmarkdown, RSQLite, testthat (>= 3.0.0),
xgboost, yaml
tidyverse, alphavantager, broom, knitr, rmarkdown, testthat,
tibbletime, scales, Rblpapi, readxl
knitr, rmarkdown, testthat, tibbletime (>= 0.1.1), forcats,
Rblpapi (>= 0.3.6), XLConnect (>= 0.2-13)
alphavantager, broom, knitr, rmarkdown, testthat, tibbletime,
scales, Rblpapi, XLConnect
alphavantager, broom, knitr, rmarkdown, testthat, tibbletime,
scales, Rblpapi, readxl
tidyverse, forcats, broom, knitr, rmarkdown, testthat (>=
2.1.0), tibbletime, scales, Rblpapi, readxl
tidyverse, tibbletime, forcats, broom, knitr, rmarkdown,
testthat (>= 2.1.0), scales, Rblpapi, readxl
tidyverse, tibbletime, forcats, broom, knitr, rmarkdown,
testthat (>= 2.1.0), scales, Rblpapi, readxl, covr, janitor
tidyverse, tibbletime, forcats, broom, knitr, rmarkdown,
testthat (>= 2.1.0), scales, Rblpapi, covr, janitor
knitr, testthat, data.table, covr, gapminder
knitr, testthat, data.table, covr, gapminder, rmarkdown
knitr, testthat, covr, gapminder, rmarkdown
covr, gapminder, knitr, rmarkdown, testthat
covr, jsonlite, knitr, repurrrsive (>= 1.0.0), rmarkdown,
readr, testthat (>= 2.1.0)
covr, data.table, jsonlite, knitr, readr, repurrrsive (>=
1.0.0), rmarkdown, testthat (>= 3.0.0)
knitr, rmarkdown, tibble, testthat (>= 3.0.0)
covr, crayon, dplyr, knitr, magrittr, rmarkdown, testthat (>=
2.3.0), tibble (>= 2.1.3), withr
covr, crayon, dplyr, knitr, magrittr, rmarkdown, testthat (>=
3.1.1), tibble (>= 2.1.3), withr
covr, crayon, dplyr, knitr, magrittr, rmarkdown, stringr,
testthat (>= 3.1.1), tibble (>= 2.1.3)
testthat, knitr, GGally, markdown, SingleCellSignalR,
dittoSeq
BiocStyle, testthat, knitr, GGally, markdown,
SingleCellSignalR
BiocStyle, testthat, knitr, GGally, markdown,
SingleCellSignalR, dittoSeq
testthat, knitr, GGally, markdown, SingleR
ape (>= 5.3), bioseq (>= 0.1.2), Biostrings (>= 2.52.0),
covr, knitr, lifecycle, purrr, seqinr (>= 3.4-5), spelling,
rmarkdown, testthat (>= 2.1.0), withr (>= 2.2.0)
ape (>= 5.3), bioseq (>= 0.1.2), Biostrings (>= 2.52.0),
covr, knitr, lifecycle, purrr, seqinr (>= 3.4-5), spelling,
rmarkdown, testthat (>= 3.0.0), withr (>= 2.2.0), rlang, mockr
knitr, rmarkdown, testthat, BayesFactor, lme4, lmerTest
testthat (>= 2.1.0), bit64, knitr, rmarkdown
testthat (>= 2.1.0), bit64, knitr, rmarkdown, crayon
beepr, covr, ggplot2, ggraph, knitr, longurl, readr,
rmarkdown, testthat, tibble, tidygraph, urltools, vcr (>= 1.0)
beepr, covr, ggplot2, ggraph, knitr, longurl, readr,
rmarkdown, testthat, tibble, tidygraph, urltools, vcr (>= 1.2)
isoband, knitr, lifecycle, maptiles, rmarkdown, s2, testthat
(>= 3.0.0), vdiffr
isoband, knitr, lifecycle, maptiles, rmarkdown, s2, testthat
(>= 3.0.0), tidyverse, vdiffr
readr, tidyr, XML, tm, quanteda, knitr, rmarkdown, ggplot2,
reshape2, wordcloud, topicmodels, NLP, scales, gutenbergr,
testthat, vdiffr, mallet, stm, data.table, broom, textdata
readr, tidyr, XML, tm, quanteda, knitr, rmarkdown, ggplot2,
reshape2, wordcloud, topicmodels, NLP, scales, gutenbergr,
testthat (>= 2.1.0), vdiffr, mallet, stm, data.table, broom,
textdata, covr
readr, tidyr, XML, tm, quanteda, knitr, rmarkdown, ggplot2,
reshape2, wordcloud, topicmodels, NLP, scales, gutenbergr,
testthat (>= 2.1.0), vdiffr, mallet, stm, data.table, broom,
textdata, stopwords, covr
readr, tidyr, XML, tm, quanteda, knitr, rmarkdown, ggplot2,
reshape2, wordcloud, topicmodels, NLP, scales, testthat (>=
2.1.0), vdiffr, mallet, stm, data.table, broom, textdata,
stopwords, covr
broom, covr, data.table, ggplot2, knitr, mallet, NLP,
quanteda, readr, reshape2, rmarkdown, scales, stm, stopwords,
testthat (>= 2.1.0), textdata, tidyr, tm, topicmodels, vdiffr,
wordcloud, XML
broom, covr, data.table, ggplot2, knitr, mallet, NLP,
quanteda, readr, reshape2, rmarkdown, scales, stm, stopwords,
testthat (>= 2.1.0), textdata, tidyr, tm, topicmodels, vdiffr,
wordcloud
testthat, knitr, rmarkdown, ggplot2, scales
testthat, knitr, markdown, rmarkdown, ggplot2, scales
testthat, knitr, markdown, rmarkdown, ggplot2, scales,
lubridate
testthat, knitr, markdown, rmarkdown, ggplot2, scales,
lubridate, leaflet
knitr, rmarkdown, BART, ggplot2, testthat (>= 3.0.0), withr
ggtree, knitr, prettydoc, testthat, treeio
ggtree, knitr, rmarkdown, prettydoc, testthat, treeio
ggtree, knitr, rmarkdown, prettydoc, testthat, treeio,
pillar, utils
knitr, rmarkdown, prettydoc, testthat, pillar, utils
knitr, rmarkdown, prettydoc, testthat, utils
testthat (>= 2.1.0), covr, pkgdown, tibble
covr, feather, glue, knitr, rmarkdown, testthat
cluster, classInt, KernSmooth, ggplot2, shiny, remotes, vpc,
knitr, rmarkdown
cluster, KernSmooth, knitr, shiny, remotes, vpc, rmarkdown,
testthat (>= 2.1.0)
cluster, dplyr, KernSmooth, knitr, shiny, remotes, vpc,
rmarkdown, testthat (>= 2.1.0)
spelling, roxygen2, testthat (>= 3.0.0), knitr, rmarkdown
spelling, roxygen2, testthat (>= 3.0.0), knitr, rmarkdown,
odbc
spelling, roxygen2, testthat (>= 3.0.0), knitr, rmarkdown,
odbc, assertthat
testthat, here, knitr, rmarkdown, readxl, dplyr, tidyr,
purrr, ggplot2, cellranger, rlang
testthat, here, knitr, rmarkdown, readxl, dplyr, tidyr,
purrr, tibble, ggplot2, cellranger, openxlsx, rlang
acs, testthat, dplyr, ggplot2, ggthemes, leaflet, knitr
acs, testthat, ggplot2, ggthemes, leaflet, knitr
acs, testthat, ggplot2, ggthemes, leaflet, knitr, rgeos
testthat, ggplot2, ggthemes, leaflet, knitr, rgeos
testthat, ggplot2, ggthemes, leaflet, knitr, rgeos,
tidycensus
testthat (>= 0.8.1), evaluate, stringr, ggplot2, maps, knitr,
crayon, formatR
testthat (>= 0.8.1), evaluate, stringr, ggplot2, maps, knitr,
crayon
evaluate, formatR, ggplot2, knitr, maps, stringr, testthat
(>= 0.8.1), withr
evaluate, formatR, ggplot2, knitr, lattice, maps, scales,
stringr, testthat (>= 0.8.1), withr
testthat (>= 0.4), evaluate, stringr, ggplot2
testthat (>= 0.4), evaluate, stringr, ggplot2, maps
testthat (>= 0.6), evaluate, stringr, ggplot2, maps
testthat (>= 0.8.1), evaluate, stringr, ggplot2, maps, knitr
tinytest, rmarkdown, knitr, minidown, curl, bit64, Matrix,
palmerpenguins, nycflights13, data.table, tibble
tinytest, simplermarkdown, curl, bit64, Matrix,
palmerpenguins, nycflights13, data.table, tibble
tinytest, rmarkdown, knitr, BiocStyle, curl, bit64
tinytest, rmarkdown, knitr, minidown, curl, bit64, Matrix
tinytest, rmarkdown, knitr, minidown, curl, bit64, Matrix,
palmerpenguins
rgdal, maptools, rgeos, rmapshaper, knitr, rmarkdown, leaflet
(>= 1.0.2.9003), cleangeo
dplyr, tidyr, knitr, rmarkdown, leaflet (>= 1.1.0),
testthat, knitr, rmarkdown, lintr, covr, jpeg, bmp
testthat, knitr, rmarkdown, lintr, covr, jpeg, bmp, leaflet
testthat, knitr, rmarkdown, covr, jpeg, bmp, leaflet
RUnit, robustbase, xts, PerformanceAnalytics, fTrading
knitr, rmarkdown, testthat, stringr, tidyverse
broom, forcats, knitr, rmarkdown, scales, stringr, testthat,
tidyverse, tidyquant
openxlsx, rstudioapi, dygraphs, rmarkdown, knitr
broom, forcats, knitr, rmarkdown, robets, scales, stringr,
testthat, tidyverse, tidyquant
broom, forcats, knitr, rmarkdown, robets, scales, stringr,
testthat, tidyverse, tidyquant, timeSeries, fracdiff, timeDate,
tseries
broom, forcats, knitr, rmarkdown, robets, scales, stringr,
testthat, tidyverse, tidyquant, timeSeries
tidyverse, broom, forcats, forecast, knitr, rmarkdown,
robets, scales, stringr, testthat, tidyquant, fracdiff,
timeDate, timeSeries, tseries
workflows, parsnip, glmnet, rsample, yardstick, tidyverse,
broom, forcats, forecast, knitr, rmarkdown, robets, scales,
stringr, testthat, tidyquant, fracdiff, timeDate, timeSeries,
tseries, roxygen2
tidyquant, workflows, parsnip, yardstick, tidyverse, knitr,
rmarkdown, robets, scales, testthat, fracdiff, timeSeries,
tseries, roxygen2
tidyquant, workflows, parsnip, tune, yardstick, tidyverse,
knitr, rmarkdown, robets, broom, scales, testthat, fracdiff,
timeSeries, tseries, roxygen2
tidyquant, tidymodels, modeltime, workflows, parsnip, tune,
yardstick, tidyverse, knitr, rmarkdown, robets, broom, scales,
testthat, fracdiff, timeSeries, tseries, roxygen2
tidyquant, tidymodels, modeltime, workflows, parsnip, tune,
yardstick, tidyverse, knitr, rmarkdown, robets, broom, scales,
testthat, fracdiff, timeSeries, tseries, roxygen2, covr
tidyquant, tidymodels, modeltime, workflows, parsnip, tune,
yardstick, tidyverse, knitr, rmarkdown, robets, broom, scales,
testthat, fracdiff, timeSeries, tseries, trelliscopejs,
roxygen2, covr
knitr (>= 1.7), testthat (>= 0.9.1), tibble
knitr (>= 1.7), testthat (>= 0.9.1), tibble, shinydisconnect
lubridate, testthat (>= 0.9.1), shinydisconnect
knitr, rmarkdown, covr, testthat (>= 3.0.0), withr
testthat, AnnoProbe, GEOquery, Biobase, VennDiagram,
FactoMineR, factoextra, knitr, rmarkdown, cowplot, ggpubr,
ggplotify, tidyr, labeling, Rtsne, scatterplot3d
testthat, AnnoProbe, GEOquery, Biobase, VennDiagram,
FactoMineR, factoextra, knitr, rmarkdown, cowplot, ggpubr,
ggplotify, tidyr, labeling, Rtsne, scatterplot3d,
ComplexHeatmap, circlize
testthat, vctrs, dplyr, knitr, rmarkdown
testthat, covr, vctrs, dplyr, knitr, rmarkdown
knitr, rappdirs, rmarkdown, testthat (>= 3.0.0)
knitr, sna, mcclust, SMFilter, rmarkdown, spelling, testthat
(>= 3.0.0)
knitr, meta, rmarkdown, testthat (>= 3.0.0)
rstantools (>= 2.1.1), RcppParallel (>= 5.0.1), callr, spam,
spdep, maptools (>= 1.0.2), gridExtra (>= 2.3), R.rsp, rgeos,
shinythemes, shinyFeedback, shinybusy, shinyWidgets, shinyjs,
bayesplot, sp, loo (>= 2.3.1)
rstantools (>= 2.1.1), RcppParallel (>= 5.0.1), callr, spam,
spdep, maptools (>= 1.0.2), gridExtra (>= 2.3), R.rsp, rgeos,
shinythemes, shinyFeedback, shinybusy, shinyWidgets, shinyjs,
bayesplot, loo (>= 2.3.1)
testthat, knitr, rmarkdown, microbenchmark, deSolve
filehash, proxy, Rgraphviz, Rmpi, RWeka, snow, Snowball, XML
filehash, proxy, Rcampdf, Rgraphviz, Rpoppler, SnowballC, XML
filehash, proxy, Rgraphviz, SnowballC, XML
filehash, methods, Rcampdf, Rgraphviz, Rpoppler, SnowballC,
tm.lexicon.GeneralInquirer, XML
filehash, Rcampdf, Rgraphviz, Rpoppler, SnowballC,
tm.lexicon.GeneralInquirer, XML
antiword, filehash, methods, pdftools, Rcampdf, Rgraphviz,
Rpoppler, SnowballC, testthat, tm.lexicon.GeneralInquirer
rmarkdown, knitr, png, cartogram, ggplot2, dplyr, tidyr
rmarkdown, knitr, OpenStreetMap, png, ggplot2, dplyr, tidyr
lwgeom (>= 0.1-4), rmapshaper, rmarkdown, knitr, png,
cartogram, osmdata, ggplot2, dplyr, tidyr, testthat, covr
rmapshaper, rmarkdown, knitr, png, cartogram, osmdata,
ggplot2, dplyr, tidyr, shiny, testthat, covr
lwgeom (>= 0.1-4), rmapshaper, rmarkdown, knitr, png,
cartogram, osmdata, ggplot2, dplyr, tidyr, shiny, testthat,
covr
rmapshaper, rmarkdown, knitr, png, cartogram, osmdata,
ggplot2, dplyr, tidyr, shiny, testthat, covr, av, gifski
rmapshaper, rmarkdown, knitr, png, cartogram, osmdata,
ggplot2, dplyr, tidyr, shiny, testthat, covr, av, gifski, s2
tmap (>= 1.8-1), OpenStreetMap, png, shiny, shinyjs
tmap (>= 1.10), OpenStreetMap, png, shiny, shinyjs
tmap (>= 2.0), rmapshaper, osmdata, OpenStreetMap, png,
shiny, shinyjs
tmap (>= 2.2), rmapshaper, osmdata, OpenStreetMap, png,
shiny, shinyjs
tmap (>= 3.0), rmapshaper, osmdata, OpenStreetMap, raster,
png, shiny, shinyjs
curl, testthat (>= 2.1.0), knitr, rmarkdown
doParallel, foreach, igraph, knitr, locfit, matrixStats,
RUnit
roxygen2, eRm, knitr, prettydoc, psychotools, testthat,
rmarkdown, dexterMST
covr, knitr, rmarkdown, spelling, testthat (>= 3.0.0), tictoc
covr, DBI, knitr, rmarkdown, spelling, testthat (>= 3.0.0),
tictoc
testthat (>= 0.9.1-1), tm, doParallel, ggnetwork
apexcharter, knitr, rmarkdown, scales, tinytest
knitr, rmarkdown, testthat, AER, censReg, dplyr, ggplot2,
modelsummary, bookdown
knitr, rmarkdown, testthat, AER, censReg, dplyr, ggplot2,
modelsummary, bookdown, cmtest
covr, knitr, rmarkdown, stopwords (>= 0.9.0), testthat
knitr, rmarkdown, RColorBrewer, ggplot2, geojsonsf,
cancensus, tidycensus, spelling, readxl, scales
knitr, rmarkdown, RColorBrewer, ggplot2, cancensus,
tidycensus, spelling, readxl, scales
testthat, ggplot2, knitr, rmarkdown, pander, XML, httr, RCurl
knitr, rmarkdown, stm, testthat (>= 2.1.0)
lasso2, lattice, lda, OAIHarvester, SnowballC, XML
lattice, lda, OAIHarvester, Snowball, XML
lasso2, lattice, lda, OAIHarvester, Snowball, XML
lasso2, lattice, lda, OAIHarvester, SnowballC, XML,
corpus.JSS.papers
lasso2, lattice, lda, OAIHarvester, SnowballC,
corpus.JSS.papers
udpipe (>= 0.8.4), word2vec, uwot, tinytest, textplot (>=
0.2.0), ggrepel, ggalt
testthat (>= 2.1.0), covr, knitr, rmarkdown, bit64, magrittr,
glue
testthat (>= 2.1.0), covr, knitr, rmarkdown, magrittr, glue
testthat (>= 2.1.0), covr, knitr, rmarkdown, glue,
palmerpenguins
testthat (>= 3.0.0), covr, knitr, rmarkdown, glue,
palmerpenguins
testthat (>= 3.0.0), covr, knitr, rmarkdown, glue,
palmerpenguins, mvtnorm, numDeriv
testthat (>= 3.0.0), covr, knitr, rmarkdown, glue,
palmerpenguins, mvtnorm, numDeriv, katex
testthat (>= 3.0.0), covr, knitr (>= 1.36), rmarkdown, glue,
palmerpenguins, mvtnorm, numDeriv, katex
testthat, monitoR, tuneR, knitr, rmarkdown, stringr, numbers,
purrr, scales, httr, viridis
testthat, monitoR, tuneR, knitr, rmarkdown, stringr, numbers,
purrr, scales, httr, viridis, av
testthat, covr, caret, glmnet, randomForest, knitr, rmarkdown
toscaData, testthat (>= 2.0.0), knitr (>= 1.20), devtools (>=
1.13), rmarkdown (>= 1.9)
rggobi, TeachingDemos, ash, testthat, colorspace
rggobi, TeachingDemos, ash, testthat, colorspace, ggplot2
rggobi, TeachingDemos, ash, testthat, colorspace, ggplot2,
reshape2
TeachingDemos, ash, testthat, colorspace, ggplot2, reshape2
TeachingDemos, ash, energy, testthat, colorspace, ggplot2,
mgcv, gifski, geozoo, knitr, rmarkdown, tidyr, covr
rmarkdown, testthat, knitr, here, tcpl, openxlsx
rmarkdown, testthat, knitr, here, tcpl, openxlsx, covr
ggplot2, knitr, parallel, rmarkdown, testthat, magrittr,
pander, covr
DBI, RMySQL, rmongodb, ggplot2, knitr, parallel, rmarkdown,
testthat, magrittr, pander, covr
DBI, RMySQL, mongolite (>= 0.9.0), jsonlite (>= 1.1),
ggplot2, knitr, parallel, rmarkdown, testthat, magrittr,
pander, covr
rmarkdown, knitr, testthat (>= 3.0.0), covr, DBI
knitr, rmarkdown, testthat, plotly, devtools,
ape, geiger, ggplot2, hunspell, knitr, phangorn, rbenchmark,
reshape2, rmarkdown, spelling, testthat
ape, geiger, ggplot2, hunspell, knitr, phangorn, rbenchmark,
reshape2, rmarkdown, spelling, stringr, testthat
ape, geiger, ggplot2, hunspell, knitr, phangorn, rbenchmark,
reshape2, rmarkdown, spelling, stringr, testthat (>= 2.1.0)
ape, ggplot2, hunspell, knitr, phangorn, rbenchmark,
reshape2, rmarkdown, spelling, stringr, testthat (>= 2.1.0)
ape, ggplot2, hunspell, knitr, markdown, phangorn, rappdirs,
rbenchmark, reshape2, rmarkdown, spelling, stringr, testthat
(>= 2.1.0)
adehabitatLT, doParallel, knitr, maps, Matching, move,
parallel, rmarkdown, tinytest
adehabitatLT, doParallel, knitr, maps, Matching, move,
parallel, rmarkdown, tinytest, rgeos, rgdal (>= 1.5-0)
adehabitatLT, doParallel, knitr, parallel, rmarkdown,
tinytest
readr, dplyr, ggplot2, knitr, rmarkdown, adehabitatLT, move,
moveVis, ctmm, moveHMM, mapproj
covr, devtools, gargle, knitr, pagedown, sodium, testthat (>=
3.0.0), vcr
plyr, XML, RSQLite, parallel, ggmap, scam, raster, testthat,
fda
proto, png, httr, knitr, MASS, MEMSS, mlmRev, dplyr,
gridExtra, rstudioapi, switchr (>= 0.12.99)
proto, png, httr, knitr, MASS, MEMSS, mlmRev, dplyr,
gridExtra, RSelenium, rstudioapi
proto, png, httr, MASS, MEMSS, mlmRev, dplyr, gridExtra,
RSelenium, rstudioapi
proto, png, httr, knitr, MASS, MEMSS, mlmRev, dplyr,
gridExtra, rstudioapi
testthat (>= 3.0.1), covr, knitr, rmarkdown, animation,
mmand, loder, divest, jsonlite, yaml, testthat
knitr, rmarkdown, testthat, styler, pkgdown, vcr
knitr, rmarkdown, testthat, styler, pkgdown, vcr, covr
knitr, rmarkdown, DT, testthat (>= 2.1.0), vcr, covr
knitr, rmarkdown, tibble, testthat (>= 2.1.0), vcr, covr,
arrow
knitr, rmarkdown, tibble, testthat (>= 2.1.0), vcr, covr
covr, testthat (>= 2.1.0), dplyr, tibble, spelling
covr, testthat (>= 2.1.0), dplyr, tibble, tidyr, spelling
roxygen2 (>= 5.0.1), knitr, testthat, plyr, covr
roxygen2 (>= 6.0.1), knitr, testthat, dplyr, plyr
rgl, OpenStreetMap, RCurl, rjson, adehabitatLT
rgdal, rgeos, rgl, OpenStreetMap, RCurl, rjson, adehabitatLT,
xts
rgdal, rgeos, OpenStreetMap, RCurl, rjson, adehabitatLT, xts,
knitr, rgl, forecast, MASS , spatstat, taxidata
rgdal, rgeos, OpenStreetMap, RCurl, rjson, adehabitatLT, xts,
knitr, rgl, forecast, MASS, spatstat, taxidata
rgdal, rgeos, OpenStreetMap, RCurl, rjson, adehabitatLT, xts,
knitr, rgl, forecast, MASS, spatstat (>= 2.0-1), spatstat.core,
spatstat.geom, taxidata
rgdal, rgeos, OpenStreetMap, RCurl, rjson, adehabitatLT, xts,
knitr, rgl, forecast, MASS, spatstat (>= 2.0-1),
spatstat.explore, spatstat.geom, taxidata
knitr, rmarkdown, testthat, BH, readr, tcltk
knitr, rmarkdown, testthat, BH, readr, tcltk, sp, MASS
MASS, TH.data, trtf, mlbench, knitr, quantreg, ordinal,
colorspace, ATR
MASS, TH.data, trtf (>= 0.3-3), mlbench, knitr, quantreg,
ordinal, colorspace, ATR
MASS, TH.data, trtf (>= 0.3-3), mlbench, knitr, quantreg,
colorspace, ATR, lme4, merDeriv, SparseGrid, alabama, numDeriv,
gridExtra, lattice, latticeExtra, HSAUR3, mvtnorm, ordinalCont,
coxme, glmmsr, mlt.docreg, ordinal
MASS, TH.data, trtf (>= 0.3-3), mlbench, knitr, quantreg,
colorspace, ATR, lme4, merDeriv, SparseGrid, alabama, numDeriv,
gridExtra, lattice, latticeExtra, HSAUR3, mvtnorm, ordinalCont,
coxme, glmmsr, mlt.docreg, ordinal, coin, asht
MASS, TH.data, trtf (>= 0.3-3), mlbench, knitr, quantreg,
colorspace, ATR, lme4, merDeriv, SparseGrid, alabama, numDeriv,
gridExtra, lattice, latticeExtra, HSAUR3, mvtnorm, ordinalCont,
coxme, glmmsr, mlt.docreg, ordinal, coin, asht, gamlss
MASS, TH.data, trtf (>= 0.3-3), mlbench, knitr, quantreg,
colorspace, ATR, lme4, merDeriv, SparseGrid, alabama, numDeriv,
gridExtra, lattice, latticeExtra, HSAUR3, mvtnorm, ordinalCont,
coxme, mlt.docreg, ordinal, coin, asht, gamlss
MASS, TH.data, trtf (>= 0.3-3), mlbench, knitr, quantreg,
colorspace, ATR, lme4, merDeriv, SparseGrid, alabama, numDeriv,
gridExtra, lattice, latticeExtra, HSAUR3, ordinalCont, coxme,
mlt.docreg, ordinal, coin, asht, gamlss
multcomp, parallel, survival, knitr, coxme, ordinal,
ordinalCont, ggplot2
multcomp, parallel, survival, knitr, coxme, ordinal,
ordinalCont, gamm4, gamlss.dist, glmmTMB, xtable
penalized, TH.data, survival, knitr, mlbench, colorspace,
mvtnorm, glmnet, trtf, Matrix, lasso2, lattice, kableExtra,
coin, tbm
penalized, TH.data, survival, knitr, mlbench, colorspace,
mvtnorm, glmnet, trtf, Matrix, lasso2, lattice, kableExtra,
coin, tbm, DiceKriging
penalized, TH.data, survival, knitr, mlbench, colorspace,
mvtnorm, glmnet, trtf, Matrix, lattice, kableExtra, coin, tbm,
DiceKriging
rmarkdown, knitr, bench, testthat (>= 3.0.0), roxygen2
abess, tramnet, colorspace, knitr, cotram, mlt, TH.data,
survival, ordinal
abess, tramnet, colorspace, knitr, mlt, TH.data, survival,
ordinal
knitr, rmarkdown, elevatr, rgdal, progress, whitebox
dplyr, stringr, knitr, rmarkdown, testthat, spelling
dplyr, ggplot2, cli, testthat, knitr, DescTools, outliers,
rmarkdown, mFilter, covr
knitr, rmarkdown, testthat (>= 3.0.0), terra, shapefiles, sf,
elevatr, fs
PerformanceAnalytics, tidyr, ggplot2, dataseries, knitr,
rmarkdown
doParallel, foreach, testthat (>= 0.9-0)
knitr, rmarkdown, testthat, rpart.plot, ggplot2
knitr, rmarkdown, testthat, rpart.plot, ggplot2, ggthemes
MASS, randomForest, ranger, testthat (>= 2.1.0), knitr,
rmarkdown, covr
adaptiveGPCA (>= 0.1), knitr (>= 1.16), testthat (>= 2.0.0),
markdown, rmarkdown
knitr, pkgload, plotrix, rmarkdown, rprojroot, RUnit,
testthat, tinytest
pkgload, plotrix, rmarkdown, rprojroot, RUnit, testthat,
tinytest
Seurat, gridExtra, knitr, qpdf, rmarkdown, testthat
Seurat, gridExtra, knitr, plotly, qpdf, rmarkdown, testthat
forcats, knitr, rmarkdown, rpart, testthat
AmesHousing, gbm, glmnet (>= 3.0), graphics, mlbench, party,
partykit, randomForest, ranger, rpart.plot, tinytest
igraph, RColorBrewer, ggplot2, testthat, knitr, rmarkdown
RColorBrewer, ggplot2, testthat, knitr, rmarkdown
igraph, RColorBrewer, ggplot2, testthat, knitr, rmarkdown,
rgl
ggplot2, igraph, knitr, pander, RColorBrewer, reshape2, rgl,
rmarkdown, testthat
ggplot2, igraph, knitr, pander, RColorBrewer, reshape2,
rmarkdown, testthat
Cairo, dplyr, testthat (>= 0.11.0), roxygen2 (>= 5.0.1),
scagnostics, housingData
rbokeh, plotly, Cairo, testthat, covr, gapminder,
housingData, packagedocs
rbokeh, plotly, testthat, covr, gapminder, housingData
plotly, testthat, covr, gapminder, housingData
plotly, testthat, covr, gapminder, rmarkdown, shiny,
housingData
testthat (>= 3.0.0), clipr, vcr (>= 0.6.0), knitr, rmarkdown
brms, ciTools, covr, dplyr, ggplot2, knitr, outbreaks,
patchwork, rmarkdown, testthat
brms, ciTools, covr, ggplot2, knitr, outbreaks, patchwork,
rmarkdown, testthat
brms, covr, ggplot2, knitr, outbreaks, patchwork, rmarkdown,
dplyr, testthat
testthat, knitr, rmarkdown, ggridges, covr
testthat, knitr, rmarkdown, ggridges, covr, DiagrammeR
testthat, knitr, rmarkdown, tidyr, ggridges, DiagrammeR
knitr, ggplot2, lplyr, observer, testthat
testthat, knitr, rmarkdown, sf, leaflet, httpuv
testthat, knitr, rmarkdown, sf, leaflet, httpuv, dplyr
testthat, knitr, rmarkdown, MASS, reshape
survival, haplo.stats, mcbiopi, siggenes, splines
survival, haplo.stats, mcbiopi, siggenes, splines, LogicReg
(>= 1.5.3), logicFS (>= 1.23.4)
survival, haplo.stats, mcbiopi, siggenes, splines, LogicReg
(>= 1.5.3), logicFS (>= 1.28.1)
spatstat (>= 1.18-4), maptools, rgdal, adehabitat, lattice
adehabitatLT, knitr, rgdal, testthat, covr, rmarkdown,
diveMove, argosfilter
adehabitatLT, knitr, rgdal, testthat, covr, rmarkdown,
lubridate, dplyr, maps, spelling
adehabitatLT, knitr, dplyr, testthat, covr, rmarkdown,
lubridate, maps, spelling
adehabitatLT, knitr, testthat, covr, rmarkdown, lubridate,
maps, spelling
testthat, knitr, randomForest, mlbench, ranger, gbm, covr
testthat (>= 3.0.0), spelling, knitr, rmarkdown, viridis,
ggplot2, countrycode, tidyr, stringr, readstata13, haven, maps
devtools, ggraph, patchwork, RPostgres, testthat (>= 2.1.0),
tidyr
futile.logger, testthat, knitr, rmarkdown, covr
tcltk, sm, scatterplot3d, rgl, vars, FinTS
sm, scatterplot3d, rgl, tidyverse, rugarch
testthat, dplyr, tibble, forecast, seasonal, dygraphs, xts,
ggplot2, scales, knitr, rmarkdown, tsibble, zoo, timeSeries,
nycflights13
testthat, dplyr, tibble, forecast, seasonal, dygraphs, xts,
ggplot2, scales, knitr, rmarkdown, tsibble, tibbletime, zoo,
timeSeries, nycflights13
testthat, dplyr, tibble, forecast, seasonal, dygraphs, xts,
ggplot2, scales, knitr, rmarkdown, tsibble (>= 0.8.2),
tsibbledata, tibbletime, tseries, zoo, tis, timeSeries,
nycflights13
testthat, dplyr, tibble, forecast, seasonal, dygraphs, xts,
ggplot2, scales, knitr, rmarkdown, tsibble (>= 0.8.2),
tsibbledata, tibbletime, tseries, zoo, tis, timeSeries,
nycflights13, imputeTS, spelling
Matrix, xtable, gamlss.data, surveillance, gamlss, VGAM, acp,
glarma, gamlss.util, KFAS, gcmr
testthat, knitr, rmarkdown, ggplot2, tidyr, dplyr, Mcomp,
GGally
knitr, rmarkdown, testthat, covr, hts, hms, nycflights13
knitr, rmarkdown, testthat, covr, hts, hms, nycflights13,
ggplot2 (>= 2.2.0)
covr, ggplot2 (>= 2.2.0), hms, hts, knitr, nycflights13,
rmarkdown, testthat
covr, ggplot2 (>= 2.2.0), hms, hts, knitr, nycflights13 (>=
1.0.0), rmarkdown, testthat
covr, ggplot2 (>= 2.2.0), hms, hts, knitr, nanotime,
nycflights13 (>= 1.0.0), rmarkdown, testthat, timeDate
covr, ggplot2 (>= 2.2.0), hms, hts, knitr, nanotime,
nycflights13 (>= 1.0.0), pillar (>= 1.0.1), rmarkdown,
testthat, timeDate
covr, ggplot2 (>= 2.2.0), hms, knitr, nanotime, nycflights13
(>= 1.0.0), pillar (>= 1.0.1), rmarkdown, testthat, timeDate,
spelling
covr, furrr, ggplot2 (>= 2.2.0), hms, knitr, nanotime,
nycflights13 (>= 1.0.0), pillar (>= 1.0.1), rmarkdown,
spelling, testthat, timeDate
covr, crayon, furrr, ggplot2 (>= 2.2.0), hms, knitr,
nanotime, nycflights13 (>= 1.0.0), pillar (>= 1.0.1),
rmarkdown, spelling, testthat, timeDate
covr, crayon, furrr, ggplot2 (>= 2.2.0), hms, knitr,
nanotime, nycflights13 (>= 1.0.0), pillar (>= 1.0.1),
rmarkdown, spelling, testthat, tidyr (>= 1.0.0), timeDate
covr, furrr, ggplot2 (>= 3.3.0), hms, knitr, nanotime,
nycflights13 (>= 1.0.0), rmarkdown, scales (>= 1.1.0),
spelling, testthat (>= 2.3.2), tidyr (>= 1.1.0), timeDate
covr, ggplot2 (>= 3.3.0), hms, knitr, nanotime, nycflights13
(>= 1.0.0), rmarkdown, scales (>= 1.1.0), spelling, testthat
(>= 2.3.2), tidyr (>= 1.1.0), timeDate
covr, ggplot2 (>= 3.3.0), hms, knitr, nanotime, nycflights13
(>= 1.0.0), rmarkdown, scales (>= 1.1.0), spelling, testthat
(>= 3.0.0), tidyr (>= 1.1.0), timeDate
spelling, testthat, knitr, rmarkdown, gdtools, vdiffr
spelling, testthat, knitr, rmarkdown, gdtools, vdiffr,
animation
covr, gdtools, knitr, rmarkdown, raster, spelling, testthat
(>= 2.1.0), vdiffr
covr, gdtools, knitr, rmarkdown, raster, spelling, testthat,
vdiffr
networkDynamicData, testthat, sna, knitr, relevent
networkDynamicData, testthat, sna, knitr, relevent, ergm (>=
3.6)
networkDynamicData, testthat, sna, knitr, relevent, ergm (>=
3.10)
networkDynamicData, testthat, sna, knitr, rmarkdown,
relevent, ergm (>= 3.10)
knitr, rmarkdown, testthat, reshape2, openxlsx
knitr (>= 1.11), testthat, rmarkdown, xml2
knitr (>= 1.11), testthat, rmarkdown, xml2, lintr
knitr (>= 1.11), testthat, rmarkdown, xml2, lintr, hms
knitr, ggplot2, gridExtra, xtable, reshape2, sandwich, stepp,
aods3, CorrBin, SASmixed, SimComp, HSAUR3
knitr, xtable, reshape2, sandwich, CorrBin, SASmixed,
SimComp, HSAUR3
testthat, knitr, covr, kernlab, xml2, spelling
testthat, knitr, covr, kernlab, randomForest, modeldata,
xml2, spelling
covr, hardhat (>= 0.1.5), kernlab, knitr, modeldata,
randomForest, spelling, testthat, xml2
covr, kernlab, knitr, modeldata, randomForest, spelling,
testthat, xml2
covr, kernlab, knitr, modeldata, spelling, testthat (>=
3.0.0), xml2
ggthemes, ggplot2, dplyr, tidyr, purrr, magrittr, gridExtra
ggthemes, ggplot2, dplyr, tidyr, purrr, knitr, rmarkdown,
magrittr, gridExtra, testthat
testthat (>= 2.1.0), covr, knitr, rmarkdown, tidyr, readr
testthat, lifecycle, rmarkdown, ggplot2, purrr
testthat, knitr, rmarkdown, covr, future, future.apply,
origami (>= 1.0.3), ranger, Rsolnp, nnls, rlang
testthat, knitr, rmarkdown, covr, future, future.apply,
origami (>= 1.0.3), ranger, Rsolnp, nnls
knitr, rematch, rmarkdown, testthat (>= 3.0.0)
rmarkdown, testthat (>= 2.1.0), prospectr
gsl (>= 1.9-10.3), pbapply (>= 1.3-2), testthat, knitr,
rmarkdown
gsl (>= 1.9-10.3), testthat, knitr, rmarkdown
knitr, rmarkdown, markdown, mapview, grDevices, stringr,
htmltools, htmlwidgets, maptools
knitr, stringr, sp, sf, htmlwidgets, htmltools, Rcpp, rgdal,
rgeos, gdalUtils, tools, caret, zoo, data.table, parallel,
spatial.tools, velox, link2GI, doParallel, CAST, glcm, crayon,
ForestTools, itcSegment, pROC, methods, RSAGA, reshape2,
rgrass7, randomForest, rLiDAR, rlas, lidR, rmarkdown, mapview
knitr, stringr, sp, sf, htmlwidgets, htmltools, Rcpp, rgdal,
rgeos, gdalUtils, tools, caret, zoo, data.table, parallel,
spatial.tools, velox, link2GI, doParallel, CAST, glcm, crayon,
ForestTools, itcSegment, pROC, methods, RSAGA, reshape2,
rgrass7, randomForest, rLiDAR, rlas, lidR, rmarkdown, mapview,
R.utils
GA, GGally, gridGraphics, webshot, testthat, ggrepel
GA, GGally, gridGraphics, gridExtra, grid, officer, webshot,
ggrepel, rstudioapi, testthat
covr, devtools, knitr, pkgdown, raster, rmarkdown, roxygen2,
testthat
covr, devtools, knitr, pkgdown, raster, rmarkdown, rlang,
roxygen2, testthat
knitr, rmarkdown, topicmodels, lattice, parallel
testthat (>= 2.1.0), ggplot2, dplyr, spelling
testthat, covr, knitr, rmarkdown, ggplot2, dplyr, leaflet,
htmltools, scales
testthat, covr, knitr, rmarkdown, ggplot2, dplyr, leaflet,
htmltools, scales, sf, snakecase, sp
testthat, covr, knitr, rmarkdown, ggplot2, dplyr, leaflet,
htmltools, scales, sf, sp
cocor, devtools, gdata, Hmisc, testthat, rmarkdown
cocor, devtools, gdata, Hmisc, spelling, testthat, rmarkdown,
psych
cocor, devtools, gdata, hrbrthemes, Hmisc, spelling,
testthat, rmarkdown, psych, rhub
cocor, devtools, gdata, hrbrthemes, Hmisc, spelling,
testthat, rmarkdown, psych, psychTools, rhub, pwr
cocor, devtools, gdata, gert, hrbrthemes, spelling, testthat,
rmarkdown, paran, psych, psychTools, rhub, pwr
cocor, devtools, gdata, hrbrthemes, Hmisc, spelling,
testthat, rmarkdown, psych
glue, testthat (>= 2.1.0), rlang, covr, knitr, rmarkdown,
magrittr
knitr, rmarkdown, testthat, rstan, data.table
terrainr, covr, knitr, lintr, pkgdown, rmarkdown, styler,
testthat (>= 3.0.0), terra, sf
knitr, rmarkdown, geometry, rgl, misc3d, scatterplot3d
covr, knitr, rmarkdown, tidyverse, devtools, testthat (>=
3.0.0)
covr, knitr, rmarkdown, testthat, devtools
testthat (>= 3.0.0), rmarkdown, knitr, lmtest, ggplot2, covr
NISTunits, measurements, xml2, tibble, knitr, testthat, covr
NISTunits, measurements, xml2, tibble, knitr, testthat, covr,
ggforce, magrittr
NISTunits, measurements, xml2, tibble, knitr, testthat,
ggforce, magrittr
NISTunits, measurements, xml2, tibble, pillar, knitr,
testthat, ggforce, rmarkdown, magrittr
udunits2, NISTunits, measurements, xml2, tibble, pillar,
knitr, testthat, ggforce, rmarkdown, magrittr
udunits2, NISTunits, measurements, xml2, tibble, pillar (>=
1.3.0), knitr, testthat, ggforce, rmarkdown, magrittr
udunits2, NISTunits, measurements, xml2, magrittr, pillar (>=
1.3.0), dplyr (>= 1.0.0), vctrs (>= 0.3.1), knitr, testthat,
ggforce, rmarkdown
udunits2, NISTunits, measurements, xml2, magrittr, pillar (>=
1.3.0), dplyr (>= 1.0.0), vctrs (>= 0.3.1), knitr, testthat (>=
3.0.0), ggforce, rmarkdown
NISTunits, measurements, xml2, magrittr, pillar (>= 1.3.0),
dplyr (>= 1.0.0), vctrs (>= 0.3.1), ggplot2 (> 3.2.1), testthat
(>= 3.0.0), vdiffr, knitr, rmarkdown
testthat, knitr, covr, rmarkdown, copula, dplyr
testthat, knitr, covr, rmarkdown, markdown, copula, dplyr
testthat, knitr, rmarkdown, markdown, copula, dplyr, covr
gapminder, tidyr, testthat, covr, spelling
knitr, rmarkdown, pkgdown, raster, testthat
data.table, dplyr, knitr, repurrrsive, rmarkdown, roxygen2,
testthat, tibble, tidyr
knitr, rmarkdown, tidyxl, stringr, testthat
knitr, rmarkdown, tidyxl, stringr, htmltools, rvest, testthat
knitr, rmarkdown, tidyxl, stringr, htmltools, rvest, selectr,
testthat
knitr, rmarkdown, readr, tidyxl, readxl, stringr, htmltools,
rvest, selectr, DT, testthat
knitr, rmarkdown, readr, tidyxl, readxl, stringr, htmltools,
rvest, selectr, DT, testthat, covr
knitr, rmarkdown, readr, tidyxl, readxl, stringr, htmltools,
rvest, selectr, DT, testthat, covr, here
testthat, knitr, glue, mvtnorm, kableExtra, forcats, stringr,
rmarkdown, covr, roxygen2, bookdown
bookdown, covr, extrafont, forcats, glue, kableExtra, knitr,
lavaan, lifecycle, mvtnorm, patchwork, ragg, rmarkdown,
roxygen2, scales, simstandard (>= 0.6.3), stringr, sysfonts,
testthat
knitr, dplyr, readxl, countrycode, tidyr, lubridate,
devtools, rmarkdown, ggplot2
covr, testthat, SuppDists, Rmpfr, CVXR, knitr, rmarkdown,
tidyverse
covr, testthat, SuppDists, Rmpfr, CVXR, knitr, rmarkdown
covr, testthat, SuppDists, Rmpfr, knitr, rmarkdown
covr, testthat, SuppDists, knitr, rmarkdown
covr, testthat, SuppDists, knitr, rmarkdown,
VariantAnnotation, GenomicRanges, S4Vectors, IRanges
testthat, knitr, rmarkdown, grf, tweedie, qpdf
knitr, crosstalk, rmarkdown, formatR, tibble, testthat,
styler, lintr, pkgdown
knitr, crosstalk, rmarkdown, formatR, tibble
knitr, crosstalk, rmarkdown, formatR, tibble, testthat
proj4, sf (>= 0.6-1), raster, ncdf4, locfit, knitr, tcltk,
sp, methods, fasterize, IRdisplay, caTools, ggmap, shiny,
rgeos, tools, webp, htmlwidgets, htmltools, leaflet, leafem,
leafpop, RColorBrewer
proj4, sf (>= 0.6-1), raster, ncdf4, locfit, knitr,
rmarkdown, tcltk, sp, methods, fasterize, IRdisplay, caTools,
shiny, rgeos, tools, webp, htmlwidgets, htmltools, leaflet,
leafem, leafpop, RColorBrewer, Cairo, widgetframe
proj4, sf (>= 0.6-1), raster, ncdf4, locfit, knitr, tcltk,
sp, methods, fasterize, IRdisplay, caTools, ggmap
proj4, sf (>= 0.6-1), raster, ncdf4, locfit, knitr,
rmarkdown, tcltk, sp, methods, fasterize, IRdisplay, caTools,
shiny, rgeos, tools, webp, htmlwidgets, htmltools, leaflet,
leafem, leafpop, RColorBrewer, Cairo, widgetframe, geojsonsf
(>= 2.0.0), leaflet.providers
proj4, sf (>= 0.6-1), raster, ncdf4, locfit, knitr,
rmarkdown, tcltk, sp, methods, fasterize, IRdisplay, caTools,
shiny, rgeos, tools, webp, htmlwidgets, htmltools, leaflet,
leafem, leafpop, RColorBrewer, ragg, widgetframe, geojsonsf (>=
2.0.0), leaflet.providers
proj4, sf (>= 0.6-1), raster, ncdf4, locfit, knitr,
rmarkdown, tcltk, sp, methods, fasterize, IRdisplay, caTools,
shiny, rgeos, tools, webp, htmlwidgets, htmltools, leaflet,
leafem, leafpop, RColorBrewer, ragg, widgetframe, geojsonsf (>=
2.0.0), leaflet.providers, magick
knitr, rmarkdown, tidyverse, dplyr, tidyr
covr, rmarkdown, spelling, testthat (>= 3.0.0)
covr, roxygen2, testthat (>= 2.0.0), withr
covr, knitr, roxygen2, testthat (>= 2.0.0), withr
covr, knitr, magick, rmarkdown, roxygen2, spelling (>= 1.2),
styler (>= 1.0.2), testthat (>= 2.0.0), withr
covr, knitr, magick, pkgdown (>= 1.1.0), rmarkdown, roxygen2,
spelling (>= 1.2), styler (>= 1.0.2), testthat (>= 2.0.0)
covr, knitr, magick, pkgdown (>= 1.1.0), rmarkdown, roxygen2,
spelling (>= 1.2), styler (>= 1.0.2), testthat (>= 2.1.0)
covr, knitr, magick, pkgdown (>= 1.4.0), rmarkdown, roxygen2,
spelling (>= 1.2), styler (>= 1.2.0), testthat (>= 2.1.0)
covr, knitr, magick, mockr, rmarkdown, roxygen2, spelling (>=
1.2), styler (>= 1.2.0), testthat (>= 3.0.0)
covr, knitr, magick, mockr, pkgload, rmarkdown, roxygen2,
spelling (>= 1.2), styler (>= 1.2.0), testthat (>= 3.1.0)
covr, knitr, magick, mockr, pkgload, rmarkdown, roxygen2 (>=
7.1.2), spelling (>= 1.2), styler (>= 1.2.0), testthat (>=
3.1.0)
dplyr, ggplot2, knitr, rmarkdown, scales, testthat (>=
3.0.0), tidyr, tools
ggplot2, knitr, proto, rmarkdown, testthat
ggplot2, knitr, proto, rmarkdown, scales, testthat
ggplot2, knitr, proto, rmarkdown, scales, stringr, testthat
ggplot2, ggrepel, knitr, maptools, proto, rgdal, rmarkdown,
scales, sp, stringr, testthat
covr, ggplot2, ggrepel, knitr, maptools, proto, rgdal,
rmarkdown, scales, sp, stringr, testthat
covr, knitr, rlang, rmarkdown, testthat (>= 3.0.0)
cli, covr, knitr, rlang, rmarkdown, testthat (>= 3.0.0),
withr
ggplot2, ggdag (>= 0.2.4), gmp, gridExtra, matrixStats
ggplot2, ggdag (>= 0.2.4), gmp, gridExtra, matrixStats,
scales, VGAM
C50, e1071, FSelector, infotheo, kknn, knitr, parallel,
randomForest, rJava(>= 0.9), rmarkdown, rpart, RWeka(>= 0.4),
testthat
C50, e1071, FSelector, infotheo, kknn, knitr, parallel,
randomForest, rJava(>= 0.9), rmarkdown, rpart, RWeka(>= 0.4),
testthat, xgboost
C50, e1071, FSelector, infotheo, kknn, knitr, parallel,
randomForest, rJava(>= 0.9), rmarkdown, rpart, RWeka(>= 0.4),
testthat, xgboost(>= 0.6-4)
C50, e1071, FSelector, infotheo, kknn, knitr, randomForest,
rJava(>= 0.9), rmarkdown, rpart, RWeka(>= 0.4), testthat,
xgboost(>= 0.6-4)
C50, e1071, infotheo, kknn, knitr, randomForest, rmarkdown,
markdown, rpart, testthat, xgboost(>= 0.6-4)
movMF, rbenchmark, knitr, rmarkdown, ggplot2, ddpcr
testthat, ggplot2, knitr, tidyr, rmarkdown
vaersvax, data.table, dplyr, rpivotTable, knitr, rmarkdown
vaersvax, vaers, vaersND, data.table (>= 1.9.4), dplyr,
rpivotTable, knitr, rmarkdown
vaersvax, vaers, vaersND, data.table (>= 1.9.4), dplyr,
rpivotTable
vaersNDvax, data.table, dplyr, rpivotTable, knitr, rmarkdown
vaersNDvax, vaers, vaersND, data.table (>= 1.9.4), dplyr,
rpivotTable, knitr, rmarkdown
vaersNDvax, vaers, vaersND, data.table (>= 1.9.4), dplyr,
rpivotTable, devtools
vaersNDvax, vaers, vaersND, dplyr, data.table (>= 1.10.2),
pivottabler, knitr, rmarkdown
lattice, latticeExtra, knitr, network, tm
magrittr, testthat, stringr, knitr, rmarkdown
tinytest (>= 0.9.6), knitr, bookdown, lumberjack
tinytest (>= 0.9.6), knitr, bookdown, lumberjack, rmarkdown
rsdmx, tinytest (>= 0.9.6), knitr, bookdown, lumberjack,
rmarkdown
knitr, rmarkdown, testthat, microbenchmark, covr,
shinydashboard, RMySQL,
knitr, rmarkdown, testthat, microbenchmark, covr, RMySQL,
purrr
knitr, rmarkdown, testthat, microbenchmark, covr, RMySQL,
purrr, tidyr,
knitr, rmarkdown, testthat, microbenchmark, covr, RMySQL,
purrr, tidyr, devtools, DT, cowplot, dbplyr, GenomicRanges,
IRanges, S4Vectors,
knitr, rmarkdown, testthat, microbenchmark, covr, curl,
RMySQL, purrr, tidyr, devtools, DT, cowplot, dbplyr,
GenomicRanges, IRanges, S4Vectors,
knitr, rmarkdown, testthat, bench, covr, curl, purrr, tidyr,
devtools, DT, cowplot, dbplyr, GenomicRanges, IRanges,
S4Vectors, DBI, RMariaDB
bench, covr, cowplot, curl, DBI, dbplyr, devtools, DT,
GenomicRanges, IRanges, knitr, purrr, RMariaDB, rmarkdown,
S4Vectors, testthat, tidyr
bench, covr, cowplot, curl, DBI, dbplyr, devtools, DT,
GenomicRanges, IRanges, knitr, purrr, RMariaDB, rmarkdown,
S4Vectors, testthat (>= 3.0.0), vdiffr (>= 1.0.0), tidyr
testthat, knitr, rmarkdown, doParallel (>= 1.0.10), foreach
(>= 1.4.3)
testthat, knitr, rmarkdown, doParallel (>= 1.0.10), foreach
(>= 1.4.3), limSolve
knitr, rmarkdown, scales, testthat (>= 3.0.0)
covr, dplyr, geojsonsf, testthat, knitr, rbenchmark,
rmarkdown
covr, dplyr, geojsonsf, testthat, knitr, rbenchmark,
rmarkdown, spelling
testthat, knitr, markdown, rmarkdown, spelling
curl, glmnet, qtl, knitr, rmarkdown, testthat
knitr, rmarkdown, Boruta, DAAG, FSelector, caret, e1071,
mlbench, psych, varSelRF, gplots
knitr, rmarkdown, Boruta, DAAG, FSelector, caret, e1071,
mlbench, psych, varSelRF, gplots, entropy, testthat
Boruta, FSelector, caret, e1071, mlbench, psych, varSelRF,
gplots, entropy, testthat, knitr
Boruta, FSelector, caret, e1071, mlbench, psych, varSelRF,
gplots, entropy, testthat, knitr, markdown
tmap, knitr, rmarkdown, microbenchmark, parallel, gstat
gstat, knitr, microbenchmark, parallel, rmarkdown, R.rsp
gstat, knitr, microbenchmark, parallel, rmarkdown, R.rsp,
spData
DiceKriging, gstat, knitr, microbenchmark, parallel,
rmarkdown, R.rsp, spData
DiceKriging, gstat, parallel, spData, sp
DiceKriging, knitr, lattice, latticeExtra, parallel,
rmarkdown, sp, spData, testthat (>= 3.0.0)
knitr, mockery, processx, rmarkdown, testthat, withr
KernSmooth, mvtnorm, kernlab, HSAUR, coin
KernSmooth, mvtnorm, kernlab, HSAUR3, coin
ca, gmodels, Fahrmeir, effects, VGAM, plyr, lmtest, nnet,
ggplot2, Sleuth2, car, lattice, stats4, rgl, AER
ca, gmodels, Fahrmeir, effects, VGAM, plyr, lmtest, nnet,
ggplot2, Sleuth2, car, lattice, stats4, rgl
gmodels, Fahrmeir, effects, VGAM, plyr, lmtest, nnet,
ggplot2, Sleuth2, car, lattice, stats4, rgl, AER
gmodels, Fahrmeir, effects, VGAM, plyr, lmtest, nnet,
ggplot2, Sleuth2, car, lattice, stats4, rgl, AER, coin, Hmisc,
knitr, rmarkdown
adegenet, ggplot2, knitr, pinfsc50, poppr, reshape2,
rmarkdown, scales, testthat, viridisLite
adegenet, ggplot2, knitr, poppr, reshape2, rmarkdown, scales,
testthat
adegenet, ggplot2, knitr, poppr, reshape2, rmarkdown, scales,
testthat, tidyr
jsonlite, testthat, knitr, rmarkdown, desc, crayon, cli
roxygen2 (>= 7.0.2), jsonlite, testthat, knitr, rmarkdown,
desc, crayon, cli, curl
roxygen2 (>= 7.0.2), jsonlite, testthat, knitr, rmarkdown,
desc, crayon, cli, curl, withr
roxygen2 (>= 7.1.1), jsonlite, testthat, knitr, rmarkdown,
desc, crayon, cli, curl, withr
roxygen2 (>= 7.2.1), jsonlite, testthat, knitr, rmarkdown,
desc, crayon, cli, curl, withr
covr, generics, knitr, pillar, pkgdown, rmarkdown, testthat,
tibble
bit64, covr, crayon, generics, knitr, pillar (>= 1.4.1),
pkgdown, rmarkdown, testthat, tibble
bit64, covr, crayon, generics, knitr, pillar (>= 1.4.1),
pkgdown, rmarkdown, testthat (>= 2.3.0), tibble, xml2, zeallot
bit64, covr, crayon, dplyr (>= 0.8.5), generics, knitr,
pillar (>= 1.4.4), pkgdown, rmarkdown, testthat (>= 2.3.0),
tibble, withr, xml2, zeallot
bit64, covr, crayon, dplyr (>= 0.8.5), generics, knitr,
pillar (>= 1.4.4), pkgdown, rmarkdown, testthat (>= 2.3.0),
tibble, withr, xml2, waldo (>= 0.2.0), zeallot
bit64, covr, crayon, dplyr (>= 0.8.5), generics, knitr,
pillar (>= 1.4.4), pkgdown (>= 2.0.1), rmarkdown, testthat (>=
3.0.0), tibble (>= 3.1.3), withr, xml2, waldo (>= 0.2.0),
zeallot
knitr, rmarkdown, geomorph, rgl, scatterplot3d, RRPP
crayon, ggplot2 (>= 3.0.0), roxygen2, rstudioapi, withr, yaml
crayon, ggplot2 (>= 3.2.0), roxygen2, rstudioapi, withr, yaml
covr, ggplot2 (>= 3.2.0), roxygen2, withr
MASS, mgcv, lattice, cluster, scatterplot3d, rgl, ellipse, tcltk
MASS, mgcv, lattice, cluster, scatterplot3d, rgl, ellipse,
tcltk
MASS, mgcv, lattice, cluster, scatterplot3d, rgl, tcltk
MASS, mgcv, lattice, cluster, scatterplot3d, rgl, ellipse
MASS, mgcv, cluster, scatterplot3d, rgl, tcltk
knitr, rmarkdown, listviewer, httr, testthat, yaml, fs,
gistr, webshot, magick, usethis, whisker, crayon, clipr, desc,
clisymbols, shinytest, readr, tibble, lubridate, learnr,
processx, rsvg, dplyr, png, conflicted, here
spelling, knitr, rmarkdown, listviewer, httr, testthat, yaml,
fs, usethis (>= 1.5.0), readr, tibble, lubridate, learnr,
processx, rsvg, dplyr, png, conflicted, here, withr, shiny
spelling, knitr, rmarkdown, listviewer, httr, testthat, yaml,
fs, usethis (>= 1.5.0), readr, tibble, lubridate, learnr,
processx, rsvg, dplyr, png, conflicted, here, withr, shiny,
purrr, rsconnect
spelling, knitr, rmarkdown, listviewer, httr, testthat (>=
3.0.0), yaml, fs, usethis (>= 1.5.0), readr, tibble, lubridate,
learnr, processx, rsvg, dplyr, png, conflicted, here, withr,
shiny, purrr, rsconnect
spelling, knitr, rmarkdown, listviewer, testthat (>= 3.0.0),
yaml, fs, usethis (>= 1.5.0), readr, tibble, lubridate, V8 (>=
4.0), withr, learnr, rsvg, dplyr, png, conflicted, here, shiny,
purrr, rsconnect
RODBC, lattice, RMySQL, Hmisc, vegan, labdsv, akima
RODBC, lattice, RMySQL, Hmisc, vegan, labdsv, akima,
indicspecies
RODBC, lattice, RMySQL, Hmisc, indicspecies, vegan, labdsv,
akima
HOF, vegan, labdsv, akima, gWidgets, R.utils, googleVis
HOF, vegan, labdsv, akima, RMySQL, gWidgets, R.utils,
googleVis
vegan, labdsv, akima, RMySQL, gWidgets, R.utils, googleVis
vegan, labdsv, akima, gWidgets, R.utils, googleVis
vegan, labdsv, akima, gWidgets, googleVis, indicspecies,
knitr
vegan, labdsv, akima, gWidgets, googleVis
vegan, labdsv, akima, gWidgets, googleVis, knitr
vegan, labdsv, akima, gWidgets, googleVis, indicspecies,
knitr, testthat
vegan, labdsv, akima, gWidgets, googleVis, indicspecies,
knitr, testthat, RSQLite
vegan, labdsv, akima, googleVis, indicspecies, uuid, knitr,
stringr, testthat
vegan, labdsv, akima, gWidgets, googleVis, indicspecies,
uuid, knitr, testthat, RSQLite
vegan, labdsv, akima, gWidgets, googleVis, indicspecies,
uuid, knitr, stringr, testthat
knitr, rmarkdown, testthat, covr, lwgeom, cptcity
knitr, rmarkdown, testthat, covr, lwgeom
testthat, knitr, rmarkdown, covr, here, fs, conflicted,
usethis
dplyr, ggplot2, rmarkdown, spelling, testthat (>= 3.0.0),
tibble
covr, knitr, rmarkdown, testthat (>= 3.0.0), xgboost
caret, covr, knitr, LiblineaR, mlr3, mlr3learners, modeldata,
parsnip, ranger, recipes, rmarkdown, rpart, rsconnect, testthat
(>= 3.0.0), workflows, xgboost
callr, caret, covr, httpuv, knitr, LiblineaR, mlr3,
mlr3learners, modeldata, parsnip, pingr, ranger, recipes,
rmarkdown, rpart, rsconnect, testthat (>= 3.0.0), workflows,
xgboost
callr, caret, covr, curl, dplyr, ggplot2, httpuv, knitr,
LiblineaR, mlr3, mlr3learners, modeldata, parsnip, pingr,
ranger, recipes, rmarkdown, rpart, rsconnect, slider (>=
0.2.2), testthat (>= 3.0.0), tidyselect, vdiffr, workflows,
xgboost, yardstick
callr, caret, covr, curl, dplyr, flexdashboard, ggplot2,
httpuv, knitr, LiblineaR, mlr3, mlr3data, mlr3learners,
modeldata, parsnip, pingr, plotly, ranger, recipes, rmarkdown,
rpart, rsconnect, slider (>= 0.2.2), testthat (>= 3.0.0),
tidyselect, vdiffr, workflows, xgboost, yardstick
callr, caret, covr, curl, dplyr, flexdashboard, ggplot2,
httpuv, httr, jsonlite, knitr, LiblineaR, mgcv, mlr3, mlr3data,
mlr3learners, modeldata, parsnip, pingr, plotly, ranger,
recipes, rmarkdown, rpart, rsconnect, slider (>= 0.2.2),
stacks, testthat (>= 3.0.0), tidyselect, vdiffr, workflows,
xgboost, yardstick
testthat (>= 3.0.0), shinytest, rlang, pkgload, vdiffr
covr, dplyr, knitr, leaflet, plotly, remotes, rmarkdown,
testthat,
knitr, rmarkdown, MASS, gam, glmnet, xgboost, covr, testthat
knitr, rmarkdown, MASS, gam, xgboost, glmnet, quadprog, covr,
testthat
knitr, rmarkdown, MASS, gam, xgboost, glmnet, ranger,
quadprog, covr, testthat, ggplot2, cowplot, RCurl, forcats
knitr, rmarkdown, gam, xgboost, glmnet, ranger, polspline,
quadprog, covr, testthat, ggplot2, cowplot, RCurl, forcats
knitr, rmarkdown, gam, xgboost, glmnet, ranger, polspline,
quadprog, covr, testthat, ggplot2, cowplot, RCurl
knitr, rmarkdown, gam, xgboost, glmnet, ranger, polspline,
quadprog, covr, testthat, ggplot2, cowplot, RCurl, cvAUC
knitr, rmarkdown, gam, xgboost, glmnet, ranger, polspline,
quadprog, covr, testthat, ggplot2, cowplot, cvAUC, tidyselect
knitr, rmarkdown, ggplot2, PivotalR, quantreg, tidyr, dplyr,
purrr, scales, mgcv, testthat, covr
knitr, rmarkdown, ggplot2, AppliedPredictiveModeling,
quantreg, tidyr, dplyr, purrr, scales, mgcv, testthat, covr
ggplot2, RColorBrewer, knitr, rmarkdown, testthat
base, ggplot2, RColorBrewer, knitr, rmarkdown, testthat
C50, caret, earth, gbm, h2o, knitr, party, partykit, ranger,
rpart, randomForest, rmarkdown, xgboost, glmnet, testthat
C50, caret, Ckmeans.1d.dp, covr, doParallel, dplyr, earth,
gbm, glmnet, h2o, keras, knitr, lattice, mlbench,
NeuralNetTools, nnet, party, partykit, randomForest, ranger,
rmarkdown, rpart, sparklyr, testthat, xgboost
DT, C50, caret, Ckmeans.1d.dp, covr, Cubist, doParallel,
dplyr, earth, gbm, glmnet, h2o, htmlwidgets, keras, knitr,
lattice, mlbench, neuralnet, NeuralNetTools, nnet, party,
partykit, randomForest, ranger, rmarkdown, rpart, RSNNS,
sparkline, sparklyr, testthat, varImp, xgboost
DT, C50, caret, Ckmeans.1d.dp, covr, Cubist, doParallel,
dplyr, earth, fastshap, gbm, glmnet, h2o, htmlwidgets, keras,
knitr, lattice, mlbench, mlr, mlr3, neuralnet, NeuralNetTools,
nnet, parsnip, party, partykit, pdp, pls, randomForest, ranger,
rmarkdown, rpart, RSNNS, sparkline, sparklyr (>= 0.8.0),
tinytest, varImp, xgboost
testthat, beeswarm, lattice, ggplot2, beanplot, vioplot
testthat, beeswarm, lattice, ggplot2, beanplot, vioplot,
ggbeeswarm,
hexbin (>= 1.27.0), scales, MASS, knitr, dichromat,
colorspace
hexbin (>= 1.27.0), scales, MASS, knitr, dichromat,
colorspace, rasterVis, httr, mapproj
hexbin (>= 1.27.0), scales, MASS, knitr, dichromat,
colorspace, rasterVis, httr
hexbin (>= 1.27.0), scales, MASS, knitr, dichromat,
colorspace, rasterVis, httr, mapproj, vdiffr, svglite (>=
1.2.0), testthat, covr, rmarkdown
hexbin (>= 1.27.0), scales, MASS, knitr, dichromat,
colorspace, rasterVis, httr, mapproj, vdiffr, svglite (>=
1.2.0), testthat, covr, rmarkdown, rgdal
hexbin (>= 1.27.0), scales, MASS, knitr, dichromat,
colorspace, raster, rasterVis, httr, mapproj, vdiffr, svglite
(>= 1.2.0), testthat, covr, rmarkdown, rgdal, maps
hexbin (>= 1.27.0), ggplot2 (>= 1.0.1), testthat, covr
knitr, rmarkdown, nycflights13, testthat, covr, jsonld,
dplyr, spelling
knitr, igraph, rpart, shiny, shinyWidgets, colourpicker
knitr, igraph, rpart, shiny, shinyWidgets, colourpicker,
sparkline, ggraph, flashClust
knitr, rmarkdown, webshot, igraph, rpart, shiny,
shinyWidgets, colourpicker, sparkline, ggraph, flashClust
knitr, rmarkdown, webshot, igraph, rpart, shiny,
shinyWidgets, colourpicker, sparkline, ggraph, tidygraph,
flashClust
covr, testthat (>= 2.1.0), vdiffr, knitr, rmarkdown, forcats,
glue, tibble, data.table
covr, data.table, DT, forcats, gt (>= 0.3.0), knitr, learnr,
lifecycle, rmarkdown, rsconnect, shiny, spelling, testthat (>=
2.1.0), tibble, tidycmprsk (>= 0.1.1), vdiffr
devtools, testthat, flux, knitr, rmarkdown, stringi
dplyr, knitr, rmarkdown, tibble, tidyverse
knitr, rmarkdown, testthat (>= 2.1.0), pracma
knitr, rmarkdown, Cairo, testthat (>= 2.1.0), pracma, covr
plotly (>= 4.5.6), testthat, knitr, rmarkdown, vdiffr
testthat, knitr, rmarkdown, vdiffr, gdtools
testthat, plotly (>= 4.5.6), knitr, rmarkdown, vdiffr,
gdtools, spelling
rgl, survival, MASS, nlme, splines, lme4
rgl, survival, MASS, nlme, splines, lme4, randomForest
rgl, MASS, survival, knitr, ggplot2, Matrix
ggplot2, knitr, rmarkdown, devtools, testthat, covr, purrr
ggplot2, knitr, rmarkdown, devtools, testthat, covr, purrr,
dplyr
knitr, rmarkdown, devtools, testthat, covr, purrr
knitr, rmarkdown, testthat (>= 3.0.0), covr, highcharter (>
0.1.0)
prettydoc, knitr, testthat (>= 3.0.0), covr, highcharter (>
0.1.0)
prettydoc, knitr, rmarkdown, testthat (>= 3.0.0), covr,
highcharter (> 0.1.0)
testthat, knitr, rmarkdown, shinyBS, shinycssloaders,
shinythemes
covr, knitr, rmarkdown, testthat, vdiffr, xplorerr
bibtex, covr, rorcid, testthat, stringr, htmltools
covr, rorcid, testthat, stringr, htmltools
covr, rorcid, testthat, stringr, htmltools, webshot, pdftools
intergraph (>= 2.0-2), network (>= 1.12.0), sna (>= 2.3-2),
mlr, MASS, tidymodels, e1071, gridExtra, lemon, mlr3,
mlr3learners, sp, scales, ranger, vip, knitr, rmarkdown,
randomForest, testthat (>= 3.0.0), labeling, zenplots, covr
knitr, rmarkdown, DALEX, mlbench, randomForest, gridExtra,
grid, lattice, testthat
knitr, rmarkdown, mlbench, randomForest, gridExtra, grid,
lattice, testthat
knitr, rmarkdown, mlbench, randomForest, gridExtra, grid,
lattice, testthat, ingredients
stringr, tm, plyr, dplyr, reshape2, jpeg, igraph, rgexf,
httpuv
stringr, tm, plyr, dplyr, reshape2, jpeg, igraph, rgexf,
httpuv, mongolite
dplyr, ggplot2, parallel, rmarkdown, spcadjust (>= 1.1),
tidyr, testthat
dplyr, ggplot2, parallel, rmarkdown, spcadjust (>= 1.1),
testthat, tidyr
ggplot2, rmarkdown, spcadjust (>= 1.1), testthat, knitr
knitr, rmarkdown, testthat (>= 3.0.0), ssh
DESeq2, edgeR, limma, qvalue, SummarizedExperiment, knitr,
rmarkdown, kableExtra, usethis
DESeq2, edgeR, limma, qvalue, SummarizedExperiment, knitr,
rmarkdown, kableExtra, usethis, easylabel
dplyr, tidyr, knitr, rmarkdown, ggplot2, diverse, geosphere,
foreign, tibble
testthat (>= 3.0.0), nlme, knitr, covr, gridExtra, rgdal,
rmarkdown, rnaturalearth, rnaturalearthdata, tibble
testthat (>= 3.0.0), nlme, knitr, covr, gridExtra, lattice,
rgdal, rmarkdown, rnaturalearth, rnaturalearthdata, sp, tibble
devtools, gridExtra, knitr, rmarkdown, roxygen2, testthat
knitr, rmarkdown, testthat, tictoc, tidyr, tidytext
knitr, rmarkdown, stopwords, testthat, tictoc, tidyr,
tidytext
httpuv, igraph (>= 1.2.2), knitr, readr, rmarkdown,
robotstxt, rtweet (>= 1.0.2), rvest, stopwords, testthat,
tidytext, urltools, xml2
knitr, rmarkdown, testthat, akima, markdown
knitr (>= 1.28), rmarkdown (>= 2.1), testthat
bench (>= 1.0.2), covr, curl, dplyr, forcats, fs, ggplot2,
knitr, prettyunits, purrr, readr (>= 1.3.1), rmarkdown, scales,
spelling, testthat, tidyr
bench (>= 1.0.2), covr, curl, dplyr, forcats, fs, ggplot2,
knitr, prettyunits, purrr, readr (>= 1.3.1), rmarkdown,
rstudioapi, scales, spelling, testthat, tidyr
bench (>= 1.1.0), covr, curl, dplyr, forcats, fs, ggplot2,
knitr, patchwork, prettyunits, purrr, readr (>= 1.3.1),
rmarkdown, rstudioapi, scales, spelling, testthat, tidyr, xml2
bench (>= 1.1.0), covr, curl, dplyr, forcats, fs, ggplot2,
knitr, patchwork, prettyunits, purrr, readr (>= 1.3.1),
rmarkdown, rstudioapi, scales, spelling, testthat (>= 2.1.0),
tidyr, xml2
bench (>= 1.1.0), covr, curl, dplyr, forcats, fs, ggplot2,
knitr, patchwork, prettyunits, purrr, readr (>= 1.3.1),
rmarkdown, rstudioapi, scales, spelling, testthat (>= 2.1.0),
tidyr, waldo, xml2
bench (>= 1.1.0), covr, curl, dplyr, forcats, fs, ggplot2,
knitr, patchwork, prettyunits, purrr, rmarkdown, rstudioapi,
scales, spelling, testthat (>= 2.1.0), tidyr, waldo, xml2
archive, bench (>= 1.1.0), covr, curl, dplyr, forcats, fs,
ggplot2, knitr, patchwork, prettyunits, purrr, rmarkdown,
rstudioapi, scales, spelling, testthat (>= 2.1.0), tidyr,
waldo, xml2
archive, bench (>= 1.1.0), covr, curl, dplyr, forcats, fs,
ggplot2, knitr, patchwork, prettyunits, purrr, rmarkdown,
rstudioapi, scales, spelling, testthat (>= 2.1.0), tidyr,
utils, waldo, xml2
covr, dplyr, GGally, igraph, igraphdata, knitr, purrr,
rmarkdown, scales, testthat, tidygraph, tidyr
testthat, knitr, parallel, rmarkdown, dplyr
testthat, knitr, parallel, rmarkdown, dplyr, ggplot2
testthat, knitr, parallel, rmarkdown, dplyr, ggplot2, RSQLite
testthat, knitr, parallel, rmarkdown, data.table, dplyr,
ggplot2, RSQLite, datasets, stats
testthat, knitr, parallel, rmarkdown, dplyr, ggplot2,
RSQLite, datasets, stats
testthat, knitr, parallel, rmarkdown, dplyr, ggplot2,
RSQLite, datasets
testthat, knitr, parallel, rmarkdown, data.table, dplyr,
ggplot2, DBI, RSQLite, datasets
rquery (>= 0.5.0), rqdatatable, testthat, knitr, parallel,
rmarkdown, data.table, ggplot2, DBI, RSQLite, datasets
rquery (>= 0.5.0), rqdatatable, testthat, knitr, rmarkdown,
data.table, ggplot2, DBI, RSQLite, datasets
rquery (>= 0.6.2), rqdatatable (>= 0.1.4), testthat, knitr,
rmarkdown, data.table (>= 1.11.4), ggplot2, DBI, RSQLite,
datasets
rquery (>= 1.1.1), rqdatatable (>= 1.1.1), testthat, knitr,
rmarkdown, data.table (>= 1.11.4), ggplot2, DBI, RSQLite,
datasets, R.rsp
rquery (>= 1.2.1), rqdatatable (>= 1.1.2), isotone, lme4,
testthat, knitr, rmarkdown, data.table (>= 1.11.4), ggplot2,
DBI, RSQLite, datasets, R.rsp
rquery (>= 1.3.0), rqdatatable (>= 1.1.2), isotone, lme4,
knitr, rmarkdown, data.table (>= 1.11.4), ggplot2, DBI,
RSQLite, datasets, R.rsp, RUnit
rquery (>= 1.3.2), rqdatatable (>= 1.1.4), isotone, lme4,
knitr, rmarkdown, data.table (>= 1.11.4), DBI, RSQLite,
datasets, R.rsp, RUnit
rquery (>= 1.3.2), rqdatatable (>= 1.1.5), isotone, lme4,
knitr, rmarkdown, data.table (>= 1.11.4), DBI, RSQLite,
datasets, R.rsp, RUnit
rquery (>= 1.3.5), rqdatatable (>= 1.1.8), isotone, lme4,
knitr, rmarkdown, data.table (>= 1.11.4), DBI, RSQLite,
datasets, R.rsp, RUnit
rquery (>= 1.3.6), rqdatatable (>= 1.1.9), isotone, lme4,
knitr, rmarkdown, data.table (>= 1.11.4), DBI, RSQLite,
datasets, R.rsp, RUnit
rquery (>= 1.3.8), rqdatatable (>= 1.2.2), isotone, lme4,
knitr, rmarkdown, data.table (>= 1.11.4), DBI, RSQLite,
datasets, R.rsp, RUnit
rquery (>= 1.3.9), rqdatatable (>= 1.2.3), isotone, lme4,
knitr, rmarkdown, data.table (>= 1.11.4), DBI, RSQLite,
datasets, R.rsp, RUnit
rquery (>= 1.4.0), rqdatatable (>= 1.2.4), isotone, lme4,
knitr, rmarkdown, data.table (>= 1.11.4), DBI, RSQLite,
datasets, R.rsp, RUnit
rquery (>= 1.4.1), rqdatatable (>= 1.2.5), data.table (>=
1.12.2), isotone, lme4, knitr, rmarkdown, parallel, DBI,
RSQLite, datasets, R.rsp, RUnit
rquery (>= 1.4.3), rqdatatable (>= 1.2.6), data.table (>=
1.12.2), isotone, lme4, knitr, rmarkdown, parallel, DBI,
RSQLite, datasets, R.rsp, RUnit
rquery (>= 1.4.4), rqdatatable (>= 1.2.7), data.table (>=
1.12.2), isotone, lme4, knitr, rmarkdown, parallel, DBI,
RSQLite, datasets, R.rsp, RUnit
rquery (>= 1.4.5), rqdatatable (>= 1.2.8), data.table (>=
1.12.2), isotone, lme4, knitr, rmarkdown, parallel, DBI,
RSQLite, datasets, R.rsp, tinytest
rquery (>= 1.4.6), rqdatatable (>= 1.2.9), data.table (>=
1.12.2), isotone, lme4, knitr, rmarkdown, parallel, DBI,
RSQLite, datasets, R.rsp, tinytest
knitr, rmarkdown, lattice, captioner, doBy
knitr, rmarkdown, testthat (>= 3.0.0), colorspace, viridis,
rstudioapi
cli, rstudioapi, colorspace, viridis, knitr, rmarkdown,
testthat (>= 3.0.0)
testthat (>= 3.0.0), covr, R6, withr, xml2
covr, R6, testthat (>= 3.0.0), withr, xml2
knitr (>= 1.11), rmarkdown (>= 0.8.1), testthat
diagis, gridExtra, knitr (>= 1.11), rmarkdown (>= 0.8.1),
testthat
testthat, knitr, grid, gridExtra, rmarkdown
knitr, ggplot2, rmarkdown, ape, bioacoustics
knitr, ggplot2, rmarkdown, ape, bioacoustics, Rraven
knitr, ggplot2, rmarkdown, jpeg, ape, bioacoustics, soundgen,
wavethresh
knitr, ggplot2, rmarkdown, jpeg, ape, bioacoustics, soundgen,
wavethresh, png
knitr, ggplot2, rmarkdown, jpeg, ape, bioacoustics, soundgen,
wavethresh, png, pracma, Sim.DiffProc, maps, leaflet
knitr, ggplot2, rmarkdown, jpeg, ape, soundgen, wavethresh,
png, pracma, Sim.DiffProc, maps, leaflet, svMisc
ggplot2, rmarkdown, jpeg, ape, soundgen, wavethresh, png,
pracma, Sim.DiffProc, maps, leaflet, svMisc, kableExtra
ggplot2, rmarkdown, jpeg, ape, soundgen, wavethresh, png,
pracma, Sim.DiffProc, maps, leaflet, kableExtra
testthat, knitr, tibble, rmarkdown, covr
testthat, knitr, tibble, rmarkdown, covr, tmap, tmaptools,
OpenStreetMap, sf
covr, knitr, markdown, rmarkdown, testthat
testthat, knitr, rmarkdown, deSolve, dplyr, colorRamps,
ggplot2, gridExtra, latticeExtra, bindrcpp
covr, dplyr, ggplot2, sfdep, spelling, testthat (>= 3.0.0),
tidymodels, tidyr
applicable, covr, dplyr, ggplot2, recipes, sfdep,
spatialsample, spelling, testthat (>= 3.0.0), tidymodels,
tidyr, vip
modi, robustbase, robustX (>= 1.2-5), cellWise, knitr,
rmarkdown
spelling, knitr, rmarkdown, tidyverse, lemon
timeSeries, FitARMA, testthat, knitr, rmarkdown, renv
timeSeries, testthat, knitr, rmarkdown, renv
devtools, ggplot2, ggmap, knitr, rmarkdown, sp, stringr,
testthat
devtools, ggplot2, ggmap, knitr, lutz, rmarkdown, sf, sp,
stringr, testthat
devtools, ggplot2, ggmap, htmltools, knitr, leaflet, lutz,
naniar, rmarkdown, sf, sp, stringr, testthat
devtools, ggplot2, ggmap, htmltools, knitr, leaflet, lutz,
naniar, rmarkdown, sf, sp, testthat
devtools, ggplot2, ggmap, htmltools, knitr, leaflet, lutz,
mockery, naniar, rmarkdown, sf, sp, testthat
devtools, ggplot2, htmltools, knitr, leaflet, lutz, naniar,
rmarkdown, sf, sp, testthat, vcr
devtools, ggplot2, htmltools, knitr, leaflet, lutz, mockery,
naniar, rmarkdown, sf, sp, testthat, vcr
devtools, ggplot2, htmltools, knitr, leaflet, lutz, mockery,
naniar, rmarkdown, sf, sp, testthat, vcr (>= 1.0.2)
knitr, rmarkdown, reshape2, devtools, loo, randomForest,
network, sna, scales, intergraph
testthat, rcdk, covr, robotstxt, knitr, rmarkdown
testthat, rcdk, covr, robotstxt, knitr, rmarkdown,
plot.matrix, usethis
testthat, rcdk, covr, robotstxt, knitr, rmarkdown,
plot.matrix, usethis, vcr
callr, curl, glue, jsonlite, httr, httpuv, testthat (>=
3.0.0), withr, xml2
roxygen2 (>= 6.0.1), testthat, xml2, vcr
roxygen2 (>= 6.0.1), testthat, xml2, vcr, httr
roxygen2 (>= 6.1.1), testthat, xml2, vcr, httr
roxygen2 (>= 7.0.2), testthat, xml2, vcr, httr
shiny, shinyjs, shinydashboard, shinyWidgets, DT, gifski,
testthat, usethis, rmarkdown, covr
iptools, urltools, rgeolocate, knitr, testthat
httpuv, knitr, rmarkdown, shiny, testthat (>= 3.0.0)
crayon (>= 1.3.4), curl, DBI, ggplot2, ggrepel, httr (>=
0.5), purrr (>= 0.3.0), rmarkdown, RSQLite, stats, stringi,
testthat, tibble (>= 3.0), xml2 (>= 1.3)
crayon (>= 1.3.4), curl, DBI, ggplot2, ggrepel, httr (>=
0.5), knitr, rmarkdown, RSQLite, stats, stringi, testthat,
tibble (>= 3.0), tictoc, xml2 (>= 1.3)
knitr, rmarkdown, leaflet (>= 1.0.0), testthat
MASS, nloptr, pso, rgenoud, snow, doSNOW, foreach, parallel
MASS, nloptr, pso, rgenoud, rgdal, snow, doSNOW, foreach,
parallel
magrittr, ggplot2, kableExtra, testthat, covr, knitr,
rmarkdown
knitr, rmarkdown, fansi, collapsibleTree, testthat, shiny,
miniUI, datapasta, rstudioapi, htmltools, readr, anomalize,
ggforce, ggtext, forcats, covr
knitr, rmarkdown, testthat, raster, rgdal
covr, httr, knitr, lubridate, rmarkdown, testthat
dplR, imager, jsonlite, jpeg, png, plotly, shinyFiles,
shinyjs, shinythemes, raster, rgdal, readr, readxl, sp,
testthat, tiff, tibble, tools, zoo
ggraph, igraph, gapminder, testthat, covr, knitr,
topicmodels, janeaustenr, rmarkdown, unvotes (>= 0.2.0),
countrycode, fuzzyjoin, ggplot2, maps
ggraph, igraph, gapminder, testthat, covr, knitr,
topicmodels, janeaustenr, rmarkdown, unvotes (>= 0.2.0),
countrycode, fuzzyjoin, ggplot2, maps, irlba
ggraph, igraph, gapminder, testthat, covr, knitr,
janeaustenr, rmarkdown, unvotes (>= 0.2.0), countrycode,
fuzzyjoin, ggplot2, maps, irlba
ggraph, igraph, testthat, covr, knitr, janeaustenr,
rmarkdown, unvotes (>= 0.3.0), countrycode, fuzzyjoin, ggplot2,
maps, irlba
countrycode, covr, fuzzyjoin, gapminder, ggplot2, ggraph,
igraph, irlba, janeaustenr, knitr, maps, rmarkdown, testthat,
unvotes (>= 0.3.0)
testthat, knitr, ggplot2, devtools, dplyr, magrittr,
AnomalyDetection, BreakoutDetection,
testthat, knitr, ggplot2, devtools, dplyr, magrittr,
AnomalyDetection, BreakoutDetection, cranlogs
testthat, knitr, ggplot2, devtools, dplyr, magrittr, cranlogs
knitr, rmarkdown, ggplot2, tidyr, tidytext, widyr, SnowballC,
ggraph, igraph
dplyr, stringr, knitr, rmarkdown, ggplot2, tidyr, tidytext,
widyr, SnowballC, ggraph, igraph
dplyr, stringr, knitr, rmarkdown, ggplot2, tidyr, tidytext,
stopwords, widyr, SnowballC, ggraph, igraph
adehabitatHR, ggplot2, GGally, igraph, network, knitr,
rmarkdown, nlme
adehabitatHR, ggplot2, GGally, igraph, network, knitr, rgeos,
rmarkdown, nlme
testthat (>= 3.0.0), knitr, rmarkdown, ggplot2, covr, mockery
testthat (>= 3.0.0), knitr, rmarkdown, ggplot2, covr,
mockery, future, future.apply, parallelly
knitr, rmarkdown, testthat, vdiffr, stringi
knitr, rmarkdown, testthat, stringi, utils
DBI, knitr, magrittr, purrr, rlang, rmarkdown, RSQLite,
testthat, vctrs
DBI, knitr, magrittr, purrr, rlang (>= 0.4.8), rmarkdown,
RSQLite, testthat (>= 3.0.0), vctrs
DBI, knitr, magrittr, purrr, rlang (>= 0.4.8), rmarkdown,
RSQLite, testthat, vctrs
testthat, rgdal, rgeos, stars, leaflet, ggplot2, gstat,
rworldmap
testthat, rnrfa, httr, jsonlite, curl, knitr, rmarkdown, zoo
testthat, utf8, rnrfa, httr, jsonlite, curl, knitr,
rmarkdown, zoo
testthat, covr, lattice, DBI, RSQLite, methods, knitr,
rmarkdown
covr, DBI, knitr, lattice, methods, rmarkdown, RSQLite,
testthat (>= 2.1.0)
callr, covr, DBI, knitr, lattice, methods, rmarkdown,
RSQLite, testthat (>= 3.0.0)
callr, covr, DBI, knitr, lattice, methods, rlang, rmarkdown
(>= 2.12), RSQLite, testthat (>= 3.0.0)
testthat (>= 3.0.0), vctrs (>= 0.3.0), wkutils, sf, tibble
testthat (>= 3.0.0), vctrs (>= 0.3.0), sf, tibble
testthat (>= 3.0.0), vctrs (>= 0.3.0), sf, tibble, readr
knitr, rmarkdown, testthat, AER, plm, prais, stargazer
AER, knitr, plm, prais, rmarkdown, stargazer, testthat
AER, knitr, plm, prais, rmarkdown, stargazer, tinytest
knitr, quantmod, rmarkdown, stargazer, tinytest, xts, zoo
remotes, renv, knitr, missRanger, testthat (>= 2.1.0)
papaja, remotes, knitr, missRanger, testthat (>= 2.1.0)
remotes, tinytex, renv, knitr, missRanger, testthat (>=
2.1.0)
ggplot2, knitr, recipes, rmarkdown, testthat (>= 3.0.0),
tidymodels, tune, xgboost
covr, ggplot2, knitr, readr, recipes, rmarkdown, testthat (>=
3.0.0), tidymodels, tune, xgboost
forcats, ggplot2, knitr, readr, recipes, rmarkdown, scales,
testthat (>= 3.0.0), tidymodels, tune, xgboost
clipr, covr, devtools, miniUI (>= 0.1.1), shiny (>= 0.13),
spelling, testthat, withr
covr, knitr, recipes, rmarkdown, testthat (>= 2.3.0)
covr, knitr, magrittr, modeldata (>= 0.0.2), recipes,
rmarkdown, testthat (>= 2.3.0)
butcher (>= 0.1.3), covr, knitr, magrittr, modeldata (>=
0.0.2), recipes, rmarkdown, testthat (>= 3.0.0)
butcher (>= 0.1.3), covr, dials (>= 0.1.0), knitr, magrittr,
modeldata (>= 0.0.2), recipes (>= 0.2.0), rmarkdown, testthat
(>= 3.0.0)
butcher (>= 0.2.0), covr, dials (>= 1.0.0), knitr, magrittr,
modeldata (>= 1.0.0), recipes (>= 1.0.0), rmarkdown, testthat
(>= 3.0.0)
spelling, recipes (>= 0.1.15), modeldata, parsnip, testthat
(>= 3.0.0), covr, yardstick, dials, kknn, knitr, rmarkdown
covr, dials, kknn, knitr, modeldata, parsnip, recipes (>=
0.1.15), rmarkdown, spelling, testthat (>= 3.0.0), yardstick
covr, dials, kknn, knitr, modeldata, parsnip (>= 0.2.0),
recipes (>= 0.1.15), rmarkdown, spelling, testthat (>= 3.0.0),
yardstick
covr, dials (>= 0.1.0), kknn, knitr, modeldata, recipes (>=
1.0.0), rmarkdown, spelling, testthat (>= 3.0.0), yardstick (>=
1.0.0)
testthat (>= 2.1.1), knitr, rmarkdown, dplyr, ggplot2,
magrittr, purrr, tidyr
roxygen2 (>= 5.0.1), knitr, rmarkdown, testthat, covr
roxygen2 (>= 6.1.0), knitr, testthat, vcr (>= 0.2.0)
roxygen2 (>= 6.1.1), knitr, testthat, vcr (>= 0.2.0)
roxygen2 (>= 7.1.0), knitr, rmarkdown, testthat, vcr (>=
0.2.0)
magick, emoji, rvest, english, knitr, rmarkdown
knitr, extrafont, leiden, lifecycle, fst, glue
knitr, extrafont, leiden, lifecycle, fst, glue,
flexdashboard, lmtest, portes, sandwich
knitr, extrafont, leiden, lifecycle, fst, glue,
flexdashboard, lmtest, sandwich
knitr, extrafont, leiden, lifecycle, fst, glue,
flexdashboard, lmtest, sandwich, testthat (>= 3.0.0)
wpp2017, wpp2015, wpp2012, wpp2010, testthat
limma, FactoMineR, factoextra, sm, knitr, rmarkdown
dplyr, factoextra, FactoMineR, knitr, limma, rmarkdown, sm
BBmisc, boot, coin, data.tree, fdrtool, flexclust, limma,
mixdist, NbClust, preprocessCore, RColorBrewer, RODBC, som,
stringi, VGAM, xlsx
BBmisc, boot, coin, data.table, data.tree, fdrtool,
flexclust, knitr, limma, markdown, mixdist, NbClust,
preprocessCore, qvalue, Rcpp, RColorBrewer, readxl, rmarkdown,
som, stringi, VGAM, vsn, wrGraph
BBmisc, boot, coin, data.tree, fdrtool, flexclust, knitr,
limma, mixdist, NbClust, preprocessCore, RColorBrewer,
rmarkdown, som, stringi, utils, VGAM, vsn, xlsx
BBmisc, boot, coin, data.tree, fdrtool, flexclust, knitr,
limma, mixdist, NbClust, preprocessCore, RColorBrewer,
rmarkdown, som, stringi, utils, VGAM, vsn, wrGraph, xlsx
BBmisc, boot, coin, data.tree, fdrtool, flexclust, knitr,
limma, mixdist, NbClust, preprocessCore, qvalue, RColorBrewer,
rmarkdown, som, stringi, utils, VGAM, vsn, wrGraph, xlsx
BBmisc, boot, coin, data.tree, fdrtool, flexclust, knitr,
limma, mixdist, NbClust, preprocessCore, qvalue, RColorBrewer,
readxl, rmarkdown, som, stringi, utils, VGAM, vsn, wrGraph
BBmisc, boot, coin, data.tree, fdrtool, flexclust, knitr,
limma, mixdist, NbClust, preprocessCore, qvalue, Rcpp,
RColorBrewer, readxl, rmarkdown, som, stringi, VGAM, vsn,
wrGraph
fdrtool, grDevices, MASS, RColorBrewer, ROTS, readxl
fdrtool, knitr, MASS, RColorBrewer, ROTS, rmarkdown
fdrtool, knitr, MASS, RColorBrewer, ROTS, R.utils, sm, utils,
wrGraph
fdrtool, MASS, RColorBrewer, ROTS, R.utils, sm, utils,
wrGraph
fdrtool, MASS, RColorBrewer, readxl, ROTS, R.utils, sm,
utils, wrGraph
data.table, fdrtool, MASS, RColorBrewer, readxl, ROTS,
rmarkdown, R.utils, sm, wrGraph
data.table, fdrtool, MASS, RColorBrewer, readxl, ROTS,
rmarkdown, R.utils, sm, wrGraph (>= 1.2.4)
data.table, fdrtool, MASS, RColorBrewer, readxl, ROTS,
rmarkdown, R.utils, sm, wrGraph (>= 1.2.5)
data.table, fdrtool, kableExtra, MASS, RColorBrewer, readxl,
ROTS, rmarkdown, R.utils, sm, wrGraph (>= 1.3.0)
BiocParallel, boot, data.tree, fdrtool, knitr, limma,
parallel, preprocessCore, RColorBrewer, rmarkdown, wrGraph
parallel, testthat, knitr, rmarkdown, R.rsp
parallel, knitr, rmarkdown, RUnit, R.rsp
parallel, knitr, graphics, rmarkdown, RUnit, R.rsp
parallel, knitr, graphics, rmarkdown, RUnit, R.rsp, tinytest
parallel, knitr, graphics, rmarkdown, R.rsp, tinytest
compare(>= 0.2.4), rmarkdown, knitr, testthat(>= 0.7.1)
spelling, readxl, nycflights13, testthat, bit64
wrswoR.benchmark (>= 0.1), import, kimisc (>= 0.2-4),
testthat, roxygen2, knitr, rmarkdown, rticles (>= 0.1),
knitcitations, metap, tidyr, microbenchmark, sampling,
BatchExperiments, dplyr, ggplot2, tikzDevice (>= 0.9-1)
BatchExperiments, BiocManager, dplyr, ggplot2, import, kimisc
(>= 0.2-4), knitcitations, knitr, metap, microbenchmark,
rmarkdown, roxygen2, rticles (>= 0.1), sampling, testthat,
tidyr, tikzDevice (>= 0.9-1)
BatchExperiments, dplyr, ggplot2, import, kimisc (>= 0.2-4),
knitcitations, knitr, metap, microbenchmark, rmarkdown,
roxygen2, rticles (>= 0.1), sampling, testthat, tidyr,
tikzDevice (>= 0.9-1)
dplyr, ggplot2, knitr, microbenchmark, rmarkdown, tibble,
tidyr
knitr, mvtnorm, rmarkdown, testthat, vdiffr
bfast, knitr, rmarkdown, roxygen2, testthat
testthat, knitr, rmarkdown, fOptions, CompQuadForm, tensorA
testthat (>= 3.0.0), knitr, rmarkdown, CompQuadForm, tensorA
knitr, rmarkdown, testthat, covr, here, dplyr, magick (>=
2.0)
knitr, rmarkdown, testthat (>= 3.0.4), covr, here, magick (>=
2.0)
coloc, hyprcoloc, knitr, rtracklayer, usethis
knitr, testthat, rmarkdown, shinyBS, shinyAce, shinyTime,
shinyFiles, shinydashboard, shinythemes, plotly
callr, rmarkdown, testthat (>= 2.1.0), xaringan
callr, ggplot2, knitr, rmarkdown, scales, showtext, sysfonts,
testthat (>= 2.1.0), xaringan
callr, ggplot2, knitr, mockery, rmarkdown, scales, showtext,
sysfonts, testthat (>= 2.1.0), xaringan
testit, parallel, rstudioapi, tinytex, mime, markdown, knitr,
htmltools, base64enc, remotes, rmarkdown
testit, parallel, codetools, rstudioapi, tinytex, mime,
markdown, knitr, htmltools, base64enc, remotes, rmarkdown
testit, parallel, codetools, rstudioapi, tinytex, mime,
markdown, knitr, htmltools, remotes, rmarkdown
testit, parallel, codetools, rstudioapi, tinytex, mime,
markdown, knitr, htmltools, remotes, pak, rmarkdown
testit, parallel, rstudioapi, tinytex, mime, markdown, knitr,
rmarkdown
testit, parallel, codetools, rstudioapi, tinytex (>= 0.30),
mime, markdown, knitr, htmltools, remotes, pak, rmarkdown
testit, parallel, codetools, rstudioapi, tinytex (>= 0.30),
mime, markdown, knitr, htmltools, remotes, pak, renv, curl,
jsonlite, rmarkdown
testit, parallel, codetools, rstudioapi, tinytex (>= 0.30),
mime, markdown, knitr, htmltools, remotes, pak, rhub, renv,
curl, jsonlite, rmarkdown
testit, parallel, codetools, rstudioapi, tinytex (>= 0.30),
mime, markdown, knitr, htmltools, remotes, pak, rhub, renv,
curl, jsonlite, magick, rmarkdown
testit, parallel, rstudioapi, tinytex, mime, markdown, knitr,
htmltools, base64enc, rmarkdown
knitr, rmarkdown, ggplot2 (>= 1.0.1), DiagrammeR (>= 0.8.1),
Ckmeans.1d.dp (>= 3.3.1), vcd (>= 1.3), testthat, igraph (>=
1.0.1)
knitr, rmarkdown, ggplot2 (>= 1.0.1), DiagrammeR (>= 0.9.0),
Ckmeans.1d.dp (>= 3.3.1), vcd (>= 1.3), testthat, igraph (>=
1.0.1)
knitr, rmarkdown, ggplot2 (>= 1.0.1), DiagrammeR (>= 0.9.0),
Ckmeans.1d.dp (>= 3.3.1), vcd (>= 1.3), testthat, lintr, igraph
(>= 1.0.1)
knitr, rmarkdown, ggplot2 (>= 1.0.1), DiagrammeR (>= 0.9.0),
Ckmeans.1d.dp (>= 3.3.1), vcd (>= 1.3), testthat, lintr, igraph
(>= 1.0.1), jsonlite, float
knitr, rmarkdown, ggplot2 (>= 1.0.1), DiagrammeR (>= 0.9.0),
Ckmeans.1d.dp (>= 3.3.1), vcd (>= 1.3), testthat, lintr, igraph
(>= 1.0.1), jsonlite, float, crayon
knitr, rmarkdown, ggplot2 (>= 1.0.1), DiagrammeR (>= 0.9.0),
Ckmeans.1d.dp (>= 3.3.1), vcd (>= 1.3), testthat, lintr, igraph
(>= 1.0.1), jsonlite, float, crayon, titanic
knitr, rmarkdown, ggplot2 (>= 1.0.1), DiagrammeR (>= 0.9.0),
Ckmeans.1d.dp (>= 3.3.1), vcd (>= 1.3), testthat, lintr, igraph
(>= 1.0.1), float, crayon, titanic
xgobi must be installed additionally,
see file README, or INSTALL.windows under Windows
xgobi must be installed additionally, see ./README.
caTools, gridExtra, knitr, rmarkdown, RxODE, stringr,
testthat, tidyr
caTools, gridExtra, knitr, rmarkdown, testthat, tidyr
caTools, gridExtra, knitr, pkgdown, rmarkdown, testthat,
tidyr
knitr, rmarkdown, spelling, testthat (>= 2.1.0)
rprojroot, testthat, covr, tibble, knitr, rmarkdown,
RefManageR
rprojroot, testthat, covr, tibble, knitr, rmarkdown
testthat, curl, covr, knitr, rmarkdown, magrittr, httr
covr, curl, httr, knitr, magrittr, mockery, rmarkdown,
testthat (>= 2.1.0)
testthat, knitr, rmarkdown, ChemmineR, covr, fmcsR
blorr, descriptr, DT, grid, haven, highcharter, inferr,
jsonlite, kableExtra, olsrr, plotly, rbokeh, readr, readxl,
rfm, shinyBS, shinycssloaders, shinythemes, tools,
vistributions
blorr, data.table, descriptr, DT, grid, haven, highcharter,
jsonlite, kableExtra, magrittr, olsrr, plotly, rbokeh, readr,
readxl, rfm, shinyBS, shinycssloaders, shinythemes, tools,
vistributions
testthat (>= 3.0.0), withr, knitr, rmarkdown, readxl, DT,
labelled, admiral, devtools, spelling, usethis, lintr, styler
rmarkdown, knitr, testthat, plotly, webshot, mvtnorm
gridExtra, rmarkdown, knitr, testthat, plotly, webshot,
mvtnorm
here, gridExtra, rmarkdown, knitr, testthat, plotly, webshot,
mvtnorm
knitr, rmarkdown, testthat, Matrix, glmnet, doParallel
knitr, rmarkdown, testthat, Matrix, doParallel
ALEPlot, factorMerger, testthat, knitr, rmarkdown,
ResourceSelection, randomForest, e1071, caret, breakDown,
DALEX, xgboost, gridExtra, grid
ALEPlot, factorMerger, testthat, knitr, rmarkdown,
ResourceSelection, randomForest, e1071, caret, breakDown,
DALEX, xgboost, gridExtra, grid, ISLR
knitr, lsmeans, spdep, splm, sphet, plm, zoo, survival
knitr, spdep, splm, sphet, plm, zoo, survival
ggplot2, ggfortify, knitr, lubridate, mapdata, RColorBrewer,
reshape2, testthat, xts
DT, ggplot2, knitr, lubridate, mapdata, RColorBrewer,
reshape2
DT, ggplot2, knitr, lubridate, mapdata, reshape2, rmarkdown,
webshot
timeSeries, timeDate, tseries, chron, fts, tis, RUnit
timeSeries, timeDate, tseries, chron, tis, RUnit
knitr, numDeriv, lbfgs, rmarkdown, testthat, covr
knitr, rmarkdown, textutils, bench, xml2
knitr, markdown, rmarkdown, textutils, bench, xml2, testthat
(>= 3.0.0)
vegan, ccaPP, randomForest, gam, fastICA
vegan, ccaPP, randomForest, gam, fastICA, parallel
vegan, ccaPP, randomForest, gam, fastICA, parallel, gower
covr, dplyr, httptest, testthat (>= 3.0.0)
testthat (>= 2.1.0), magrittr, table1, knitr, rmarkdown,
gridExtra, haven
testthat (>= 2.1.0), dplyr, magrittr, table1
testthat (>= 2.1.0), magrittr, table1, knitr
testthat (>= 2.1.0), magrittr, table1, knitr, rmarkdown
testthat (>= 2.1.0), magrittr, table1, knitr, rmarkdown,
gridExtra
devtools, distill, roxygen2, rmarkdown, covr
covr, devtools, knitr, rmarkdown, roxygen2, testthat
caTools, covr, knitr, rmarkdown, testthat (>= 2.1.0), vdiffr
testthat, covr, purrr, tidyr, ggplot2, knitr, kableExtra,
rmarkdown
covr, crayon, ggplot2, kableExtra, knitr, purrr, rmarkdown,
testthat, tidyr
covr, crayon, ggplot2, knitr, probably (>= 0.0.6), purrr,
rmarkdown, testthat (>= 3.0.0), tidyr
covr, crayon, ggplot2, knitr, probably (>= 0.0.6), rmarkdown,
testthat (>= 3.0.0), tidyr
dplyr, ggtree, knitr, rmarkdown, spelling, testthat (>=
2.1.0)
dplyr, knitr, rmarkdown, spelling, testthat (>= 2.1.0)
testthat (>= 3.0.0), akima, knitr, plotly, rmarkdown,
tidyverse
testthat (>= 3.0.0), knitr, plotly, rmarkdown, tidyverse
knitr, rmarkdown, testthat (>= 3.0.0), ggplot2, covr,
spelling
blogdown, bookdown, covr, knitr, pkgdown, prettydoc,
roxygen2, spelling, testthat, xaringan
blogdown, bookdown, covr, knitr, pkgdown, prettydoc, roxygen2
(>= 7.0.0), spelling, testthat, xaringan
blogdown, bookdown, covr, knitr, miniUI, pkgdown, prettydoc,
roxygen2 (>= 7.0.0), shiny, shinyBS, spelling, testthat (>=
3.0.0), xaringan
ggplot2, knitr, markdown, rmarkdown, dplyr, tidyr, forcats,
janitor, kableExtra
covr, testthat, checkr, knitr, rmarkdown, rstudioapi, tidyr
covr, testthat, knitr, rmarkdown, rstudioapi, tidyr
covr, knitr, rmarkdown, rstudioapi, testthat, tidyr
covr, knitr, readr, rmarkdown, rstudioapi, scales, testthat
(>= 3.0.0), tidyr, usethis, withr
covr, data.tree (>= 0.7), here, testthat
knitr, rmarkdown, testthat, knitcitations, covr
testthat (>= 2.1.0), knitr, rmarkdown, fitdistrplus
testthat, knitr, rmarkdown, purrr, magrittr
knitr, rmarkdown, markdown, devtools, usethis
knitr, rmarkdown, markdown, devtools, usethis, svs, pbapply,
testthat
testthat, covr, knitr, ggetho, damr, xsp
knitr, Rgraphviz, ADGofTest, copula, Matrix, pcaPP, qqtest,
qrmdata, qrmtools, rugarch, zoo, ggplot2
knitr, Rgraphviz, ADGofTest, copula, Matrix, pcaPP, qqtest,
qrmdata, qrmtools, rugarch, zoo, ggplot2, lattice, gridExtra,
scagnostics
loon, knitr, Rgraphviz, ADGofTest, copula, Matrix, pcaPP,
qqtest, qrmdata, qrmtools, rugarch, zoo, ggplot2, lattice,
gridExtra, scagnostics
loon, knitr, rmarkdown, Rgraphviz, ADGofTest, copula, Matrix,
pcaPP, qqtest, qrmdata, qrmtools, rugarch, zoo, ggplot2,
lattice, gridExtra, scagnostics
knitr, rmarkdown, Rgraphviz, ADGofTest, copula, Matrix,
pcaPP, qqtest, qrmdata, qrmtools, rugarch, zoo, ggplot2,
lattice, gridExtra, scagnostics
knitr, rmarkdown, Rgraphviz, ADGofTest, copula, Matrix,
pcaPP, qqtest, qrmdata, qrmtools, rugarch, zoo, ggplot2,
lattice, gridExtra, scagnostics, testthat
testthat (>= 3.0.0), dplyr, MASS, estimatr,
knitr, rmarkdown, markdown, readr, tidycensus
knitr, rmarkdown, markdown, readr, testthat (>= 3.0.0), covr
knitr, rmarkdown, markdown, readr, testthat (>= 3.0.0), covr,
tibble
kableExtra, knitr, rmarkdown, survival, testthat
roxygen2, rmarkdown, testthat, tibble, dplyr, knitr, desc,
purrr, stringr, rprojroot
knitr, rasterVis, rmarkdown, testthat, zdat (>= 0.1.0)
knitr, rmarkdown, tmap, tmaptools, pct, dplyr, lwgeom,
leaflet, covr
knitr, rmarkdown, tmap, tmaptools, pct, dplyr, lwgeom,
leaflet, covr, bookdown
chron, fBasics, its, tseries, strucchange, quantreg, DAAG
chron, fCalendar, its, tseries, strucchange, DAAG
chron, fCalendar, its, tseries, lattice, strucchange, DAAG
chron, fCalendar, its, tseries, lattice, strucchange, DAAG, xts
chron, fCalendar, fSeries, its, tseries, lattice, strucchange, DAAG, xts
chron, fCalendar, fSeries, its, tseries, lattice,
strucchange, DAAG, xts
chron, DAAG, fCalendar, fSeries, its, lattice, strucchange,
timeDate, timeSeries, tseries, xts
coda, chron, DAAG, fame, fCalendar, fSeries, fts, its,
lattice, strucchange, timeDate, timeSeries, tseries, xts
coda, chron, DAAG, fCalendar, fSeries, fts, its, lattice,
strucchange, timeDate, timeSeries, tis, tseries, xts
coda, chron, DAAG, fts, its, lattice, ggplot2, mondate,
scales, strucchange, timeDate, timeSeries, tis, tseries, xts
coda, chron, DAAG, fts, its, ggplot2, mondate, scales,
strucchange, timeDate, timeSeries, tis, tseries, xts
coda, chron, DAAG, fts, ggplot2, mondate, scales,
strucchange, timeDate, timeSeries, tis, tseries, xts
coda, chron, DAAG, fCalendar, fSeries, fts, its, lattice,
mondate, strucchange, timeDate, timeSeries, tis, tseries, xts
coda, chron, DAAG, fts, its, lattice, mondate, strucchange,
timeDate, timeSeries, tis, tseries, xts
coda, chron, DAAG, fts, its, lattice, ggplot2, mondate,
strucchange, timeDate, timeSeries, tis, tseries, xts
AER, coda, chron, fts, ggplot2 (>= 3.0.0), mondate, scales,
stinepack, strucchange, timeDate, timeSeries, tis, tseries, xts
AER, coda, chron, ggplot2 (>= 3.0.0), mondate, scales,
stinepack, strucchange, timeDate, timeSeries, tis, tseries, xts
AER, coda, chron, fts, ggplot2 (>= 3.0.0), mondate, scales,
strucchange, timeDate, timeSeries, tis, tseries, xts
testthat, knitr, rmarkdown, ggplot2, stats
testthat, knitr, rmarkdown, shiny, shinythemes
testthat, knitr, rmarkdown, shiny, shinythemes, covr
testthat, knitr, rmarkdown, shinythemes, covr
MASS, survival, testthat, knitr, moonBook
MASS, survival, testthat, knitr, moonBook, magrittr
MASS, survival, testthat, knitr, rmarkdown
MASS, moonBook, survival, testthat, knitr, rmarkdown
knitr, dplyr, ggplot2, rmarkdown, testthat, tidyr(>= 1.0.0)
httptest, roxygen2, testthat, knitr, rmarkdown
MASS, Matrix, SuppDists, methods, stats4
codetools, methods, xml2, curl, commonmark
codetools, methods, xml2, curl, commonmark, knitr, xfun, mathjaxr
cluster, e1071, ipred, randomForest, gpls, pamr, rpart, MASS, nnet,
ALL, gbm, mlbench
hgu95av2, genefilter, Biostrings, rae230a, rae230aprobe, tkWidgets, XML (>= 0.92-2), reposTools, hsahomology, xlahomology, GO
Biobase, survival, vsn, golubEsets, KEGG, hu6800
gtkDevice, graph, Rgraphviz, genefilter, Biobase, RGtk
RColorBrewer, geneplotter, MASS, locfit, KernSmooth, rrcov, XML
cluster, e1071, ipred, randomForest, gpls, pamr, rpart, MASS, nnet,
ALL, gbm, mlbench, hgu95av2, som
Rgraphviz, hgu95av2, fibroEset, hu6800, hgu133a, GO, KernSmooth, RColorBrewer
affy, affydata, marray, multtest, limma, hgu95av2cdf
Biobase, globaltest, golubEsets, hu6800, vsn
cluster, e1071, ipred, randomForest, gpls, pamr, rpart,
MASS, nnet, ALL, gbm, mlbench, hgu95av2, som, RColorBrewer, hu6800,
golubEsets, sma
hgu95av2, genefilter, Biostrings, rae230a, rae230aprobe,
tkWidgets, XML (>= 0.92-2), hsahomology, xlahomology, GO
Rgraphviz, hgu95av2, fibroEset, hu6800, hgu133a, GO,
KernSmooth, RColorBrewer
cclust, cluster, GO, YEAST, tcltk, GOstats, hgu95av2, genefilter
Biobase, globaltest, multtest, golubEsets, hu6800, vsn
tkWidgets (>= 1.2.2), affydata, geneplotter
EBarrays, ALL, Rgraphviz, RColorBrewer, hgu95av2, xtable
hgu95av2 (>= 1.13.0), ALL, multtest, genefilter,
RColorBrewer, Rgraphviz, xtable
class, cluster, e1071, ipred, randomForest, gpls, pamr, rpart,
MASS, nnet, ALL, gbm, mlbench, hgu95av2, som, RColorBrewer, hu6800,
golubEsets, sma
hgu95av2, genefilter, Biostrings (>= 2.1.2), rae230a, rae230aprobe,
tkWidgets, XML (>= 0.92-2), hsahomology, xlahomology, GO
vsn, golubEsets, KEGG, hu6800, GOstats, Rgraphviz
Biobase, multtest, vsn, marray, limma, arrayMagic
RUnit, BSgenome, BSgenome.Celegans.UCSC.ce2,
BSgenome.Dmelanogaster.FlyBase.r51, hgu95av2probe
EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-3), hgu95av2
hgu95av2 (>= 1.13.0), ALL, multtest, genefilter,
RColorBrewer, Rgraphviz, xtable, SparseM
Biobase, GO, multtest, golubEsets, hu6800, hgu133a, vsn
vsn, golubEsets, KEGG, hu6800, GOstats, Rgraphviz, GO
annotate, GOstats, genefilter, maSigPro, pamr, pdmclass, Rgraphviz, affy ,annaffy, affyPLM,
multtest, ssize, sizepower, siggenes, RankProd, humanLLMappings, mouseLLMappings, ratLLMappings, metaArray
yeastExpData, Matrix, geneplotter, lattice, grid, xtable, Biobase, RColorBrewer
ALL, hgu95av2, genefilter, xtable, multtest, Rgraphviz, hgu133a
simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf,
genefilter, estrogen, annaffy, gcrma
EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6),
hgu95av2.db, Matrix, KEGG.db, GO.db
hgu95av2.db (>= 1.13.0), ALL, multtest, genefilter,
RColorBrewer, Rgraphviz, xtable, SparseM, GO
class, cluster, e1071, ipred, randomForest, gpls, pamr, rpart,
MASS, nnet, ALL, gbm, mlbench, hgu95av2, som, RColorBrewer, hu6800,
golubEsets, sma, ada, keggorth
hgu95av2, hgu95av2.db, genefilter, Biostrings (>= 2.4.4), rae230a,
rae230aprobe, tkWidgets, XML (>= 0.92-2), hsahomology,
xlahomology, GO
beadarray, limma, vsn, lumiBarnes, lumiHumanV1, genefilter, geneplotter, RColorBrewer
amap, annotate, class, e1071, MASS, multtest, OLIN, R2HTML, rgl, som
yeastExpData, geneplotter, lattice, grid, xtable, Biobase, RColorBrewer
faahKO, multtest, rgl, MassSpecWavelet (>= 1.3.1)
vsn, affycoretools, hgug4112a.db, GO.db, marray, gplots,
gtools, gdata
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db,
human.db0, hgu95av2cdf, org.Sc.sgd.db, org.At.tair.db, affy,
KEGG.db, XML, RCurl, RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene,
hom.Hs.inp.db, org.Hs.eg.db
simpleaffy, R2HTML, affydata, affyPLM, genefilter, annaffy,
gcrma, hugene10sttranscriptcluster.db
RUnit, BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.11),
SNPlocs.Hsapiens.dbSNP.20100427, hgu95av2probe, Biobase
Biostrings, GenomicRanges, illuminaHumanv1.db,
illuminaHumanv2.db, illuminaHumanv3.db
rgl, impute, DLBCL, genefilter, xtable, ALL, limma,
hgu95av2.db, XML
Biobase, IRanges, GenomicRanges, AnnotationDbi, oligoClasses,
oligo, affyPLM, flowClust, RUnit
BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=
1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
drosophila2probe, hgu95av2probe, hgu133aprobe, GenomicFeatures
(>= 1.3.14), hgu95av2cdf, affy, affydata (>= 1.11.5), RUnit
MASS, class, nnet, glmnet, e1071, randomForest, plsgenomics,
gbm, mgcv, corpcor, limma, st
EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6),
hgu95av2.db, Matrix, KEGG.db, GO.db, SNPchip, geneplotter,
limma, lattice, graph, Biobase, genefilter, methods
corpcor, fields, graph, KEGGgraph, lattice, marray, RBGL,
rrcov, Rgraphviz, NCIgraph
ALL, hgu95av2.db, biclust, GO.db, KEGG.db, AnnotationDbi,
affy
hgu95av2.db (>= 1.13.0), ALL, GO.db (>= 1.13.0), annotate,
multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM
GSEABase,Category, multtest, ALL, annotate, hgu95av2.db,
genefilter, GOstats, RColorBrewer
limma, qpgraph, RBGL, graph, Rgraphviz, RColorBrewer,
genefilter, mclust, edgeR, GSVAdata
GO.db, KEGG.db, biomaRt, AnnotationDbi, org.Hs.eg.db,
org.Rn.eg.db, org.Mm.eg.db, org.Dm.eg.db
rtracklayer, biomaRt, org.Mm.eg.db, Biostrings, BSgenome,
BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.14),
BSgenome.Celegans.UCSC.ce2, mirbase.db, FDb.UCSC.tRNAs, RUnit,
TxDb.Hsapiens.UCSC.hg18.knownGene
Rsamtools (>= 1.7.42), BSgenome, rtracklayer,
GenomicFeatures, EatonEtAlChIPseq (>= 0.0.3), leeBamViews,
edgeR, DESeq, rtracklayer, org.Sc.sgd.db,
BSgenome.Scerevisiae.UCSC.sacCer2, DEXSeq, pasilla,
pasillaBamSubset, VariantAnnotation, RUnit
Biobase, annotate, GO.db, KEGG.db, golubEsets, hu6800.db,
vsn, GSEABase, Rgraphviz
KEGG.db, GO.db, org.Dm.eg.db, GOstats, org.Ce.eg.db,
org.Mm.eg.db, org.Rn.eg.db, org.Hs.eg.db, snow
Rgraphviz, RBGL, RUnit, RColorBrewer, KEGG.db, org.Hs.eg.db,
hgu133plus2.db, SPIA
class, e1071, ipred, randomForest, gpls, pamr, rpart, MASS,
nnet, ALL, gbm, mlbench, hgu95av2.db, som, RColorBrewer,
hu6800.db, lattice, caret (>= 5.07), golubEsets, ada,
keggorthology, kernlab, mboost, sfsmisc, party
GO.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
org.Cf.eg.db, KEGG.db, annotate, Rgraphviz, GOstats, limma,
mouse4302.db, reactome.db
GOstats, graph, Category, org.Mm.eg.db, microRNA,
targetscan.Mm.eg.db, RSQLite, DBI, AnnotationDbi, clValid,
class, cluster, multtest, RColorBrewer, latticeExtra
GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
quantsmooth, qvalue, samr, limma, caTools, affy,
PREDAsampledata
GenomicRanges, IRanges, BSgenome, gplots, grid, MASS,
gsmoothr, edgeR, DNAcopy, Ringo, aroma.affymetrix, ShortRead,
BSgenome.Hsapiens.UCSC.hg18
rtracklayer (>= 1.3.1), mclust, topGO (>= 1.15.0)
Rsamtools, ShortRead, BSgenome.Dmelanogaster.UCSC.dm3,
GenomicRanges, biomaRt, genomeIntervals
org.Hs.eg.db, org.Mm.eg.db, org.Dm.eg.db, org.Rn.eg.db,
org.Sc.sgd.db,hom.Hs.inp.db, hom.Mm.inp.db, hom.Dm.inp.db,
hom.Rn.inp.db, hom.Sc.inp.db,Rgraphviz, ppiStats, ScISI
ShortRead (>= 1.13.19), GenomicFeatures, RUnit, KEGG.db
Biostrings, BSgenome (>= 1.16.1), BSgenome.Hsapiens.UCSC.hg18
Biostrings, BSgenome (>= 1.16.1), BSgenome.Hsapiens.UCSC.hg19
genomewidesnp6Crlmm, hapmapsnp6, RColorBrewer, genefilter,
RSQLite, foreach, RUnit, pd.mapping50k.hind240, SNPchip (>=
2.0.3)
RUnit, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20110815, SIFT.Hsapiens.dbSNP132,
PolyPhen.Hsapiens.dbSNP131
siggenes, genefilter, MASS, RColorBrewer, GeneMeta
tkWidgets (>= 1.19.0), affydata, widgetTools
plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db,
hgu133acdf, Rgraphviz, RColorBrewer
Biobase, hgu95av2.db, genefilter, Biostrings (>= 2.4.4),
rae230a.db, rae230aprobe, tkWidgets, XML (>= 0.92-2), GO.db,
org.Hs.eg.db, org.Mm.eg.db, hom.Hs.inp.db, humanCHRLOC,
Rgraphviz
MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata,
hgu133atagcdf
aCGH, affy, limma, snapCGH, beadarray, DNAcopy
lumi, vsn, affy, hwriter, beadarrayExampleData,
illuminaHumanv3.db
methods, GSEABase, hwriter, colorspace, graph, GO.db,
KEGG.db, estrogen, org.Hs.eg.db, hgu95av2.db, limma, affy,
genefilter
hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.4), GGdata, snpStats,
ellipse, RUnit
limma, convert, GEOquery, dyebiasexamples, methods
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.17), GenomicFeatures
(>= 1.8.2), RnaSeqTutorial (>= 0.0.8)
igraph0 (>= 0.5.5), Matrix, GOstats, GO.db, KEGG.db, biclust,
MASS, xtable, ALL, hgu95av2.db, targetscan.Hs.eg.db,
org.Hs.eg.db
Biobase (>= 1.13.16), affy, vsn, hgu95av2.db, genefilter
RPostgreSQL, zoo, maps, mapdata, plotrix
oligo, frma, affyPLM, hgu133aprobe, hgu133atagprobe,
hgu133plus2probe, hgu133acdf, hgu133atagcdf, hgu133plus2cdf,
hgu133afrmavecs, frmaExampleData
gageData, GO.db, GSEABase, KEGG.db, org.Hs.eg.db
affydata, tools, splines, hgu95av2cdf, hgu95av2probe
Biobase (>= 1.99.10), class, hgu95av2.db, methods, tkWidgets,
ALL, ROC
GeneMeta, breastCancerVDX, breastCancerMAINZ,
breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT,
breastCancerNKI, rmeta, Biobase, xtable
Biobase (>= 2.5.5), Rgraphviz, annotate, fibroEset,
hgu95av2.db, hu6800.db, hgu133a.db
vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db,
lungExpression, org.Hs.eg.db, annotate, Biobase (>= 2.5.5),
survival, GSEABase, penalized, gss, MASS, boot, rpart
GenomicFeatures, rtracklayer, org.Hs.eg.db, chopsticks,
SNPlocs.Hsapiens.dbSNP.20090506, lumiHumanIDMapping, GGBase,
GGtools, hmyriB36
MSnbase, OrgMassSpecR, XML, biomaRt, ggplot2
affy, MASS, org.Hs.eg.db, splines, statmod (>= 1.2.2), vsn
beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db,
lumiHumanIDMapping, genefilter, RColorBrewer
annaffy (>= 1.6.2), biomaRt (>= 1.8.2), geneplotter
amap, annotate, class, e1071, MASS, multtest, OLIN, R2HTML,
rgl, som
lumi, lattice, limma, xtable, IlluminaHumanMethylation27k.db
(>= 1.4.4), IlluminaHumanMethylation450k.db, SQN, MASS,
matrixStats, parallel
IlluminaHumanMethylation450kmanifest (>= 0.2.0), minfiData
(>= 0.2.0), Biostrings
RSQLite, hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
pd.genomewidesnp.5, pd.mapping50k.hind240,
pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
genomewidesnp6Crlmm, genomewidesnp5Crlmm, VanillaICE, RUnit
pd.hg.u95av2, pd.huex.1.0.st.v2, pd.mapping50k.xba240,
pd.hg18.60mer.expr, pd.2006.07.18.hg18.refseq.promoter,
pd.hugene.1.0.st.v1
hapmap100kxba, pd.mapping50k.xba240, pd.huex.1.0.st.v2,
pd.hg18.60mer.expr, pd.hugene.1.0.st.v1, maqcExpression4plex,
genefilter, limma, RColorBrewer, oligoData, RUnit
annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno,
chipseq, BSgenome, Rgraphviz, affy ,annaffy, affyPLM, multtest,
ssize, sizepower, RankProd, org.Hs.eg.db, org.Mm.eg.db,
org.Rn.eg.db, edgeR, metaArray, MergeMaid, biomaRt,
GenomeGraphs,AffyCompatible, rtracklayer, Genominator, EDASeq,
limma, DESeq, goseq, cummeRbund,
hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db,
ragene10sttranscriptcluster.db, GOstats, AnnotationDbi,
preprocessCore, baySeq, HuExExonProbesetLocation,
MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR,
RmiR.Hs.miRNA, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn4,
R.utils
Rgraphviz, GO.db, hgu133plus2.db, mouse4302.db, rat2302.db,
hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db,
Biostrings, pcaGoPromoter.Hs.hg19, pcaGoPromoter.Mm.mm9,
pcaGoPromoter.Rn.rn4, serumStimulation, parallel
pumadata, affydata, snow, limma, annotate, ROCR
Matrix, mvtnorm, graph, genefilter, Category,
org.EcK12.eg.db, GOstats
humanStemCell, microRNA (>= 1.1.1), genefilter, limma,
org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, hgu133plus2.db
GO.db, GOstats, Rgraphviz, multtest, hu6800.db, survival
affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5)
ALL, hgu95av2.db, hgu133a.db, genefilter, xtable, multtest,
Rgraphviz, globaltest
affydata, plier, limma, lumi, org.Hs.eg.db
faahKO, msdata, ncdf, multtest, rgl, MassSpecWavelet (>=
1.5.2), RANN, snow, RUnit
MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db,
org.Sc.sgd.db, org.At.tair.db, KEGG.db, RUnit,
TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db, org.Hs.eg.db,
seqnames.db, reactome.db, AnnotationForge
DBI (>= 0.2-4), RSQLite (>= 0.6-4), XML, RCurl, hgu95av2.db,
human.db0, affy, Homo.sapiens, hom.Hs.inp.db, GO.db
Biobase, IRanges, GenomicRanges, AnnotationDbi, oligoClasses,
oligo, affyPLM, RUnit
BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=
1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe,
hgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy,
affydata (>= 1.11.5), RUnit
EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6),
hgu95av2.db, Matrix, KEGG.db, GO.db, SNPchip (>= 2.3.11),
geneplotter, limma, lattice, graph, Biobase, genefilter,
methods, RUnit, org.Sc.sgd.db, GOstats
mouse4302frmavecs, mouse4302.db, mouse4302cdf, RUnit,
BiocGenerics
lattice, parallel, MASS, RColorBrewer, xtable
hgu95av2.db (>= 1.13.0), ALL, GO.db (>= 1.13.0), annotate,
multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM,
GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics
limma, RColorBrewer, genefilter, mclust, edgeR, GSVAdata
GWASdata, RUnit, SNPRelate, snpStats, VariantAnnotation
RUnit, BiocGenerics, Rgraphviz, XML, RCytoscape
rtracklayer, biomaRt, org.Mm.eg.db, Biostrings, BSgenome,
BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.14),
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce2, BSgenome.Dmelanogaster.UCSC.dm3 (>=
1.3.17), mirbase.db, FDb.UCSC.tRNAs,
TxDb.Hsapiens.UCSC.hg18.knownGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1), Rsamtools,
pasillaBamSubset (>= 0.0.5), RUnit
Biostrings (>= 2.25.3), Rsamtools (>= 1.9.21), BSgenome,
rtracklayer, GenomicFeatures, VariantAnnotation, edgeR, DESeq,
DEXSeq, EatonEtAlChIPseq (>= 0.0.3), leeBamViews, pasilla,
pasillaBamSubset, org.Sc.sgd.db,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
BSgenome.Scerevisiae.UCSC.sacCer2,
BSgenome.Dmelanogaster.UCSC.dm3, RUnit, digest
seqinr (>= 3.0.3), biomaRt (>= 2.6.0), GenomicFeatures (>=
1.8.1), Biostrings (>= 2.24.1), BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm9, miRNATarget, humanStemCell,
IRanges , GenomicRanges (>= 1.8.3), BSgenome,
beadarrayExampleData
BSgenome.Dmelanogaster.UCSC.dm3,
PWMEnrich.Dmelanogaster.background, testthat, gtools, parallel
ShortRead (>= 1.13.19), GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, KEGG.db, RUnit
genomewidesnp6Crlmm, hapmapsnp6, RColorBrewer, genefilter,
RSQLite, foreach, RUnit, pd.mapping50k.hind240, SNPchip (>=
2.2.0)
RUnit, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20110815, SIFT.Hsapiens.dbSNP132,
PolyPhen.Hsapiens.dbSNP131, snpStats
siggenes, genefilter, MASS, RColorBrewer, GeneMeta, RUnit
Biobase, hgu95av2.db, genefilter, Biostrings (>= 2.25.10),
rae230a.db, rae230aprobe, tkWidgets, GO.db, org.Hs.eg.db, XML
(>= 0.92-2), org.Mm.eg.db, hom.Hs.inp.db, humanCHRLOC,
Rgraphviz, RUnit,
lumi, vsn, affy, hwriter, beadarrayExampleData,
illuminaHumanv3.db, gridExtra
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.17), GenomicFeatures
(>= 1.10.0), RnaSeqTutorial (>= 0.0.10)
ecoliLeucine, ecolicdf, graph, multtest, affy
MASS, statmod, splines, locfit, KernSmooth
oligo, pd.huex.1.0.st.v2, pd.hugene.1.0.st.v1, frma, affyPLM,
hgu133aprobe, hgu133atagprobe, hgu133plus2probe, hgu133acdf,
hgu133atagcdf, hgu133plus2cdf, hgu133afrmavecs, frmaExampleData
KEGG.db, reactome.db, RUnit, BiocGenerics, reshape
BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, affyPLM, chipseq,
TxDb.Mmusculus.UCSC.mm9.knownGene, knitr
RUnit, BSgenome.Dmelanogaster.UCSC.dm3,
BSgenome.Scerevisiae.UCSC.sacCer3, VariantAnnotation,
org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
BSgenome.Hsapiens.UCSC.hg19, LungCancerLines
DEGraph (>= 1.4), hgu133plus2.db, RCytoscape (>= 1.6), SPIA
(>= 2.2), topologyGSA (>= 1.0)
Rsamtools, rtracklayer, GenomicFeatures, org.Hs.eg.db,
SNPlocs.Hsapiens.dbSNP.20090506,
TxDb.Hsapiens.UCSC.hg18.knownGene, lumiHumanIDMapping, GGBase,
GGtools, hmyriB36
MSnbase, OrgMassSpecR, XML, biomaRt, ggplot2, Hmisc, RJSONIO
IlluminaHumanMethylation450kmanifest (>= 0.2.0), minfiData
(>= 0.2.0), RUnit
RSQLite, hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
pd.genomewidesnp.5, pd.mapping50k.hind240,
pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
genomewidesnp6Crlmm, genomewidesnp5Crlmm, crlmm, SNPchip,
VanillaICE, RUnit, human370v1cCrlmm
annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno,
chipseq, BSgenome, Rgraphviz, affy ,annaffy, affyPLM, multtest,
ssize, sizepower, RankProd, org.Hs.eg.db, org.Mm.eg.db,
org.Rn.eg.db, edgeR, metaArray, MergeMaid, biomaRt,
GenomeGraphs,AffyCompatible, rtracklayer, Genominator, EDASeq,
limma, DESeq, goseq, hugene10sttranscriptcluster.db,
mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db,
GOstats, AnnotationDbi, preprocessCore, baySeq,
HuExExonProbesetLocation, MoExExonProbesetLocation,
RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9,
BSgenome.Rnorvegicus.UCSC.rn4, R.utils, cummeRbund
Hmisc, CPE, clinfun, survJamda, Biobase, xtable
BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData,
pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart12
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db,
org.Sc.sgd.db, org.At.tair.db, KEGG.db, RUnit,
TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db, org.Hs.eg.db,
seqnames.db, reactome.db, AnnotationForge, graph
tools, tkWidgets, ALL, RUnit, golubEsets
minet, catnet, igraph, Rgraphviz, RUnit, BiocGenerics
parathyroidSE, pasilla (>= 0.2.10), vsn, gplots
GenomicFeatures, pasilla (>= 0.2.13), parathyroidSE
RUnit, BiocGenerics, knitr, golubEsets (>= 1.0)
hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools
GWASdata, BiocGenerics, RUnit, SNPRelate, snpStats,
VariantAnnotation
GO.db, KEGG.db, reactome.db, biomaRt, AnnotationDbi,
org.Hs.eg.db, org.Rn.eg.db, org.Mm.eg.db, org.Dm.eg.db, graph
AnnotationDbi (>= 1.21.1), Biostrings (>= 2.25.3), Rsamtools
(>= 1.11.24), BSgenome, rtracklayer, GenomicFeatures,
VariantAnnotation, edgeR, DESeq, DEXSeq, EatonEtAlChIPseq (>=
0.0.3), leeBamViews, pasilla, pasillaBamSubset, org.Sc.sgd.db,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, seqnames.db,
BSgenome.Scerevisiae.UCSC.sacCer2,
BSgenome.Dmelanogaster.UCSC.dm3, RUnit, digest
xtable, GenomicFeatures, BSgenome.Hsapiens.UCSC.hg19,
biomaRt, rtracklayer
biomaRt, GOstats, cluster, hgu133a.db, mclust, igraph,
breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP,
breastCancerVDX
human610quadv1bCrlmm (>= 1.0.3), SNPchip, RUnit
MotifDb, BSgenome.Dmelanogaster.UCSC.dm3,
PWMEnrich.Dmelanogaster.background, testthat, gtools, parallel
RUnit, hgu95av2.db, knitr, formatR, Rserve
GenomicRanges, IRanges, BSgenome, gplots, grid, MASS,
gsmoothr, edgeR, DNAcopy, Ringo, aroma.affymetrix, ShortRead,
BSgenome.Hsapiens.UCSC.hg18, rtracklayer
RUnit, ggplot2, ggbio, ALL, hgu95av2.db, org.Mm.eg.db, knitr
mzR, MSnbase, xcms, msdata, isobar, MALDIquant,
MALDIquantForeign, readBrukerFlexData, rTANDEM, synapter,
synapterdata, IPPD, Rdisop, OrgMassSpecR, BRAIN, rols, hpar,
GO.db, org.Hs.eg.db, biomaRt, RColorBrewer, ggplot2, reshape2,
knitr, biocViews, xtable
ShortRead (>= 1.13.19), GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, KEGG.db, pasillaBamSubset,
RUnit, TxDb.Hsapiens.UCSC.hg18.knownGene
igraph, Gviz, Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene,
RNAseqData.HNRNPC.bam.chr14, RUnit
genomewidesnp6Crlmm (>= 1.0.7), hapmapsnp6, RColorBrewer,
genefilter, RSQLite, foreach, RUnit, pd.mapping50k.hind240,
SNPchip (>= 2.5.7), doSNOW
RUnit, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20110815,
SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132,
PolyPhen.Hsapiens.dbSNP131, snpStats, ggplot2
cluster, parallel, GenomicFeatures, dynamicTreeCut,
Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene
limma, RUnit, BiocGenerics, doParallel, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
RUnit, BiocGenerics, RCytoscape (>= 1.6.3), graphite, ALL,
hgu95av2.db
hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.7), GGdata, snpStats,
ellipse, RUnit
survival, RUnit, metafor, genefilter, futile.logger, sva,
xtable
parallel, statmod, stats, DESeq, RColorBrewer
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.17), GenomicFeatures
(>= 1.11.0), RnaSeqTutorial (>= 0.0.11)
igraph (>= 0.6), Matrix, GOstats, GO.db, KEGG.db, biclust,
MASS, xtable, ALL, hgu95av2.db, targetscan.Hs.eg.db,
org.Hs.eg.db
org.Hs.eg.db, org.Mm.eg.db, ArrayExpress, affy, hgfocus.db,
ArrayExpress, hgu133a.db, mgug4104a.db, RUnit
DESeq, KEGG.db, reactome.db, RUnit, GO.db, mgsa
pathview, gageData, GO.db, KEGG.db, org.Hs.eg.db, hgu133a.db,
GSEABase
Biobase (>= 1.99.10), class, hgu95av2.db, methods, tkWidgets,
ALL, ROC, DESeq, pasilla
vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db,
lungExpression, org.Hs.eg.db, annotate, Biobase, survival,
GSEABase, penalized, gss, MASS, boot, rpart
DEGraph (>= 1.4), hgu133plus2.db, RCytoscape (>= 1.6), SPIA
(>= 2.2), topologyGSA (>= 1.0), clipper, ALL
MSnbase, OrgMassSpecR, XML, biomaRt, ggplot2, RJSONIO, Hmisc,
gplots, RColorBrewer, gridExtra, limma, boot, distr
affy, MASS, org.Hs.eg.db, splines, statmod (>= 1.2.2), vsn,
ellipse
lumi, lattice, limma, xtable, IlluminaHumanMethylation27k.db
(>= 1.4.4), IlluminaHumanMethylation450k.db, SQN,
GenomicRanges, MASS, matrixStats, parallel, rtracklayer,
Biostrings, FDb.InfiniumMethylation.hg19
IlluminaHumanMethylation450kmanifest (>= 0.2.0), minfiData
(>= 0.2.0), RUnit, digest
RSQLite, hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
pd.genomewidesnp.5, pd.mapping50k.hind240,
pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6),
crlmm, SNPchip, VanillaICE, RUnit, human370v1cCrlmm
annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno,
chipseq, BSgenome, Rgraphviz, affy ,annaffy, affyPLM, multtest,
ssize, sizepower, RankProd, org.Hs.eg.db, org.Mm.eg.db,
org.Rn.eg.db, edgeR, metaArray, MergeMaid, biomaRt,
GenomeGraphs,AffyCompatible, rtracklayer, Genominator, EDASeq,
limma, DESeq, DEXSeq, goseq, hugene10sttranscriptcluster.db,
mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db,
GOstats, AnnotationDbi, preprocessCore, baySeq,
HuExExonProbesetLocation, MoExExonProbesetLocation,
RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9,
BSgenome.Rnorvegicus.UCSC.rn4, R.utils, cummeRbund
yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM,
gtools, biomaRt
Rgraphviz, RCurl, graph, RUnit, BiocGenerics
GO.db, KEGG.db, PFAM.db, hgu133a.db, breastCancerUPP,
survival, foreach, doRNG, Rgraphviz, GOstats
rgl (>= 0.93.932), BSgenome.Celegans.UCSC.ce10, rtracklayer,
GenomeGraphs
faahKO, msdata, ncdf, multtest, rgl, MassSpecWavelet (>=
1.5.2), RANN, RUnit
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db,
org.Sc.sgd.db, org.At.tair.db, KEGG.db, RUnit,
TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db, org.Hs.eg.db,
seqnames.db, reactome.db, AnnotationForge, graph,
org.TguttataTestingSubset.eg.db
DBI (>= 0.2-4), RSQLite (>= 0.6-4), XML, RCurl, hgu95av2.db,
human.db0, affy, Homo.sapiens, hom.Hs.inp.db, GO.db, BiocStyle,
knitr
RColorBrewer, crlmm, ff,
BSgenome.Hsapiens.UCSC.hg18,BSgenome.Hsapiens.UCSC.hg19,
lattice, latticeExtra, RUnit, BiocGenerics
Biobase, IRanges, GenomicRanges, AnnotationDbi, oligoClasses,
oligo, affyPLM, flowClust, affy, RUnit, DESeq2
MASS, class, nnet, glmnet, e1071, randomForest, plsgenomics,
gbm, mgcv, corpcor, limma, st, mvtnorm
EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6),
hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice,
graph, Biobase, genefilter, methods, RUnit, org.Sc.sgd.db,
GOstats
RSQLite, scatterplot3d, gplots, fmcsR,snow, RPostgreSQL,
BiocStyle
RUnit, Biobase, parathyroidSE, pasilla (>= 0.2.10), vsn,
gplots, BiocStyle
GenomicFeatures (>= 1.13.29), pasilla (>= 0.2.13),
parathyroidSE, BiocStyle
rtracklayer, biomaRt, org.Mm.eg.db, Biostrings, BSgenome,
BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.14),
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce2, BSgenome.Dmelanogaster.UCSC.dm3 (>=
1.3.17), mirbase.db, FDb.UCSC.tRNAs,
TxDb.Hsapiens.UCSC.hg18.knownGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1), Rsamtools,
pasillaBamSubset (>= 0.0.5), seqnames.db, RUnit
AnnotationDbi (>= 1.21.1), AnnotationHub, BSgenome,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Scerevisiae.UCSC.sacCer2,
BSgenome.Dmelanogaster.UCSC.dm3, Biostrings (>= 2.25.3),
Rsamtools (>= 1.13.53), rtracklayer, KEGG.db, KEGGgraph,
GenomicFeatures, TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg19.knownGene, seqnames.db, org.Sc.sgd.db,
VariantAnnotation, edgeR, DESeq, DEXSeq, pasilla,
pasillaBamSubset, RUnit, digest, BiocStyle
testthat, zoo, knitr (>= 1.1.0), rols, Rdisop, pRolocdata,
msdata
Rsamtools, rtracklayer, Gviz, RUnit, BiocStyle
gplots,RMassBankData, xcms (>= 1.37.1), CAMERA, ontoCAT,
RUnit
ShortRead (>= 1.19.10), GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, KEGG.db,
TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,
BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, RUnit, BiocStyle
parallel, snow, BiocGenerics, RUnit, Rcpp
org.Hs.eg.db, prebsdata, Rsamtools,
TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
testthat, ggbio, ggplot2, BiocStyle, knitr
RUnit, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20110815,
SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132,
PolyPhen.Hsapiens.dbSNP131, snpStats, ggplot2, BiocStyle
RUnit, BiocGenerics, doParallel, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
methods, GO.db, KEGG.db, estrogen, org.Hs.eg.db, hgu95av2.db,
limma, affy, genefilter
testthat, knitr, BiocStyle (>= 0.0.14), BRAIN, UniProt.ws (>=
2.1.4)
BiocGenerics, edgeR, knitr, pvclust, RUnit, vegan
hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.7), GGdata, snpStats,
ellipse, RUnit, VGAM
BiocStyle, survival, xtable, sva, genefilter, logging
BSgenome (>= 1.30.0), BSgenome.Dmelanogaster.UCSC.dm3 (>=
1.3.19), GenomicFeatures (>= 1.14.0), RnaSeqTutorial (>=
0.0.13), BiocStyle (>= 1.0.0)
testthat, roxygen2, knitr, antiProfilesData, hgu133plus2.db
pathview, gageData, GO.db, org.Hs.eg.db, hgu133a.db,
GSEABase, Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene, DESeq,
DESeq2, edgeR, limma
Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db
RUnit, DNAcopy, stats, BSgenome, Biostrings
vsn, RUnit, testthat, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, affyPLM, chipseq,
TxDb.Mmusculus.UCSC.mm9.knownGene, knitr
knitr, locfit, deepSNV, BSgenome.Hsapiens.UCSC.hg19, h5vcData
statmod (>= 1.2.2), splines, locfit, MASS, ellipse, affy,
vsn, AnnotationDbi, org.Hs.eg.db
lumi, lattice, limma, xtable, IlluminaHumanMethylation27k.db
(>= 1.4.4), IlluminaHumanMethylation450k.db, SQN,
GenomicRanges, MASS, matrixStats, parallel, rtracklayer,
Biostrings, methyAnalysis, FDb.InfiniumMethylation.hg19
IlluminaHumanMethylation450kmanifest (>= 0.2.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19, minfiData (>=
0.4.1), quadprog, FlowSorted.Blood.450k (>= 1.0.1), RUnit,
digest
RUnit, BiocGenerics, MotifDb, RColorBrewer, BiocStyle
AnnotationDbi, org.Hs.eg.db, KEGG.db, GO.db, reactome.db,
RUnit, GOstats,hwriter
flowWorkspaceData, knitr, testthat, utils, tools
testthat, pRolocdata, roxygen2, synapter, xtable
Rsamtools, GEOquery, SRAdb, GenomicFeatures, BiocStyle
yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM,
gtools, biomaRt, snowfall
affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX,
RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf
RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt,
knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8, org.Mm.eg.db
GO.db, KEGG.db, PFAM.db, reactome.db, hgu133a.db,
breastCancerUPP, survival, foreach, doRNG, Rgraphviz, GOstats
survival, haplo.stats, mcbiopi, siggenes, splines, LogicReg
(>= 1.5.3), logicFS (>= 1.28.1), KernSmooth
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db,
org.Sc.sgd.db, org.At.tair.db, KEGG.db, RUnit,
TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db, org.Hs.eg.db,
seqnames.db, reactome.db, AnnotationForge, graph,
org.TguttataTestingSubset.eg.db, BiocStyle, knitr
BiocInstaller, BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.11),
BSgenome.Hsapiens.UCSC.hg19.masked,
SNPlocs.Hsapiens.dbSNP.20100427, hgu95av2probe, Biobase,
GenomeInfoDb, RUnit
RUnit, BiocGenerics, Biobase, RJSONIO, knitrBootstrap
doParallel, snow, Rmpi, RUnit, BiocStyle, knitr
BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=
1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe,
hgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy
(>= 1.41.3), affydata (>= 1.11.5), RUnit
flowWorkspace (>= 3.9.66), shiny, testthat, devtools, Kmisc
BiocStyle, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg18.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Mmusculus.UCSC.mm9.knownGene,
TxDb.Rnorvegicus.UCSC.rn4.ensGene,
TxDb.Celegans.UCSC.ce6.ensGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene
reactome.db, BSgenome.Ecoli.NCBI.20080805, org.Hs.eg.db,
gplots, RUnit
clusterProfiler, ReactomePA, DOSE, GOSemSim, org.Hs.eg.db,
knitr
RSQLite, scatterplot3d, gplots, fmcsR,snow, RPostgreSQL,
BiocStyle,knitr,knitcitations, ChemmineOB
RUnit, gplots, knitr, Biobase, BiocStyle, parathyroidSE,
pasilla (>= 0.2.10), DESeq, vsn, GenomicAlignments,
GenomicFeatures, Rsamtools, biomaRt
GenomicFeatures (>= 1.13.29), pasilla (>= 0.2.22),
parathyroidSE, BiocStyle, knitr
knitr, RUnit, BiocGenerics,
IlluminaHumanMethylation450kanno.ilmn12.hg19, GenomicRanges
DESeq, GEOquery, limma, simpleaffy, affyPLM, RColorBrewer
RUnit, BiocGenerics, Rgraphviz, XML, RCytoscape, RBGL
BiocGenerics, IRanges, BSgenome,
BSgenome.Scerevisiae.UCSC.sacCer2,
BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, RUnit, BiocStyle, knitr
rtracklayer, GenomicFeatures, RNAseqData.HNRNPC.bam.chr14,
pasillaBamSubset, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
BSgenome.Dmelanogaster.UCSC.dm3, BSgenome.Hsapiens.UCSC.hg19,
DESeq, edgeR, RUnit, BiocStyle
org.Mm.eg.db, BSgenome, BSgenome.Hsapiens.UCSC.hg18 (>=
1.3.14), BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce2, BSgenome.Dmelanogaster.UCSC.dm3 (>=
1.3.17), mirbase.db, FDb.UCSC.tRNAs,
TxDb.Hsapiens.UCSC.hg18.knownGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1), Rsamtools,
pasillaBamSubset (>= 0.0.5), seqnames.db, RUnit, BiocStyle,
knitr
genefilter, deepSNV, BiocStyle, IRanges, RUnit,
RNAseqData.HNRNPC.bam.chr14, TxDb.Hsapiens.UCSC.hg19.knownGene
AnnotationDbi (>= 1.21.1), AnnotationHub, BSgenome,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Scerevisiae.UCSC.sacCer2,
Biostrings (>= 2.25.3), Rsamtools (>= 1.13.53),
GenomicAlignments, rtracklayer, KEGG.db, KEGGgraph,
GenomicFeatures, TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Athaliana.BioMart.plantsmart21, seqnames.db,
org.Sc.sgd.db, VariantAnnotation, edgeR, DESeq, DEXSeq,
pasilla, pasillaBamSubset, RUnit, digest, BiocStyle
knitr, e1071, kernlab, earth, ellipse, fastICA, gam, ipred,
klaR, MASS, mda, mgcv, mlbench, nnet, party, pls, pROC, proxy,
RANN, spls, affy
testthat, zoo, knitr (>= 1.1.0), rols, Rdisop, pRolocdata (>=
1.0.7), msdata
seqinr (>= 3.0.7), biomaRt (>= 2.19.1), GenomicFeatures (>=
1.15.4), Biostrings (>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell,
IRanges, GenomicRanges (>= 1.8.3), BSgenome,
beadarrayExampleData
rBiopaxParser (>= 2.1), RCurl, RCytoscape
R.cache (>= 0.9.0), digest, snowfall, BSgenome, GenomeInfoDb,
GenomicRanges
h5vcData, testthat, knitr, BiocStyle, biovizBase, optparse
limma, biomaRt, RUnit, BiocGenerics, BiocStyle
RUnit, ALL, hgu95av2.db, org.Mm.eg.db, shiny, pasilla,
mzR, MSnbase, xcms, msdata, isobar, MALDIquant,
MALDIquantForeign, readBrukerFlexData, rTANDEM, synapter,
synapterdata, IPPD, Rdisop, OrgMassSpecR, BRAIN, rols, hpar,
GO.db, org.Hs.eg.db, biomaRt, RColorBrewer, ggplot2, reshape2,
knitr, xtable
Rsamtools, ShortRead, BSgenome.Dmelanogaster.UCSC.dm3,
GenomicAlignments, biomaRt, genomeIntervals
GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, KEGG.db,
TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,
BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, RUnit, BiocStyle
BiocStyle, RUnit, biomaRt, GenomicFeatures, yeastNagalakshmi
testthat, knitr, BiocStyle, parallel,
BSgenome.Hsapiens.UCSC.hg19, SomaticCancerAlterations, h5vc,
h5vcData, fastICA
RUnit, Rsamtools (>= 1.5.53), GenomicAlignments, Rgraphviz
BiocStyle, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20120608,
MafDb.ALL.wgs.phase1.release.v3.20101123,
MafDb.ESP6500SI.V2.SSA137.dbSNP138, phastCons100way.UCSC.hg19,
PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP137
RUnit, LungCancerLines (>= 0.0.6), RBGL, graph
affydata, hgfocuscdf, rgl, BiocStyle, knitr
lumi, vsn, affy, hwriter, beadarrayExampleData,
illuminaHumanv3.db, gridExtra, BiocStyle,
TxDb.Hsapiens.UCSC.hg19.knownGene, ggbio, Nozzle.R1, knitr
testthat (>= 0.8), knitr, BiocStyle (>= 0.0.14), BRAIN,
UniProt.ws (>= 2.1.4)
RUnit, BiocGenerics, RCytoscape (>= 1.6.3), graphite, ALL,
hgu95av2.db, MASS, BiocStyle
BiocStyle, EBSeq, DESeq, DESeq2 (>= 1.1.31), baySeq (>=
1.16.0), genefilter, NOISeq, DSS, TCC, samr, NBPSeq, HTSDiff
hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.7), GGdata, snpStats,
RUnit
XML, UniProt.ws, RUnit, BiocGenerics, BiocStyle
BiocStyle (>= 1.2.0), BSgenome (>= 1.32.0),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.1000), GenomicFeatures
(>= 1.16.2), RnaSeqTutorial (>= 0.2.0), RUnit (>= 0.4.26)
testthat, roxygen2, knitr, antiProfilesData, hgu133plus2.db,
knitrBootstrap
pathview, gageData, GO.db, org.Hs.eg.db, hgu133a.db,
GSEABase, Rsamtools, GenomicAlignments,
TxDb.Hsapiens.UCSC.hg19.knownGene, DESeq, DESeq2, edgeR, limma
vsn, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, chipseq,
TxDb.Mmusculus.UCSC.mm9.knownGene, knitr, BiocStyle,
Homo.sapiens
RUnit, BSgenome.Dmelanogaster.UCSC.dm3,
BSgenome.Scerevisiae.UCSC.sacCer3, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
LungCancerLines
BiocStyle, DEGraph (>= 1.4), hgu133plus2.db, RCytoscape (>=
1.6), SPIA (>= 2.2), topologyGSA (>= 1.4.0), clipper, ALL
RUnit, BiocGenerics, IlluminaDataTestFiles (>= 1.0.2),
BiocStyle
RUnit, hgu95av2.db, knitr,GenomicRanges, GOstats, ggbio,
GO.db, Gviz, rtracklayer
MSnbase, OrgMassSpecR, XML, biomaRt, ggplot2, RJSONIO, Hmisc,
gplots, RColorBrewer, gridExtra, limma, boot, distr, Rgbp, DBI,
MASS
statmod (>= 1.2.2), splines, locfit, MASS, ellipse, affy,
vsn, AnnotationDbi, org.Hs.eg.db, illuminaio
knitr (>= 1.5), antiProfilesData (>= 0.99.2), Biobase (>=
2.22.0), BiocStyle
BiocGenerics, GenomicRanges, rtracklayer, Rsamtools, MADAM,
survcomp, VennDiagram, knitr, zoo, RUnit
lumi, lattice, limma, xtable, IlluminaHumanMethylation27k.db
(>= 1.4.4), IlluminaHumanMethylation450k.db, SQN,
GenomicRanges, MASS, matrixStats, parallel, rtracklayer,
Biostrings, methyAnalysis, FDb.InfiniumMethylation.hg19,
TCGAMethylation450k, TxDb.Hsapiens.UCSC.hg19.knownGene,
IlluminaHumanMethylation450kanno.ilmn12.hg19, Homo.sapiens,
knitr
BiocStyle (>= 1.0.0), RUnit, BiocGenerics (>= 0.8.0)
ALL, genefilter, limma, hgu95av2.db, ReportingTools,
BiocStyle
Rsamtools, GenomicAlignments, GEOquery, SRAdb,
GenomicFeatures, BiocStyle
pumadata, affydata, snow, limma, ROCR,annotate
Rgraphviz, RCurl, graph, RUnit, BiocGenerics, nem, RBGL
RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt,
knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked,
org.Hs.eg.db, org.Mm.eg.db, ggplot2
xtable, GO.db, knitr (>= 1.1.0), BiocStyle
MSnbase, Biostrings, BiocStyle, BiocGenerics, RUnit, knitr
biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit,
BiocGenerics, BiocStyle
survival, haplo.stats, mcbiopi, siggenes, splines, LogicReg
(>= 1.5.3), logicFS (>= 1.28.1), KernSmooth, VariantAnnotation
hgu95av2.db, hgu95av2, GO.db, GO, human.db0, mouse.db0, rat.db0, fly.db0, yeast.db0, arabidopsis.db0
BSgenome.Celegans.UCSC.ce2 (>= 1.3.4),
BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.7),
hgu95av2probe
BSgenome (>= 1.7.7),
BSgenome.Celegans.UCSC.ce2 (>= 1.3.4),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.7),
drosophila2probe, hgu95av2probe,
RUnit
hgu95av2.db (>= 1.13.0), ALL, multtest, genefilter,
RColorBrewer, Rgraphviz, xtable, SparseM
Category, multtest, ALL, annotate, hgu95av2.db,
genefilter, GOstats, RColorBrewer
Biobase, GO, multtest, golubEsets, hu6800.db, vsn
class, cluster, e1071, ipred, randomForest, gpls, pamr, rpart,
MASS, nnet, ALL, gbm, mlbench, hgu95av2.db, som,
RColorBrewer, hu6800.db,
golubEsets, sma, ada, keggorth, kernlab
RSQLite,
geneplotter,
stats,
graphics,
VanillaICE,
RColorBrewer
MergeMaid,
siggenes,
gtools,
MASS,
multtest,
genefilter,
geneplotter,
RColorBrewer,
GeneMeta
tkWidgets (>= 1.18.0), affydata, geneplotter
plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz
hgu95av2.db, genefilter, Biostrings (>= 2.4.4), rae230a.db,
rae230aprobe, tkWidgets, XML (>= 0.92-2), hsahomology,
xlahomology, GO.db, org.Hs.eg.db
hgu95av2.db, hu6800.db, hgu133a.db, fibroEset, Rgraphviz, annotate
vsn, golubEsets, KEGG.db, hu6800.db, GOstats, Rgraphviz, GO.db
Biobase (>= 1.12.0), annotate, beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db, genefilter, geneplotter, RColorBrewer
annotate, GOstats, genefilter, maSigPro, pamr, pdmclass,
Rgraphviz, affy ,annaffy, affyPLM, multtest, ssize, sizepower,
siggenes, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
metaArray, biomaRt, GenomeGraphs, AffyCompatible, Biostrings
GOstats, Rgraphviz, multtest, hu6800, survival
ALL, hgu95av2.db, genefilter, xtable, multtest, Rgraphviz, hgu133a.db
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db, human.db0, mouse.db0, rat.db0, fly.db0, yeast.db0, arabidopsis.db0, zebrafish.db0, ecoliK12.db0, ecoliSakai.db0
simpleaffy, R2HTML, affydata, affyPLM, genefilter, annaffy, gcrma, hugene10st.db
BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.11),
SNPlocs.Hsapiens.dbSNP.20071016,
hgu95av2probe,
Biobase
BSgenome,
BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
drosophila2probe, hgu95av2probe,
RUnit
MASS, class, nnet, glmpath, e1071, randomForest, plsgenomics, gbm, mgcv, corpcor, limma
EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6),
hgu95av2.db, Matrix, KEGG.db, GO.db, SNPchip, geneplotter,
limma, lattice
illuminaHumanv1.db, org.Hs.eg.db,
SNPlocs.Hsapiens.dbSNP.20071016, mapLD, haplo.stats
Biobase, GO.db, multtest, golubEsets, hu6800.db, vsn
class, e1071, ipred, randomForest, gpls, pamr, rpart,
MASS, nnet, ALL, gbm, mlbench, hgu95av2.db, som,
RColorBrewer, hu6800.db,
golubEsets, sma, ada, keggorth, kernlab
GO.db, GSEABase, KEGG.db, GEOquery, org.Hs.eg.db, hgu95av2.db
tkWidgets (>= 1.19.0), geneplotter, affydata
plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer
hgu95av2.db, genefilter, Biostrings (>= 2.4.4), rae230a.db,
rae230aprobe, tkWidgets, XML (>= 0.92-2), GO.db, org.Hs.eg.db,
org.Mm.eg.db, hom.Hs.inp.db
MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata
affy, marray, MASS, org.Hs.eg.db, splines, sma, statmod (>= 1.2.2), vsn
beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db, lumiHumanIDMapping, genefilter, geneplotter, RColorBrewer
annotate, genefilter, maSigPro, pamr, pdmclass,
Rgraphviz, affy ,annaffy, affyPLM, multtest, ssize, sizepower,
siggenes, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
metaArray, biomaRt, GenomeGraphs, AffyCompatible, Biostrings
humanStemCell, microRNA, genefilter, limma, org.Hs.eg.db
faahKO, msdata, multtest, ncdf, rgl, MassSpecWavelet (>= 1.5.2), Rgraphviz
vsn, affycoretools, hgug4112a.db, GO.db, marray, gplots, gtools, gdata
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db, human.db0, mouse.db0, rat.db0, fly.db0, yeast.db0, arabidopsis.db0, zebrafish.db0, ecoliK12.db0, ecoliSakai.db0, hgu95av2cdf, affy
simpleaffy, R2HTML, affydata, affyPLM, genefilter, annaffy, gcrma, hugene10sttranscriptcluster.db
BSgenome,
BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
drosophila2probe, hgu95av2probe,
hgu95av2cdf, affy, affydata (>= 1.11.5),
RUnit
hgu95av2.db (>= 1.13.0), ALL, GO.db (>= 1.13.0), annotate, multtest,
genefilter, RColorBrewer, Rgraphviz, xtable, SparseM
RBGL, Rgraphviz (>= 1.18.0), KEGG.db, org.Hs.eg.db, hgu133plus2.db, SPIA
class, e1071, ipred, randomForest, gpls, pamr, rpart,
MASS, nnet, ALL, gbm, mlbench, hgu95av2.db, som,
RColorBrewer, hu6800.db,
golubEsets, ada, keggorth, kernlab, sfsmisc
GO.db, GSEABase, KEGG.db, GEOquery, org.Hs.eg.db, hgu95av2.db, Ruuid
org.Hs.eg.db, org.Mm.eg.db, org.Dm.eg.db, org.Rn.eg.db, org.Sc.sgd.db, hom.Hs.inp.db, hom.Mm.inp.db, hom.Dm.inp.db, hom.Rn.inp.db, hom.Sc.inp.db, Rgraphviz, ppiStats
genomewidesnp6Crlmm, hapmapsnp6, RColorBrewer, genefilter, RSQLite, oligoClasses (>= 1.5.15), Biobase, methods
MergeMaid,
siggenes,
genefilter,
MASS,
RColorBrewer,
GeneMeta
Biobase, hgu95av2.db, genefilter, Biostrings (>= 2.4.4), rae230a.db,
rae230aprobe, tkWidgets, XML (>= 0.92-2), GO.db, org.Hs.eg.db,
org.Mm.eg.db, hom.Hs.inp.db
MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata, hgu133atagcdf
hapmapsnp5, genomewidesnp5Crlmm (>= 1.0.2), genomewidesnp6Crlmm (>= 1.0.2), methods, GGdata, snpMatrix
Biobase (>= 1.99.10), class, hgu95av2.db, methods, tkWidgets
Biobase, Rgraphviz, annotate, fibroEset, hgu95av2.db, hu6800.db,
hgu133a.db
vsn, golubEsets, KEGG.db, hu6800.db, GOstats, Rgraphviz, GO.db, annotate
beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db, lumiHumanIDMapping, genefilter, RColorBrewer
affy, hgu95av2cdf, hgu95av2probe, hu6800cdf, hu6800probe
hapmap100kxba, pd.mapping50k.xba240, pd.hg18.60mer.expr, maqcExpression4plex, genefilter, limma, RColorBrewer
annotate, genefilter, maSigPro, pamr, pdmclass,
Rgraphviz, affy ,annaffy, affyPLM, multtest, ssize, sizepower,
siggenes, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, Biostrings, IRanges, rtracklayer
mvtnorm, graph, Rgraphviz, annotate, genefilter, Category (>= 2.9.7),
org.EcK12.eg.db (>= 2.2.6), GOstats
humanStemCell, microRNA (>= 1.1.1), genefilter, limma, org.Hs.eg.db
affy, annotate, genefilter, KernSmooth, scrime (>= 1.1.2)
ALL, hgu95av2.db, hgu133a.db, genefilter,
xtable, multtest, Rgraphviz, globaltest
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db, human.db0,
hgu95av2cdf, affy, KEGG.db
BSgenome (>= 1.13.14),
BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
drosophila2probe, hgu95av2probe,
GenomicFeatures (>= 0.1.3),
hgu95av2cdf, affy, affydata (>= 1.11.5),
RUnit
MASS, class, nnet, glmnet, e1071, randomForest, plsgenomics, gbm, mgcv, corpcor, limma
GO.db, KEGG.db, biomaRt, AnnotationDbi, org.Hs.eg.db, org.Rn.eg.db, org.Mm.eg.db, org.Dm.eg.db, Heatplus, RColorBrewer
RBGL, KEGG.db, org.Hs.eg.db, hgu133plus2.db, SPIA
class, e1071, ipred, randomForest, gpls, pamr, rpart,
MASS, nnet, ALL, gbm, mlbench, hgu95av2.db, som,
RColorBrewer, hu6800.db,
golubEsets, ada, keggorth, kernlab, mboost, sfsmisc, party
rtracklayer (>= 1.3.1), mclust, topGO (>= 1.13.1)
RSQLite, VanillaICE, RColorBrewer, genefilter, pd.mapping50k.xba240
genomewidesnp6Crlmm, hapmapsnp6, RColorBrewer, genefilter, RSQLite, oligoClasses (>= 1.6.0), Biobase, methods
hapmapsnp5, hapmapsnp6, genomewidesnp5Crlmm (>= 1.0.2),genomewidesnp6Crlmm (>= 1.0.2), snpMatrix, VanillaICE (>= 1.7.8), GGdata
Biobase (>= 2.5.5), Rgraphviz, annotate, fibroEset, hgu95av2.db,
hu6800.db, hgu133a.db
vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, annotate, Biobase (>= 2.5.5), survival, GSEABase
GenomicFeatures, GenomicFeatures.Hsapiens.UCSC.hg18, rtracklayer, org.Hs.eg.db, snpMatrix,
lumiHumanIDMapping, GGBase, GGtools, hmyriB36
affy, marray, MASS, org.Hs.eg.db, splines, statmod (>= 1.2.2), vsn
annotate, genefilter, maSigPro, pamr, pdmclass,
Rgraphviz, affy ,annaffy, affyPLM, multtest, ssize, sizepower,
siggenes, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, Biostrings, IRanges, rtracklayer,
hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db
humanStemCell, microRNA (>= 1.1.1), genefilter, limma, org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg18
RUnit,
BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.11),
SNPlocs.Hsapiens.dbSNP.20071016,
hgu95av2probe,
Biobase
ALL, hgu95av2.db, biclust, GO.db, KEGG.db, AnnotationDbi, affy
org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db
org.Mm.eg.db,
GenomicFeatures.Hsapiens.UCSC.hg18,
BSgenome,
BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.14),
RUnit
RUnit, BSgenome, GenomicFeatures, Rsamtools, EatonEtAlChIPseq,
leeBamViews, org.Sc.sgd.db, BSgenome.Scerevisiae.UCSC.sacCer2
Biobase, annotate, GO.db, KEGG.db, golubEsets, hu6800.db, vsn, GSEABase
class, e1071, ipred, randomForest, gpls, pamr, rpart,
MASS, nnet, ALL, gbm, mlbench, hgu95av2.db, som,
RColorBrewer, hu6800.db,
golubEsets, ada, keggorthology, kernlab, mboost, sfsmisc, party
genomewidesnp6Crlmm, hapmapsnp6, RColorBrewer, genefilter, RSQLite
siggenes,
genefilter,
MASS,
RColorBrewer,
GeneMeta
hapmapsnp6,
genomewidesnp6Crlmm (>= 1.0.2),
snpMatrix
igraph (>= 0.5.2), Matrix, GOstats,
GO.db, KEGG.db, biclust, MASS, xtable, ALL, hgu95av2.db
frma, affyPLM, hgu133aprobe, hgu133atagprobe, hgu133plus2probe, hgu133acdf, hgu133atagcdf, hgu133plus2cdf, hgu133afrmavecs, frmaExampleData
GenomicFeatures, rtracklayer, org.Hs.eg.db, snpMatrix,
SNPlocs.Hsapiens.dbSNP.20080617, lumiHumanIDMapping, GGBase, GGtools, hmyriB36
pd.genomewidesnp.6,
pd.genomewidesnp.5,
pd.mapping50k.hind240,
pd.mapping50k.xba240,
pd.mapping250k.sty,
pd.mapping250k.nsp,
genomewidesnp6Crlmm,
genomewidesnp5Crlmm
pd.hg.u95av2,
pd.huex.1.0.st.v2,
pd.mapping50k.xba240,
pd.hg18.60mer.expr,
pd.2006.07.18.hg18.refseq.promoter
hapmap100kxba,
pd.mapping50k.xba240,
pd.hg18.60mer.expr,
maqcExpression4plex,
genefilter,
limma,
RColorBrewer
annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome,
Rgraphviz, affy ,annaffy, affyPLM, multtest, ssize, sizepower,
siggenes, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, Biostrings, IRanges, rtracklayer
humanStemCell, microRNA (>= 1.1.1), genefilter, limma, org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19
faahKO, msdata, multtest, ncdf, rgl, MassSpecWavelet (>= 1.5.2), RANN, snow
RUnit,
BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.11),
SNPlocs.Hsapiens.dbSNP.20100427,
hgu95av2probe,
Biobase
rgl, impute, DLBCL, genefilter, xtable, ALL, limma, hgu95av2.db
MASS, class, nnet, glmnet, e1071, randomForest, plsgenomics, gbm, mgcv, corpcor, limma, st
corpcor, fields, graph, KEGGgraph, lattice, marray, RBGL, rrcov, Rgraphviz
illuminaHumanv1.db, org.Hs.eg.db, SNPlocs.Hsapiens.dbSNP.20100427,
rpart, rtracklayer, GSEABase, ceu1kg, ceuhm3,
genefilter, hmyriB36
org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Sco.eg.db, org.Ss.eg.db, org.Xl.eg.db
GO.db, KEGG.db, biomaRt, AnnotationDbi, org.Hs.eg.db, org.Rn.eg.db, org.Mm.eg.db, org.Dm.eg.db
rtracklayer, biomaRt,
org.Mm.eg.db,
GenomicFeatures.Hsapiens.UCSC.hg18,
Biostrings, BSgenome,
BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.14),
RUnit
KEGG.db, GO.db, org.Dm.eg.db, GOstats, org.Ce.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Hs.eg.db, snow
hapmapsnp6,
genomewidesnp6Crlmm (>= 1.0.2),
snpMatrix,
ellipse
Biobase (>= 1.99.10), class, hgu95av2.db, methods, tkWidgets, ALL
pd.hg.u95av2,
pd.huex.1.0.st.v2,
pd.mapping50k.xba240,
pd.hg18.60mer.expr,
pd.2006.07.18.hg18.refseq.promoter,
pd.hugene.1.0.st.v1
annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome,
Rgraphviz, affy ,annaffy, affyPLM, multtest, ssize, sizepower,
siggenes, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
metaArray, MergeMaid, biomaRt, GenomeGraphs,AffyCompatible, Biostrings, IRanges, rtracklayer, Genominator,
hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db,
HuExExonProbesetLocationHg19, MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA
Matrix, mvtnorm, graph, genefilter, Category, org.EcK12.eg.db, GOstats
faahKO, msdata, multtest, ncdf, rgl, MassSpecWavelet (>= 1.5.2), RANN, snow, KEGGSOAP
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db, human.db0,
hgu95av2cdf, affy, KEGG.db, XML
rgl, impute, DLBCL, genefilter, xtable, ALL, limma, hgu95av2.db, XML
BSgenome (>= 1.13.14),
BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
drosophila2probe, hgu95av2probe, hgu133aprobe,
GenomicFeatures (>= 1.3.14),
hgu95av2cdf, affy, affydata (>= 1.11.5),
RUnit
illuminaHumanv1.db, org.Hs.eg.db, SNPlocs.Hsapiens.dbSNP.20100427,
rpart, rtracklayer, GSEABase, ceu1kg, ceuhm3, SNPlocs.Hsapiens.dbSNP.20090506,
genefilter, hmyriB36
limma, qpgraph, graph, Rgraphviz, RColorBrewer, genefilter, GSVAdata
rtracklayer, biomaRt,
org.Mm.eg.db,
Biostrings, BSgenome,
BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.14),
BSgenome.Celegans.UCSC.ce2,
RUnit
RUnit, BSgenome, GenomicFeatures, Rsamtools,
EatonEtAlChIPseq (>= 0.0.2), leeBamViews,
org.Sc.sgd.db, BSgenome.Scerevisiae.UCSC.sacCer2
hapmapsnp6,
genomewidesnp6Crlmm (>= 1.0.4),
snpMatrix,
ellipse,
RUnit
RPostgreSQL, zoo, maps, mapdata, plotrix, TTR
oligo, frma, affyPLM, hgu133aprobe, hgu133atagprobe, hgu133plus2probe, hgu133acdf, hgu133atagcdf, hgu133plus2cdf, hgu133afrmavecs, frmaExampleData
vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, annotate, Biobase (>= 2.5.5), survival, GSEABase, mboost, penalized
GenomicFeatures, rtracklayer, org.Hs.eg.db, chopsticks,
SNPlocs.Hsapiens.dbSNP.20080617, lumiHumanIDMapping, GGBase, GGtools, hmyriB36
lumi, lattice, limma, xtable, GGHumanMethCancerPanelv1.db
hapmap100kxba,
pd.mapping50k.xba240,
pd.huex.1.0.st.v2,
pd.hg18.60mer.expr,
maqcExpression4plex,
genefilter,
limma,
RColorBrewer,
oligoData
annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome,
Rgraphviz, affy ,annaffy, affyPLM, multtest, ssize, sizepower,
siggenes, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
metaArray, MergeMaid, biomaRt, GenomeGraphs,AffyCompatible, Biostrings, IRanges, rtracklayer, Genominator,
hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db, HuExExonProbesetLocation,
MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db,
human.db0, hgu95av2cdf, org.Sc.sgd.db, org.At.tair.db, affy,
KEGG.db, XML, RCurl, RUnit
illuminaHumanv1.db, org.Hs.eg.db,
SNPlocs.Hsapiens.dbSNP.20100427, rpart, rtracklayer, ceu1kg,
SNPlocs.Hsapiens.dbSNP.20090506, chopsticks, GGdata, genefilter
limma, qpgraph, graph, Rgraphviz, RColorBrewer, genefilter,
GSVAdata
rtracklayer, biomaRt, org.Mm.eg.db, Biostrings, BSgenome,
BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.14),
BSgenome.Celegans.UCSC.ce2, RUnit
RUnit, BSgenome, GenomicFeatures, Rsamtools (>= 1.5.66),
EatonEtAlChIPseq (>= 0.0.3), leeBamViews, edgeR, DESeq,
rtracklayer, org.Sc.sgd.db, BSgenome.Scerevisiae.UCSC.sacCer2,
DEXSeq, pasilla
Rgraphviz, RBGL, KEGG.db, org.Hs.eg.db, hgu133plus2.db, SPIA
GenomicRanges, IRanges, BSgenome, gplots, grid, MASS,
gsmoothr, edgeR, DNAcopy, Ringo, aroma.affymetrix, zoo,
ShortRead, BSgenome.Hsapiens.UCSC.hg18
org.Hs.eg.db, org.Mm.eg.db, org.Dm.eg.db, org.Rn.eg.db,
org.Sc.sgd.db, hom.Hs.inp.db, hom.Mm.inp.db, hom.Dm.inp.db,
hom.Rn.inp.db, hom.Sc.inp.db, Rgraphviz, ppiStats
ShortRead (>= 1.11.30), GenomicFeatures, RUnit, KEGG.db
RSQLite, VanillaICE, RColorBrewer, genefilter,
pd.mapping50k.xba240
crlmm (>= 1.11.55), genomewidesnp6Crlmm, hapmapsnp6,
RColorBrewer, genefilter, RSQLite
RUnit, BSgenome.Hsapiens.UCSC.hg18,
TxDb.Hsapiens.UCSC.hg18.knownGene,
SNPlocs.Hsapiens.dbSNP.20090506,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
BSgenome.Dmelanogaster.UCSC.dm3, PolyPhen.Hsapiens.dbSNP131,
SIFT.Hsapiens.dbSNP132
Biobase, hgu95av2.db, genefilter, Biostrings (>= 2.4.4),
rae230a.db, rae230aprobe, tkWidgets, XML (>= 0.92-2), GO.db,
org.Hs.eg.db, org.Mm.eg.db, hom.Hs.inp.db
BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome,
rtracklayer,GenomicFeatures, Rsamtools
hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.4), snpStats,
ellipse, RUnit, ff
igraph (>= 0.5.5), Matrix, GOstats, GO.db, KEGG.db, biclust,
MASS, xtable, ALL, hgu95av2.db
Biobase (>= 1.99.10), class, hgu95av2.db, methods, tkWidgets,
ALL
GeneMeta, breastCancerVDX, breastCancerMAINZ,
breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT,
breastCancerNKI
GeneAnswers, beadarray, limma, vsn, lumiBarnes,
lumiHumanAll.db, lumiHumanIDMapping, genefilter, RColorBrewer
lumi, lattice, limma, xtable, IlluminaHumanMethylation27k.db
(>= 1.4.4), IlluminaHumanMethylation450k.db, ggplot2, SQN,
MASS, matrixStats, parallel, IlluminaHumanMethylation450kprobe
RSQLite, hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
pd.genomewidesnp.5, pd.mapping50k.hind240,
pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
genomewidesnp6Crlmm, genomewidesnp5Crlmm, VanillaICE
hapmap100kxba, pd.mapping50k.xba240, pd.huex.1.0.st.v2,
pd.hg18.60mer.expr, maqcExpression4plex, genefilter, limma,
RColorBrewer, oligoData
annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno,
chipseq, BSgenome, Rgraphviz, affy ,annaffy, affyPLM, multtest,
ssize, sizepower, siggenes, RankProd, org.Hs.eg.db,
org.Mm.eg.db, org.Rn.eg.db, edgeR, metaArray, MergeMaid,
biomaRt, GenomeGraphs,AffyCompatible, rtracklayer, Genominator,
EDASeq, limma, DESeq, goseq, hugene10sttranscriptcluster.db,
mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db,
GOstats, AnnotationDbi, preprocessCore, baySeq,
HuExExonProbesetLocation, MoExExonProbesetLocation,
RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9,
BSgenome.Rnorvegicus.UCSC.rn4, R.utils
humanStemCell, microRNA (>= 1.1.1), genefilter, limma,
org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, hgu133plus2.db, Rsamtools
Biobase, CPE, Hmisc, SuppDists, clinfun, ipred, prodlim,
survJamda, xtable
faahKO, msdata, multtest, ncdf, rgl, MassSpecWavelet (>=
1.5.2), RANN, snow
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db,
org.Sc.sgd.db, org.At.tair.db, KEGG.db, RUnit,
TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db, org.Hs.eg.db,
reactome.db, AnnotationForge, graph,
org.TguttataTestingSubset.eg.db, BiocStyle, knitr
BiocInstaller, BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.11),
BSgenome.Hsapiens.UCSC.hg19.masked,
BSgenome.Rnorvegicus.UCSC.rn5, SNPlocs.Hsapiens.dbSNP.20100427,
hgu95av2probe, Biobase, RUnit
Biobase, S4Vectors, IRanges, GenomicRanges, AnnotationDbi,
oligoClasses, oligo, affyPLM, flowClust, affy, RUnit, DESeq2
doParallel, snow, Rmpi, GenomicRanges,
RNAseqData.HNRNPC.bam.chr14, Rsamtools, GenomicAlignments,
ShortRead, RUnit, BiocStyle, knitr
knitr (>= 1.7), rmarkdown, BiocGenerics, RUnit
RUnit, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
RSQLite, scatterplot3d, gplots, fmcsR,snow, RPostgreSQL,
BiocStyle,knitr,knitcitations, knitrBootstrap, ChemmineOB (>=
1.3.8), ChemmineDrugs
limma, edgeR, car, Rmixmod, ggplot2, gridExtra, BiocStyle,
pamr, sparsediscrim, PoiClaClu, curatedOvarianData,
parathyroidSE, knitr, klaR, gtable, scales
knitr, biomaRt, RUnit, BiocStyle, BiocGenerics, BiocParallel
RUnit, gplots, knitr, RColorBrewer, BiocStyle, airway,
pasilla (>= 0.2.10), DESeq, vsn
org.Hs.eg.db, clusterProfiler, ReactomePA, ChIPseeker, knitr
BiocStyle, knitr, yeastRNASeq, leeBamViews, edgeR
RGtk2, RCurl, RDAVIDWebService, gage, topGO, KEGGprofile,
GO.db, KEGG.db, reactome.db, RUnit, BiocGenerics,
org.Sc.sgd.db, knitr, rmarkdown, AnnotationDbi
GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20120608,
multtest, aod, rmeta
DOSE, clusterProfiler, org.Hs.eg.db, ChIPseeker, ReactomePA,
BiocInstaller, knitr
MASS, GSVAdata, ALL, tweeDEseqCountData, GSEABase, annotate,
org.Hs.eg.db, Biobase, genefilter, hgu95av2.db, edgeR,
BiocStyle
limma, RColorBrewer, genefilter, mclust, edgeR, snow,
parallel, GSVAdata
TxDb.Hsapiens.UCSC.hg19.knownGene, PFAM.db, AnnotationDbi,
gtable, gWidgets, gWidgetsRGtk2, RGtk2, RColorBrewer
GenomicRanges, Rsamtools, GenomicAlignments, BSgenome,
GenomicFeatures, BSgenome.Scerevisiae.UCSC.sacCer2,
BSgenome.Celegans.UCSC.ce2, BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, RUnit, BiocStyle, knitr
rtracklayer, BSgenome, GenomicFeatures,
RNAseqData.HNRNPC.bam.chr14, pasillaBamSubset,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
BSgenome.Dmelanogaster.UCSC.dm3, BSgenome.Hsapiens.UCSC.hg19,
DESeq, edgeR, RUnit, BiocStyle
org.Mm.eg.db, BSgenome, BSgenome.Hsapiens.UCSC.hg19 (>=
1.3.17), BSgenome.Celegans.UCSC.ce2,
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.17), mirbase.db,
FDb.UCSC.tRNAs, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1), Rsamtools,
pasillaBamSubset (>= 0.0.5), RUnit, BiocStyle, knitr
BiocStyle, RUnit, genefilter, deepSNV,
RNAseqData.HNRNPC.bam.chr14
AnnotationDbi (>= 1.21.1), AnnotationHub, BSgenome,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Scerevisiae.UCSC.sacCer2,
Biostrings (>= 2.25.3), Rsamtools (>= 1.13.53),
GenomicAlignments, rtracklayer, KEGG.db, KEGGgraph,
GenomicFeatures, TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Athaliana.BioMart.plantsmart22, org.Sc.sgd.db,
VariantAnnotation, edgeR, DESeq, DEXSeq, pasilla,
pasillaBamSubset, RUnit, digest, BiocStyle
class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL,
gbm, mlbench, hgu95av2.db, som, RColorBrewer, hu6800.db,
lattice, caret (>= 5.07), golubEsets, ada, keggorthology,
kernlab, mboost, party, BiocGenerics
BiocStyle, msmsTests, ggplot2, RUnit, BiocGenerics
testthat, zoo, knitr (>= 1.1.0), rols, Rdisop, pRoloc,
pRolocdata (>= 1.0.7), msdata, roxygen2, rgl
BiocStyle, RUnit, BiocGenerics, minfiData, knitr
MotifDb, BSgenome.Dmelanogaster.UCSC.dm3,
PWMEnrich.Dmelanogaster.background, testthat, gtools, parallel,
PWMEnrich.Hsapiens.background, PWMEnrich.Mmusculus.background
testthat (>= 0.8), ggplot2, BSgenome.Hsapiens.UCSC.hg19,
biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, knitr, BiocStyle
R.cache (>= 0.9.0), digest, snowfall, BSgenome, GenomeInfoDb
BiocStyle, knitr, RColorBrewer, zebrafishRNASeq, DESeq
h5vcData, testthat, knitr, optparse,
BSgenome.Hsapiens.UCSC.hg19
mzR, xcms, msdata, isobar, MALDIquant (>= 1.11),
MALDIquantForeign, readBrukerFlexData, rTANDEM, synapter,
synapterdata, IPPD, Rdisop, OrgMassSpecR, BRAIN, rols, hpar,
GO.db, org.Hs.eg.db, biomaRt, RColorBrewer, ggplot2, reshape2,
xtable, lattice, mzID, pRoloc, pRolocdata, knitr, BiocStyle,
MSGFplus, MSGFgui, MSnID
RUnit, BiocGenerics, knitr, knitcitations, formatR,
org.Sc.sgd.db, BioNet, DLBCL, msm
parallel, RUnit, lattice, BiocStyle, BiocGenerics, knitr
BiocStyle, Gviz, GenomicRanges, IRanges, gplots, knitr
RUnit, BiocGenerics, knitr (>= 1.6), rmarkdown, BiocStyle (>=
1.3)
parallel, BiocStyle, BiocGenerics, RUnit, Rcpp
org.Hs.eg.db, prebsdata, Rsamtools (>= 1.17.0),
TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
testthat, knitr, parallel, BSgenome.Hsapiens.UCSC.hg19,
SomaticCancerAlterations, COSMIC.67, ggdendro, fastICA
JASPAR2014(>= 0.99.3), RUnit, BiocGenerics, BiocStyle
RUnit, BiocGenerics, gageData, Rgraphviz, DEGraph
RUnit, SNPchip, human610quadv1bCrlmm,
BSgenome.Hsapiens.UCSC.hg18, ArrayTV
R.oo (>= 1.18.0), R.utils (>= 1.32.4),
AffymetrixDataTestFiles
hgu95av2.db, genefilter, Biostrings (>= 2.25.10), rae230a.db,
rae230aprobe, tkWidgets, GO.db, org.Hs.eg.db, org.Mm.eg.db,
hom.Hs.inp.db, humanCHRLOC, Rgraphviz, RUnit,
xtable, blimaTestingData, BiocStyle, illuminaHumanv4.db, lumi
knitr, methods, GO.db, KEGG.db, estrogen, org.Hs.eg.db,
hgu95av2.db, limma, affy, genefilter
BSgenome.Mmusculus.UCSC.mm9,
TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr,
rtracklayer
BiocStyle, EBSeq, DESeq, DESeq2 (>= 1.1.31), baySeq (>=
1.16.0), genefilter, NOISeq, DSS, TCC, samr, NBPSeq
cluster, plyr, NMFN, stringr, GenomicFeatures, GenomicRanges,
rjson
survival,sva,BiocStyle, xtable, genefilter, logging, Biobase
survival, RUnit, metafor, genefilter, logging, sva, xtable,
futile.logger, BiocStyle
devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6),
knitrBootstrap (>= 0.9.0), RefManageR, rmarkdown (>= 0.3.3),
devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6),
knitrBootstrap (>= 0.9.0), rmarkdown (>= 0.3.3), testthat
biovizBase, bumphunter, derfinderData (>= 0.99.0), devtools
(>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6),
knitrBootstrap (>= 0.9.0), rmarkdown (>= 0.3.3), testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene
biovizBase, devtools (>= 1.6), derfinderData (>= 0.99.0),
ggplot2, knitcitations (>= 1.0.1), knitr (>= 1.6),
knitrBootstrap (>= 0.9.0), rmarkdown (>= 0.3.3), testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle (>= 1.4.1), BSgenome (>= 1.34.1),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), GenomicFeatures (>=
1.18.3), RnaSeqTutorial (>= 0.3.1), RUnit (>= 0.4.28)
testthat, roxygen2, knitr, antiProfilesData, hgu133plus2.db,
knitrBootstrap, Mus.musculus
Rgraphviz, flowViz, ncdf, flowStats, testthat,
flowWorkspace,openCyto
parallel, RUnit, BiocStyle, BiocGenerics, knitr
class, hgu95av2.db, tkWidgets, ALL, ROC, DESeq, pasilla,
BiocStyle, knitr
vsn, BSgenome.Hsapiens.UCSC.hg19, Homo.sapiens,
TxDb.Hsapiens.UCSC.hg19.knownGene, chipseq,
TxDb.Mmusculus.UCSC.mm9.knownGene, knitr, BiocStyle, testthat
BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, bit64, biomaRt,
BSgenome.Hsapiens.NCBI.GRCh38
RUnit, hgu95av2.db, knitr,GenomicRanges, GOstats, ggbio,
GO.db, Gviz, rtracklayer, metagenomeSeq, gplots, vegan, Biobase
MSnbase, OrgMassSpecR, XML, biomaRt, ggplot2, RJSONIO, Hmisc,
gplots, RColorBrewer, gridExtra, limma, boot, distr, DBI, MASS
statmod (>= 1.2.2), splines, locfit, MASS, ellipse, Biobase,
affy, vsn, AnnotationDbi, org.Hs.eg.db, GO.db, illuminaio,
BiasedUrn
annotate, BiocGenerics, biom, knitr, gss, RUnit, vegan
BiocGenerics, GenomicRanges, rtracklayer, Rsamtools, MADAM,
survcomp, VennDiagram, knitr, zoo, RUnit, BiocInstaller,
BSgenome, RSQLite
lumi, lattice, limma, xtable, IlluminaHumanMethylation27k.db
(>= 1.4.4), IlluminaHumanMethylation450k.db, SQN, MASS,
matrixStats, parallel, rtracklayer, Biostrings, methyAnalysis,
FDb.InfiniumMethylation.hg19, TCGAMethylation450k,
TxDb.Hsapiens.UCSC.hg19.knownGene,
IlluminaHumanMethylation450kanno.ilmn12.hg19, Homo.sapiens,
knitr
IlluminaHumanMethylation450kmanifest (>= 0.2.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19, minfiData (>=
0.4.1), FlowSorted.Blood.450k (>= 1.0.1), RUnit, digest
msdata, RUnit, faahKO, mzID, BiocStyle, knitr, BiocGenerics
RSQLite, hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
pd.genomewidesnp.5, pd.mapping50k.hind240,
pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6),
RUnit, human370v1cCrlmm
flowWorkspaceData, knitr, testthat, utils, tools, parallel
RUnit, BiocGenerics, knitr, knitrBootstrap, bibtex,
knitcitations (>= 1.0-1)
testthat, knitr, BiocStyle, rmarkdown, RColorBrewer, igraph,
biomaRt, estrogen, affy, hgu95av2, hgu95av2cdf, limma
RforProteomics (>= 1.0.16), knitr, BiocStyle, rpx, R.utils,
RUnit,BiocGenerics
RUnit, BiocGenerics, BiocStyle, genefilter, org.EcK12.eg.db,
rlecuyer, snow, Category, GOstats
BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1),
genefilter, limma, org.Hs.eg.db, hgu133plus2.db,
BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene
GO.db, PFAM.db, reactome.db, hgu133a.db, breastCancerUPP,
survival, foreach, doRNG, Rgraphviz, GOstats
shinyMethylData, minfiData, BiocStyle, RUnit, digest, knitr
BiocGenerics, RUnit, BiocStyle, curatedOvarianData,
parathyroidSE, superpc
limma, pamr, bladderbatch, BiocStyle, zebrafishRNASeq
ape, RUnit, BiocStyle, biomaRt, GenomicFeatures, BiocParallel
BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData,
pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart22
testthat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20120608, knitr
GenomicRanges, VariantAnnotation, Rsamtools, rtracklayer,
GenomeInfoDb, BiocStyle, knitr, AnnotationForge, rBiopaxParser,
RUnit
BiocInstaller, Biobase, BSgenome.Celegans.UCSC.ce2,
BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Hsapiens.UCSC.hg38.masked,
BSgenome.Mmusculus.UCSC.mm10, BSgenome.Rnorvegicus.UCSC.rn5,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
SNPlocs.Hsapiens.dbSNP141.GRCh38,
XtraSNPlocs.Hsapiens.dbSNP141.GRCh38, hgu95av2probe, RUnit
Biobase, S4Vectors, IRanges, GenomicRanges, AnnotationDbi,
oligoClasses, oligo, affyPLM, flowClust, affy, DESeq2, MSnbase,
annotate, RUnit
BiocGenerics, tools, foreach, BatchJobs, BBmisc, doParallel,
Rmpi, GenomicRanges, RNAseqData.HNRNPC.bam.chr14, Rsamtools,
GenomicAlignments, ShortRead, codetools, RUnit, BiocStyle,
knitr
BiocStyle, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg18.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Mmusculus.UCSC.mm9.knownGene,
TxDb.Rnorvegicus.UCSC.rn4.ensGene,
TxDb.Celegans.UCSC.ce6.ensGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg38.knownGene
reactome.db, BSgenome.Ecoli.NCBI.20080805, org.Ce.eg.db,
org.Hs.eg.db, BSgenome.Celegans.UCSC.ce10,
BSgenome.Drerio.UCSC.danRer7,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, gplots, RUnit, BiocStyle,
rtracklayer
clusterProfiler, DOSE, ReactomePA, org.Hs.eg.db, knitr,
BiocStyle
ChemmineR, BiocStyle, knitr, knitcitations, knitrBootstrap
RSQLite, scatterplot3d, gplots, fmcsR,snow, RPostgreSQL,
BiocStyle,knitr,knitcitations, knitrBootstrap, ChemmineOB (>=
1.3.8), ChemmineDrugs, grid,gridExtra,png
limma, edgeR, car, Rmixmod, ggplot2, gridExtra, BiocStyle,
pamr, sparsediscrim, PoiClaClu, curatedOvarianData,
parathyroidSE, knitr, klaR, gtable, scales, e1071, rmarkdown
testthat (>= 0.3), knitr, markdown, cluster, dendextend
testthat, gplots, knitr, RColorBrewer, BiocStyle, airway,
pasilla (>= 0.2.10), DESeq, vsn
BiocStyle, EBImage, RColorBrewer, RNAinteractMAPK,
RSVGTipsDevice, cgdsr, hwriter, xtable, beeswarm
BiocStyle, knitr, yeastRNASeq, leeBamViews, edgeR, KernSmooth
minfiData (>= 0.4.1), RPMM, RUnit, BiocGenerics
gdsfmt, SNPRelate, RUnit, BiocGenerics, knitr
DOSE, clusterProfiler, org.Hs.eg.db, knitr, BiocStyle,
BiocInstaller
ShortRead, rtracklayer, BSgenome, GenomicFeatures,
RNAseqData.HNRNPC.bam.chr14, pasillaBamSubset,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
BSgenome.Dmelanogaster.UCSC.dm3, BSgenome.Hsapiens.UCSC.hg19,
DESeq, edgeR, RUnit, BiocStyle
org.Mm.eg.db, org.Hs.eg.db, BSgenome,
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce2, BSgenome.Dmelanogaster.UCSC.dm3 (>=
1.3.17), mirbase.db, FDb.UCSC.tRNAs,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1),
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,
TxDb.Hsapiens.UCSC.hg38.knownGene,
SNPlocs.Hsapiens.dbSNP141.GRCh38, Rsamtools, pasillaBamSubset
(>= 0.0.5), RUnit, BiocStyle, knitr
BiocStyle, RUnit, genefilter, deepSNV,
RNAseqData.HNRNPC.bam.chr14, Biostrings
AnnotationDbi (>= 1.21.1), AnnotationHub, BSgenome,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Scerevisiae.UCSC.sacCer2,
Biobase, BiocStyle, Biostrings (>= 2.25.3), DESeq, DEXSeq,
GenomicAlignments, GenomicFeatures, KEGG.db, KEGGgraph, RUnit,
Rsamtools (>= 1.13.53), TxDb.Athaliana.BioMart.plantsmart22,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation, annotate,
digest, edgeR, hgu95av2.db, org.Hs.eg.db, org.Mm.eg.db,
org.Sc.sgd.db, pasilla, pasillaBamSubset, rtracklayer
BiocStyle, httpuv, knitr, rmarkdown, testthat, ggbio,
ggplot2, BSgenome.Hsapiens.UCSC.hg19, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
parallel, BiocStyle, knitr, gdsfmt (>= 1.2.2), SNPRelate (>=
1.1.6)
RUnit, BiocGenerics, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm10, org.Hs.eg.db, org.Mm.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, rtracklayer
class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL,
gbm, mlbench, hgu95av2.db, som, RColorBrewer, hu6800.db,
lattice, caret (>= 5.07), golubEsets, ada, keggorthology,
kernlab, mboost, party
testthat, zoo, knitr (>= 1.1.0), rols, Rdisop, pRoloc,
pRolocdata (>= 1.0.7), msdata, roxygen2, rgl, BiocStyle,
imputeLCMD, norm, gplots
BiocStyle, knitr, MethylAidData, minfiData, RUnit
human610quadv1bCrlmm (>= 1.0.3), BSgenome.Hsapiens.UCSC.hg18,
BSgenome.Hsapiens.UCSC.hg19, SNPchip, RUnit
roxygen2 (>= 4.0.1), testthat, BiocStyle
rBiopaxParser (>= 2.1), RCurl, RCytoscape, graph
MotifDb, BSgenome.Dmelanogaster.UCSC.dm3,
PWMEnrich.Dmelanogaster.background, testthat, gtools, parallel,
PWMEnrich.Hsapiens.background, PWMEnrich.Mmusculus.background,
BiocStyle, knitr
testthat (>= 0.8), ggplot2, BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationHub, knitr,
rmarkdown, BiocStyle
BiocStyle, knitr, TxDb.Hsapiens.UCSC.hg19.knownGene,
biovizBase, biomaRt, AnnotationDbi, org.Hs.eg.db, shiny,
ChIPpeakAnno
knitr, rmarkdown, BiocStyle, mzR, xcms, msdata, isobar,
MALDIquant (>= 1.11), MALDIquantForeign, readBrukerFlexData,
rTANDEM, synapter, synapterdata, IPPD, Rdisop, OrgMassSpecR,
BRAIN, rols, hpar, GO.db, org.Hs.eg.db, biomaRt, RColorBrewer,
ggplot2, reshape2, xtable, lattice, mzID, pRoloc, pRolocdata,
MSGFplus, MSGFgui, MSnID, msmsTests, msmsEDA, corrplot,
Heatplus, gplots, VennDiagram
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10,
BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn5,
Category, GEOquery, GOstats, Gviz,
IlluminaHumanMethylation450kmanifest, RPMM, RefFreeEWAS,
RnBeads.hg19, RnBeads.mm10, RnBeads.mm9, RnBeads.rn5, XML,
annotate, biomaRt, foreach, doParallel, ggbio, isva, mclust,
mgcv, minfi, nlme, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
quadprog, rtracklayer, sva, wateRmelon, wordcloud, argparse
parallel, RUnit, knitr, MASS, BiocGenerics
Biostrings, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Hsapiens.UCSC.hg19.masked (>= 1.3.19)
RUnit, BiocGenerics, knitr (>= 1.6), rmarkdown, BiocStyle (>=
1.3), roxygen2, doSNOW
parallel, BiocStyle, BiocGenerics, knitr, RUnit, Rcpp
testthat, knitr, parallel, BSgenome.Hsapiens.UCSC.hg19,
SomaticCancerAlterations, ggdendro, fastICA, sva
igraph, Gviz, TxDb.Hsapiens.UCSC.hg19.knownGene,
RNAseqData.HNRNPC.bam.chr14, RUnit
JASPAR2014(>= 0.99.3), RUnit, BiocStyle, knitr
knitr, aroma.light, affxparser, RUnit, BiocGenerics
RUnit, BiocGenerics, gageData, DEGraph, plotrix
BiocStyle, org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20120608,
MafDb.ALL.wgs.phase1.release.v3.20101123,
MafDb.ESP6500SI.V2.SSA137, MafDb.ExAC.r0.3.sites,
phastCons100way.UCSC.hg19, PolyPhen.Hsapiens.dbSNP131,
SIFT.Hsapiens.dbSNP137
R.oo (>= 1.19.0), R.utils (>= 2.0.0), AffymetrixDataTestFiles
affydata, hgfocuscdf, BiocStyle, knitr, hgu95av2.db, rgl
testthat (>= 0.9), Rsamtools, BiocStyle, knitr, rmarkdown
BiocStyle, RCurl, ape, ChemmineR, cellHTS2
testthat, RUnit, doParallel, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
org.Hs.eg.db, ReactomePA, pathview, KEGG.db,
RDAVIDWebService, knitr, BiocStyle
Biobase, annotate, kohonen, mclust, biwt, knitr
BiocStyle, EBSeq, DESeq, DESeq2 (>= 1.1.31), baySeq (>=
1.16.0), genefilter, NOISeq, TCC, samr, NBPSeq
BiocStyle, knitr, rmarkdown, minfiData, CopyNumber450kData,
RCurl
TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, BiocGenerics,
ReportingTools, BiocStyle
biovizBase, bumphunter (>= 1.7.6), derfinderData (>= 0.99.0),
devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6),
knitrBootstrap (>= 0.9.0), org.Hs.eg.db, rmarkdown (>= 0.3.3),
testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle (>= 1.6.0), BSgenome (>= 1.36.2),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), GenomicFeatures (>=
1.20.1), RnaSeqTutorial (>= 0.6.0), RUnit (>= 0.4.28)
knitr, BiocStyle, EnsDb.Hsapiens.v75 (>= 0.99.7), RUnit
Rgraphviz, flowViz, flowStats, testthat,
flowWorkspace,flowWorkspaceData,openCyto
affy, ArrayExpress, hgfocus.db, hgu133a.db, mgug4104a.db,
org.Hs.eg.db, org.Mm.eg.db, RUnit
BiocGenerics, KEGG.db, reactome.db, RUnit, GO.db, mgsa
geuvStore, knitr, rmarkdown, BiocStyle, RUnit, GGtools,
Homo.sapiens, IRanges
geuvPack, geuvStore, Rsamtools, knitr, rmarkdown, ggbio,
BiocStyle, Homo.sapiens
RUnit, knitr, RColorBrewer, genomationData, BiocGenerics,
rmarkdown, knitrBootstrap
phylobase, phytools, BiocStyle, knitr, testthat, rmarkdown
testthat (>= 0.3), knitr, GenomicRanges, RColorBrewer,
markdown
knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, bit64, biomaRt,
BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocGenerics
affy, AnnotationDbi, BiasedUrn, Biobase, ellipse, GO.db,
illuminaio, KEGGREST, locfit, MASS, org.Hs.eg.db, splines,
statmod (>= 1.2.2), vsn
BiocStyle, knitr, mAPKLData, hgu133plus2.db, RUnit,
BiocGenerics
BiocStyle, knitr, rmarkdown, limma, ALL, hgu95av2.db, RUnit,
BiocGenerics
annotate, BiocGenerics, biom, knitr, gss, RUnit, vegan,
interactiveDisplay
BiocGenerics, GenomicRanges, rtracklayer, Rsamtools,
survcomp, VennDiagram, knitr, zoo, RUnit, BiocInstaller,
BSgenome, RSQLite
lumi, lattice, limma, xtable, SQN, MASS, matrixStats,
parallel, rtracklayer, Biostrings, methyAnalysis,
TCGAMethylation450k,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
FDb.InfiniumMethylation.hg18 (>= 2.2.0), Homo.sapiens, knitr
IlluminaHumanMethylation450kmanifest (>= 0.2.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19, minfiData (>=
0.4.1), FlowSorted.Blood.450k (>= 1.0.1), RUnit, digest,
data.table
minfiData, BiocStyle, knitr, edgeR, tweeDEseqCountData
msdata (>= 0.3.5), RUnit, mzID, BiocStyle, knitr
hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
pd.genomewidesnp.5, pd.mapping50k.hind240,
pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6),
RUnit, human370v1cCrlmm, SNPchip, VanillaICE, crlmm
BSgenome.Hsapiens.UCSC.hg18, hapmap100kxba, pd.hg.u95av2,
pd.mapping50k.xba240, pd.huex.1.0.st.v2, pd.hg18.60mer.expr,
pd.hugene.1.0.st.v1, maqcExpression4plex, genefilter, limma,
RColorBrewer, oligoData, BiocStyle, knitr, RUnit, biomaRt,
AnnotationDbi, GenomeGraphs, RCurl, ACME
annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno,
chipseq, BSgenome, Rgraphviz, affy ,annaffy, affyPLM, multtest,
ssize, sizepower, RankProd, org.Hs.eg.db, org.Mm.eg.db,
org.Rn.eg.db, edgeR, metaArray, MergeMaid, biomaRt,
GenomeGraphs,AffyCompatible, rtracklayer, Genominator, EDASeq,
limma, DESeq, DEXSeq, goseq, hugene10sttranscriptcluster.db,
mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db,
GOstats, AnnotationDbi, preprocessCore, baySeq,
HuExExonProbesetLocation, MoExExonProbesetLocation,
RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA,
BSgenome.Hsapiens.UCSC.hg19, R.utils, cummeRbund,
BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn4,
DESeq2, GenomicAlignments, BiocParallel, KEGG.db, miRNApath,
miRNAtap, miRNAtap.db
testthat, pRolocdata (>= 1.5.8), roxygen2, synapter, xtable,
tsne, BiocStyle, hpar, dplyr
yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM,
gtools, biomaRt, snowfall, AnnotationDbi
BSgenome.Hsapiens.UCSC.hg38.masked,
TxDb.Hsapiens.UCSC.hg38.knownGene,
BSgenome.Mmusculus.UCSC.mm10.masked, GWASTools (>= 1.13.24),
VariantAnnotation, knitr
RforProteomics, knitr, BiocStyle, rpx, R.utils,
RUnit,BiocGenerics
affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX,
RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf, BiocStyle
BSgenome.Mmusculus.UCSC.mm9.masked,
BSgenome.Mmusculus.UCSC.mm10.masked,
BSgenome.Hsapiens.UCSC.hg18.masked,
BSgenome.Hsapiens.UCSC.hg19.masked,
BSgenome.Rnorvegicus.UCSC.rn5.masked
knitr, RColorBrewer, sqldf, BiocGenerics, testthat,
rcellminerData, BiocStyle
boot, tools, RUnit, BiocGenerics, knitr, xtable
BSgenome.Drerio.UCSC.danRer7, CAGEr, RUnit, BiocGenerics,
BiocStyle
BiocStyle, knitr, biomaRt, stringr, monocle
RUnit, BiocGenerics, BiocStyle, BiocParallel, plotrix
limma, pamr, bladderbatch, BiocStyle, zebrafishRNASeq,
testthat
synapterdata, xtable, tcltk, tcltk2, BiocStyle
ape, RUnit, BiocStyle, knitr, rmarkdown, biomaRt,
GenomicFeatures, BiocParallel
BiocStyle, knitr, AnnotationHub (>= 2.7.13)
knitr, rmarkdown, ComplexHeatmap, circlize, testthat
ExperimentHub, SNFtool, knitr, rmarkdown, testthat
knitr, rmarkdown, BiocStyle, org.Mm.eg.db, AnnotationDbi,
TBX20BamSubset, Rsamtools, ggplot2, testthat
knitr, rmarkdown, BiocStyle, testthat, ASICSdata
testthat, BiocStyle, lintr, knitr, rmarkdown
BiocStyle, knitr, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, phastCons100way.UCSC.hg19,
MotifDb, trackViewer, testthat
Biobase, BiocStyle, devtools, dynamicTreeCut, DT, GEOquery,
knitr, NMF, plotly, R2HTML, rbokeh, rmarkdown, Rtsne, testthat,
zoo
testthat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP144.GRCh37, BiocStyle, knitr, rmarkdown
knitr, BiocStyle, testthat, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm10
hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db, KEGG.db,
RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db,
org.Hs.eg.db, reactome.db, AnnotationForge, graph,
EnsDb.Hsapiens.v75, BiocStyle, knitr
BiocStyle, knitr, testthat, RSQLite, org.Hs.eg.db
biomaRt, httr, GenomeInfoDb (>= 1.17.1), Biostrings, affy,
hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens,
hom.Hs.inp.db, GO.db, BiocStyle, knitr, BiocManager
RUnit, knitr, BiocStyle, grasp2db, GenomeInfoDbData
IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation,
Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge,
rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR,
Biostrings, SummarizedExperiment, ExperimentHub, gdsfmt
testthat (>= 2.1.0), covr, knitr, rmarkdown, mtbls2
knitr, rmarkdown, testthat, tximport, BiocStyle,
GenomicFeatures, Biostrings
testthat, cowplot, knitr, rmarkdown, BiocStyle, NMF
testthat, BiocStyle, knitr, rmarkdown, pander
BiocManager, Biobase, BSgenome.Celegans.UCSC.ce2,
BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Hsapiens.UCSC.hg38.masked,
BSgenome.Mmusculus.UCSC.mm10, BSgenome.Rnorvegicus.UCSC.rn5,
BSgenome.Scerevisiae.UCSC.sacCer1,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
SNPlocs.Hsapiens.dbSNP144.GRCh38,
XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, hgu95av2probe, RUnit
knitr, rmarkdown, testthat, BiocStyle, TENxBUSData,
DropletUtils, ggplot2, TxDb.Hsapiens.UCSC.hg38.knownGene,
BSgenome.Hsapiens.UCSC.hg38, EnsDb.Hsapiens.v86
RUnit, BiocGenerics, knitr, rmarkdown, BiocStyle
reactome.db, org.Hs.eg.db, WGCNA, methods, GOSemSim,
testthat, knitr, rmarkdown, BiocStyle, airway, DESeq2, boot,
targetscan.Hs.eg.db, Hmisc, spelling
testthat, knitr, rmarkdown, lattice, latticeExtra,
rbenchmark, gplots, gridExtra, org.Hs.eg.db, ineq, covr
knitr, markdown, base, rmarkdown, ggplot2
RUnit, BiocGenerics, Biobase, RJSONIO, rmarkdown, devtools
(>= 1.4.1), usethis, BiocStyle
testthat, knitr, BiocStyle, rmarkdown, rtracklayer
Biobase, S4Vectors, IRanges, GenomicRanges, DelayedArray,
Biostrings, Rsamtools, AnnotationDbi, oligoClasses, oligo,
affyPLM, flowClust, affy, DESeq2, MSnbase, annotate, RUnit
testthat, BiocStyle, knitr, rmarkdown, FNN, RcppAnnoy,
RcppHNSW
knitr, dbplyr, org.Hs.eg.db, MultiAssayExperiment, BiocStyle,
ontoProc, ontologyPlot, pogos, GenomeInfoDb, restfulSE (>=
1.3.7), BiocFileCache, TxDb.Hsapiens.UCSC.hg19.knownGene,
Biobase, TxDb.Hsapiens.UCSC.hg18.knownGene, reshape2, testthat,
AnnotationDbi, FDb.InfiniumMethylation.hg19, EnsDb.Hsapiens.v75
BiocGenerics, tools, foreach, BatchJobs, BBmisc, doParallel,
Rmpi, GenomicRanges, RNAseqData.HNRNPC.bam.chr14,
TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation,
Rsamtools, GenomicAlignments, ShortRead, codetools, RUnit,
BiocStyle, knitr, batchtools, data.table
BiocStyle, knitr, rmarkdown, testthat, tm, SnowballC,
pdftools, visNetwork, clipr, blastula, kableExtra
GSEABase, airway, org.Hs.eg.db, DESeq2, limma, BiocFileCache,
GO.db, testthat, knitr, rmarkdown, BiocStyle
testthat, BiocStyle, knitr, rmarkdown, beachmat
BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt,
broom, colorspace, cowplot, dendsort, doParallel, foreach,
forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin,
IHW, limma, magrittr, Matrix, maxstat, nat, org.Hs.eg.db,
pheatmap, piano, readxl, Rtsne, tidyr, tidyverse, xtable
knitr, rmarkdown, BiocStyle, org.Mm.eg.db,
TxDb.Mmusculus.UCSC.mm9.knownGene
BSgenome.Drerio.UCSC.danRer7, DESeq2, FANTOM3and4CAGE,
BiocStyle, knitr, rmarkdown
knitr, rmarkdown, BiocStyle, testthat, GEOquery, rgl
BiocStyle, knitr, rmarkdown, testthat, diffcyt
knitr, rmarkdown, Matrix, testthat, vdiffr
knitr, testthat, ReactomePA, RUnit, BiocGenerics,
AnnotationHub, rtracklayer, pd.genomewidesnp.6, org.Hs.eg.db,
biovizBase, TxDb.Hsapiens.UCSC.hg18.knownGene, methods,
Biostrings,Homo.sapiens
Gviz (>= 1.7.4), BiocStyle, knitr, rmarkdown, testthat,
BSgenome.Drerio.UCSC.danRer10, BSgenome.Hsapiens.UCSC.hg38,
TxDb.Drerio.UCSC.danRer10.refGene, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Ggallus.UCSC.galGal3
minet, catnet, Rgraphviz, RUnit, BiocGenerics, igraph
AnnotationHub, BSgenome.Btaurus.UCSC.bosTau6.masked,
BiocStyle, Gviz, MultiAssayExperiment, TCGAutils,
curatedTCGAData, ensembldb, knitr, regioneR, rmarkdown
knitr, parallel, testthat, BiocStyle, rmarkdown,
AnnotationHub, LOLA
flowWorkspace (>= 3.33.1), flowCore, ncdfFlow, shiny,
testthat, devtools, flowWorkspaceData, ggplot2
testthat, knitr, rmarkdown, BiocStyle, Rtsne, viridis, rgl,
gplots
BiocGenerics, RUnit, knitr, RTCGA.mRNA, RTCGA.clinical
EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6),
hgu95av2.db, KEGG.db, karyoploteR, geneplotter, limma, lattice,
RUnit, org.Sc.sgd.db, GOstats, GO.db
BiocStyle, covr, knitr, rmarkdown, testthat, limma, ggplot2
CellMapperData, Biobase, HumanAffyData, ALL, BiocStyle,
ExperimentHub
BiocStyle, knitr, rmarkdown, testthat, limma
data.table, plyr, dplyr, tidyr, readr, RUnit, BiocGenerics,
AnnotationDbi, destiny, RUnit, scater, scran, knitr,
org.Mm.eg.db, rmarkdown
ChIPexoQualExample (>= 0.99.1), knitr (>= 1.10), BiocStyle,
gridExtra (>= 2.2), testthat
reactome.db, BSgenome.Ecoli.NCBI.20080805,
BSgenome.Hsapiens.UCSC.hg19, org.Ce.eg.db, org.Hs.eg.db,
BSgenome.Celegans.UCSC.ce10, BSgenome.Drerio.UCSC.danRer7,
EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v79,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, gplots, BiocStyle, knitr,
rmarkdown, testthat, trackViewer, motifStack, OrganismDbi
clusterProfiler, ggimage, ggplotify, ggupset, ReactomePA,
org.Hs.eg.db, knitr, rmarkdown, testthat, tibble
ChemmineR, BiocStyle, knitr, knitcitations, knitrBootstrap,
BiocManager
RSQLite, scatterplot3d, gplots, fmcsR, snow, RPostgreSQL,
BiocStyle, knitr, knitcitations, knitrBootstrap, ChemmineOB (>=
1.16.1), ChemmineDrugs, png,rmarkdown, BiocManager
argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat,
Rsamtools, GenomicInteractions, GenomicRanges, IRanges,
AnnotationHub
limma, genefilter, edgeR, car, Rmixmod, ggplot2 (>= 3.0.0),
gridExtra (>= 2.0.0), cowplot, BiocStyle, pamr, PoiClaClu,
parathyroidSE, knitr, htmltools, gtable, scales, e1071,
rmarkdown, IRanges, randomForest, robustbase, glmnet, class
knitr, rmarkdown, testthat, dplyr, readr, stringr, magrittr,
CluMSIDdata, metaMS, metaMSdata, xcms
yeastExpData, knitr, rmarkdown, devtools, testthat, biomaRt
knitr, rmarkdown, testthat, BiocStyle, ggplot2, plsgenomics,
covr
glpkAPI, testthat, knitr, rmarkdown, digest, R.cache,
ggplot2, plyr, igraph, methods, latex2exp,
rBayesianOptimization
testthat (>= 1.0.0), knitr, markdown, dendsort, Cairo, jpeg,
tiff, fastcluster, dendextend (>= 1.0.1), grImport, grImport2,
glue, GenomicRanges
BiocStyle, knitr, panelcn.mops,
BSgenome.Hsapiens.UCSC.hg19.masked, DNAcopy, testthat
knitr, kableExtra, BiocStyle, Biobase, roxygen2,
RColorBrewer, devtools, xtable
BiocStyle, gdata, GenomicFeatures, knitr, rmarkdown,
rtracklayer, sangerseqR, testthat, VariantAnnotation
rmarkdown, testthat, knitr, shiny, shinydashboard,
shinyWidgets, shinycssloaders, DT, ggthemes, ggplot2, pheatmap,
RColorBrewer, tibble, ggalluvial
testthat, flowWorkspaceData (>= 2.11.1), knitr, parallel
mgcv, testthat, BiocStyle, knitr, rmarkdown
BiocStyle (>= 1.8.0), knitr, rmarkdown, testthat
BiocStyle, AnnotationDbi, limma, pheatmap, rmarkdown,
statmod, testthat
BiocStyle, knitr, rmarkdown, testthat, edgeR, limma, EDASeq,
RUVSeq, RColorBrewer, statmod
testthat, knitr, rmarkdown, vsn, pheatmap, RColorBrewer, IHW,
apeglm, ashr, tximport, tximeta, tximportData, readr, pbapply,
airway, pasilla (>= 0.2.10)
knitr, rmarkdown, testthat, BiocStyle, IHW
GenomicFeatures (>= 1.13.29), pasilla (>= 0.2.22),
parathyroidSE, BiocStyle, knitr, rmarkdown
knitr, RUnit, BiocGenerics,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylationEPICanno.ilm10b4.hg19
AnnotationHub, knitr, rmarkdown, testthat,
BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19,
caret
prettydoc, clusterProfiler, knitr, org.Hs.eg.db, testthat
PasillaTranscriptExpr, GeuvadisTranscriptExpr, grid,
BiocStyle, knitr, testthat
knitr, rmarkdown, LOLA, Gviz, gplots, ggplot2, tidyr,
RColorBrewer, matrixStats
HDF5Array, genefilter, SummarizedExperiment, airway, pryr,
DelayedMatrixStats, knitr, BiocStyle, RUnit
testthat, knitr, rmarkdown, SeqArray, GDSArray
testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark,
profmem
Rtsne, testthat, knitr, rmarkdown, BiocStyle
testthat, beachmat, knitr, BiocStyle, rmarkdown
knitr, rmarkdown, BiocStyle, iSEE, scater,
SingleCellExperiment, SummarizedExperiment, plyr
BiocStyle, digest, knitr, rmarkdown, shiny
BiocStyle, knitr, yeastRNASeq, leeBamViews, edgeR,
KernSmooth, testthat
DESeq, GEOquery, limma, simpleaffy, affyPLM, RColorBrewer,
hgu133plus2cdf, hgu133plus2probe
BiocStyle, knitr, testthat, data.table, DT,
GenomicInteractions, webshot, R.utils, covr
AnnotationHub, RUnit, BiocGenerics, knitr, curl, httr
RUnit,BiocGenerics,knitr, curl, httr, shiny, shinythemes, DT
RUnit, BiocGenerics, knitr, DESeq2, pasilla, airway,
gridExtra, magrittr
testthat (>= 0.3), knitr, markdown, genefilter, RColorBrewer
ALL, BiocStyle, ReportingTools, airway, hgu95av2.db, knitr
roxygen2, GEOquery, BiocStyle, knitr, rmarkdown, Biobase,
testthat
dplyr, knitr, BiocStyle, rmarkdown, jsonlite
knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, dplyr,
kableExtra
caret, mlbench, SingleCellExperiment, knitr, rmarkdown,
testthat, BiocManager
shiny, DT, magrittr, visNetwork, knitr, BiocStyle, rmarkdown,
testthat, biomaRt, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi,
GOSemSim
RCurl, RDAVIDWebService, gage, topGO, GO.db, KEGG.db,
reactome.db, RUnit, BiocGenerics, org.Sc.sgd.db, knitr,
rmarkdown, AnnotationDbi, RGtk2, BiocManager
BiocStyle, testthat, knitr, rmarkdown, reutils
knitr, rmarkdown, EpiDISH, FlowSorted.CordBloodCombined.450k,
FlowSorted.Blood.450k(>= 1.0.1), FlowSorted.CordBlood.450k,
FlowSorted.CordBloodNorway.450k, testthat,
IlluminaHumanMethylation450kmanifest(>= 0.2.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1),
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
knitr, rmarkdown, testthat,
IlluminaHumanMethylation450kmanifest(>= 0.2.0),
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown,
testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle, org.Hs.eg.db, knitr, rmarkdown, testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene
org.Dm.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Dr.eg.db,
org.Ce.eg.db, org.At.tair.db, org.EcK12.eg.db, org.Bt.eg.db,
org.Cf.eg.db, org.Ag.eg.db, org.EcSakai.eg.db, org.Gg.eg.db,
org.Pt.eg.db, org.Pf.plasmo.db, org.Mmu.eg.db, org.Ss.eg.db,
org.Xl.eg.db, testthat, pryr, knitr, rmarkdown, prettydoc,
ggplot2, kableExtra, profvis, reshape2
CompQuadForm, poibin, SPAtest, survey, testthat, BiocStyle,
knitr, rmarkdown, GWASdata, ggplot2, GGally, RColorBrewer,
TxDb.Hsapiens.UCSC.hg19.knownGene
knitr, rmarkdown, foreach, doRNG, doParallel, Biobase,
SummarizedExperiment, testthat, methods
knitr, rmarkdown, BiocGenerics, testthat, covr
GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP144.GRCh37,
multtest, aod, rmeta
AnnotationHub, BiocManager, clusterProfiler, DOSE, knitr,
org.Hs.eg.db, prettydoc, testthat
knitr, rmarkdown, RTCGA.PANCAN12, BiocStyle, testthat
hgu95av2.db (>= 1.13.0), ALL, multtest, genefilter,
RColorBrewer, xtable, SparseM, GSEABase, geneplotter,
org.Hs.eg.db, RUnit, BiocGenerics
ExperimentHub (>= 0.99.6), knitr, BiocStyle
hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools,
testthat, BiocStyle, knitr
limma, RColorBrewer, genefilter, edgeR, snow, parallel,
GSVAdata
knitr, RUnit, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
ncdf4, GWASdata, BiocGenerics, RUnit, Biostrings,
GenomicRanges, IRanges, SNPRelate, snpStats, S4Vectors,
VariantAnnotation
BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, RMySQL,
roxygen2, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene,
rmarkdown, vdiffr, formatR, TxDb.Hsapiens.UCSC.hg38.knownGene,
BSgenome.Hsapiens.UCSC.hg38
assertthat, BiocStyle, devtools, knitr, rmarkdown, testthat
RUnit, BiocGenerics, RBGL, knitr, simpIntLists, shiny,
STRINGdb, BiocStyle, magick
BiocStyle, chipseq (>= 1.21.2), LSD (>= 3.0.0), genefilter
(>= 1.54.2), ggplot2 (>= 2.1.0), testthat, knitr, rmarkdown
ShortRead, rtracklayer, BSgenome, GenomicFeatures,
RNAseqData.HNRNPC.bam.chr14, pasillaBamSubset,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
BSgenome.Dmelanogaster.UCSC.dm3, BSgenome.Hsapiens.UCSC.hg19,
DESeq2, edgeR, RUnit, BiocStyle
BiocStyle, knitr, rmarkdown, DT, testthat, listviewer,
ggplot2, GenomicAlignments, Rsamtools
RMariaDB, org.Mm.eg.db, org.Hs.eg.db, BSgenome,
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce2, BSgenome.Dmelanogaster.UCSC.dm3 (>=
1.3.17), mirbase.db, FDb.UCSC.tRNAs,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1),
TxDb.Mmusculus.UCSC.mm10.knownGene (>= 3.4.7),
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,
TxDb.Hsapiens.UCSC.hg38.knownGene (>= 3.4.6),
SNPlocs.Hsapiens.dbSNP144.GRCh38, Rsamtools, pasillaBamSubset
(>= 0.0.5), GenomicAlignments (>= 1.15.7), ensembldb, RUnit,
BiocStyle, knitr
BiocStyle, RUnit, genefilter, deepSNV,
RNAseqData.HNRNPC.bam.chr14, Biostrings, Homo.sapiens
Matrix, Biobase, AnnotationDbi, annotate, Biostrings (>=
2.25.3), SummarizedExperiment (>= 0.1.5), Rsamtools (>=
1.13.53), GenomicAlignments, rtracklayer, BSgenome,
GenomicFeatures, Gviz, VariantAnnotation, AnnotationHub,
DESeq2, DEXSeq, edgeR, KEGGgraph, RNAseqData.HNRNPC.bam.chr14,
pasillaBamSubset, KEGG.db, hgu95av2.db, hgu95av2probe,
BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm10,
TxDb.Athaliana.BioMart.plantsmart22,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, RUnit, digest, knitr,
BiocStyle
BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19,
phastCons100way.UCSC.hg19, MafDb.1Kgenomes.phase1.hs37d5,
SNPlocs.Hsapiens.dbSNP144.GRCh37, VariantAnnotation,
TxDb.Hsapiens.UCSC.hg19.knownGene, gwascat, RColorBrewer
knitr, rmarkdown, BiocStyle, knitcitations, sessioninfo,
testthat (>= 2.1.0), glue, derfinderPlot, AnnotationHubData,
RefManageR, GenomicRanges
limma, rtracklayer, GenomicRanges, Rsamtools,
VariantAnnotation, tools, BiocStyle, knitr, testthat
roxygen2, knitr, rmarkdown, testthat, BiocStyle
BiocStyle, IRanges, GenomicRanges, SummarizedExperiment,
DESeq2, limma, testthat, knitr, rmarkdown, pryr
GO.db, KEGG.db, golubEsets, hu6800.db, vsn, Rgraphviz
BSgenome.Hsapiens.UCSC.hg19, BiocStyle, knitr, rmarkdown,
testthat
knitr, rmarkdown, BiocStyle, scran (>= 1.11.4), BiocSingular,
scater, igraph, iSEE, testthat
BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0)
BiocStyle, knitr, rmarkdown, Rtsne, umap, ggplot2, FlowSOM,
mclust, diffcyt
h5vcData, SummarizedExperiment (>= 1.15.1), GenomicRanges,
ExperimentHub, TENxBrainData, BiocParallel, GenomicFeatures,
BiocStyle
parallel, knitr, gdsfmt (>= 1.2.2), SNPRelate (>= 1.1.6),
ggplot2, reshape2
Biobase, BiocCheck, BiocManager, BiocStyle, circlize, covr,
cowplot, curatedMetagenomicData, dendextend, devtools, ggplot2,
gridExtra, haven, phyloseq, rmarkdown, roxygen2, stats,
testthat
Biobase, BiocCheck, BiocManager, BiocStyle, cowplot,
devtools, ggplot2, gridExtra, haven, rmarkdown, roxygen2,
stats, testthat, tibble, UpSetR
HarmanData, BiocGenerics, BiocStyle, knitr, rmarkdown, RUnit,
RColorBrewer, bladderbatch, limma, minfi, lumi, msmsEDA,
affydata, minfiData, sva
AnnotationHub, knitr, rmarkdown, igraph, survival, ANF,
stats, testthat
knitr, testthat (>= 1.0.0), ComplexHeatmap (>= 1.99.0),
markdown, RColorBrewer, RCurl, GetoptLong
knitr, BiocStyle, beeswarm, tximportData, DT, tximport,
dplyr, magrittr, BiocFileCache, testthat
ggplot2, dplyr, gridExtra, scales, DESeq2, airway, testthat,
Matrix, BiocStyle, knitr, rmarkdown, devtools
testthat, RColorBrewer, wesanderson, scales, gridExtra,
BiocStyle, knitr, rmarkdown, airway, pasilla, DESeq, locfdr,
tidyr, ggbio, latex2exp
BiocStyle, knitr, rmarkdown, gridExtra, testthat,
minionSummaryData
RUnit, BiocGenerics, msdata, mtbls2, faahKO, knitr
XVector, GenomicRanges, Rsamtools, GenomicAlignments,
GenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset,
RUnit, BiocStyle
BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0), ggplot2,
ggforce, gridExtra, ggrepel
RUnit, BiocGenerics, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm10, org.Hs.eg.db, org.Mm.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, rtracklayer, knitr
BiocStyle, Gviz, knitr, rmarkdown, GeneAnswers, GO.db,
org.Hs.eg.db
RDAVIDWebService, gProfileR, topGO, KEGGprofile,
org.Dm.eg.db, rmarkdown, testthat
knitr, BiocStyle, DESeq2, DEXSeq, edgeR, JunctionSeq
Rgraphviz, RBGL, testthat, RColorBrewer, KEGG.db,
org.Hs.eg.db, hgu133plus2.db, SPIA
parallel, testthat, knitr, BiocStyle, rmarkdown
MASS (>= 7.3.0), knitr, rmarkdown, BiocStyle
BiocStyle, knitr, rmarkdown, gplots, RColorBrewer, moments,
testthat
knitr, rmarkdown, BiocStyle, Biobase, devtools, xtable,
gridExtra, RColorBrewer, seqLogo, ggseqlogo
ROCR, knitr, M3DExampleData, scater, SingleCellExperiment,
monocle, Seurat, Biobase
knitr, rmarkdown, testthat, lme4(>= 1.0), blme, roxygen2(>
6.0.0), numDeriv, car, gdata, lattice, GGally, GSEABase, NMF,
TxDb.Hsapiens.UCSC.hg19.knownGene, rsvd, limma, RColorBrewer,
BiocStyle, scater, DelayedArray, Matrix, HDF5Array
gplots, knitr, rmarkdown, BiocStyle, gProfileR, MASS, dplyr,
pander, devtools, testthat, GSVA
testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19,
IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData,
BiocStyle, rmarkdown, brgedata
breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG,
breastCancerUNT, breastCancerUPP, breastCancerVDX, mGSZ,
MIGSAdata
class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL,
hgu95av2.db, som, hu6800.db, lattice, caret (>= 5.07),
golubEsets, ada, keggorthology, kernlab, mboost, party
knitr, testthat, BiocStyle, VennDiagram, pamr
testthat, mockery, roxygen2, knitr, rmarkdown, BiocStyle,
MMAPPR2data
knitr, rmarkdown, BiocStyle, roxygen2, seqinr, readr
MMDiffBamSubset, MotifDb, knitr, BiocStyle,
BSgenome.Mmusculus.UCSC.mm9
testthat, BiocStyle, knitr, rmarkdown, magrittr, vegan,
phyloseq, curatedMetagenomicData, genefilter
testthat, pryr, gridExtra, microbenchmark, zoo, knitr (>=
1.1.0), rols, Rdisop, pRoloc, pRolocdata (>= 1.7.1), msdata (>=
0.19.3), roxygen2, rgl, rpx, AnnotationHub, BiocStyle (>=
2.5.19), rmarkdown, imputeLCMD, norm, gplots, shiny, magrittr,
SummarizedExperiment
MTseekerData, BiocStyle, rmarkdown, ggthemes, ggplot2,
pkgdown, knitr, rsvg
RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown
BiocParallel, BiocStyle, knitr, minfiData, minfiDataEPIC
BiocStyle, knitr, MethylAidData, minfiData, minfiDataEPIC,
RUnit
BiocStyle, doParallel, testthat, knitr, rmarkdown
BiocStyle, knitr, rmarkdown, testthat, usethis
BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2,
png
BiocStyle, testthat, knitr, rmarkdown, R.rsp, HDF5Array,
RaggedExperiment, UpSetR, survival, survminer
brgedata, minfi, minfiData, knitr, rmarkdown, testthat,
omicade4, iClusterPlus, GEOquery, MultiAssayExperiment,
BiocStyle, RaggedExperiment
BSgenome (>= 1.40.0), BSgenome.Hsapiens.1000genomes.hs37d5
(>= 0.99.1), BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.0), BiocStyle
(>= 2.0.3), TxDb.Hsapiens.UCSC.hg19.knownGene (>= 3.2.2),
biomaRt (>= 2.28.0), gridExtra (>= 2.2.1), rtracklayer (>=
1.32.2), testthat
RUnit, BiocStyle, knitr, BSgenome.Mmusculus.UCSC.mm10,
testthat, BiocManager
roxygen2 (>= 4.0.1), testthat, BiocStyle, knitr, rmarkdown
BiocStyle (>= 2.2.0), DT, ggplot2, knitr, rmarkdown,
testthat, specL, lattice, scales
rBiopaxParser (>= 2.1), RCurl, graph, knitr, rmarkdown,
BiocStyle
knitr, testthat, rmarkdown, roxygen2, hexbin, BiocStyle
airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2,
gridExtra, knitr, Matrix, rmarkdown, scales, testthat
testthat, rmarkdown, knitr, BiocStyle, BSgenome,
BSgenome.Hsapiens.UCSC.hg19
testthat, knitr, rmarkdown, BiocStyle,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, RMariaDB,
AnnotationDbi, beeswarm, covr
knitr, rmarkdown, BiocStyle, testthat, ggplot2, gridExtra,
grid, reshape2, scales
knitr, rmarkdown, testthat, devtools, BiocManager
tidyr, dnet, gprofiler2, BiocStyle, testthat
BiocStyle, rmarkdown, htmltools, org.Hs.eg.db, gplots,
GenomicRanges, kableExtra
BiocStyle, knitr, Oncotree, testthat (>= 1.0.0), rmarkdown,
bookdown, pander
org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene,
org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.ensGene, testthat,
knitr, rmarkdown, BiocStyle, ggplot2
Homo.sapiens, Rattus.norvegicus, BSgenome.Hsapiens.UCSC.hg19,
AnnotationHub, FDb.UCSC.tRNAs, rtracklayer, biomaRt, RUnit,
RMariaDB
BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb
testthat, scran, BiocGenerics, knitr, Biobase, GEOquery,
biomaRt, ggplotify, beachmat
RMariaDB, BSgenome.Hsapiens.UCSC.hg19, RUnit, BiocGenerics,
BiocStyle, knitr, R.utils
quantsmooth, qvalue, limma, caTools, affy, PREDAsampledata
BiocStyle, knitr, rmarkdown, testthat, digest
knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle
testthat (>= 0.8), ggplot2, BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationHub, knitr,
rmarkdown, BiocStyle, EnsDb.Hsapiens.v86 (>= 2.0.0)
knitr, markdown, rmarkdown, BiocStyle, PepsNMRData
foreach, doParallel, BiocStyle, knitr, rmarkdown, png,
GGally, gridExtra, ExpressionAtlas, ggforce, fgsea, pathview,
tidyr, dplyr
org.Hs.eg.db (>= 3.7.0), org.Mm.eg.db (>= 3.7.0), biomaRt (>=
2.30.0), knitr, BiocStyle, AnnotationDbi, energy
BiocStyle, knitr, rmarkdown, colr, metap, repmis
gplots, RColorBrewer, cluster, vegan, clustsig
BiocParallel, BiocStyle, PSCBS,
TxDb.Hsapiens.UCSC.hg19.knownGene, copynumber, covr, knitr,
optparse, org.Hs.eg.db, rmarkdown, testthat
QUBICdata, qgraph, fields, knitr, rmarkdown
Gviz, BiocStyle, knitr, rmarkdown, covr, testthat
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
BSgenome.Mmusculus.UCSC.mm9, BSgenome.Celegans.UCSC.ce10,
BSgenome.Dmelanogaster.UCSC.dm3, org.Mm.eg.db, org.Ce.eg.db,
org.Dm.eg.db, testthat, covr
RUnit, BiocStyle, RefNet, knitr, rmarkdown
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylationEPICanno.ilm10b2.hg19,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38,
knitr, rmarkdown, minfiDataEPIC
RUnit, hgu95av2.db, AnnotationDbi, knitr, formatR, Rserve
RUnit, BiocStyle, BiocGenerics, xtable, sna
BiocStyle, knitr, rmarkdown, testthat, devtools
BiocStyle, knitr, rmarkdown, nucleoSim, RUnit
gplots,RMassBankData, xcms (>= 1.37.1), CAMERA, RUnit,
enviPat
BiocStyle, knitr, rmarkdown, testthat, rtracklayer,
Biostrings, RNAmodR.Data
knitr, rmarkdown, BiocStyle, GenomicRanges, sessioninfo
BiocStyle, knitr, rmarkdown, testthat, RNAmodR.Data,
RNAmodR.AlkAnilineSeq, GenomicFeatures, Rsamtools, rtracklayer,
keras
BiocStyle, knitr, rmarkdown, testthat, rtracklayer,
RNAmodR.Data
BiocStyle, knitr, rmarkdown, testthat, RNAmodR.Data
BiocStyle, Homo.sapiens, knitr, readr, rmarkdown
devtools, testthat, pander, Biobase, GenomicRanges, IRanges,
S4Vectors, RTCGA.rnaseq, RTCGA.clinical, RTCGA.mutations,
RTCGA.RPPA, RTCGA.mRNA, RTCGA.miRNASeq, RTCGA.methylation,
RTCGA.CNV, RTCGA.PANCAN12, magrittr, tidyr
RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
Fletcher2013b, knitr, rmarkdown, BiocStyle, RUnit,
BiocGenerics
BiocStyle, knitr, RColorBrewer, zebrafishRNASeq, DESeq2
knitr, testthat, rmarkdown, BiocStyle, VariantAnnotation
Biobase, BiocStyle, BiocParallel, doParallel, DT, foreach,
igraph, knitr, RcisTarget.hg19.motifDBs.cisbpOnly.500bp,
rmarkdown, testthat, visNetwork, arrow
testthat, knitr, rmarkdown, ReactomeGSA.data, Biobase,
devtools
BiocStyle, clusterProfiler, knitr, org.Hs.eg.db, prettydoc,
testthat
RUnit, BiocGenerics, knitr, DESeq2, airway, magrittr,
Biobase, GEOquery, biomaRt, survminer
RUnit, ALL, hgu95av2.db, org.Mm.eg.db, shiny, pasilla,
org.Sc.sgd.db
AnnotationDbi, rpx, DT, knitr, rmarkdown, BiocStyle, mzR,
xcms, msdata, isobar, MALDIquant (>= 1.12), MALDIquantForeign,
readBrukerFlexData, rTANDEM, synapter, synapterdata, IPPD,
Rdisop, OrgMassSpecR, SummarizedExperiment, BRAIN, rols, hpar,
GO.db, org.Hs.eg.db, e1071, biomaRt, RColorBrewer, ggplot2,
reshape2, xtable, lattice, mzID, pRoloc, pRolocdata, MSGFplus,
MSnID, msmsTests, msmsEDA, DEP, corrplot, beanplot, Heatplus,
gplots, VennDiagram, protViz, genefilter, plotly, gridExtra,
dplyr, lubridate
knitr, BiocStyle, TxDb.Hsapiens.UCSC.hg19.knownGene,
BSgenome.Hsapiens.UCSC.hg19, testthat, SummarizedExperiment
Category, GOstats, Gviz,
IlluminaHumanMethylation450kmanifest, RPMM, RefFreeEWAS,
RnBeads.hg19, XML, annotate, biomaRt, foreach, doParallel,
ggbio, isva, mclust, mgcv, minfi, nlme, org.Hs.eg.db,
org.Mm.eg.db, org.Rn.eg.db, quadprog, rtracklayer, qvalue, sva,
wateRmelon, wordcloud, argparse, glmnet, GLAD,
IlluminaHumanMethylation450kanno.ilmn12.hg19, scales,
missMethyl, impute, shiny, shinyjs, plotrix, hexbin, RUnit,
MethylSeekR
GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, KEGG.db,
TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,
BSgenome.Hsapiens.UCSC.hg19, RUnit, BiocStyle
IRanges, GenomicRanges, SummarizedExperiment, Matrix,
DelayedArray, ShortRead, graph, data.table, RUnit, BiocStyle
parallel, crayon, RUnit, knitr, BiocGenerics, SNPRelate
BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, knitr, rmarkdown
BiocStyle, optparse, testthat, knitr, rmarkdown
BiocGenerics, BiocStyle, testthat, knitr, igraph
parallel, Matrix, RUnit, knitr, MASS, BiocGenerics
BiocStyle, knitr, pryr, rmarkdown, SNPhoodData, corrplot
testthat, knitr, rmarkdown, visNetwork, ggplot2, ggrepel,
gridExtra, digest, doParallel, bigmemory
RMySQL, bigrquery, testthat, knitr, rmarkdown, DelayedArray
Biobase, BiocGenerics, BiocParallel, RUnit, Rcpp, SNPRelate,
digest, crayon, knitr, Rsamtools, VariantAnnotation
testthat, parallel, knitr, rmarkdown, BiocStyle
IRanges, BSgenome.Hsapiens.UCSC.hg19, BiocStyle, knitr,
rmarkdown
DESeq2, GenomicRanges, GenomicFeatures, genefilter, statmod,
gdata, RColorBrewer, ggplot2, gplots, cluster, clue, grid,
gridExtra, ggbio, Gviz, geneplotter, matrixStats, pheatmap,
BiocStyle, knitr
testthat, BiocStyle, knitr, rmarkdown, scRNAseq, Rtsne,
Matrix
testthat, knitr, rmarkdown, BiocStyle, beachmat,
SingleCellExperiment, scater, scRNAseq, scran, BiocGenerics,
ggplot2, pheatmap, grDevices, viridis, AnnotationHub,
AnnotationDbi
testthat, knitr, parallel,
BSgenome.Hsapiens.1000genomes.hs37d5, SomaticCancerAlterations,
ggdendro, fastICA, sva
BiocCheck, BiocManager, BiocStyle, knitr, rmarkdown,
microbenchmark, testthat, covr
BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2
BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2,
qgraph, png, grid
testthat, knitr, rmarkdown, tRNAscanImport, BiocStyle
BSgenome.Hsapiens.UCSC.hg19, ggplot2, devtools, testthat,
roxygen2, covr, knitr, plyranges, ggbio, biovizBase, circlize,
tictoc, GenomeInfoDb, IRanges, S4Vectors, SummarizedExperiment
iCOBRA, BiocStyle, knitr, magrittr, IHW, qvalue, testthat,
DESeq2, edgeR, limma, tximport, readr, scRNAseq, splatter,
scater, rnaseqcomp, biomaRt
annotate, AnnotationDbi, hgu95av2.db, GenomicFeatures,
TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle, knitr, rmarkdown,
digest, jsonlite, rhdf5, HDF5Array (>= 1.7.5), airway, RUnit,
testthat
BiocManager, knitr, rmarkdown, testthat, devtools, prettydoc,
glue
BiocStyle, knitr, readr, readxl, dplyr, caret, randomForest,
doMC, e1071, DT
testthat, dplyr, knitr, roxygen2, devtools, rvest, xml2,
BiocStyle, animation, pander
jpeg, png, BiocStyle, rmarkdown, devtools, maftools,
parmigene, c3net, minet, dnet, Biobase, affy, testthat, sesame,
pathview, clusterProfiler, ComplexHeatmap, circlize,
ConsensusClusterPlus, igraph, TCGAbiolinksGUI.data, supraHex
BiocFileCache, BiocStyle, curatedTCGAData, ComplexHeatmap,
devtools, dplyr, IlluminaHumanMethylation450kanno.ilmn12.hg19,
impute, knitr, magrittr, mirbase.db, org.Hs.eg.db,
RColorBrewer, readr, RTCGAToolbox (>= 2.7.5), rtracklayer,
R.utils, testthat, TxDb.Hsapiens.UCSC.hg18.knownGene,
TxDb.Hsapiens.UCSC.hg19.knownGene
knitr, BiocStyle, snow, BiocFileCache, BiocParallel,
data.table
knitr, BiocStyle, snow, BiocFileCache, BiocParallel
knitr, rmarkdown, S4Vectors, plotly, scales, tidyr, ggplot2,
GSEABase, DESeq2, BiocGenerics, ggrepel, rcompanion,
TxDb.Hsapiens.UCSC.hg19.knownGene
knitr, data.table, testthat, AnnotationDbi, AnnotationFilter,
Biobase, GenomicFeatures, GenomicRanges, Gviz, IRanges,
Rsamtools, S4Vectors, org.Hs.eg.db, EnsDb.Hsapiens.v75,
BiocParallel, BiocStyle, GO.db, GenomicFiles, GenomeInfoDb,
SummarizedExperiment, UpSetR, ggplot2, png, gwascat, MotifDb,
motifStack, RColorBrewer
BiocStyle, knitr, rmarkdown, csSAM, gplots, matrixStats,
Matrix
BiocGenerics, BiocStyle, testthat, knitr, rWikiPathways
EnsDb.Hsapiens.v75 (>= 0.99.7), shiny (>= 0.13.2.9005), DT
(>= 0.1.67), rtracklayer, BiocStyle (>= 2.5.19), knitr (>=
1.12), rmarkdown, testthat, covr, pander
knitr, rmarkdown, BiocStyle, SingleCellExperiment, scran,
scater, iSEE, testthat
Biobase, BiocFileCache (>= 1.5.8), circlize, ComplexHeatmap,
GO.db, grDevices, grid, knitr, org.Mm.eg.db, org.Hs.eg.db,
MASS, RColorBrewer, rmarkdown, UpSetR,
GenomicFeatures, shiny, BiocManager, rmarkdown, testthat
BiocStyle, airway, knitr, rmarkdown, DESeq2, DESeq, edgeR,
plotrix, breastCancerVDX, EnrichmentBrowser
ggtree, BiocStyle, knitr, rmarkdown, testthat
knitr, GenomicFiles, EnsDb.Hsapiens.v75, testthat, shiny,
biovizBase (>= 1.27.2), Gviz, AnnotationFilter, ensembldb,
ontoProc, rjson, graph, TFutils (>= 1.5.4)
BSgenome.Hsapiens.UCSC.hg38, BiocStyle, httpuv, knitr,
org.Hs.eg.db, rmarkdown, TxDb.Hsapiens.UCSC.hg38.knownGene
testthat, knitr, rmarkdown, BiocGenerics, RUnit
SeqArray, BiocStyle, BiocManager, testthat, knitr, rmarkdown
RUnit, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132,
SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats,
ggplot2, BiocStyle
RUnit, BiocStyle, org.Hs.eg.db,
BSgenome.Hsapiens.1000genomes.hs37d5,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP144.GRCh37,
MafDb.1Kgenomes.phase1.hs37d5, phastCons100way.UCSC.hg19,
PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP137
VariantTools (>= 1.3.4), gmapR (>= 1.3.3), BiocStyle
RUnit, LungCancerLines (>= 0.0.6), RBGL, graph, gmapR (>=
1.21.3)
htmltools, org.Mm.eg.db, limma, Rgraphviz, BiocStyle, knitr,
rmarkdown, corrplot, remotes, BiocManager
knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR
knitr, DESeq, rmarkdown, BiocStyle, testthat
BSgenome.Hsapiens.UCSC.hg19, testthat, BiocStyle, knitr,
rmarkdown
Matrix, testthat, rmarkdown, knitr, BiocStyle, SuperLearner,
earth, gam, nnls, airway
R.oo (>= 1.22.0), R.utils (>= 2.7.0), AffymetrixDataTestFiles
affydata, hgfocuscdf, BiocStyle, knitr, hgu95av2.db, rgl,
rmarkdown
knitr, testthat, alpineData, rtracklayer, ensembldb,
BSgenome.Hsapiens.NCBI.GRCh38, RColorBrewer
hgu95av2.db, genefilter, Biostrings (>= 2.25.10), IRanges,
rae230a.db, rae230aprobe, tkWidgets, GO.db, org.Hs.eg.db,
org.Mm.eg.db, hom.Hs.inp.db, humanCHRLOC, Rgraphviz, RUnit,
BiocStyle, devtools, knitr, org.Dm.eg.db, org.Gg.eg.db,
org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, rmarkdown, roxygen2,
testthat, TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Dmelanogaster.UCSC.dm6.ensGene,
TxDb.Ggallus.UCSC.galGal5.refGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm9.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Rnorvegicus.UCSC.rn4.ensGene,
TxDb.Rnorvegicus.UCSC.rn5.refGene,
TxDb.Rnorvegicus.UCSC.rn6.refGene
DESeq2, airway, knitr, rmarkdown, testthat
BiocStyle, knitr, rmarkdown, testthat, roxygen2
testthat, BiocStyle, knitr, beachmat, scran, scRNAseq
knitr, rmarkdown, BiocStyle, devtools, testthat
testthat, BiocStyle, knitr, rmarkdown, devtools
knitr, BiocStyle, testthat, SummarizedBenchmark, dplyr,
ggplot2, rlang
BiocGenerics, BiocStyle, minfiData, parallel,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylationEPICanno.ilm10b2.hg19, bumphunter
BiocStyle, rmarkdown, knitr, testthat (>= 0.10.0)
BiocStyle, RCurl, biomaRt, cellHTS2, knitr, knitcitations,
knitrBootstrap, testthat, ggplot2, rmarkdown
limma, DESeq2, airway, ggplot2, plyr, GenomicRanges,
testthat, magrittr, edgeR, qvalue, knitr, data.table, MSnbase,
SummarizedExperiment
annotate, BiocStyle, knitr, rmarkdown, testthat
BioMark, BiocGenerics, BiocStyle, golubEsets, hu6800.db,
knitr, omicade4, rmarkdown, testthat
testthat, knitr, rmarkdown, BiocStyle, earth, glmnet,
randomForest, SuperLearner, Matrix, DBI, biotmleData (>= 1.1.1)
BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer,
EnsDb.Hsapiens.v75, RUnit
DSS, covr, knitr, rlang, scmeth, pkgdown, roxygen2, testthat,
QDNAseq.hg19, QDNAseq.mm10
testthat (>= 2.1.0), knitr, BiocStyle, rmarkdown, curl
xtable, blimaTestingData, BiocStyle, illuminaHumanv4.db,
lumi, knitr
BiocStyle, knitcitations, knitr, rmarkdown, sessioninfo,
testthat (>= 2.1.0)
testthat, bsseqData, BiocStyle, rmarkdown, knitr, Matrix,
doParallel, rtracklayer, BSgenome.Hsapiens.UCSC.hg38, beachmat
(>= 1.5.2), BatchJobs
knitr, GO.db, KEGG.db, estrogen, org.Hs.eg.db, hgu95av2.db,
limma, affy, genefilter
crossmeta, knitr, rmarkdown, testthat, lydata
limma, parallel, knitr, rmarkdown, ExperimentHub, testthat
testthat, knitr, roxygen2, rmarkdown, corrplot, Matrix,
biomaRt, covr, M3DExampleData, BiocManager, BiocStyle
BiocStyle, knitr, HSMMSingleCell, biomaRt, org.Hs.eg.db,
Biobase, tools
BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation
BiocStyle, caret, knitr, testthat, rmarkdown
parallel, GGtools, TxDb.Hsapiens.UCSC.hg19.knownGene,
org.Hs.eg.db, illuminaHumanv1.db
testthat, roxygen2, devtools, knitr, lintr
BiocStyle, devtools, knitr, rmarkdown, roxygen2, testthat,
GO.db, org.Dm.eg.db, org.Dr.eg.db, org.Hs.eg.db, org.Mm.eg.db,
org.Rn.eg.db, TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Dmelanogaster.UCSC.dm6.ensGene,
TxDb.Drerio.UCSC.danRer10.refGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm9.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Rnorvegicus.UCSC.rn4.ensGene,
TxDb.Rnorvegicus.UCSC.rn5.refGene,
TxDb.Rnorvegicus.UCSC.rn6.refGene
BiocStyle, devtools, knitr, rmarkdown, roxygen2, testthat
JASPAR2016, BSgenome.Hsapiens.UCSC.hg19, readr, testthat,
knitr, rmarkdown, pheatmap, motifmatchr
BiocStyle, DescTools (>= 0.99.19), devtools (>= 1.13.3),
GenomeInfoDb (>= 1.16.0), knitr, rmarkdown, mclust (>= 5.3),
testthat
AnnotationDbi (>= 1.38.2), knitr, rmarkdown, rtracklayer (>=
1.36.6), testthat, vdiffr (>= 0.2.3), covr
testthat, knitr, roxygen2, rmarkdown, citr, devtools,
gridExtra, ggpubr, VennDiagram, BSgenome.Mmusculus.UCSC.mm9,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
testthat (>= 0.8), knitr, BiocStyle (>= 0.0.14), rmarkdown,
BRAIN, UniProt.ws (>= 2.1.4)
RUnit, BiocGenerics, graphite, ALL, hgu95av2.db, MASS,
BiocStyle
BiocStyle, knitr, testthat, scRNAseq, MAST, Rtsne, scran,
igraph
AnnotationHub, dplyr, KEGG.db, knitr, org.Hs.eg.db,
prettydoc, ReactomePA, testthat
genefilter, mvtnorm, testthat (>= 0.3), data.tree,
dendextend, samr, pamr, kohonen, NMF, WGCNA, Rtsne, umap,
clusterProfiler, ReactomePA, DOSE, AnnotationDbi, gplots,
hu6800.db
BiocStyle, EBSeq, DESeq, DESeq2 (>= 1.1.31), baySeq (>=
2.2.0), genefilter, NOISeq, TCC, NBPSeq (>= 0.3.0)
BiocStyle, ggplot2, knitr, rmarkdown, RUnit
BiocStyle, knitr, rmarkdown, minfiData, RCurl
knitr, rmarkdown, lydata, org.Hs.eg.db, testthat, ccdata
org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.knownGene, testthat,
GenomicAlignments, knitr, BiocStyle, rmarkdown, BiocManager
BiocStyle, dplyr, DT, GEOquery, knitr, pander, rmarkdown,
testthat
knitr, rmarkdown, GenomicFeatures, ChIPseeker, AnnotationDbi,
S4Vectors, DESeq2, fastqcr, devtools, testthat, readr, dplyr,
tidyr, ggplot2
knitr, rmarkdown, DESeq2, fastqcr, devtools, testthat, readr,
dplyr, tidyr, ggplot2, S4Vectors
ape, covr, BiocCheck, BiocManager, BiocParallel, BiocStyle,
devtools, ggplot2, knitr, metagenomeSeq, phyloseq, readr,
RISmed, rmarkdown, roxygen2, testthat
BiocStyle, knitr, readr, rmarkdown, TCGAutils, testthat
ncdfFlow, testthat, knitr, edgeR, limma, glmnet, BiocStyle,
flowStats
XML, BiocStyle, knitr, rmarkdown, testthat
EBcoexpress, testthat, EBarrays, GeneNet, COSINE, mclust,
minqa, SummarizedExperiment, Biobase, knitr, rmarkdown,
BiocStyle, edgeR
knitr, rmarkdown, BiocStyle, viridis, gridExtra, ggplot2,
readr, tibble, stringr, tidyr
sessioninfo, knitcitations (>= 1.0.1), knitr (>= 1.6),
knitrBootstrap (>= 0.9.0), RefManageR, rmarkdown (>= 0.3.3),
sessioninfo, knitcitations (>= 1.0.1), knitr (>= 1.6),
BiocStyle (>= 2.5.19), rmarkdown (>= 0.3.3), testthat
biovizBase (>= 1.27.2), bumphunter (>= 1.7.6), derfinderData
(>= 0.99.0), sessioninfo, knitcitations (>= 1.0.1), knitr (>=
1.6), BiocStyle (>= 2.5.19), org.Hs.eg.db, RefManageR,
rmarkdown (>= 0.3.3), testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle (>= 2.5.19), biovizBase, sessioninfo, derfinderData
(>= 0.99.0), derfinderPlot, DESeq2, ggplot2, knitcitations (>=
1.0.1), knitr (>= 1.6), limma, RefManageR, rmarkdown (>=
0.3.3), testthat (>= 2.1.0), TxDb.Hsapiens.UCSC.hg19.knownGene
nbconvertR (>= 1.3.2), igraph, testthat, FNN, tidyr
BiocStyle, knitr, rmarkdown, testthat, HDCytoData, CATALYST
DESeq2, diffloopdata, ggrepel, knitr, rmarkdown, testthat
testthat, knitr, rmarkdown, ggplot2, ggsci, igraphdata,
BiocStyle, reshape2
BiocStyle, knitr, rmarkdown, curatedOvarianData, ROCR, pROC
(>= 1.15.0), RUnit, simulatorZ, proxy
covr, testthat, knitr, rmarkdown, BiocStyle
BiocStyle (>= 2.12.0), BSgenome (>= 1.52.0),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl, knitr,
rmarkdown, RUnit (>= 0.4.32)
AnnotationDbi, jsonlite, org.Hs.eg.db, readr, rhdf5, splines
clusterProfiler, dplyr, ggupset, knitr, org.Hs.eg.db,
prettydoc, tibble
BiocStyle, knitr, EnsDb.Hsapiens.v86 (>= 0.99.8), testthat,
BSgenome.Hsapiens.NCBI.GRCh38, ggbio (>= 1.24.0), Gviz (>=
1.20.0), magrittr, AnnotationHub
knitr, RUnit, BiocGenerics, STRINGdb, devtools, rmarkdown,
GOSemSim, AnnotationHub, org.Sc.sgd.db
knitr, clusterProfiler, ggfortify, org.Hs.eg.db, rmarkdown
testthat, roxygen2, knitr, Biobase, GenomicRanges, S4Vectors,
IRanges, SummarizedExperiment, antiProfilesData,
hgu133plus2.db, Mus.musculus, BiocStyle, Homo.sapiens, shiny,
minfi, Rsamtools, rtracklayer, RColorBrewer, magrittr,
AnnotationHub
testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus,
TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown,
BiocStyle, EnsDb.Mmusculus.v79, AnnotationHub, rtracklayer,
utils, RMySQL, DBI
testthat, knitr, rmarkdown, OrganismDbi (>= 1.13.9),
Mus.musculus, Biobase, BiocStyle
testthat, roxygen2, knitr, Biobase, SummarizedExperiment,
antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle
rmarkdown, BiocStyle, knitr, GO.db, png, DT, doParallel
BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, DiagrammeRsvg,
testthat, webshot
ggplot2, ggvis, rbokeh, ggrepel, knitr, rmarkdown, ALL,
hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment
BiocStyle, knitr, rmarkdown, kableExtra, magrittr
testthat (>= 2.1.0), devtools, BiocManager, TENxPBMCData,
scater, gridExtra, scran, Seurat, knitr
testthat, knitr, rmarkdown, reactome.db, AnnotationDbi,
parallel, org.Mm.eg.db, limma, GEOquery
testthat, knitr, rmarkdown, macrophage, tximeta,
org.Hs.eg.db, samr, DESeq2, apeglm
testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown,
openCyto
Rgraphviz, flowViz, flowStats (>= 3.43.4), testthat,
flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto,
gridExtra
testthat, knitr, rmarkdown, BiocStyle, flowVS, vulcan,
DepecheR
BiocGenerics, knitr, RColorBrewer, rmarkdown, testthat,
BiocStyle
knitr, rmarkdown, flowViz, ggplot2, BiocGenerics, moments,
stats
testthat, flowWorkspaceData, knitr, ggcyto, parallel, CytoML,
openCyto
edgeR, knitr, grid, AnnotationDbi, org.Mm.eg.db,
org.Hs.eg.db, RUnit, BiocGenerics
geuvStore2, knitr, rmarkdown, BiocStyle, RUnit, GGtools,
Homo.sapiens, IRanges, erma, GenomeInfoDb, gwascat, geuvPack
geuvPack, geuvStore2, Rsamtools, knitr, rmarkdown, ggbio,
BiocStyle, RUnit, multtest, gwascat, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene, ldblock
BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm10
parallel, digest, crayon, RUnit, knitr, BiocGenerics
RUnit, rentrez, knitr, rmarkdown, BiocStyle
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Hsapiens.UCSC.hg19.knownGene, knitr, rmarkdown, testthat
knitr, rmarkdown, testthat, org.Ag.eg.db, org.Bt.eg.db,
org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db,
org.Gg.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Pt.eg.db,
org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db, rtracklayer
class, hgu95av2.db, tkWidgets, ALL, ROC, DESeq, pasilla,
RColorBrewer, BiocStyle, knitr
GeneMeta, breastCancerVDX, breastCancerMAINZ,
breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT,
breastCancerNKI, rmeta, Biobase, xtable, knitr, caret, survival
RTN, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown,
Fletcher2013b, geneplast.data.string.v91, ggplot2, ggpubr, plyr
BiocGenerics, genomationData, knitr, RColorBrewer, rmarkdown
testthat, knitr, BiocStyle, rmarkdown, DNAcopy, stats,
BSgenome, Biostrings
testthat, ggplot2, gridExtra, ape, ggrepel, knitr, reshape,
xtable
vsn, BSgenome.Hsapiens.UCSC.hg19, Homo.sapiens,
TxDb.Hsapiens.UCSC.hg19.knownGene, chipseq,
TxDb.Mmusculus.UCSC.mm9.knownGene, knitr, BiocStyle, testthat,
EnsDb.Hsapiens.v75, tinytex
testthat, flowWorkspaceData, knitr, rmarkdown, flowStats,
openCyto, flowViz, ggridges, vdiffr
emojifont, ggimage, ggplotify, grDevices, knitr, prettydoc,
rmarkdown, scales, stats, testthat, tibble
testthat, knitr, rmarkdown, survival, survcomp, pROC,
VennDiagram, BiocStyle, curatedTCGAData, TCGAutils
vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db,
lungExpression, org.Hs.eg.db, GSEABase, penalized, gss, MASS,
boot, rpart, mstate
a4Preproc, ALL, BiocStyle, clipper, codetools,
hgu133plus2.db, hgu95av2.db, impute, knitr, org.Hs.eg.db,
parallel, R.rsp, RCy3, rmarkdown, SPIA (>= 2.2), testthat,
topologyGSA (>= 1.4.0)
SummarizedExperiment, knitr, plotly, RANKS, WGCNA
testthat (>= 1.0.0), knitr, RColorBrewer, markdown,
ComplexHeatmap (>= 1.99.0), Cairo, png, jpeg, tiff
DO.db, DT, knitr, RBGL, RUnit, snpStats, Gviz,
VariantAnnotation, AnnotationHub, gQTLstats, graph, ggbio,
ggplot2, DelayedArray
knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, biomaRt,
BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocGenerics
org.Hs.eg.db, GO.db, knitr, BiocStyle, testthat
testthat, BiocStyle, knitr, rmarkdown, scRNAseq, scater,
DelayedArray (>= 0.7.44), Rtsne, irlba, RColorBrewer, viridis,
org.Mm.eg.db, htmltools
knitr, testthat, rmarkdown, sva, Rtsne, pheatmap, corrplot,
DescTools, RColorBrewer
knitr, rmarkdown, Rsubread (>= 1.29.0), testthat
testthat, BiocStyle, airway, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg38.knownGene, DEFormats, edgeR
RUnit, hgu95av2.db, knitr, GenomicRanges,
SummarizedExperiment, GOstats, ggbio, GO.db, Gviz, rtracklayer,
metagenomeSeq, gplots, vegan, Biobase
MSnbase, OrgMassSpecR, XML, RJSONIO, Hmisc, gplots,
RColorBrewer, gridExtra, limma, boot, DBI, MASS
knitr, org.Mm.eg.db, targetscan.Hs.eg.db, pheatmap,
BiocStyle, testthat
knitr, png, limma, grid, DT, randomForest, digest, testthat
BiocStyle, knitr, testthat, magrittr,
BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Hsapiens.UCSC.hg19.masked,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, org.Hs.eg.db, org.Mm.eg.db,
pasillaBamSubset
affy, AnnotationDbi, BiasedUrn, Biobase, ellipse, GO.db,
gplots, illuminaio, locfit, MASS, org.Hs.eg.db, splines,
statmod (>= 1.2.2), vsn
knitr, rmarkdown, igraph, reshape2, limma,
knitr, rmarkdown, BiocStyle, ggrepel, plotly, iheatmapr,
spelling, testthat
Biobase, BiocGenerics, BiocStyle, FlowSorted.Blood.450k,
knitr, leukemiasEset, minfi, minfiData, rmarkdown, RUnit
knitr, rmarkdown, BSgenome, Biostrings, NMF, mclust
biomaRt (>= 2.34.1), httr (>= 1.2.1), IRanges (>= 2.8.2),
knitr, testthat, tidyverse, rmarkdown
testthat, knitr, rmarkdown, BiocStyle, AnnotationHub
beachmat, HDF5Array, Rhdf5lib, BiocStyle, TENxPBMCData,
scater, DelayedMatrixStats, knitr, testthat
BiocGenerics, RUnit, knitr, BiocStyle, rmarkdown
BiocGenerics, similaRpeak, RUnit, knitr, BiocStyle,
rmarkdown
annotate, BiocGenerics, biomformat, knitr, gss, testthat (>=
0.8), vegan, interactiveDisplay
BiocGenerics, GenomicRanges, rtracklayer, Rsamtools,
survcomp, VennDiagram, knitr, zoo, RUnit, BiocManager,
BSgenome, RSQLite
knitr, BiocStyle, matrixStats, msd16s (>= 0.109.1), etec16s,
testthat, gss, curatedMetagenomicData
BiocStyle, knitr, rmarkdown, RUnit, methylInheritance
knitr, rmarkdown, DSS, bsseq, plotly,
BSgenome.Mmusculus.UCSC.mm9, MafDb.1Kgenomes.phase3.GRCh38,
MafDb.1Kgenomes.phase3.hs37d5, GenomicScores, Biostrings,
RColorBrewer, GenomicRanges, GenomeInfoDb, IRanges, testthat
(>= 2.1.0)
knitr, testthat (>= 2.1.0), BiocGenerics, BiocStyle, tidyr,
ggplot2
BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit,
methInheritSim
Biobase, BiocStyle, SummarizedExperiment, knitr, rmarkdown
testthat, knitr, rmarkdown, BiocStyle, SuperLearner, earth,
nnet, gam, arm, snow, parallel, BatchJobs, minfiData,
methyvimData
BiocGenerics, RUnit, knitr, rtracklayer, utils
BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, shiny
BiocGenerics, BiocStyle, Cairo, knitcitations, knitr,
rmarkdown, testthat
knitr, rmarkdown, BiocStyle, testthat, lintr, Matrix, abind,
affydata, hgu95av2cdf, oligoData, pd.hugene.1.0.st.v1
IlluminaHumanMethylation450kmanifest (>= 0.2.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19 (>= 0.2.1),
minfiData (>= 0.18.0), minfiDataEPIC, FlowSorted.Blood.450k (>=
1.0.1), RUnit, digest, BiocStyle, knitr, rmarkdown, tools
minfiData, BiocStyle, knitr, rmarkdown, edgeR,
tweeDEseqCountData
BiocStyle, knitr, rmarkdown, testthat, rgl
testthat, BiocStyle, knitr, rmarkdown, roxygen2 (>= 5.0.0)
knitr, devtools, rmarkdown, BiocGenerics, RUnit
destiny, Hmisc, knitr, Seurat, scater, testthat
RUnit, BiocGenerics, MotifDb, RColorBrewer, BiocStyle, knitr,
httr, htmltools
BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP.20120608,
SNPlocs.Hsapiens.dbSNP142.GRCh37, knitr, rmarkdown,
BSgenome.Drerio.UCSC.danRer7, BiocStyle
knitr, rmarkdown, testthat, MotifDb, seqLogo, prettydoc
testthat, xcms, BiocStyle, knitr, rmarkdown, msPurityData,
CAMERA, RPostgres, RMySQL
xcms (>= 3.0.0), CAMERA, Risa (>= 1.0.0), knitr, Heatplus,
pcaMethods, sp
knitr, gplots, RUnit, BiocGenerics, preprocessCore, Biobase,
GEOquery
BiocStyle, edgeR, knitr, rmarkdown, testthat (>= 1.0.2)
BiocStyle, dplyr, knitr, GEOquery, Matrix, methods,
rmarkdown,
BiocStyle, cowplot, ExperimentHub, knitr, RColorBrewer,
rmarkdown, testthat, UpSetR
msdata (>= 0.15.1), RUnit, mzID, BiocStyle (>= 2.5.19),
knitr, XML
knitr, rmarkdown, BiocStyle, GenomicRanges, rtracklayer,
CAGEfightR
testthat, knitr, rmarkdown, BiocStyle, lintr, lassoshooting
knitr, testthat, Rtsne, biomaRt, igraph, STRINGdb, NMI,
pheatmap, ggplot2, BiocStyle, rmarkdown, BiocParallel, uwot
knitr, rmarkdown, BiocStyle (>= 1.0.0), RUnit, BiocGenerics
(>= 0.8.0)
BiocStyle, testthat (>= 1.0), knitr, rmarkdown
Starr, BiocStyle, knitr, rmarkdown, testthat
BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit
BiocStyle, knitr, rmarkdown, snpStats, brgedata
BiocStyle, knitr, rmarkdown, testthat, GEOquery,
VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges,
FDb.InfiniumMethylation.hg19, snpStats
knitr, org.Hs.eg.db, org.Mm.eg.db, testthat, BiocStyle
flowWorkspaceData, knitr, testthat, utils, tools, parallel,
ggcyto, CytoML
knitr, rmarkdown, limma, org.Hs.eg.db, GO.db, snow, parallel
DBI, RUnit, clusterProfiler, knitr, rmarkdown
pRolocdata, knitr, BiocStyle (>= 2.5.19), rmarkdown
testthat, rmarkdown, pRolocdata (>= 1.9.4), roxygen2,
synapter, xtable, rgl, BiocStyle (>= 2.5.19), hpar (>= 1.15.3),
dplyr, GO.db, AnnotationDbi, Rtsne (>= 0.13), nipals, reshape
RUnit, sandwich, MASS, knitr, GenomeInfoDb, GenomicRanges,
gQTLBase, gQTLstats, geuvStore2, gwascat, BiocStyle
airway, circlize, grDevices, knitr, RCurl, reshape2,
rmarkdown, SummarizedExperiment, survminer, testthat, tidyverse
testthat, knitr, BiocStyle, rmarkdown, RColorBrewer, biomaRt,
estrogen, affy, hgu95av2, hgu95av2cdf, limma, foreach, doSNOW,
parallel, org.Hs.eg.db
testthat, BiocStyle, airway, org.Hs.eg.db, htmltools
Rgraphviz, GO.db, hgu133plus2.db, mouse4302.db, rat2302.db,
hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db,
pcaGoPromoter.Hs.hg19, pcaGoPromoter.Mm.mm9,
pcaGoPromoter.Rn.rn4, serumStimulation, parallel
testthat, faahKO, msdata, knitr, rmarkdown, pander, BiocStyle
testthat, lintr, knitr, rmarkdown, BiocStyle
testthat, BiocStyle, knitr, rmarkdown, data.table
knitr, rmarkdown, forcats, testthat, BiocStyle,
SingleCellExperiment
testthat, knitr, rmarkdown, BiocStyle, phyloseq, glmnet,
dplyr
yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM,
gtools, biomaRt, snowfall, AnnotationDbi, knitr, rmarkdown,
BiocStyle
knitr, htmltools, BiocStyle, rmarkdown, testthat
knitr, BiocStyle, rmarkdown, testthat (>= 2.1.0),
HelloRanges, HelloRangesData, BSgenome.Hsapiens.UCSC.hg19,
pasillaBamSubset, covr, ggplot2
BSgenome.Hsapiens.UCSC.hg38.masked,
TxDb.Hsapiens.UCSC.hg38.knownGene,
BSgenome.Mmusculus.UCSC.mm10.masked, GWASTools (>= 1.13.24),
VariantAnnotation, SummarizedExperiment, knitr
BiocStyle, knitr, Gviz, rtracklayer, ggplot2,
BSgenome.Hsapiens.UCSC.hg38, testthat, stringr, stringi
knitr, rmarkdown, devtools, ggpubr, gtable, gridExtra,
roxygen2, testthat (>= 2.1.0), spelling
testthat (>= 2.1.0), MSnbase, dplyr, stringr, readr, tidyr,
tibble, limma, DEP, numDeriv, pheatmap, knitr, rmarkdown
BiocStyle, testthat, knitr, rmarkdown, png, Rsamtools,
ggplot2
airway, biomaRt, BiocFileCache, broom, DESeq2, dplyr, knitr,
readr, readxl
BiocStyle, gridExtra, grid, testthat, devtools, knitr,
rmarkdown, ComplexHeatmap, viridis, ggplot2
RforProteomics, knitr, BiocStyle, R.utils, RUnit,BiocGenerics
testthat, knitr, parallel, devtools, rmarkdown, gplots, covr,
car, rstudioapi, spelling
testthat (>= 2.1.0), knitr, rmarkdown, gridExtra
BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, testthat, BiocStyle,
knitr, rmarkdown, BiocManager
bodymapRat, quantro, knitr, rmarkdown, BiocStyle, testthat
Rgraphviz, RCurl, graph, RUnit, BiocGenerics, nem, RBGL,
igraph
testthat (>= 0.3), knitr, circlize (>= 0.4.8), rmarkdown
testthat, BiocStyle, knitr, rmarkdown, ALL, RCy3, caret,
e1071, parallel, doParallel
knitr, rmarkdown, pander, BiocStyle,
BSgenome.Ecoli.NCBI.20080805
knitr, RColorBrewer, sqldf, BiocGenerics, testthat,
BiocStyle, jsonlite, d3heatmap, glmnet, foreach, doSNOW,
parallel
AnnotationDbi, BiocManager, BiocStyle (>= 2.5.19), DESeq2,
sessioninfo, EnsDb.Hsapiens.v79, GenomicFeatures,
knitcitations, knitr (>= 1.6), org.Hs.eg.db, RefManageR,
regionReport (>= 1.9.4), rmarkdown (>= 0.9.5), testthat (>=
2.1.0)
grid, GenomeInfoDb, Rsamtools, BiocStyle, knitr, rmarkdown,
zoo, RUnit, BiocManager, BSgenome, RSQLite, RMySQL
BiocManager, biovizBase, bumphunter (>= 1.7.6), derfinderPlot
(>= 1.3.2), sessioninfo, DT, DESeq, edgeR, ggbio (>= 1.13.13),
ggplot2, grid, gridExtra, IRanges, mgcv, pasilla, pheatmap,
RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene, whisker
knitr, testthat, Rtsne, org.Mm.eg.db, org.Hs.eg.db,
BiocStyle, restfulSEData
mclust, flexmix, testthat, BiocStyle, knitr, rmarkdown
boot, tools, BiocGenerics, knitr, xtable
bit64, BiocStyle, knitr, rmarkdown, testthat, microbenchmark,
dplyr, ggplot2
knitr, testthat, BiocStyle, DT, reticulate
readxl, knitr, rmarkdown, reshape2, pander, testthat
GO.db, knitr (>= 1.1.0), BiocStyle (>= 2.5.19), testthat,
lubridate, DT, rmarkdown,
BiocGenerics, BiocStyle, knitr, multtest, omicade4,
rmarkdown, testthat
MSnbase, Biostrings, BiocStyle, testthat, knitr
BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1),
genefilter, limma, org.Hs.eg.db, hgu133plus2.db,
GenomicFeatures, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit
knitr, rmarkdown, GEOquery, affy, airway, QUBIC
testthat, knitr, rmarkdown, SingleCellExperiment,
SummarizedExperiment, scRNAseq, cowplot
Matrix (>= 1.2), testthat, knitr, parallel, rmarkdown,
RColorBrewer, ReactomePA, clusterProfiler, cowplot,
org.Hs.eg.db, reshape2, xlsx, dendextend, networkD3, Rtsne,
BiocParallel, e1071, WGCNA, devtools, DOSE
BiocStyle, covr, HDF5Array, knitr, Matrix, rmarkdown, scales,
scater, testthat, badger
testthat (>= 2.1.0), covr, knitr, rmarkdown, BiocStyle,
Matrix, ggplot2, ggpubr, splatter, SingleCellExperiment
BiocStyle, AnnotationHub, AnnotationDbi, knitr, rmarkdown,
BiocFileCache, testthat
testthat, LRBase.Hsa.eg.db, MeSH.Hsa.eg.db, LRBase.Mmu.eg.db,
MeSH.Mmu.eg.db, LRBaseDbi, Seurat, Homo.sapiens
BiocStyle, BiocFileCache, biomaRt, beachmat, cowplot,
destiny, knitr, scRNAseq, robustbase, rmarkdown, Rtsne, uwot,
testthat, pheatmap, Biobase, limma, DropletUtils
knitr, cba, fastcluster, WGCNA, GO.db, org.Hs.eg.db,
rmarkdown
BiocStyle, knitr, rsvd, Rtsne, scater, cowplot
ggrepel, knitr, rmarkdown, testthat (>= 2.1.0), covr,
TENxPBMCData, scater, shinydashboard, iSEE, igraph, scran
BSgenome.Mmusculus.UCSC.mm10, BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Hsapiens.UCSC.hg38.knownGene, org.Hs.eg.db, Biobase,
BiocGenerics, ggplot2, ggthemes
BiocStyle, DT, ggplot2, knitr, miniUI, NMF, plotly, reshape2,
rmarkdown, scran, scRNAseq, shiny, testthat, visNetwork,
doParallel, BatchJobs
testthat, BiocStyle, knitr, beachmat, HDF5Array, scRNAseq,
dynamicTreeCut, DESeq2, monocle, Biobase, aroma.light, pheatmap
BiocStyle, knitr, rmarkdown, Rsubread, testthat
knitr, BiocStyle, rmarkdown, testthat, BiocManager
testthat, BiocStyle, knitr, rmarkdown, covr
BiocFileCache, BiocManager, BiocStyle, ChIPpeakAnno, covr,
cowplot, knitr, rmarkdown, testthat
GenomicRanges, BiocGenerics, sesame, testthat, knitr
scales, knitr, rmarkdown, testthat, minfi,
SummarizedExperiment, FlowSorted.CordBloodNorway.450k,
FlowSorted.Blood.450k, dplyr, tidyr, BiocStyle
testthat, BiocStyle, knitr, rmarkdown, GenomicInteractions,
covr
testthat, knitr, rmarkdown, ggthemes, gridExtra, xlsx
knitr, testthat, rmarkdown, BiocStyle, org.Hs.eg.db
RUnit, BiocGenerics, knitr, Rsamtools, GenomicAlignments,
rtracklayer, rmarkdown, BiocStyle
RUnit, BiocStyle, curatedOvarianData, parathyroidSE, superpc
testthat, Rsubread, BiocStyle, knitr, lintr, bladderbatch,
rmarkdown, org.Mm.eg.db, org.Hs.eg.db, scRNAseq, xtable,
spelling, GSEABase
BiocGenerics, BiocStyle, clusterExperiment, destiny, gam,
knitr, mclust, mgcv, RColorBrewer, rgl, rmarkdown, testthat,
covr
GeoDE, doParallel, testthat, knitr, rmarkdown, ggplot2,
Rtsne, Biobase, BiocStyle
testthat, lme4, BiocStyle, knitr, rmarkdown, roxygen2 (>=
5.0.0)
BiocGenerics, BiocStyle (>= 2.2), knitr (>= 1.15), rmarkdown,
RUnit (>= 0.4)
BiocStyle, covr, cowplot, knitr, limSolve, lme4, progress,
pscl, testthat, rmarkdown, scDD, scran, mfa, phenopath, BASiCS
(>= 1.7.10), zinbwave, SparseDC, BiocManager, spelling, igraph,
DropletUtils
knitr, rmarkdown, BiocStyle, methods, Biobase, edgeR, limma,
DEXSeq, testthat
testthat, BiocStyle, knitr, rmarkdown,
gWidgets2,gWidgets2RGtk2,RGtk2
limma, edgeR, DESeq2, DEXSeq (>= 1.9.7), testthat, knitr
Hmisc, CPE, clinfun, xtable, Biobase, BiocManager
pamr, bladderbatch, BiocStyle, zebrafishRNASeq, testthat
dplyr, ggplot2, BiocStyle, knitr, qvalue, reshape2,
rmarkdown, testthat
knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr
synapterdata (>= 1.13.2), xtable, testthat (>= 0.8), BRAIN,
BiocStyle
ape, RUnit, BiocStyle, knitr, rmarkdown, biomaRt,
BiocParallel, BiocManager
RUnit, BiocStyle, knitr, rmarkdown, systemPipeR
knitr, rmarkdown, testthat, BiocStyle, tRNAscanImport
knitr, rmarkdown, testthat, httptest, BiocStyle, rtracklayer
BiocStyle, knitr, rmarkdown, testthat, ggplot2,
BSgenome.Scerevisiae.UCSC.sacCer3
testthat (>= 2.1.0), knitr, rmarkdown, shinytest, shinyBS,
covr
drosgenome1.db, puma, lumi, BiocStyle, BiocManager
BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq,
SummarizedExperiment
EBImage, knitr, rmarkdown, testthat, tofsimsData,
BiocParallel, RColorBrewer
limma, edgeR, DESeq2, NBPSeq, dplyr, testthat, knitr,
rmarkdown, reshape2, tidyr, readr, org.At.tair.db,
AnnotationDbi
topdownrdata (>= 0.2), knitr, ranger, testthat, BiocStyle,
xml2
biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit,
org.Hs.eg.db, BiocStyle, knitr, VariantAnnotation, httr,
htmltools
knitr, rmarkdown, cowplot, dplyr, tidyr, testthat
BiocStyle, knitr, rmarkdown,
TxDb.Hsapiens.UCSC.hg19.knownGene, testthat
Biostrings, ggplot2, ggtree, igraph, knitr, phangorn,
prettydoc, testthat, tidyr, vroom
RUnit, plyr, knitr, BiocGenerics, rmarkdown,
BSgenome.Scerevisiae.UCSC.sacCer3
haplo.stats, mcbiopi, splines, logicFS (>= 1.28.1),
KernSmooth, VariantAnnotation
rgl (>= 0.93.932), BSgenome.Celegans.UCSC.ce10, rtracklayer
devtools, knitr, reshape2, rmarkdown, testthat, BiocStyle
knitr, rmarkdown, testthat, tximportData, org.Dm.eg.db,
DESeq2, edgeR, limma, devtools
knitr, rmarkdown, testthat, tximportData,
TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), limma,
edgeR, csaw, DESeq2 (>= 1.11.6), rhdf5, jsonlite, matrixStats,
Matrix, fishpond
spelling, knitr, bookdown, TFBSTools, rmarkdown, MotifDb,
testthat, Logolas, BiocParallel, seqLogo, motifStack, dplyr
BiocStyle, knitr, pander, rmarkdown, edgeR, dendextend,
tximport, tximportData, ballgown, DESeq2, RUnit, BiocGenerics,
r2glmm, readr
affydata, hgu95av2cdf, BiocStyle, knitr, dplyr, testthat
knitr, devtools, testthat, roxygen2, rprojroot, rmarkdown,
scater
knitr, rmarkdown, biomaRt, GenomicFeatures, testthat,
ensembldb, EnsDb.Hsapiens.v86, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationDbi,
AnnotationFilter
BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata (>=
0.25.1), ncdf4, rgl, microbenchmark, testthat, pander,
magrittr, MALDIquant, pheatmap
BiocStyle, knitr, rmarkdown, digest, mtbls2, testthat
erma, BiocStyle, knitr, rmarkdown, gQTLstats (>= 1.9.2),
doParallel, geuvPack, knitcitations, bibtex
knitr, limma, edgeR, GEOquery, stringr, printr
knitr, rmarkdown, testthat, matrixStats, magrittr, scRNAseq,
ggplot2, biomaRt, BiocStyle, Rtsne, DESeq2, Seurat
knitr, rmarkdown, BiocStyle, org.Mm.eg.db, AnnotationDbi,
TBX20BamSubset, Rsamtools, testthat
Biobase, BiocStyle, doSNOW, dynamicTreeCut, DT, GEOquery,
knitr, NMF, plyr, R2HTML, rmarkdown, reshape2, plotly, rbokeh,
devtools, Rtsne, tsne, testthat, zoo
testthat (>= 2.1.0), covr, devtools, knitr, rmarkdown, mtbls2
BiocStyle, knitr, rmarkdown, testthat, magick
BiocStyle, knitr, rmarkdown, testthat, apeglm, remotes,
ggplot2, reshape2, Biostrings
BiocManager, Biobase, BSgenome.Celegans.UCSC.ce2,
BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Hsapiens.UCSC.hg38.masked,
BSgenome.Mmusculus.UCSC.mm10, BSgenome.Rnorvegicus.UCSC.rn5,
BSgenome.Scerevisiae.UCSC.sacCer1,
BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
SNPlocs.Hsapiens.dbSNP144.GRCh38,
XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, hgu95av2probe, RUnit
knitr, rmarkdown, testthat, BiocStyle, TENxBUSData,
TxDb.Hsapiens.UCSC.hg38.knownGene, BSgenome.Hsapiens.UCSC.hg38,
EnsDb.Hsapiens.v86
knitr, testthat, rmarkdown, AnnotationHub, httr
BiocStyle, knitr, rmarkdown, testthat, tm, SnowballC,
visNetwork, clipr, blastula, kableExtra
BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt,
broom, colorspace, cowplot, dendsort, doParallel, foreach,
forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin,
IHW, limma, magrittr, Matrix, maxstat, nat, org.Hs.eg.db,
pheatmap, piano, readxl, Rtsne, tidyr, xtable
BiocStyle, diffcyt, flowWorkspace, ggcyto, knitr, openCyto,
rmarkdown, testthat
AnnotationHub, BSgenome.Btaurus.UCSC.bosTau6.masked,
BiocStyle, ComplexHeatmap, Gviz, MultiAssayExperiment,
TCGAutils, curatedTCGAData, ensembldb, grid, knitr, regioneR,
rmarkdown
airway, kableExtra, knitr, org.Hs.eg.db, rmarkdown, testthat
data.table, dplyr, tidyr, readr, RUnit, BiocGenerics,
reactome.db, BSgenome.Ecoli.NCBI.20080805,
BSgenome.Hsapiens.UCSC.hg19, org.Ce.eg.db, org.Hs.eg.db,
BSgenome.Celegans.UCSC.ce10, BSgenome.Drerio.UCSC.danRer7,
BSgenome.Hsapiens.UCSC.hg38, EnsDb.Hsapiens.v75,
EnsDb.Hsapiens.v79, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, gplots, BiocStyle, knitr,
rmarkdown, testthat, trackViewer, motifStack, OrganismDbi
clusterProfiler (>= 3.15.4), ggimage, ggplotify, ggupset,
ReactomePA, org.Hs.eg.db, knitr, rmarkdown, testthat, tibble
knitr, rmarkdown, DT, mclust, scater, ExPosition, BiocStyle
testthat (>= 1.0.0), knitr, markdown, dendsort, Cairo, jpeg,
tiff, fastcluster, dendextend (>= 1.0.1), grImport, grImport2,
glue, GenomicRanges, gridtext
testthat, flowWorkspaceData , knitr, parallel
BiocStyle, knitr, rmarkdown, testthat, rtracklayer,
BSgenome.Hsapiens.UCSC.hg19
testthat, knitr, rmarkdown, vsn, pheatmap, RColorBrewer,
apeglm, ashr, tximport, tximeta, tximportData, readr, pbapply,
airway, pasilla (>= 0.2.10)
GenomicFeatures (>= 1.13.29), pasilla (>= 0.2.22),
parathyroidSE, BiocStyle, knitr, rmarkdown, testthat
knitr, lattice, latticeExtra, rmarkdown, BiocStyle, testthat
(>= 2.1.0)
BiocParallel, HDF5Array, genefilter, SummarizedExperiment,
airway, pryr, DelayedMatrixStats, knitr, BiocStyle, RUnit
BiocStyle, knitr, testthat, data.table, DT,
GenomicInteractions, webshot, R.utils, covr, sesameData
SummarizedExperiment, testthat, Biobase, survminer,
affycoretools, knitr, plotROC, prognosticROC
BiocStyle, knitr, rmarkdown, testthat, Modstrings,
rtracklayer
BiocStyle, knitr, rmarkdown, testthat, httptest,
AnnotationHub, ggplot2, EpiTxDb.Hs.hg38,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Scerevisiae.UCSC.sacCer3,
TxDb.Hsapiens.UCSC.hg38.knownGene
testthat (>= 2.1.0), knitr, rmarkdown, htmltools, BiocStyle
RCurl, RDAVIDWebService, gage, topGO, GO.db, reactome.db,
RUnit, BiocGenerics, org.Sc.sgd.db, knitr, rmarkdown,
AnnotationDbi, RGtk2, BiocManager
BiocStyle, knitr, rmarkdown, testthat, covr,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db,
RUnit, limma, RColorBrewer, genefilter, edgeR, GSVAdata
ncdf4, GWASdata, BiocGenerics, RUnit, Biostrings,
GenomicRanges, IRanges, SNPRelate, snpStats, S4Vectors,
VariantAnnotation, parallel
knitr, BiocStyle, htmltools, clusterProfiler, macrophage,
org.Hs.eg.db, magrittr, testthat (>= 2.1.0)
GenomicRanges, Rsamtools, GenomicAlignments, GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, BSgenome,
BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2,
BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocStyle, knitr
BiocStyle, RUnit, genefilter, deepSNV, snpStats,
RNAseqData.HNRNPC.bam.chr14, Biostrings, Homo.sapiens
BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19,
phastCons100way.UCSC.hg19, MafDb.1Kgenomes.phase1.hs37d5,
SNPlocs.Hsapiens.dbSNP144.GRCh37, VariantAnnotation,
TxDb.Hsapiens.UCSC.hg19.knownGene, gwascat, RColorBrewer,
shiny, shinythemes, shinyjs, shinycustomloader, data.table, DT
knitr, rmarkdown, BiocStyle, scran (>= 1.11.4), BiocSingular,
scater, Rtsne, igraph, iSEE, testthat
BiocParallel, GenomicRanges, SummarizedExperiment (>=
1.15.1), h5vcData, ExperimentHub, TENxBrainData,
GenomicFeatures, BiocStyle
parallel, knitr, gdsfmt, SNPRelate, SeqArray, ggplot2,
reshape2
knitr, rmarkdown, testthat, lme4(>= 1.0), blme, roxygen2(>
6.0.0), numDeriv, car, gdata, lattice, GGally, GSEABase, NMF,
TxDb.Hsapiens.UCSC.hg19.knownGene, rsvd, limma, RColorBrewer,
BiocStyle, scater, DelayedArray, Matrix, HDF5Array, zinbwave,
dplyr
knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0)
BiocStyle, breastCancerMAINZ, breastCancerNKI,
breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP,
breastCancerVDX, knitr, mGSZ, MIGSAdata
class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL,
hgu95av2.db, som, hu6800.db, lattice, caret (>= 5.07),
golubEsets, ada, keggorthology, kernlab, mboost, party, klaR,
testthat
BiocStyle, knitr, rmarkdown, testthat, viper
DT, prettydoc, treeio, tidyverse, testthat, knitr, nlme
biomaRt, GOstats, cluster, hgu133a.db, mclust, igraph,
breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP,
breastCancerVDX, future, future.apply
human610quadv1bCrlmm (>= 1.0.3), BSgenome.Hsapiens.UCSC.hg18,
BSgenome.Hsapiens.UCSC.hg19, RUnit
RUnit, seqLogo, BiocStyle, knitr, rmarkdown
testthat, knitr, BiocStyle, rmarkdown, roxygen2, imputeLCMD,
impute, norm, pcaMethods, vsn, preprocessCore
testthat, devtools, knitr, rprojroot, rmarkdown, ggplot2,
BiocStyle
BiocStyle (>= 2.2), DT, ggplot2, knitr, rmarkdown, testthat,
specL, lattice, scales
knitr,
TxDb.Hsapiens.UCSC.hg38.knownGene,TxDb.Drerio.UCSC.danRer10.refGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,TxDb.Dmelanogaster.UCSC.dm6.ensGene,
testthat,TxDb.Celegans.UCSC.ce11.refGene,rmarkdown,
TxDb.Rnorvegicus.UCSC.rn6.refGene,TxDb.Hsapiens.UCSC.hg19.knownGene,
org.Mm.eg.db,
org.Rn.eg.db,org.Hs.eg.db,org.Dr.eg.db,BiocGenerics,
org.Sc.sgd.db, org.Ce.eg.db,org.Dm.eg.db, methods,
tidyr, dnet, gprofiler2, BiocStyle, testthat, knitr,
rmarkdown, ggplot2, ggraph
foreach, doParallel, BiocStyle, knitr, rmarkdown, png,
GGally, gridExtra, ggforce, fgsea, RColorBrewer, ggpubr,
rtracklayer
FCBF, plotly, SummarizedExperiment, SingleCellExperiment,
knitr, rmarkdown, testthat (>= 2.1.0), BiocManager, biomaRt
gplots,RMassBankData, xcms (>= 1.37.1), CAMERA, RUnit
knitr, rmarkdown, BiocStyle, GenomicRanges, sessioninfo,
testthat
knitr, rmarkdown, testthat, RUnit, BiocGenerics
Biobase, BiocStyle, BiocParallel, doParallel, DT, tibble,
foreach, igraph, knitr,
RcisTarget.hg19.motifDBs.cisbpOnly.500bp, rmarkdown, testthat,
visNetwork, arrow
testthat, knitr, rmarkdown, BiocStyle, dplyr
AnnotationDbi, rpx, DT, knitr, rmarkdown, BiocStyle, mzR,
xcms, msdata, isobar, MALDIquant (>= 1.12), MALDIquantForeign,
readBrukerFlexData, synapter, synapterdata, IPPD, Rdisop,
OrgMassSpecR, SummarizedExperiment, BRAIN, rols, hpar, GO.db,
org.Hs.eg.db, e1071, biomaRt, RColorBrewer, ggplot2, reshape2,
xtable, lattice, mzID, pRoloc, pRolocdata, MSnID, msmsTests,
msmsEDA, DEP, corrplot, beanplot, Heatplus, gplots,
VennDiagram, protViz, genefilter, plotly, gridExtra, dplyr,
lubridate, magick, cleaver
knitr, rmarkdown, WGSmapp, BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Mmusculus.UCSC.mm10, testthat (>= 2.1.0)
BiocStyle, knitr, rmarkdown, genefilter, edgeR, DESeq
testthat, knitr, rmarkdown, BiocStyle, beachmat,
SingleCellExperiment, scater, scRNAseq, scran, ggplot2,
pheatmap, grDevices, gridExtra, viridis, AnnotationHub,
AnnotationDbi
testthat, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown,
ggplot2, Seurat, glmnet, cowplot, Matrix, rtracklayer
testthat, spelling, lintr, covr, knitr, rmarkdown, BiocStyle
BiocStyle, knitr, readr, readxl, dplyr, caret, randomForest,
doMC, e1071, DT, htmltab
jpeg, png, BiocStyle, rmarkdown, devtools, maftools,
parmigene, c3net, minet, dnet, Biobase, affy, testthat, sesame,
pathview, clusterProfiler, ComplexHeatmap, circlize,
ConsensusClusterPlus, igraph, TCGAbiolinksGUI.data, supraHex,
limma, edgeR, sva, EDASeq, survminer, genefilter, gridExtra,
survival, doParallel, parallel, ggrepel (>= 0.6.3), scales,
grid
BiocFileCache, BiocStyle, curatedTCGAData, ComplexHeatmap,
devtools, dplyr, IlluminaHumanMethylation450kanno.ilmn12.hg19,
impute, knitr, magrittr, mirbase.db, org.Hs.eg.db,
RColorBrewer, readr, RTCGAToolbox (>= 2.17.4), rtracklayer,
R.utils, testthat, TxDb.Hsapiens.UCSC.hg18.knownGene,
TxDb.Hsapiens.UCSC.hg19.knownGene
knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr,
RColorBrewer, geneplast
ggtree, ggplot2, BiocStyle, knitr, rmarkdown, testthat
MLP, nlcv, ALL, Cairo, Rgraphviz, GOstats
knitr, rmarkdown, BiocStyle, testthat, BiocFileCache
knitr, rmarkdown, BiocStyle, testthat, callr
BiocGenerics, RUnit, BiocStyle, minfiData, parallel,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylationEPICanno.ilm10b2.hg19, bumphunter
testthat, knitr, rmarkdown, BiocStyle, arm, earth, xgboost,
SuperLearner, Matrix, DBI, biotmleData (>= 1.1.1)
BiocStyle, knitcitations, knitr, rmarkdown, sessioninfo,
testthat (>= 2.1.0), covr
testthat, knitr, roxygen2, rmarkdown, biomaRt, covr,
BiocManager, BiocStyle, M3DExampleData, TENxPBMCData
testthat, knitr, roxygen2, rmarkdown, citr, devtools,
gridExtra, ggpubr, VennDiagram, BSgenome.Mmusculus.UCSC.mm9,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
BiocManager,
AnnotationHub, knitr, org.Hs.eg.db, prettydoc, ReactomePA,
testthat
ComplexHeatmap, covr, knitr, rmarkdown, testthat, ggrepel,
BiocStyle
BiocStyle, EBSeq, DESeq, DESeq2 (>= 1.1.31), baySeq (>=
2.2.0), genefilter, NOISeq, TCC, NBPSeq (>= 0.3.0), rmarkdown
BiocStyle, biomaRt, irlba, knitr, destiny, VGAM
BiocStyle, knitr, RaggedExperiment, readr, rmarkdown,
TCGAutils, testthat
Biobase, BiocManager, BiocSet, edgeR, DESeq2, GEOquery, GSA,
knitr, limma, readxl, rmarkdown, S4Vectors,
SummarizedExperiment, testthat, covr
sessioninfo, knitcitations (>= 1.0.1), knitr (>= 1.6),
RefManageR, rmarkdown (>= 0.3.3), BiocStyle
sessioninfo, knitcitations (>= 1.0.1), knitr (>= 1.6),
BiocStyle (>= 2.5.19), rmarkdown (>= 0.3.3), testthat, covr
biovizBase (>= 1.27.2), bumphunter (>= 1.7.6), derfinderData
(>= 0.99.0), sessioninfo, knitcitations (>= 1.0.1), knitr (>=
1.6), BiocStyle (>= 2.5.19), org.Hs.eg.db, RefManageR,
rmarkdown (>= 0.3.3), testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene, covr
BiocStyle (>= 2.5.19), sessioninfo, derfinderData (>=
0.99.0), derfinderPlot, DESeq2, ggplot2, knitcitations (>=
1.0.1), knitr (>= 1.6), limma, RefManageR, rmarkdown (>=
0.3.3), testthat (>= 2.1.0), TxDb.Hsapiens.UCSC.hg19.knownGene,
covr
plotly, testthat, Seurat (>= 2.2), DESeq2, knitr, BiocStyle,
scRNAseq
BiocStyle, knitr, rmarkdown, curatedOvarianData, testthat
Biobase, BiocStyle, knitr, pheatmap, pkgdown, Seurat,
SingleCellExperiment, SummarizedExperiment, testthat (>=
2.1.0), tibble, tidyr, utils, viper
BiocStyle, knitr, readxl, edgeR, limma, EDASeq, statmod
jsonlite, readr, rhdf5, splines, Biobase, AnnotationDbi,
SummarizedExperiment, org.Hs.eg.db
knitr, rmarkdown, testthat, BiocStyle, QuasR, Rbowtie,
Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg38, ensembldb
clusterProfiler, dplyr, ggupset, knitr, org.Hs.eg.db,
prettydoc, tibble, tidyr
testthat, roxygen2, knitr, Biobase, SummarizedExperiment,
antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle,
minfi
BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, testthat,
webshot
testthat, knitr, rmarkdown, BiocStyle, flowVS, DepecheR
testthat, flowWorkspaceData (>= 2.23.2), knitr, ggcyto,
parallel, CytoML, openCyto
BiocGenerics, reactome.db, RUnit, GO.db, mgsa
pathview, gageData, org.Hs.eg.db, hgu133a.db, GSEABase,
Rsamtools, GenomicAlignments,
TxDb.Hsapiens.UCSC.hg19.knownGene, DESeq, DESeq2, edgeR, limma
parallel, digest, Matrix, RUnit, knitr, crayon, BiocGenerics
vsn, BSgenome.Hsapiens.UCSC.hg19, Homo.sapiens,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Mmusculus.UCSC.mm9.knownGene, knitr, BiocStyle, testthat,
EnsDb.Hsapiens.v75, tinytex
testthat (>= 2.1.0), zoo, DESeq2, edgeR, beachmat, MASS,
statmod, ggplot2, bench, BiocParallel, knitr, rmarkdown,
BiocStyle, TENxPBMCData
vsn, golubEsets, KEGGREST, hu6800.db, Rgraphviz, GO.db,
lungExpression, org.Hs.eg.db, GSEABase, penalized, gss, MASS,
boot, rpart, mstate
testthat, knitr, rmarkdown, pasillaBamSubset, BiocStyle,
BiocManager
DO.db, DT, knitr, RBGL, RUnit, snpStats, Gviz,
VariantAnnotation, AnnotationHub, gQTLstats, graph, ggbio,
DelayedArray, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db,
BiocStyle
testthat, BiocStyle, knitr, rmarkdown, scRNAseq, scater,
DelayedArray, RColorBrewer, viridis, htmltools
scRNAseq, scater, scran, airway, edgeR, AnnotationDbi,
org.Hs.eg.db, GO.db, knitr, rmarkdown, BiocStyle, htmltools,
Rtsne, uwot, testthat (>= 2.1.0)
knitr, rmarkdown, BSgenome, Biostrings, NMF, mclust,
berryFunctions
biomaRt (>= 2.34.1), httr (>= 1.2.1), IRanges (>= 2.8.2),
knitr, testthat, readr, rmarkdown
annotate, BiocGenerics, biomformat, knitr, gss, testthat (>=
0.8), vegan, interactiveDisplay, IHW
BiocGenerics, BiocManager, BSgenome, knitr, RMySQL, RUnit
testthat (>= 2.1.0), knitr, rmarkdown, genomation,
BiocManager
BiocStyle, bsseqData, knitr, rmarkdown, testthat (>= 2.1.0),
covr
BiocStyle, edgeR, knitr, minfiData, rmarkdown,
tweeDEseqCountData
knitr, devtools, rmarkdown, BiocGenerics, RUnit, epiNEM
BiocStyle, knitr, testthat, specL (>= 1.2)
BiocStyle, dplyr, DropletUtils, knitr, GEOquery, Matrix,
matrixStats, methods, muscat, rmarkdown, R.utils, readxl,
scater, scds, Seurat
BiocStyle, countsimQC, cowplot, ExperimentHub, iCOBRA, knitr,
phylogram, RColorBrewer, reshape2, rmarkdown, testthat, UpSetR
curatedTCGAData, TCGAutils, rmarkdown, testthat, knitr
paxtoolsr, BiocStyle, org.Hs.eg.db, knitr, rmarkdown,
testthat, cgdsr
hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
pd.genomewidesnp.5, pd.mapping50k.hind240,
pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6),
RUnit, human370v1cCrlmm, VanillaICE, crlmm
BSgenome.Hsapiens.UCSC.hg18, hapmap100kxba, pd.hg.u95av2,
pd.mapping50k.xba240, pd.huex.1.0.st.v2, pd.hg18.60mer.expr,
pd.hugene.1.0.st.v1, maqcExpression4plex, genefilter, limma,
RColorBrewer, oligoData, BiocStyle, knitr, RUnit, biomaRt,
AnnotationDbi, ACME, RCurl
knitr, org.Hs.eg.db, org.Mm.eg.db, testthat, BiocStyle,
SingleCellExperiment, SingleR
testthat, rmarkdown, pRolocdata (>= 1.9.4), roxygen2,
synapter, xtable, rgl, BiocStyle (>= 2.5.19), hpar (>= 1.15.3),
dplyr, akima, fields, vegan, GO.db, AnnotationDbi, Rtsne (>=
0.13), nipals, reshape
biomartr, knitr, rmarkdown, testthat, dendextend, biocViews,
BiocCheck, BiocStyle
testthat, knitr, BiocStyle, rmarkdown, RColorBrewer, foreach,
doSNOW, parallel, org.Hs.eg.db, clusterProfiler
testthat, covr, knitr, rmarkdown, BiocStyle, gridExtra,
magick
airway, biomaRt, BiocFileCache, broom, Seurat,
SingleCellExperiment, DESeq2, knitr, readr, readxl, pheatmap,
tibble, testthat (>= 2.1.0)
BiocStyle, gridExtra, grid, testthat, devtools, knitr,
rmarkdown, ComplexHeatmap
Biostrings, methods, knitr, rmarkdown, BiocStyle
knitr, BiocParallel, lme4, rmarkdown, BiocStyle, testthat (>=
2.1.0), limma, sva
knitr, RColorBrewer, sqldf, BiocGenerics, testthat,
BiocStyle, jsonlite, heatmaply, glmnet, foreach, doSNOW,
parallel
knitr, rmarkdown, testthat (>= 2.1.0), here
AnnotationDbi, BiocManager, BiocStyle (>= 2.5.19), DESeq2,
sessioninfo, EnsDb.Hsapiens.v79, GenomicFeatures,
knitcitations, knitr (>= 1.6), org.Hs.eg.db, RefManageR,
regionReport (>= 1.9.4), rmarkdown (>= 0.9.5), testthat (>=
2.1.0), covr, pheatmap
BiocManager, biovizBase, bumphunter (>= 1.7.6), derfinderPlot
(>= 1.3.2), sessioninfo, DT, DESeq, edgeR, ggbio (>= 1.35.2),
ggplot2, grid, gridExtra, IRanges, mgcv, pasilla, pheatmap,
RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene, whisker
R4RNA, treeio, knitr, BiocStyle, rmarkdown, BiocGenerics
RUnit, BiocStyle, knitr, BSgenome.Drerio.UCSC.danRer10,
edgeR, limma, testthat
knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0),
shinydashboard, DT, plotly, heatmaply, magrittr, utils,
clusterProfiler, DOSE, slam, org.Ag.eg.db, org.At.tair.db,
org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db,
org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db,
org.Hs.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db,
org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db,
org.Xl.eg.db
knitr, BiocStyle, rmarkdown, tinytest, doFuture
testthat, knitr, rmarkdown, BiocStyle, SingleCellExperiment,
SummarizedExperiment, scRNAseq, cowplot
knitr, rmarkdown, scater, scattermore, scales, matrixStats,
deldir
testthat (>= 2.1.0), covr, knitr, rmarkdown, BiocStyle,
Matrix, ggplot2, ggpubr, splatter, SingleCellExperiment,
microbenchmark
BiocStyle, AnnotationHub, AnnotationDbi, GenomicFeatures,
knitr, rmarkdown, BiocFileCache, testthat
BiocStyle, BiocFileCache, biomaRt, beachmat, cowplot,
destiny, knitr, scRNAseq, robustbase, rmarkdown, Rtsne, uwot,
NMF, testthat, pheatmap, Biobase, limma, DropletUtils
testthat, BiocStyle, knitr, beachmat, HDF5Array, scRNAseq,
dynamicTreeCut, DESeq2, monocle, Biobase, pheatmap
BiocGenerics, knitr, testthat, covr, rmarkdown, ggplot2,
DuoClustering2018
knitr, rmarkdown, testthat, BiocStyle, ggplot2, dplyr, tidyr
scales, knitr, rmarkdown, testthat, minfi,
FlowSorted.CordBloodNorway.450k, FlowSorted.Blood.450k, dplyr,
tidyr, BiocStyle
BiocManager, bit64, covr, knitcitations, knitr (>= 1.6),
JunctionSeq, devtools, BiocStyle (>= 2.5.19), rmarkdown (>=
0.9.5), testthat (>= 2.1.0)
testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle
knitr, rmarkdown, BiocStyle, knitcitations, testthat (>=
2.1.0), covr, here, BiocManager
BiocStyle, covr, cowplot, knitr, limSolve, lme4, progress,
pscl, testthat, rmarkdown, scDD, scran, mfa, phenopath, BASiCS
(>= 1.7.10), zinbwave, SparseDC, BiocManager, spelling, igraph,
DropletUtils, BiocSingular
BiocStyle, knitr, rmarkdown, tools, spqnData (>= 0.99.3),
RUnit
agricolae, BiocFileCache, BiocStyle, car, covr, cowplot,
e1071, emmeans, ggdendro, knitr, magick, nlme, openxlsx, pls,
pmp, reshape2, ropls, rmarkdown, Rtsne, testthat
testthat, rstudioapi, rmarkdown, covr, BiocStyle, openxlsx,
ggplot2, magick
BiocGenerics, ape, RUnit, BiocStyle, knitr, rmarkdown,
biomaRt, BiocParallel, BiocManager, systemPipeRdata,
GenomicAlignments
testthat, AnnotationDbi, BiocManager, Rsubread, e1071, edgeR,
limma, org.Hs.eg.db, sva, GGally, knitr, qpdf, covr, Seurat,
KernSmooth, Rtsne, EGSEA, SummarizedExperiment, S4Vectors,
ggplot2, widyr, clusterProfiler, msigdbr
BiocStyle, knitr, rmarkdown, testthat, snow, tidyverse,
igraph, gplots
knitr, rmarkdown, cowplot, tidyr, testthat, covr
Biostrings, ggplot2, ggtree, igraph, knitr, phangorn,
prettydoc, testthat, tidyr, vroom, xml2
knitr, rmarkdown, tidyverse, airway, edgeR, topconfects,
EnsDb.Hsapiens.v86, org.Sc.sgd.db, AnnotationDbi, testthat (>=
2.1.0)
BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata (>=
0.25.1), ncdf4, rgl, microbenchmark, testthat, pander,
magrittr, multtest, MALDIquant, pheatmap
knitr, microbiome, tidyverse, testthat, DT, magrittr, qwraps2
(>= 0.5.0)
DT (>= 0.5), testthat (>= 2.0.0), plotly (>= 4.7.1),
ChemoSpec, knitr
knitr, rmarkdown, testthat, withr, readr
RUnit, knitr, BiocStyle, grasp2db, GenomeInfoDbData,
rmarkdown
IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation,
Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge,
rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR,
Biostrings, SummarizedExperiment, ExperimentHub, gdsfmt,
rmarkdown
testthat, knitr, rmarkdown, igraph, spatialLIBD, dplyr,
viridis, patchwork, RColorBrewer, Seurat
reactome.db, org.Hs.eg.db, WGCNA, GOSemSim, testthat, knitr,
rmarkdown, BiocStyle, airway, DESeq2, boot,
targetscan.Hs.eg.db, Hmisc, spelling
Biobase, S4Vectors, IRanges, GenomicRanges, DelayedArray,
Biostrings, Rsamtools, AnnotationDbi, affy, affyPLM, DESeq2,
flowClust, MSnbase, annotate, RUnit
BiocStyle, knitr, rmarkdown, testthat, tm, SnowballC,
visNetwork, clipr, blastula, kableExtra, DiagrammeR,
SummarizedExperiment
testthat, BiocStyle, knitr, rmarkdown, ResidualMatrix
BiocStyle, ComplexHeatmap, fastcluster, heatmaply, knitr,
plotly
BiocStyle, diffcyt, flowWorkspace, ggcyto, knitr, openCyto,
rmarkdown, testthat, uwot
flowWorkspace (>= 3.33.1), flowCore, ncdfFlow, shiny,
testthat, devtools, flowWorkspaceData, ggplot2, doMC, progress
BiocStyle, knitr, rmarkdown, testthat, limma, Rtsne
testthat, readr, knitr, rmarkdown, ggplot2, BiocStyle,
ggdendro, broom, lme4, RColorBrewer, SingleCellExperiment,
scater, broom.mixed, cowplot
BSgenome, limma, reactome.db, BiocManager, BiocStyle,
BSgenome.Ecoli.NCBI.20080805, BSgenome.Hsapiens.UCSC.hg19,
org.Ce.eg.db, org.Hs.eg.db, BSgenome.Celegans.UCSC.ce10,
BSgenome.Drerio.UCSC.danRer7, BSgenome.Hsapiens.UCSC.hg38,
DelayedArray, idr, seqinr, EnsDb.Hsapiens.v75,
EnsDb.Hsapiens.v79, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, GO.db, gplots, UpSetR,
knitr, rmarkdown, testthat, trackViewer, motifStack,
OrganismDbi
ChemmineR, BiocStyle, knitr, knitrBootstrap, BiocManager
RSQLite, scatterplot3d, gplots, fmcsR, snow, RPostgreSQL,
BiocStyle, knitr, knitcitations, knitrBootstrap, ChemmineDrugs,
png,rmarkdown, BiocManager
knitr, rmarkdown, DT, mclust, scater, ExPosition, BiocStyle,
pkgdown
testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff,
fastcluster, dendextend (>= 1.0.1), grImport, grImport2, glue,
GenomicRanges, gridtext, pheatmap (>= 1.0.12), shiny
pander, BiocStyle, rmarkdown, knitr, formatR, testthat
testthat, knitr, rmarkdown, vsn, pheatmap, RColorBrewer,
apeglm, ashr, tximport, tximeta, tximportData, readr, pbapply,
airway, pasilla (>= 0.2.10), glmGamPoi, BiocManager
BiocParallel, HDF5Array (>= 1.17.12), genefilter,
SummarizedExperiment, airway, pryr, DelayedMatrixStats, knitr,
BiocStyle, RUnit
uwot, testthat, knitr, rmarkdown, BiocStyle
BiocStyle, knitr, rmarkdown, testthat, DropletUtils
testthat, knitr, BiocStyle, rmarkdown, jsonlite,
DropletTestFiles
BiocStyle, knitr, yeastRNASeq, leeBamViews, edgeR,
KernSmooth, testthat, DESeq2
RUnit, BiocGenerics, knitr, DESeq2, pasilla, airway,
org.Hs.eg.db, gridExtra, magrittr
ALL, BiocStyle, ComplexHeatmap, DESeq2, ReportingTools,
airway, biocGraph, hgu95av2.db, geneplotter, knitr, msigdbr,
rmarkdown
BiocStyle, knitr, rmarkdown, testthat, httptest,
AnnotationHub, ensembldb, ggplot2, EpiTxDb.Hs.hg38,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Scerevisiae.UCSC.sacCer3,
TxDb.Hsapiens.UCSC.hg38.knownGene
GenomeInfoDb, RUnit, knitr, BiocStyle, rmarkdown
BiocStyle, knitr, rmarkdown, testthat, covr, stats, scran,
scater, scds, TENxPBMCData
knitr, rmarkdown, BiocGenerics, sva, BiocManager
testthat, knitr, rmarkdown, BiocStyle, GCSConnection
CompQuadForm, COMPoissonReg, poibin, SPAtest, survey,
testthat, BiocStyle, knitr, rmarkdown, GWASdata, dplyr,
ggplot2, GGally, RColorBrewer,
TxDb.Hsapiens.UCSC.hg19.knownGene
knitr, rmarkdown, BiocStyle, clusterProfiler, testthat
RUnit, limma, RColorBrewer, genefilter, edgeR, GSVAdata,
shiny, shinythemes, ggplot2, data.table, plotly
knitr, rmarkdown, ggplot2, BiocStyle, genefu, survcomp,
Biobase, survminer, breastCancerTRANSBIG, breastCancerUPP,
iC10TrainingData, pamr, testthat
BiocStyle, knitr, rmarkdown, formatR, rrBLUP, qqman
RMariaDB, org.Mm.eg.db, org.Hs.eg.db, BSgenome,
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce11, BSgenome.Dmelanogaster.UCSC.dm3
(>= 1.3.17), mirbase.db, FDb.UCSC.tRNAs,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Celegans.UCSC.ce11.ensGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1),
TxDb.Mmusculus.UCSC.mm10.knownGene (>= 3.4.7),
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,
TxDb.Hsapiens.UCSC.hg38.knownGene (>= 3.4.6),
SNPlocs.Hsapiens.dbSNP144.GRCh38, Rsamtools, pasillaBamSubset
(>= 0.0.5), GenomicAlignments (>= 1.15.7), ensembldb, RUnit,
BiocStyle, knitr
testthat, knitr, rmarkdown, BiocStyle, IRanges,
GenomicRanges, pryr
BiocStyle, knitr, rmarkdown, stringr, testthat
knitr, rmarkdown, BiocStyle, scran (>= 1.11.4), BiocSingular,
scater, scuttle, Rtsne, igraph, iSEE, testthat
BiocStyle, knitr, HCABrowser, LoomExperiment (>= 1.5.3),
readr
parallel, knitr, gdsfmt, SNPRelate, ggplot2, reshape2
EDASeq, testthat, knitr, rmarkdown, BiocStyle
BiocStyle, testthat, knitr, rmarkdown, seqCNA
testthat, covr, knitr, BiocStyle, knitcitations, sessioninfo,
rmarkdown, roxygen2, vegan, withr
biomaRt, BiocStyle, DOSE, dendextend, graphics, knitr,
msigdbr, pheatmap, png, pathview, scales, sva, testthat,
BiocStyle, breastCancerMAINZ, breastCancerNKI,
breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP,
breastCancerVDX, knitr, mGSZ, MIGSAdata, RUnit
knitr, testthat, Seurat, ggpubr, foreach, psych,
MultiAssayExperiment, SummarizedExperiment,
SingleCellExperiment, ggrastr
RUnit, BiocGenerics, BiocStyle, knitr, testthat (>= 2.1.0)
BiocStyle, knitr, rmarkdown, testthat (>= 1.0.2)
knitr, rmarkdown, testthat (>= 2.1.0), BiocStyle
BiocStyle, knitr, rmarkdown, testthat, MSstats, covr
sparseMatrixStats, DelayedMatrixStats, SummarizedExperiment,
testthat (>= 2.1.0)
shiny, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19 (>=
1.4.0), org.Hs.eg.db, clusterProfiler,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocGenerics, graphics (>= 3.5), grDevices (>= 3.5), knitr
(>= 1.11), methods (>= 3.5), stats (>= 3.5), testthat (>=
2.2.1)
knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2),
UpSetR
rmarkdown, BiocStyle, testthat (>= 2.1.0), parallel,
downloader, R.utils, doParallel, reshape2, JASPAR2020,
TFBSTools, motifmatchr, matrixStats, biomaRt, dorothea, viper,
stageR, BiocFileCache, png, htmltools, knitr, jpeg
BiocFileCache, BiocStyle, data.table, knitr, rmarkdown
DT, rmarkdown, prettydoc, treeio, tidyverse, testthat, knitr,
nlme, phangorn, DECIPHER, randomForest, biomformat, scales,
yaml
BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.0), BiocStyle (>= 2.0.3),
TxDb.Hsapiens.UCSC.hg19.knownGene (>= 3.2.2), biomaRt (>=
2.28.0), gridExtra (>= 2.2.1), rtracklayer (>= 1.32.2), ccfindR
(>= 1.6.0), GenomicFeatures, AnnotationDbi, testthat, knitr,
rmarkdown
DSS, Mus.musculus, Homo.sapiens, knitr, rmarkdown
knitr, bambu, ggbio, BSgenome.Hsapiens.NCBI.GRCh38, circlize,
ComplexHeatmap, apeglm, rlang, GenomicAlignments, Rsamtools
testthat, BiocStyle, knitr, rmarkdown, covr, scater, scran,
DropletUtils, igraph, BiocFileCache
testthat, rmarkdown, splatter, mclust, Rtsne, ggplot2, Rcpp,
BiocStyle, knitr
testthat, rmarkdown, knitr, BiocStyle,
BSgenome.Hsapiens.UCSC.hg19
knitr, rmarkdown, BiocStyle, magick, testthat
dnet, gprofiler2, BiocStyle, testthat, knitr, rmarkdown,
ggplot2, ggraph
Homo.sapiens, Rattus.norvegicus, BSgenome.Hsapiens.UCSC.hg19,
AnnotationHub, FDb.UCSC.tRNAs, mirbase.db, rtracklayer,
biomaRt, RUnit, RMariaDB
testthat, scran, BiocGenerics, knitr, Biobase, GEOquery,
hgu133a.db, ggplotify, beachmat, RMTstat, ggalt
BiocStyle, covr, tidyverse, testthat (>= 2.3.2)
MotifDb, BSgenome, BSgenome.Dmelanogaster.UCSC.dm3,
PWMEnrich.Dmelanogaster.background, testthat, gtools, parallel,
PWMEnrich.Hsapiens.background, PWMEnrich.Mmusculus.background,
BiocStyle, knitr
pander, rmarkdown, knitr, knitcitations, crayon, testthat,
BiocGenerics
testthat, knitr, GGally, network, reshape2, ClueR, directPA,
ggplot2, ggpubr
BiocParallel, BiocStyle, PSCBS,
TxDb.Hsapiens.UCSC.hg19.knownGene, copynumber, covr, knitr,
optparse, org.Hs.eg.db, jsonlite, rmarkdown, testthat
SingleCellExperiment, msdata, ggplot2, gplots, dplyr, limma,
magrittr, DT, shiny, shinydashboard, testthat, knitr,
BiocStyle, rmarkdown, vsn, preprocessCore, matrixStats,
imputeLCMD, pcaMethods, impute, norm
BiocStyle,gplots,RMassBankData, xcms (>= 1.37.1), CAMERA,
RUnit, knitr
BiocStyle, knitr, rmarkdown, testthat, MultiAssayExperiment
GEOquery, rmarkdown, knitr, BiocManager, testthat
RUnit, BiocGenerics, knitr, DESeq2, airway, magrittr,
Biobase, GEOquery, biomaRt, survminer, survey
testthat, BiocStyle, knitr, rmarkdown, BiocSingular
AnnotationDbi, rpx (>= 1.16.1), DT, knitr, rmarkdown,
BiocStyle, mzR, xcms, msdata, isobar, MALDIquant (>= 1.12),
MALDIquantForeign, readBrukerFlexData, synapter, synapterdata,
Rdisop, OrgMassSpecR, SummarizedExperiment, BRAIN, rols, hpar,
GO.db, org.Hs.eg.db, e1071, biomaRt, RColorBrewer, ggplot2,
reshape2, xtable, lattice, mzID, pRoloc, pRolocdata, MSnID,
msmsTests, msmsEDA, DEP, corrplot, beanplot, Heatplus, gplots,
VennDiagram, protViz, genefilter, plotly, gridExtra, dplyr,
lubridate, magick, cleaver
Category, GOstats, Gviz,
IlluminaHumanMethylation450kmanifest, RPMM, RefFreeEWAS,
RnBeads.hg19, RnBeads.mm9, XML, annotate, biomaRt, foreach,
doParallel, ggbio, isva, mclust, mgcv, minfi, nlme,
org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, quadprog,
rtracklayer, qvalue, sva, wateRmelon, wordcloud, qvalue,
argparse, glmnet, GLAD,
IlluminaHumanMethylation450kanno.ilmn12.hg19, scales,
missMethyl, impute, shiny, shinyjs, plotrix, hexbin, RUnit,
MethylSeekR
parallel, crayon, RUnit, knitr, markdown, rmarkdown,
BiocGenerics, SNPRelate
knitr, rmarkdown, LSD, testthat, BiocStyle
testthat, edgeR, BiocStyle, knitr, rmarkdown
testthat, BiocStyle, knitr, rmarkdown, Matrix, scRNAseq,
Rtsne
testthat, knitr, rmarkdown, BiocStyle, BiocGenerics,
SingleCellExperiment, scuttle, scater, scran, scRNAseq,
ggplot2, pheatmap, grDevices, gridExtra, viridis, celldex
BiocGenerics, BSgenome.Hsapiens.1000genomes.hs37d5,
BiocStyle, testthat, knitr,
testthat, knitr (>= 1.1.0), msdata (>= 0.19.3), roxygen2,
BiocStyle (>= 2.5.19), mzR (>= 2.19.6), rhdf5 (>= 2.32.0),
rmarkdown, vdiffr, magrittr
HDF5Array (>= 1.7.5), annotate, AnnotationDbi, hgu95av2.db,
GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene, jsonlite,
rhdf5, airway, BiocStyle, knitr, rmarkdown, RUnit, testthat,
digest
BiocStyle, knitr, rmarkdown, microbenchmark, testthat, covr,
pheatmap, rGREAT, SpectralTAD
jpeg, png, BiocStyle, rmarkdown, devtools, maftools,
parmigene, c3net, minet, dnet, Biobase, affy, testthat, sesame,
pathview, clusterProfiler, ComplexHeatmap, circlize,
ConsensusClusterPlus, igraph, supraHex, limma, edgeR, sva,
EDASeq, survminer, genefilter, gridExtra, survival, doParallel,
parallel, ggrepel (>= 0.6.3), scales, grid
BiocFileCache, BiocStyle, curatedTCGAData, ComplexHeatmap,
devtools, dplyr, IlluminaHumanMethylation450kanno.ilmn12.hg19,
impute, knitr, magrittr, mirbase.db, org.Hs.eg.db,
RColorBrewer, readr, rmarkdown, RTCGAToolbox (>= 2.17.4),
rtracklayer, R.utils, testthat,
TxDb.Hsapiens.UCSC.hg18.knownGene,
TxDb.Hsapiens.UCSC.hg19.knownGene
knitr, testthat, beachmat, scuttle, scran, BiocParallel,
BiocNeighbors, batchelor
knitr, Matrix, rmarkdown, BiocStyle, BiocParallel, testthat
BiocManager, kableExtra, knitr (>= 1.27), org.Hs.eg.db,
org.Mm.eg.db, testthat, rmarkdown
rmarkdown, testthat, BiocStyle, knitr, tinytex, devtools,
PharmacoGx, xtable
knitr, rmarkdown, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
tidyr, testthat
GenomicFeatures, TxDb.Scerevisiae.UCSC.sacCer3.sgdGene,
testthat, covr, knitr, rmarkdown, pkgdown
BiocStyle, magick, knitr, rmarkdown, testthat, BiocGenerics,
DESeq2, magrittr, dplyr, ggplot2, cowplot, ggtext,
RColorBrewer, pheatmap, viridis
AnnotationDbi, Biostrings, BiocFileCache, ggplot2,
ComplexHeatmap, circlize, ggbio, gridExtra, knitr, rmarkdown,
testthat, BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Hsapiens.UCSC.hg38.knownGene, ExperimentHub (>= 1.15.3),
DESeq2, NanoporeRNASeq, BSgenome, apeglm, utils, DEXSeq
testthat, BiocStyle, knitr, rmarkdown, scran, scater,
bluster, scRNAseq
testthat, BiocStyle, knitr, rmarkdown, rcmdcheck,
BiocParallel
BiocStyle, covr, devtools, knitr, pkgdown, RefManageR,
rmarkdown, sessioninfo, testthat, utils
annotate, BiocStyle, knitr, rmarkdown, testthat, mockery
knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut,
scRNAseq, scuttle, scater, scran, pheatmap, viridis
BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo,
testthat (>= 2.1.0), covr
testthat, knitr, rmarkdown, BiocStyle, DT
scales, ggpubr, knitr (>= 1.23), rmarkdown (>= 1.14),
devtools (>= 2.3.0), BiocStyle, testthat
testthat, knitr, roxygen2, rmarkdown, devtools, gridExtra,
ggpubr, VennDiagram, BSgenome.Mmusculus.UCSC.mm9,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
BiocManager,
BiocStyle, knitr, testthat, MAST, Rtsne, scran, igraph
clustifyr, Seurat, usethis, rmarkdown, knitr, tidyr,
BiocStyle
genefilter, mvtnorm, testthat (>= 0.3), samr, pamr, kohonen,
NMF, WGCNA, Rtsne, umap, clusterProfiler, ReactomePA, DOSE,
AnnotationDbi, gplots, hu6800.db, BiocManager, data.tree,
dendextend
BiocStyle, EBSeq, DESeq2 (>= 1.1.31), baySeq (>= 2.2.0),
genefilter, NOISeq, TCC, NBPSeq (>= 0.3.0), rmarkdown, testthat
ade4, BiocStyle, CellBench, DuoClustering2018, knitr,
testthat
knitr, rmarkdown, lydata, org.Hs.eg.db, testthat
ncdfFlow, testthat, rmarkdown, knitr, edgeR, limma, glmnet,
BiocStyle, flowStats
XML, grImport, grImport2, BiocStyle, knitr, rmarkdown,
testthat
BiocStyle, covr, testthat, GenomicState, ggplot2, ggpubr,
ggrepel, grid, knitcitations, knitr, recount, rmarkdown,
sessioninfo, rtracklayer, tibble
testthat, rmarkdown, BiocStyle, knitr, R.rsp
knitr, rmarkdown, BiocStyle, ggplot2, Rtsne, uwot, testthat
sessioninfo, knitr (>= 1.6), RefManageR, rmarkdown (>=
0.3.3), BiocStyle
sessioninfo, knitr (>= 1.6), BiocStyle (>= 2.5.19),
RefManageR, rmarkdown (>= 0.3.3), testthat, covr
biovizBase (>= 1.27.2), bumphunter (>= 1.7.6), derfinderData
(>= 0.99.0), sessioninfo, knitr (>= 1.6), BiocStyle (>=
2.5.19), org.Hs.eg.db, RefManageR, rmarkdown (>= 0.3.3),
testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, covr
BiocStyle (>= 2.5.19), sessioninfo, derfinderData (>=
0.99.0), derfinderPlot, DESeq2, ggplot2, knitr (>= 1.6), limma,
RefManageR, rmarkdown (>= 0.3.3), testthat (>= 2.1.0),
TxDb.Hsapiens.UCSC.hg19.knownGene, covr
testthat, knitr, rmarkdown, ggplot2, ggsci, igraphdata,
BiocStyle, reshape2, utils
plotly, testthat, Seurat (>= 2.2), DESeq2, ggplot.multistats,
knitr, rmarkdown, BiocStyle, scRNAseq, ggrastr (>= 0.2.0),
ComplexHeatmap
Biobase, BiocStyle, knitr, pheatmap, pkgdown, rmarkdown,
Seurat, SingleCellExperiment, SummarizedExperiment, testthat
(>= 2.1.0), tibble, tidyr, utils
clusterProfiler, dplyr, europepmc, ggupset, knitr,
org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi,
ggplotify, ggridges, grDevices, gridExtra, ggnewscale, ggrepel
BiocStyle, knitr, EnsDb.Hsapiens.v86 (>= 0.99.8), testthat,
BSgenome.Hsapiens.NCBI.GRCh38, ggbio (>= 1.24.0), Gviz (>=
1.20.0), magrittr, rmarkdown, AnnotationHub
Seurat, SeuratObject, knitr, rmarkdown, BiocStyle, testthat,
dittoSeq (>= 1.1.2)
BiocStyle, knitr, rmarkdown, testthat, BiocManager
testthat, knitr, rmarkdown, macrophage, tximeta,
org.Hs.eg.db, samr, DESeq2, apeglm, tximportData,
SingleCellExperiment
testthat, knitr, rmarkdown, BiocStyle, DepecheR
knitr, rmarkdown, flowViz, ggplot2, BiocGenerics, stats,
flowClust, openCyto, flowStats, ggcyto
geuvStore2, knitr, rmarkdown, BiocStyle, RUnit, Homo.sapiens,
IRanges, erma, GenomeInfoDb, gwascat, geuvPack
pathview, gageData, org.Hs.eg.db, hgu133a.db, GSEABase,
Rsamtools, GenomicAlignments,
TxDb.Hsapiens.UCSC.hg19.knownGene, DESeq2, edgeR, limma
class, hgu95av2.db, tkWidgets, ALL, ROC, RColorBrewer,
BiocStyle, knitr
ggtree, treeio, ggstar, patchwork, knitr, rmarkdown,
prettydoc, markdown
emojifont, ggimage, ggplotify, grDevices, knitr, prettydoc,
rmarkdown, stats, testthat, tibble
testthat (>= 2.1.0), zoo, DESeq2, edgeR, limma, beachmat,
MASS, statmod, ggplot2, bench, BiocParallel, knitr, rmarkdown,
BiocStyle, TENxPBMCData, scran
SummarizedExperiment, knitr, plotly, RANKS, WGCNA, rmarkdown
DO.db, DT, knitr, RBGL, testthat, Gviz, AnnotationHub,
Rsamtools, IRanges, graph, ggbio, DelayedArray,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, BiocStyle
testthat, BiocStyle, knitr, rmarkdown, scRNAseq,
TENxPBMCData, scater, DelayedArray, HDF5Array, RColorBrewer,
viridis, htmltools
scRNAseq, scater, scran, airway, edgeR, AnnotationDbi,
org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown,
BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr
knitr, rmarkdown, msa, ape, testthat, seqinr
knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071
knitr, rmarkdown, curatedMetagenomicData, BiocStyle,
testthat, pkgdown, covr, withr
knitr, rmarkdown, BiocStyle, testthat, covr
testthat, knitr, rmarkdown, fgsea, BiocManager
covr, knitr, BiocStyle, sessioninfo, rmarkdown, rtracklayer,
derfinder, GenomeInfoDb, tools, RefManageR, testthat
magrittr, graphite, dplyr, tidyr, tibble, rappdirs, XML,
readxl, stringr, utils, knitr
BiocStyle, covr, knitr, rmarkdown, testthat
BiocManager, BSgenome, knitr, RMySQL, RUnit
knitr, rmarkdown, DSS, bsseq, plotly,
BSgenome.Mmusculus.UCSC.mm9, MafDb.1Kgenomes.phase3.GRCh38,
MafDb.1Kgenomes.phase3.hs37d5, GenomicScores, Biostrings,
RColorBrewer, GenomeInfoDb, testthat (>= 2.1.0)
BiocStyle, edgeR, knitr, minfiData, rmarkdown,
tweeDEseqCountData, DMRcate, ExperimentHub
grImport, grImport2, BiocGenerics, MotifDb, RColorBrewer,
BiocStyle, knitr
BiocStyle, knitr, rmarkdown, ComplexHeatmap, imputeLCMD
xcms (>= 3.11.8), CAMERA, Risa (>= 1.0.0), knitr, Heatplus,
pcaMethods, sp
org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Ss.eg.db,
org.Bt.eg.db, org.Ce.eg.db, org.Dm.eg.db, org.Dr.eg.db,
org.Gg.eg.db, org.Xl.eg.db, org.Cf.eg.db, metaboliteIDmapping,
knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0)
AnnotationHub, BiocStyle, BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Mmusculus.UCSC.mm10,
BSgenome.Scerevisiae.UCSC.sacCer1, ensembldb, IRanges, knitr,
magick, rmarkdown, testthat, TxDb.Mmusculus.UCSC.mm10.knownGene
testthat, BiocStyle, knitr, rmarkdown, survival, XVector,
qpdf, covr
knitr, BiocStyle, rmarkdown, RUnit, BiocGenerics
BiocStyle, testthat, knitr, rmarkdown, lintr, styler,
LaplacesDemon, grplasso
BiocStyle, Cairo, knitr, testthat, truncnorm
knitr, org.Hs.eg.db, org.Mm.eg.db, testthat, BiocStyle,
SingleCellExperiment, celldex
testthat, BiocStyle, knitr, rmarkdown, KEGGREST, missMDA,
ggplot2, ggrepel, car, cowplot
bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, TFBSTools,
GenomicFeatures, annotate
RUnit, sandwich, MASS, knitr, GenomeInfoDb, GenomicRanges,
gwascat, BiocStyle
BSgenome.Scerevisiae.UCSC.sacCer3,
BSgenome.Celegans.UCSC.ce11, BSgenome.Dmelanogaster.UCSC.dm6,
BSgenome.Drerio.UCSC.danRer10, BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Mmusculus.UCSC.mm10, reticulate, testthat, covr,
knitr, rmarkdown, pkgdown
knitr, rmarkdown, testthat, BiocCheck, BiocManager, BiocStyle
testthat, mockery, BSgenome, BiocManager,
BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown, DEXSeq, Rtsne,
ggplot2, tidyr, vdiffr
BiocStyle, testthat, knitr, rmarkdown, png, Rsamtools
airway, biomaRt, BiocFileCache, broom, Seurat,
SingleCellExperiment, DESeq2, BiocStyle, knitr, readr, readxl,
pheatmap, tibble, testthat (>= 2.1.0)
gridExtra, knitr, qPLEXdata, testthat, UniProt.ws, vdiffr
Rgraphviz, RCurl, graph, RUnit, BiocGenerics, RBGL, igraph
knitr, BiocParallel, lme4, nlme, rmarkdown, BiocStyle,
testthat (>= 2.1.0), limma, sva
BiocStyle, covr, knitcitations, knitr, RefManageR, rmarkdown,
testthat, pryr, interactiveDisplayBase, recount
AnnotationDbi, BiocManager, BiocStyle (>= 2.5.19), DESeq2,
sessioninfo, EnsDb.Hsapiens.v79, GenomicFeatures, knitr (>=
1.6), org.Hs.eg.db, RefManageR, regionReport (>= 1.9.4),
rmarkdown (>= 0.9.5), testthat (>= 2.1.0), covr, pheatmap
knitr, testthat, ggplot2, gridExtra, rmarkdown, BiocStyle,
GenomicRanges, limma, ExperimentHub, AnnotationHub
grid, BiocStyle, knitr, rmarkdown, zoo, RUnit, BiocManager,
BSgenome, RMySQL
BiocManager, biovizBase, bumphunter (>= 1.7.6), derfinderPlot
(>= 1.3.2), sessioninfo, DT, edgeR, ggbio (>= 1.35.2), ggplot2,
grid, gridExtra, IRanges, mgcv, pasilla, pheatmap,
RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene, whisker
testthat (>= 2.1.0), KernSmooth, beachmat, knitr, BiocStyle,
rmarkdown
PCAtools, cowplot, BiocGenerics, knitr, kableExtra
BiocStyle, knitr, rmarkdown, testthat, scRNAseq, bluster
DelayedMatrixStats, sparseMatrixStats, testthat (>= 2.1.0),
covr, knitr, rmarkdown, BiocStyle, ggplot2, ggpubr, splatter,
SingleCellExperiment, microbenchmark
BiocStyle, knitr, rmarkdown, BiocFileCache, testthat
knitr, rmarkdown, BiocStyle, scater, circlize, scales
testthat, LRBase.Hsa.eg.db, LRBase.Mmu.eg.db, LRBaseDbi,
Seurat, scTGIF, Homo.sapiens
BiocStyle, biomaRt, cowplot, destiny, knitr, scRNAseq,
robustbase, rmarkdown, Rtsne, uwot, NMF, testthat, pheatmap,
Biobase
testthat, knitr, BiocStyle, rmarkdown, patchwork, ggplot2,
matrixStats, impute, scater, sva, uwot
testthat, BiocStyle, knitr, rmarkdown, HDF5Array, scRNAseq,
dynamicTreeCut, DESeq2, monocle, Biobase, pheatmap, scater
BiocGenerics, covr, DuoClustering2018, ggplot2, knitr,
rmarkdown, TENxPBMCData, testthat
BiocStyle, knitr, scRNAseq, rmarkdown, testthat
scales, knitr, rmarkdown, testthat, dplyr, tidyr, BiocStyle,
IlluminaHumanMethylation450kmanifest, minfi,
FlowSorted.CordBloodNorway.450k, FlowSorted.Blood.450k,
HDF5Array
knitr, ggplot2, cowplot, mclust, apcluster, MCL, dbscan,
igraph, gridExtra, dynamicTreeCut, testthat, gridGraphics,
clusterProfiler, msigdbr, DOSE, DO.db, reactome.db, flexclust,
BiocManager
testthat, Rsubread, BiocStyle, knitr, lintr, bladderbatch,
xtable, spelling, org.Mm.eg.db, stringr
BiocGenerics, BiocStyle, clusterExperiment, knitr, mclust,
RColorBrewer, rgl, rmarkdown, testthat, uwot, covr
knitr, rmarkdown, scRNAseq, BiocStyle, scater, scran,
scuttle, ggplot2, testthat
knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, data.table,
ExpressionAtlas, DT, reshape2, Biobase, GEOquery, shinyWidgets
knitr, RefManageR, rmarkdown, BiocStyle, testthat (>= 2.1.0),
covr, here, BiocManager
BiocStyle, covr, cowplot, magick, knitr, limSolve, lme4,
progress, pscl, testthat, preprocessCore, rmarkdown, scDD,
scran, mfa, phenopath, BASiCS (>= 1.7.10), zinbwave, SparseDC,
BiocManager, spelling, igraph, scuttle, BiocSingular,
VariantAnnotation, Biostrings, GenomeInfoDb, GenomicRanges,
IRanges
BiocGenerics, ape, RUnit, BiocStyle, knitr, rmarkdown,
biomaRt, BiocParallel, BiocManager, systemPipeRdata,
GenomicAlignments, grid
testthat, BiocStyle, knitr, rmarkdown, systemPipeR,
systemPipeRdata, networkD3, rhandsontable, zip, callr, pushbar,
fs, openssl, readr, R.utils, DOT, shinyTree, DESeq2,
SummarizedExperiment, glmpca, pheatmap, grid, ape, ggtree,
Rtsne, UpSetR, tidyr, esquisse, cicerone
BiocStyle, testthat, knitr, markdown, SingleCellSignalR,
SingleR, scater, scran, tidyHeatmap, igraph, GGally, Matrix,
uwot, celldex, dittoSeq
BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva,
GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne,
S4Vectors, ggplot2, widyr, clusterProfiler, msigdbr, DESeq2,
broom, survival, boot, betareg, tidyHeatmap, pasilla, ggrepel,
devtools, functional
testthat (>= 1.0.0), knitr, rmarkdown, covr, BiocStyle
limma, edgeR, statmod, DESeq2, ashr, NBPSeq, dplyr, testthat,
reshape2, tidyr, readr, org.At.tair.db, AnnotationDbi, knitr,
rmarkdown, BiocStyle
knitr, rmarkdown, testthat, covr, clusterExperiment
testthat, roxygen2, knitr, BiocStyle, rmarkdown
Biostrings, ggplot2, ggtree, igraph, knitr, rmarkdown,
phangorn, prettydoc, testthat, tidyr, vroom, xml2, yaml
RUnit, plyr, knitr, BiocGenerics, rmarkdown,
BSgenome.Scerevisiae.UCSC.sacCer3,
BSgenome.Athaliana.TAIR.TAIR9
BiocStyle, knitr, testthat, rmarkdown, dplyr
spelling, knitr, bookdown, TFBSTools, rmarkdown, MotifDb,
testthat, Logolas, BiocParallel, seqLogo, motifStack, dplyr,
ape, ggtree, processx
BiocStyle, testthat, knitr, rmarkdown, scran, scater,
scRNAseq, ggplot2, Rtsne
knitr, rmarkdown, BiocStyle, tidyverse, airway, edgeR,
EnsDb.Hsapiens.v86, org.Sc.sgd.db, AnnotationDbi,
ComplexHeatmap, patchwork, testthat (>= 2.1.0)
MSnbase, testthat, BiocStyle, knitr, rmarkdown
covr, spelling, testthat, knitr, rmarkdown, BiocStyle,
scRNAseq, HDF5Array, rhdf5
BiocStyle, knitr, AnnotationHub (>= 2.7.13), rmarkdown
BiocStyle, magrittr, dplyr, tibble, knitr, rmarkdown
knitr, tidyverse, testthat, DT, magrittr, qwraps2 (>= 0.5.0),
rmarkdown
knitr, rmarkdown, BiocStyle, org.Mm.eg.db, AnnotationDbi,
TBX20BamSubset, testthat, pasillaBamSubset
BiocStyle, knitr, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, phastCons100way.UCSC.hg19,
MotifDb, trackViewer, testthat, rmarkdown
Biobase, BiocStyle, doSNOW, dynamicTreeCut, DT, GEOquery,
knitr, NMF, plyr, R2HTML, rmarkdown, reshape2, plotly, rbokeh,
Rtsne, testthat, zoo
hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db, RUnit,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, reactome.db,
AnnotationForge, graph, EnsDb.Hsapiens.v75, BiocStyle, knitr
biomaRt, httr, GenomeInfoDb (>= 1.17.1), Biostrings, affy,
hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens, GO.db,
markdown, BiocStyle, knitr, BiocManager, BiocFileCache
knitr, BiocStyle, testthat, rmarkdown, markdown
knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle, covr
testthat, knitr, rmarkdown, lattice, latticeExtra,
rbenchmark, gplots, gridExtra, org.Hs.eg.db, hgu133plus2.db,
ggplot2, reshape2, plyr, ineq, covr, limma, RColorBrewer
knitr, dbplyr, org.Hs.eg.db, MultiAssayExperiment, BiocStyle,
ontoProc, ontologyPlot, pogos, GenomeInfoDb, restfulSE (>=
1.3.7), BiocFileCache, TxDb.Hsapiens.UCSC.hg19.knownGene,
Biobase, TxDb.Hsapiens.UCSC.hg18.knownGene, reshape2, testthat,
AnnotationDbi, FDb.InfiniumMethylation.hg19,
EnsDb.Hsapiens.v75, rmarkdown, rhdf5client
testthat, restfulSE, HDF5Array, BiocStyle, rmarkdown
RUnit, devtools, BiocGenerics, knitr, rmarkdown
BiocStyle, knitr, rmarkdown, testthat, webshot
knitr, testthat, ReactomePA, RUnit, BiocGenerics,
AnnotationHub, rtracklayer, pd.genomewidesnp.6, org.Hs.eg.db,
biovizBase, TxDb.Hsapiens.UCSC.hg18.knownGene, methods,
Biostrings,Homo.sapiens, R.utils
VariantAnnotation, DelayedArray, knitr, biomaRt, evobiR,
rmarkdown, devtools, cowplot, usethis, scales, testthat,
GenomicRanges, cn.mops, R.utils
flowWorkspace (>= 3.33.1), flowCore, ncdfFlow, shiny,
testthat, devtools, flowWorkspaceData, ggplot2, progress
BiocStyle, knitr, rmarkdown, tidyr, ggplot2, gridExtra,
magick, Cairo, limma
EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6),
hgu95av2.db, KEGGREST, karyoploteR, geneplotter, limma,
lattice, RUnit, org.Sc.sgd.db, GOstats, GO.db
knitr, rmarkdown, BiocStyle, testthat, tidyverse, ggpubr,
destiny, ggrepel
AnnotationHub, BSgenome, limma, reactome.db, BiocManager,
BiocStyle, BSgenome.Ecoli.NCBI.20080805,
BSgenome.Hsapiens.UCSC.hg19, org.Ce.eg.db, org.Hs.eg.db,
BSgenome.Celegans.UCSC.ce10, BSgenome.Drerio.UCSC.danRer7,
BSgenome.Hsapiens.UCSC.hg38, DelayedArray, idr, seqinr,
EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v79,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, GO.db, gplots, UpSetR,
knitr, rmarkdown, testthat, trackViewer, motifStack,
OrganismDbi
ChemmineR, BiocStyle, knitr, knitrBootstrap, BiocManager,
rmarkdown
testthat, knitr, markdown, rmarkdown, BiocStyle, Signac,
future
testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff,
fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport,
grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12),
gridGraphics, gplots
pander, markdown, BiocStyle, rmarkdown, knitr, formatR,
testthat
knitr, akima, lattice, scales, gridExtra, latticeExtra,
rmarkdown, BiocStyle, BiocParallel, testthat (>= 2.1.0)
prettydoc, clusterProfiler, knitr, rmarkdown, org.Hs.eg.db,
testthat
BiocParallel, HDF5Array (>= 1.17.12), genefilter,
SummarizedExperiment, airway, lobstr, DelayedMatrixStats,
knitr, rmarkdown, BiocStyle, RUnit
testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark,
profmem, HDF5Array
testthat, knitr, BiocStyle, rmarkdown, Matrix
uwot, reshape2, testthat, knitr, rmarkdown, BiocStyle
BiocStyle, knitr, yeastRNASeq, leeBamViews, edgeR,
KernSmooth, testthat, DESeq2, rmarkdown
devtools, knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0),
data.table, sctransform, readxl, SingleCellExperiment, memoise,
markdown
RUnit, BiocGenerics, knitr, DESeq2, pasilla, airway,
org.Hs.eg.db, gridExtra, magrittr, rmarkdown
BiocStyle, knitr, rmarkdown, testthat, covr, stats, scran,
scater, scds, TENxPBMCData, airway
rmarkdown, Seurat, ggpubr, knitr, testthat (>= 3.0.0),
BiocStyle
RCurl, gage, topGO, GO.db, reactome.db, RUnit, BiocGenerics,
org.Sc.sgd.db, knitr, rmarkdown, AnnotationDbi, RGtk2,
BiocManager
BiocCheck, roxygen2, knitr, rmarkdown, testthat
AnnotationHub, BiocManager, clusterProfiler, DOSE, knitr,
rmarkdown, org.Hs.eg.db, prettydoc, testthat
ExperimentHub (>= 0.99.6), knitr, BiocStyle, rmarkdown
BiocGenerics, RUnit, BiocStyle, knitr, rmarkdown, limma,
RColorBrewer, org.Hs.eg.db, genefilter, edgeR, GSVAdata, shiny,
shinydashboard, ggplot2, data.table, plotly, future, promises,
shinybusy, shinyjs
apcluster, GEOquery, knitr, rmarkdown, BiocStyle
RUnit, BiocGenerics, RBGL, knitr, simpIntLists, shiny,
STRINGdb, BiocStyle, magick, rmarkdown
AnnotationFilter, rtracklayer, testthat, knitr, BiocStyle,
rmarkdown
Matrix, Biobase, AnnotationDbi, annotate, Biostrings (>=
2.25.3), SummarizedExperiment (>= 0.1.5), Rsamtools (>=
1.13.53), GenomicAlignments, rtracklayer, BSgenome,
GenomicFeatures, Gviz, VariantAnnotation, AnnotationHub,
DESeq2, DEXSeq, edgeR, KEGGgraph, RNAseqData.HNRNPC.bam.chr14,
pasillaBamSubset, KEGGREST, hgu95av2.db, hgu95av2probe,
BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm10,
TxDb.Athaliana.BioMart.plantsmart22,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, RUnit, digest, knitr,
rmarkdown, BiocStyle
RUnit, BiocStyle, knitr, rmarkdown,
BSgenome.Hsapiens.UCSC.hg19, phastCons100way.UCSC.hg19,
MafDb.1Kgenomes.phase1.hs37d5,
SNPlocs.Hsapiens.dbSNP144.GRCh37, VariantAnnotation,
TxDb.Hsapiens.UCSC.hg19.knownGene, gwascat, RColorBrewer,
shiny, shinyjs, shinycustomloader, data.table, DT, magrittr,
shinydashboard
knitr, rmarkdown, devtools, roxygen2, pkgdown, usethis,
BiocStyle, testthat, forcats, stats, wordcloud, circlize,
EnrichmentBrowser, clusterProfiler, msigdbr, cluster,
RColorBrewer, reshape2, tibble, BiocManager, bcellViper, readr,
utils
GO.db, golubEsets, hu6800.db, vsn, Rgraphviz
BSgenome.Hsapiens.UCSC.hg19, xml2, BiocStyle, knitr,
rmarkdown, testthat
BiocStyle, knitr, rmarkdown, Rtsne, umap, ggplot2, FlowSOM,
mclust
BiocParallel, GenomicRanges, SummarizedExperiment (>=
1.15.1), h5vcData, ExperimentHub, TENxBrainData, zellkonverter,
GenomicFeatures, RUnit, SingleCellExperiment
BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0)
parallel, ggplot2, reshape2, gdsfmt, SNPRelate, SeqArray,
knitr, markdown, rmarkdown
Biobase, BiocCheck, BiocManager, BiocStyle, circlize, covr,
cowplot, dendextend, devtools, ggplot2, gridExtra, haven,
phyloseq, rmarkdown, roxygen2, stats, testthat, tidyr
knitr, BiocManager, qpdf, hpar, testthat
knitr, rmarkdown, markdown, devtools, BiocStyle
BSgenome.Mmusculus.UCSC.mm9, BSgenome.Mmusculus.UCSC.mm10,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38,
RUnit, BiocGenerics, knitr, rmarkdown, HiTC, DESeq2, Matrix,
BiocFileCache, rappdirs
AnnotationHubData, ExperimentHubData, testthat, knitr,
rmarkdown, BiocStyle,
knitr, BiocStyle, beeswarm, tximportData, DT, tximport,
dplyr, magrittr, BiocFileCache, testthat, rhdf5client,
rmarkdown
testthat, RColorBrewer, wesanderson, scales, gridExtra,
BiocStyle, knitr, rmarkdown, airway, locfdr, tidyr, ggbio,
latex2exp
testthat, covr, knitr, BiocStyle, knitcitations, sessioninfo,
rmarkdown, roxygen2, vegan, withr, extraDistr
RUnit, BiocGenerics, BiocManager, rtracklayer, BiocStyle,
knitr, markdown, rmarkdown, EnsDb.Hsapiens.v86,
EnsDb.Mmusculus.v79, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm10,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene
testthat (>= 3.0.0), knitr, rmarkdown, glue, graphite,
processx, attempt, BiocStyle, igraph
knitr, rmarkdown, testthat, EnrichedHeatmap, GenomicRanges,
data.table, circlize, GenomicFeatures, tidyverse, tidyHeatmap,
cluster, org.Hs.eg.db, simplifyEnrichment, GO.db, SC3,
GOexpress, SingleCellExperiment, scater, gplots, pheatmap,
airway, DESeq2, DT, cola, BiocManager, gridtext, HilbertCurve
(>= 1.21.1), shinydashboard, SummarizedExperiment, pkgndep, ks
RDAVIDWebService, gProfileR, topGO, org.Dm.eg.db, rmarkdown,
testthat
RBGL, testthat, RColorBrewer, org.Hs.eg.db, hgu133plus2.db,
SPIA
LRcell, BiocStyle, knitr, rmarkdown, roxygen2, testthat
LRcellTypeMarkers, BiocStyle, knitr, rmarkdown, roxygen2,
testthat
testthat, BiocStyle, knitr, rmarkdown, reticulate
testthat, knitr, rmarkdown, BiocStyle, MACSdata
gridExtra, VennDiagram, qqman, LOLA, RUnit, rmutil,
rmarkdown, JASPAR2018, TFBSTools, seqLogo, knitr, devtools,
BiocGenerics, BiocManager
GO.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
org.Cf.eg.db, KEGGREST, annotate, Rgraphviz, GOstats, graph,
limma, mouse4302.db, reactome.db
knitr, testthat, Seurat, ggpubr, foreach, psych,
MultiAssayExperiment, SummarizedExperiment,
SingleCellExperiment, ggrastr, mvtnorm, GGally, rmarkdown,
data.table, tidyverse, BiocStyle, Matrix
BiocStyle, knitr, rmarkdown, covr, tinytest, dplyr
BiocStyle, knitr, rmarkdown, tinytest, covr
BiocStyle, knitr, rmarkdown, MSstatsBioData, tinytest, covr,
markdown
rmarkdown, BiocStyle, testthat (>= 2.1.0), parallel,
downloader, R.utils, doParallel, reshape2, JASPAR2020,
TFBSTools, motifmatchr, matrixStats, biomaRt, dorothea, viper,
stageR, BiocFileCache, png, htmltools, knitr, jpeg, sesame,
BSgenome.Hsapiens.UCSC.hg38
rmarkdown, prettydoc, testthat, knitr, nlme, phangorn,
picante, plyr, DECIPHER, randomForest, biomformat, scales,
yaml, withr, S4Vectors, purrr, seqmagick, glue, corrr, ggupset,
ggVennDiagram, gghalves, ggalluvial, forcats, pillar, cli,
phyloseq, aplot, ggnewscale, ggside, ggtreeExtra
testthat, knitr, rmarkdown, dplyr, shinycssloaders, shiny,
shinyFiles, shinydashboard, shinyjs
testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19),
RSQLite, rmarkdown
testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19),
rmarkdown
testthat, roxygen2, BiocStyle, pheatmap, knitr, rmarkdown
BiocStyle, HDF5Array (>= 1.19.17), knitr, maftools (>=
2.7.10), rmarkdown, R.rsp, RaggedExperiment, UpSetR, survival,
survminer, testthat
SNPlocs.Hsapiens.dbSNP144.GRCh37,
SNPlocs.Hsapiens.dbSNP144.GRCh38,
BSgenome.Hsapiens.1000genomes.hs37d5,
BSgenome.Hsapiens.NCBI.GRCh38, methods, BiocGenerics, IRanges,
GenomeInfoDb, S4Vectors, rmarkdown, markdown, knitr, testthat
(>= 3.0.0), UpSetR, BiocStyle, covr
RUnit, BiocStyle, knitr, BSgenome.Mmusculus.UCSC.mm10,
testthat, BiocManager, rmarkdown
DSS, Mus.musculus, Homo.sapiens, knitr, rmarkdown, testthat
(>= 3.0.0), covr
biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf
knitr, bambu, ggbio, BSgenome.Hsapiens.NCBI.GRCh38, circlize,
ComplexHeatmap, apeglm, rlang, rmarkdown, GenomicAlignments,
Rsamtools
testthat, BiocStyle, knitr, rmarkdown, covr, scater, scran,
DropletUtils, igraph, BiocFileCache, SeuratObject
RUnit, BiocGenerics, org.Sc.sgd.db, org.Hs.eg.db,
org.Mm.eg.db, org.Rn.eg.db, org.Dr.eg.db, org.Ce.eg.db,
org.Cf.eg.db, org.Dm.eg.db, org.At.tair.db, rmarkdown, knitr,
markdown
knitr, rmarkdown, BiocManager, GenomicFeatures, S4Vectors,
devtools, testthat
BiocStyle, dnet, ggplot2, ggraph, gprofiler2, knitr, mlrMBO,
parallelMap, ParamHelpers, rmarkdown, smoof, testthat
testthat, scran, BiocGenerics, knitr, Biobase, GEOquery,
hgu133a.db, ggplotify, beachmat, RMTstat, ggalt, DESeq2,
airway, org.Hs.eg.db, magrittr, rmarkdown
testthat (>= 3.0.0), msigdbr, BiocStyle, rmarkdown, knitr,
HDF5Array
Biobase, BiocStyle, covr, plotly, tidyverse, testthat (>=
2.3.2)
rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle
BiocStyle, testthat, knitr, rmarkdown, covr, dplyr, readr
pander, rmarkdown, knitr, knitcitations, crayon, testthat,
markdown
testthat, knitr, rgl, sna, ClueR, directPA, rmarkdown,
org.Rn.eg.db, org.Mm.eg.db, reactome.db, annotate, BiocStyle,
stringr, calibrate
foreach, doParallel, BiocStyle, knitr, rmarkdown, png,
GGally, gridExtra, ggforce, fgsea, RColorBrewer, ggpubr,
rtracklayer, ggbio, Gviz, data.tree, jsonlite
org.Hs.eg.db (>= 3.7.0), org.Mm.eg.db (>= 3.7.0), biomaRt (>=
2.30.0), knitr, AnnotationDbi, energy
SingleCellExperiment, HDF5Array, msdata, ggplot2, gplots,
dplyr, limma, magrittr, DT, shiny, shinydashboard, testthat,
knitr, BiocStyle, rmarkdown, vsn, preprocessCore, matrixStats,
imputeLCMD, pcaMethods, impute, norm
Gviz, BiocStyle, GenomicAlignments, Rhisat2, knitr,
rmarkdown, covr, testthat
rmarkdown, BiocStyle, knitr, pander, markdown
testthat, parallel, BiocStyle, knitr, rmarkdown
Biobase, BiocStyle, BiocParallel, doParallel, DT, foreach,
gplots, rtracklayer, igraph, knitr,
RcisTarget.hg19.motifDBs.cisbpOnly.500bp, rmarkdown, testthat,
visNetwork
knitr, rmarkdown, testthat, stringr, networkD3, visNetwork,
wesanderson
BiocStyle, clusterProfiler, knitr, rmarkdown, org.Hs.eg.db,
prettydoc, testthat
RUnit, BiocGenerics, knitr, DESeq2, airway, magrittr,
Biobase, GEOquery, biomaRt, survminer, survey, rmarkdown
RUnit, ALL, hgu95av2.db, org.Mm.eg.db, shiny, pasilla,
org.Sc.sgd.db, rmarkdown
AnnotationDbi, rpx (>= 2.0.3), DT, knitr, rmarkdown,
BiocStyle, mzR, xcms, msdata, isobar, MALDIquant (>= 1.12),
MALDIquantForeign, readBrukerFlexData, Rdisop, OrgMassSpecR,
SummarizedExperiment, BRAIN, rols, hpar, GO.db, org.Hs.eg.db,
e1071, biomaRt, RColorBrewer, ggplot2, reshape2, xtable,
lattice, mzID, pRoloc, pRolocdata, MSnID, msmsTests, msmsEDA,
DEP, corrplot, beanplot, Heatplus, gplots, VennDiagram,
protViz, genefilter, plotly, gridExtra, dplyr, lubridate,
magick, cleaver
BiocStyle, knitr, rmarkdown, tinytest, mockery
Category, GOstats, Gviz,
IlluminaHumanMethylation450kmanifest, RPMM, RefFreeEWAS,
RnBeads.hg19, RnBeads.mm9, XML, annotate, biomaRt, foreach,
doParallel, ggbio, isva, mclust, mgcv, minfi, nlme,
org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, quadprog,
rtracklayer, qvalue, sva, wateRmelon, wordcloud, qvalue,
argparse, glmnet, GLAD,
IlluminaHumanMethylation450kanno.ilmn12.hg19, scales,
missMethyl, impute, shiny, shinyjs, plotrix, hexbin, RUnit,
MethylSeekR, sesame
org.Hs.eg.db, org.Mm.eg.db, org.Dm.eg.db, org.Rn.eg.db,
org.Sc.sgd.db, Rgraphviz, ppiStats, ScISI, testthat
GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,
BSgenome.Hsapiens.UCSC.hg19, RUnit, BiocStyle
knitr, BiocStyle, TPP, testthat, rmarkdown
RUnit, BiocGenerics, knitr, formatR, org.Sc.sgd.db, BioNet,
DLBCL, msm
Matrix, DelayedMatrixStats, scater, uwot, RUnit, knitr,
markdown, rmarkdown
BiocStyle, knitr, rmarkdown, ggplot2, pheatmap
BiocStyle, optparse, testthat, knitr, rmarkdown, tidyverse,
ggpubr
parallel, Matrix, RUnit, knitr, rmarkdown, MASS, BiocGenerics
BiocStyle, covr, devtools, dplyr, knitr, magick, rmarkdown,
testthat
Biobase, BiocGenerics, BiocParallel, RUnit, Rcpp, SNPRelate,
digest, crayon, knitr, markdown, rmarkdown, Rsamtools,
VariantAnnotation
testthat (>= 3.0.0), edgeR, BiocStyle, knitr, rmarkdown
BiocStyle, ggplot2, knitr, RaggedExperiment, rmarkdown,
scater, scran, UpSetR, uwot
BSgenome.Mmusculus.UCSC.mm10, devtools, ExperimentHub, knitr,
parallel, rmarkdown, readr, SingleMoleculeFootprintingData,
testthat (>= 3.0.0)
knitr, rmarkdown, testthat, BiocStyle, BumpyMatrix
ggplot2, devtools, testthat (>= 2.1.0), roxygen2, rmarkdown,
tidyverse, knitr, ggbio, biovizBase,
TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
BiocStyle, knitr, markdown, rtracklayer, igraph, rmarkdown
testthat, spelling, lintr, covr, knitr, rmarkdown, BiocStyle,
shiny, circlize, caret, dplyr, plyr, impute, sva, glmnet,
randomForest, MASS, class, e1071, pROC, HGNChelper
knitr, data.table, testthat, AnnotationDbi, AnnotationFilter,
Biobase, GenomicFeatures, GenomicRanges, Gviz, IRanges,
S4Vectors, org.Hs.eg.db, EnsDb.Hsapiens.v75, BiocParallel,
BiocStyle, GO.db, GenomicFiles, GenomeInfoDb,
SummarizedExperiment, UpSetR, ggplot2, png, gwascat, MotifDb,
motifStack, RColorBrewer, rmarkdown
knitr, testthat, scuttle, scran, metapod, BiocParallel,
BiocNeighbors, batchelor
rmarkdown, testthat, BiocStyle, knitr, tinytex, devtools,
PharmacoGx, xtable, markdown
knitr, rmarkdown, BiocGenerics, RUnit, BiocStyle
BiocNeighbors, DelayedArray, DelayedMatrixStats,
BiocParallel, testthat, knitr, BiocStyle, rmarkdown
testthat, BiocStyle, knitr, rmarkdown, inline, parallel
knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr,
geneplast, ggtree, ggplot2, dplyr, dendextend, RColorBrewer
BiocStyle, knitr, rmarkdown, markdown, testthat,
BSgenome.Hsapiens.UCSC.hg38, pander
knitr, rmarkdown, roxygen2 (>= 6.0.0), testthat (>= 3.0.0),
gplots
hgu95av2.db, genefilter, Biostrings (>= 2.25.10), IRanges,
rae230a.db, rae230aprobe, tkWidgets, GO.db, org.Hs.eg.db,
org.Mm.eg.db, humanCHRLOC, Rgraphviz, RUnit,
BiocStyle, ComplexHeatmap, factoextra, FactoMineR, gProfileR,
knitr, PerformanceAnalytics, org.Mm.eg.db, rmarkdown, testthat
affy, AnnotationDbi, BiocManager, diagram, GenomicRanges,
GEOquery, hgu95av2.db, ICSNP, knitr, lme4, lmerTest, MASS,
mixOmics, mpm, nlme, org.Hs.eg.db, org.Mm.eg.db, RCurl,
remotes, rmarkdown, ropls, Rsubread, rtracklayer, seqinr,
statmod, testthat
airway, ggplot2, testthat, EDASeq, knitr, BiocStyle,
RefManageR, sessioninfo, rmarkdown
BiocStyle, knitr, magick, rmarkdown, testthat
testthat, BiocStyle, knitr, rmarkdown, rcmdcheck,
BiocParallel, HDF5Array
BiocStyle, prettydoc, rmarkdown, knitr, testthat (>= 0.10.0)
BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr,
rmarkdown, covr, xml2, git2r
BiocStyle, knitr, rmarkdown, testthat, mockery
testthat, knitr, rmarkdown, BiocStyle, arm, earth, ranger,
SuperLearner, Matrix, DBI, biotmleData (>= 1.1.1)
knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut,
scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans,
kohonen, apcluster
BiocStyle, knitr, survival, survminer, rmarkdown, testthat
knitr, GO.db, KEGGREST, estrogen, org.Hs.eg.db, hgu95av2.db,
limma, affy, genefilter
knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0)
testthat, knitr, roxygen2, rmarkdown, biomaRt, covr,
BiocManager, BiocStyle, M3DExampleData, TENxPBMCData,
singleCellTK
knitr, rmarkdown, dplyr, ggplot2, RUnit, BiocGenerics,
BiocManager, kableExtra, rgl
BiocStyle, knitr, rmarkdown, testthat, ggplot2
BiocStyle, rmarkdown, knitr, RUnit, BiocGenerics (>= 0.1.0)
AnnotationHub, knitr, rmarkdown, org.Hs.eg.db, prettydoc,
ReactomePA, testthat
ComplexHeatmap, covr, knitr, rmarkdown, testthat, ggrepel,
BiocStyle, BiocManager, remotes, shiny, gprofiler2, purrr
genefilter, mvtnorm, testthat (>= 0.3), samr, pamr, kohonen,
NMF, WGCNA, Rtsne, umap, clusterProfiler, ReactomePA, DOSE,
AnnotationDbi, gplots, hu6800.db, BiocManager, data.tree,
dendextend, Polychrome, rmarkdown, simplifyEnrichment, cowplot,
flexclust
covr, testthat, knitr, Rcpp, rmarkdown, markdown
knitr, rmarkdown, BiocStyle, S4Vectors, matrixStats,
org.Hs.eg.db, org.Mm.eg.db, dynamicTreeCut, testthat
knitr, testthat, rmarkdown, covr, viridis, ggplot2,
RColorBrewer, randomForest, tidyr, TSCAN
Biobase, knitr, rmarkdown, testthat, BiocStyle
hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.7), snpStats, RUnit
knitr, rmarkdown, lydata, org.Hs.eg.db, testthat,
tximportData
AnnotationDbi, org.Mm.eg.db,
TxDb.Mmusculus.UCSC.mm10.knownGene, testthat, GenomicFeatures,
GenomicAlignments, knitr, BiocStyle, rmarkdown, BiocManager
BiocStyle, DT, knitr, mia, readr, rmarkdown, scater,
testthat, utils, uwot, vegan
magrittr, dplyr, purrr, knitr, stringr, rmarkdown, tidyr
BiocStyle, knitr, rmarkdown, markdown, testthat, shinytest
knitr, rmarkdown, testthat (>= 2.1.0), BiocStyle, formatR,
cowplot, dagitty, lmtest, sandwich, devtools, curatedTCGAData,
TCGAutils, SummarizedExperiment
BiocStyle, covr, knitr, pkgdown, RefManageR, rmarkdown,
roxygen2, sessioninfo, testthat
plotly, testthat, Seurat (>= 2.2), DESeq2, edgeR,
ggplot.multistats, knitr, rmarkdown, BiocStyle, scRNAseq,
ggrastr (>= 0.2.0), ComplexHeatmap, bluster, scater, scran
RUnit, BiocStyle, knitr, rmarkdown, ggplot2, reshape2, DT,
EnsDb.Hsapiens.v86
BiocStyle (>= 2.18.0), BSgenome (>= 1.58.0),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl, knitr,
rmarkdown, RUnit (>= 0.4.32)
distill, BiocStyle, knitr, readxl, edgeR, limma, EDASeq,
statmod
knitr, rmarkdown, testthat, BiocStyle, QuasR, Rbowtie,
Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg38, ensembldb,
AnnotationDbi, GenomicFeatures, rtracklayer
testthat (>= 3.0.0), stringr, plyr, prettydoc, BiocStyle,
Homo.sapiens, RColorBrewer, rmarkdown, BiocFileCache, knitr
clusterProfiler, dplyr, europepmc, ggupset, knitr, rmarkdown,
org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi,
ggplotify, ggridges, grDevices, gridExtra, ggnewscale, ggrepel
(>= 0.9.0), ggstar, treeio, scales, tidytree
testthat, knitr, rmarkdown, BiocStyle,
BSgenome.Rnorvegicus.UCSC.rn4, gcapc, chromstaRData
testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus,
TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown,
BiocStyle, EnsDb.Mmusculus.v79, AnnotationHub, rtracklayer,
utils, RMySQL, DBI, matrixStats
knitr, BiocStyle, ggplot2, cowplot, rmarkdown, markdown,
testthat (>= 3.0.0)
testthat (>= 2.1.0), devtools, BiocManager, TENxPBMCData,
scater, schex, gridExtra, scran, Seurat, knitr
biomaRt, tidyr, testthat, knitr, rmarkdown, devtools, covr
knitr, rmarkdown, GOstats, PerfMeas, GO.db, BiocGenerics
testthat, knitr, rmarkdown, macrophage, tximeta,
org.Hs.eg.db, samr, DESeq2, apeglm, tximportData,
SingleCellExperiment, limma
BiocStyle, covr, ggrepel, kableExtra, knitr,
metabolomicsWorkbenchR, POMA, rmarkdown, rvest,
SummarizedExperiment, testthat (>= 2.3.2), tidyverse
parallel, digest, Matrix, crayon, RUnit, knitr, markdown,
rmarkdown, BiocGenerics
GeneMeta, breastCancerVDX, breastCancerMAINZ,
breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT,
breastCancerNKI, rmeta, Biobase, xtable, knitr, caret,
survival, BiocStyle, magick, rmarkdown
BiocGenerics, genomationData, knitr, RColorBrewer, rmarkdown,
RUnit
devtools, knitr, rmarkdown, roxygen2, limma, topGO, testthat
(>= 3.0.0)
treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc,
markdown, testthat (>= 3.0.0)
testthat (>= 2.1.0), zoo, DESeq2, edgeR, limma, beachmat,
MASS, statmod, ggplot2, bench, BiocParallel, knitr, rmarkdown,
BiocStyle, TENxPBMCData, muscData, scran
DO.db, DT, knitr, RBGL, testthat, rmarkdown, Gviz, Rsamtools,
IRanges, rtracklayer, graph, ggbio, DelayedArray,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, BiocStyle
testthat (>= 3.0.0), knitr, rmarkdown, LoomExperiment,
BiocStyle
knitr, annotate, gwascat, testthat, rmarkdown
BiocStyle, knitr, rmarkdown, markdown, testthat
BiocGenerics, rmarkdown, BiocStyle, knitr, testthat, DT
knitr, png, limma, grid, DT, randomForest, digest, testthat,
rmarkdown
RUnit, knitr, BiocStyle, gwascat, rmarkdown
berryFunctions, Biostrings, BSgenome,
BSgenome.Hsapiens.UCSC.hg19, GenomicRanges, IRanges, knitr,
mclust, MultiAssayExperiment, NMF, R.utils, RaggedExperiment,
rmarkdown, S4Vectors, pheatmap, curl
beachmat, HDF5Array, Rhdf5lib, BiocStyle, TENxPBMCData,
scater, DelayedMatrixStats, bluster, knitr, testthat, rmarkdown
cowplot, BSgenome.Dmelanogaster.UCSC.dm3,
BSgenome.Dmelanogaster.UCSC.dm6, forcats, testthat (>= 2.1.0),
knitr, MotifDb, pheatmap, PMCMRplus, plyranges (>= 1.9.1),
rmarkdown, covr
knitr, rmarkdown, MeSH.Cel.eg.db, MeSH.Hsa.eg.db, prettydoc
magrittr, graphite, dplyr, tidyr, tibble, rappdirs, XML,
readxl, stringr, utils, knitr, sets, R.utils, readr,
conflicted, rmarkdown
BiocStyle, covr, knitr, HDF5Array, rmarkdown, structToolbox,
testthat, pmp, grid, png
scRNAseq, scater, biomaRt, BiocStyle, knitr, rmarkdown
BiocGenerics, RUnit, knitr, rtracklayer, utils, rmarkdown
knitr, rmarkdown, BiocStyle, testthat, patchwork,
microbiomeDataSets
testthat, knitr, patchwork, BiocStyle, yaml, phyloseq, dada2,
stringr, biomformat, reldist, ade4, microbiomeDataSets,
rmarkdown
BiocGenerics, BiocStyle, Cairo, knitr, rmarkdown, testthat
testthat, MASS, mvtnorm, scater, scran, covr, knitr,
rmarkdown, uwot, BiocStyle, MouseGastrulationData, magick,
RCurl, curl, graphics
BiocStyle, covr, future, igraph, knitr, Matrix, progeny,
rmarkdown, sctransform, SingleCellExperiment,
SpatialExperiment, SummarizedExperiment, testthat (>= 3.0.0)
testthat (>= 1.0.0), timecoursedata, knitr, rmarkdown, covr,
BiocStyle
grImport, grImport2, BiocGenerics, MotifDb, RColorBrewer,
BiocStyle, knitr, RUnit, rmarkdown
singscore, vissE, knitr, prettydoc, BiocStyle, rmarkdown,
testthat (>= 3.0.0), BiocFileCache, GO.db, stringr, limma
multcomp, gridExtra, knitr, BiocStyle, RefManageR,
sessioninfo, rmarkdown, testthat, tidyverse, plotly, msdata,
MSnbase, matrixStats, MsCoreUtils
xcms (>= 3.13.8), CAMERA, Risa (>= 1.0.0), knitr, Heatplus,
pcaMethods, sp, rmarkdown
org.Mm.eg.db, rlang, markdown, attempt, processx, testthat,
knitr, BiocStyle
testthat, knitr, BiocStyle, rmarkdown, scater, bluster,
DropletUtils, scRNAseq
msdata (>= 0.15.1), RUnit, mzID, BiocStyle (>= 2.5.19),
knitr, XML, rmarkdown
curatedTCGAData, TCGAutils, rmarkdown, testthat, knitr,
BiocStyle
knitr, org.Hs.eg.db, org.Mm.eg.db, testthat, BiocStyle,
SingleCellExperiment, celldex, rmarkdown
testthat, rmarkdown, pRolocdata (>= 1.9.4), roxygen2, xtable,
rgl, BiocStyle (>= 2.5.19), hpar (>= 1.15.3), dplyr, akima,
fields, vegan, GO.db, AnnotationDbi, Rtsne (>= 0.13), nipals,
reshape, magick
RUnit, sandwich, MASS, knitr, GenomeInfoDb, GenomicRanges,
gwascat, BiocStyle, rmarkdown
ggplot2, testthat, tidyr, scales, minfi, EpiDISH, knitr,
rmarkdown
knitr, DT, ontologyPlot, testthat, rmarkdown
testthat, rmarkdown, knitr, Rtsne, gridExtra
BiocStyle, testthat, knitr, rmarkdown, png
knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), ptairData,
ropls
gridExtra, knitr, qPLEXdata, rmarkdown, testthat, UniProt.ws,
vdiffr
affy, MSnbase, ggplot2, lattice, mzR, BiocStyle
AnnotationDbi, BiocStyle, dplyr, ExperimentHub, GEOquery,
knitr, macrophage, org.Hs.eg.db, reshape2, rmarkdown, testthat,
tibble
RUnit, knitr, rmarkdown, gridExtra, annotatr, LOLA,
org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle (>= 2.5), ExperimentHub, knitr, protViz (>= 0.6),
rmarkdown, tartare (>= 1.5), testthat
testthat, igraph, XML, BiocManager, RCurl, bookdown,
rappdirs, yaml, BiocParallel, OSCA.intro, OSCA.workflows
AnnotationDbi, BiocManager, BiocStyle (>= 2.5.19), DESeq2,
sessioninfo, EnsDb.Hsapiens.v79, GenomicFeatures, knitr (>=
1.6), org.Hs.eg.db, RefManageR, regionReport (>= 1.9.4),
rmarkdown (>= 0.9.5), testthat (>= 2.1.0), covr, pheatmap, DT,
edgeR, ggplot2, RColorBrewer
knitr, testthat, Rtsne, org.Mm.eg.db, org.Hs.eg.db,
BiocStyle, restfulSEData, rmarkdown
knitr, testthat, BiocStyle, DT, reticulate, rmarkdown
BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0), rhdf5 (>=
2.34.0)
RUnit, BiocStyle, knitr, BSgenome.Drerio.UCSC.danRer10,
edgeR, limma, testthat, rmarkdown
Biostrings, BiocStyle, testthat, knitr, rmarkdown
knitr, rmarkdown, testthat, covr, BiocStyle, AnnotationHub,
ensembldb, edgeR, DEXSeq, stageR, DelayedArray
PCAtools, cowplot, BiocGenerics, RUnit, knitr, kableExtra,
rmarkdown
BiocStyle, knitr, rmarkdown, testthat, scRNAseq, circlize,
ComplexHeatmap, ggplot2, dplyr, MASS, viridisLite
BiocStyle, knitr, rmarkdown, BiocFileCache, testthat,
rappdirs, tools
knitr, rmarkdown, BiocStyle, scater, circlize, scales, Seurat
BiocStyle, biomaRt, cowplot, destiny, knitr, scRNAseq,
robustbase, rmarkdown, uwot, NMF, testthat, pheatmap, snifter,
Biobase
BiocStyle, DT, ggplot2, knitr, miniUI, NMF, plotly, reshape2,
rmarkdown, scran, scRNAseq, shiny, testthat, visNetwork,
doParallel, BatchJobs, splatter, scater, kableExtra, mclust,
TENxPBMCData
testthat, knitr, BiocStyle, BiocCheck, rmarkdown, patchwork,
ggplot2, impute, scater, sva, preprocessCore, vsn, uwot
scp, magrittr, dplyr, knitr, BiocStyle, BiocCheck, rmarkdown,
testthat
testthat, BiocStyle, knitr, rmarkdown, HDF5Array, scRNAseq,
dynamicTreeCut, ResidualMatrix, ScaledMatrix, DESeq2, monocle,
Biobase, pheatmap, scater
BiocStyle, knitr, scRNAseq, rmarkdown, testthat, scran
emojifont, knitr, rmarkdown, prettydoc, tibble
knitr (>= 1.30.0), mCSEA (>= 1.10.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylation450kmanifest,
IlluminaHumanMethylationEPICanno.ilm10b4.hg19,
IlluminaHumanMethylationEPICmanifest, testthat, minfiData
knitr, testthat, rmarkdown, BiocStyle, org.Hs.eg.db,
signatureSearchData, DT
knitr, ggplot2, cowplot, mclust, apcluster, MCL, dbscan,
igraph, gridExtra, dynamicTreeCut, testthat, gridGraphics,
clusterProfiler, msigdbr, DOSE, DO.db, reactome.db, flexclust,
BiocManager, InteractiveComplexHeatmap (>= 0.99.11), shiny,
shinydashboard, cola, hu6800.db, rmarkdown
testthat, Rsubread, BiocStyle, knitr, lintr, xtable,
spelling, org.Mm.eg.db, stringr, kableExtra, shinythemes,
shinyBS, shinyjqui, shinyWidgets, shinyFiles, BiocGenerics
BiocStyle, devtools, knitr, magick, rmarkdown, testthat
BiocGenerics, BiocStyle, clusterExperiment, knitr, mclust,
mgcv, RColorBrewer, rgl, rmarkdown, testthat, uwot, covr
BiocManager, bit64, covr, knitcitations, knitr (>= 1.6),
devtools, BiocStyle (>= 2.5.19), rmarkdown (>= 0.9.5), testthat
(>= 2.1.0)
knitr, rmarkdown, scRNAseq, BiocStyle, scater, scran,
scuttle, ggplot2, testthat (>= 3.0.0)
knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics,
ExpressionAtlas, DT, reshape2, Biobase, GEOquery, shinyWidgets,
shinyjs, htmltools, shinyBS, sortable
knitr, RefManageR, rmarkdown, BiocStyle, testthat (>= 2.1.0),
covr, here, BiocManager, rtracklayer, pryr
BiocStyle, knitr, rmarkdown, assertthat, HD2013SGI
knitr, rmarkdown, testthat, BiocManager, BiocStyle
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38,
knitr, rmarkdown, ggplot2, testthat, VariantAnnotation
BiocGenerics, ape, BiocStyle, knitr, rmarkdown, biomaRt,
BiocParallel, BiocManager, systemPipeRdata, GenomicAlignments,
grid, DT, dplyr, kableExtra
testthat, BiocStyle, knitr, rmarkdown, systemPipeR,
systemPipeRdata, networkD3, rhandsontable, zip, callr, pushbar,
fs, readr, R.utils, DOT, shinyTree, DESeq2,
SummarizedExperiment, glmpca, pheatmap, grid, ape, ggtree,
Rtsne, UpSetR, tidyr, esquisse (>= 1.0.0), cicerone
systemPipeR, knitr, BiocStyle, rmarkdown, testthat (>=
3.0.0), BiocGenerics, Biostrings, methods
BiocStyle, testthat, knitr, markdown, SingleCellSignalR,
SingleR, scater, scran, tidyHeatmap, igraph, GGally, Matrix,
uwot, celldex, dittoSeq, EnsDb.Hsapiens.v86
BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva,
GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne,
S4Vectors, ggplot2, widyr, clusterProfiler, msigdbr, DESeq2,
broom, survival, boot, betareg, tidyHeatmap, pasilla, ggrepel,
devtools, functional, survminer, tidySummarizedExperiment,
markdown
biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit,
org.Hs.eg.db, BiocStyle, knitr, VariantAnnotation, httr,
htmltools, rmarkdown
knitr, rmarkdown, BiocStyle, CATALYST, testthat (>= 3.0.0)
testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, CircStats,
cowplot, htmltools, Seurat, org.Hs.eg.db, org.Mm.eg.db
fgsea, knitr, testthat, reticulate, rmarkdown
knitr, rmarkdown, testthat, tximportData,
TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), limma,
edgeR, DESeq2 (>= 1.11.6), rhdf5, jsonlite, matrixStats,
Matrix, fishpond
spelling, knitr, bookdown, TFBSTools, rmarkdown, MotifDb,
testthat, BiocParallel, seqLogo, motifStack, dplyr, ape,
ggtree, processx, ggseqlogo, cowplot, GenomicRanges, ggbio
BiocStyle, testthat, knitr, rmarkdown, pkgdown, scran,
scater, scRNAseq, Rtsne, graphics, grDevices, ggplot2, cowplot,
GGally, patchwork, metR
testthat, org.Hs.eg.db, org.Mm.eg.db, ggpubr, singscore,
knitr, rmarkdown, prettydoc, BiocStyle
BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata (>=
0.25.1), ncdf4, testthat, pander, magrittr, rmarkdown,
multtest, MALDIquant, pheatmap, Spectra (>= 1.1.17),
MsBackendMgf
covr, spelling, testthat, knitr, rmarkdown, BiocStyle,
scRNAseq, HDF5Array, rhdf5, BiocFileCache
knitr, rmarkdown, testthat, matrixStats, magrittr, scRNAseq,
ggplot2, biomaRt, BiocStyle, Rtsne, DESeq2
knitr, BiocStyle, BiocManager, testthat (>= 3.0.0)
parallel, knitr, rmarkdown, testthat, withr, readr, BiocStyle
BiocStyle, knitr, testthat, RSQLite, org.Hs.eg.db, rmarkdown
RUnit, knitr, BiocStyle, grasp2db, GenomeInfoDbData,
rmarkdown, HubPub
IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation,
Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge,
rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR,
Biostrings, SummarizedExperiment, ExperimentHub, gdsfmt,
rmarkdown, HubPub
testthat, BiocStyle, knitr, rmarkdown, dplyr,
GenomicAlignments, ComplexHeatmap, GenomeInfoDb, forcats,
scales
AnnotationDbi, AnnotationHub, BiocStyle, ExperimentHub,
depmap, knitr, rmarkdown
BiocStyle, ComplexHeatmap, fastcluster, heatmaply, knitr,
plotly, rmarkdown
BiocStyle, knitr, rmarkdown, sessioninfo, AnnotationHub
BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown
testthat, readr, knitr, rmarkdown, ggplot2, BiocStyle,
ggdendro, broom, lme4, RColorBrewer, SingleCellExperiment,
scater, broom.mixed, cowplot, igraph, ggraph
knitr, rmarkdown, BiocStyle, testthat, covr, UpSetR, scater,
scMerge, fgsea, escape, pheatmap, patchwork
RColorBrewer, gplots, BiocStyle, knitr, rmarkdown
BiocStyle, knitr, markdown, testthat (>= 3.0.0)
testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff,
fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport,
grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12),
gridGraphics, gplots, rmarkdown, Cairo
BiocStyle, knitr, rmarkdown, panelcn.mops,
BSgenome.Hsapiens.UCSC.hg19.masked, DNAcopy, testthat
testthat, flowWorkspaceData , knitr, rmarkdown, parallel
knitr, RUnit, BiocGenerics,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylationEPICanno.ilm10b4.hg19,
FlowSorted.Blood.EPIC, tissueTreg, DMRcatedata
markdown, rmarkdown, BiocStyle, knitr, testthat, magrittr,
dplyr, reticulate
testthat (>= 2.1.0), knitr, rmarkdown, BiocStyle, devtools,
ggplot2, gridExtra, ggpubr, grid
SummarizedExperiment, testthat, Biobase, survminer,
affycoretools, knitr, plotROC, prognosticROC, rmarkdown
testthat (>= 0.3), knitr, markdown, rmarkdown, genefilter,
RColorBrewer
GenomeInfoDb, RUnit, knitr, BiocStyle, rmarkdown, HubPub
BiocStyle, knitr, rmarkdown, markdown, BiocFileCache
BiocStyle, knitr, rmarkdown, sessioninfo, testthat (>=
3.0.0), TxDb.Athaliana.BioMart.plantsmart28
testthat, knitr, markdown, rmarkdown, BiocStyle, BiocManager
knitr, RUnit, testthat, BiocGenerics, rmarkdown, markdown
rmarkdown, knitr, usethis, testthat (>= 3.0.0)
knitr, rmarkdown, BiocGenerics, testthat, covr, markdown
AnnotationHub, BiocManager, clusterProfiler, DOSE, knitr,
rmarkdown, org.Hs.eg.db, prettydoc, testthat, ROCR
Homo.sapiens, BiocStyle, knitr, markdown, rmarkdown, testthat
ExperimentHub (>= 0.99.6), knitr, BiocStyle, rmarkdown,
SummarizedExperiment, SingleCellExperiment
ExperimentHub, BiocStyle, RefManageR, knitr, rmarkdown,
testthat, minfi, tibble, sessioninfo
BiocStyle, GSE62944, knitr, rappdirs, rmarkdown
GO.db, reactome.db, biomaRt, AnnotationDbi, org.Hs.eg.db,
org.Rn.eg.db, org.Mm.eg.db, org.Dm.eg.db, graph
BiocStyle, knitr, rmarkdown, DT, testthat, listviewer,
ggplot2, GenomicAlignments, Rsamtools, BiocParallel,
TxDb.Hsapiens.UCSC.hg38.knownGene, VariantAnnotation
knitr, rmarkdown, BiocStyle, sessioninfo, testthat (>=
2.1.0), glue, derfinderPlot, AnnotationHubData, RefManageR,
GenomicRanges, covr
testthat, knitr, BiocStyle, rmarkdown, covr
rmarkdown, knitr, testthat (>= 3.0.0), parallel, ggiraph
testthat, knitr, rmarkdown, BiocStyle, IRanges,
GenomicRanges, pryr, AnnotationHub, scRNAseq, scater, scran
Biobase, BiocCheck, BiocManager, BiocStyle, circlize,
cowplot, dendextend, devtools, ggplot2, gridExtra, haven,
phyloseq, rmarkdown, roxygen2, stats, testthat, tidyr
knitr, BiocManager, qpdf, hpar, testthat, rmarkdown
rmarkdown, colorspace, e1071, kernlab, ranger,
SummarizedExperiment, Biostrings, randomForest, gprofiler2,
gridExtra, ggthemes, BiocStyle, BiocGenerics, RUnit, tools,
knitr
knitr, testthat (>= 1.0.0), ComplexHeatmap (>= 1.99.0),
markdown, RColorBrewer, RCurl, GetoptLong, rmarkdown
testthat, RColorBrewer, wesanderson, scales, gridExtra,
BiocStyle, knitr, rmarkdown, airway, locfdr, tidyr, latex2exp
testthat, covr, knitr, BiocStyle, sessioninfo, rmarkdown,
roxygen2, vegan, withr, extraDistr, ggalluvial, scales,
gridExtra, R.utils, RefManageR, flexdashboard, DT, circlize,
plotly, gtools, eulerr
testthat (>= 3.0.0), knitr, rmarkdown, glue, graphite,
processx, attempt, BiocStyle, httr
gProfileR, topGO, org.Dm.eg.db, rmarkdown, testthat
BiocStyle, knitr, rmarkdown, markdown, gplots, RColorBrewer,
moments, testthat
knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
knitr, markdown, rmarkdown, BiocStyle, testthat (>= 2.1.0)
BiocStyle, knitr, rmarkdown, covr, tinytest
testthat, xtable, rmarkdown, knitr, BiocStyle, markdown
testthat, knitr, BiocStyle, rmarkdown, markdown
rmarkdown, BiocStyle, testthat (>= 2.1.0), parallel,
downloader, R.utils, doParallel, reshape2, JASPAR2020,
TFBSTools, motifmatchr, matrixStats, biomaRt, dorothea, viper,
stageR, BiocFileCache, png, htmltools, knitr, jpeg, sesame,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg19
rmarkdown, prettydoc, testthat, knitr, nlme, phangorn, plyr,
DECIPHER, randomForest, biomformat, scales, yaml, withr,
S4Vectors, purrr, seqmagick, glue, corrr, ggupset,
ggVennDiagram, gghalves, ggalluvial (>= 0.11.1), forcats, cli,
phyloseq, aplot, ggnewscale, ggside, ggh4x, hopach
RUnit, seqLogo, BiocStyle, knitr, rmarkdown, formatR,
markdown
BiocStyle (>= 2.5), ExperimentHub, knitr, lattice, mzR,
protViz (>= 0.7), rmarkdown, tartare (>= 1.5), testthat
SNPlocs.Hsapiens.dbSNP144.GRCh37,
SNPlocs.Hsapiens.dbSNP144.GRCh38,
BSgenome.Hsapiens.1000genomes.hs37d5,
BSgenome.Hsapiens.NCBI.GRCh38, BiocGenerics, IRanges,
S4Vectors, rmarkdown, markdown, knitr, testthat (>= 3.0.0),
UpSetR, BiocStyle, covr, seqminer, Rsamtools, MatrixGenerics
knitr, RUnit, BiocGenerics, BiocStyle, rmarkdown, markdown
grid, kableExtra, knitr, NanoStringDiff, pheatmap, plotly,
rlang, rmarkdown, ruv, qusage, shiny, testthat, xlsx
knitr,
TxDb.Hsapiens.UCSC.hg38.knownGene,TxDb.Drerio.UCSC.danRer10.refGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,TxDb.Dmelanogaster.UCSC.dm6.ensGene,
testthat,TxDb.Celegans.UCSC.ce11.refGene,rmarkdown,
TxDb.Rnorvegicus.UCSC.rn6.refGene,TxDb.Hsapiens.UCSC.hg19.knownGene,
org.Mm.eg.db,
org.Rn.eg.db,org.Hs.eg.db,org.Dr.eg.db,BiocGenerics,
org.Sc.sgd.db, org.Ce.eg.db,org.Dm.eg.db, methods,markdown
knitr, rmarkdown, pheatmap, shiny, openssl, crayon, egg,
DESeq2, limma, DoubleExpSeq, Rsubread, testthat (>= 3.0.0)
BiocStyle, covr, knitr, recount, RefManageR, rmarkdown,
sessioninfo, SummarizedExperiment, testthat (>= 3.0.0),
GenomicFeatures, xfun
BiocStyle, dnet, ggplot2, ggraph, gprofiler2, knitr, mlrMBO,
parallelMap, ParamHelpers, Rgraphviz, rmarkdown, smoof,
supraHex, testthat
BiocStyle, testthat, knitr, rmarkdown, covr, dplyr, readr,
withr
org.Hs.eg.db (>= 3.7.0), org.Mm.eg.db (>= 3.7.0), biomaRt (>=
2.30.0), knitr, AnnotationDbi, energy, DOSE
BiocParallel, BiocStyle, PSCBS, R.utils,
TxDb.Hsapiens.UCSC.hg19.knownGene, copynumber, covr, knitr,
optparse, org.Hs.eg.db, jsonlite, markdown, rmarkdown, testthat
SingleCellExperiment, HDF5Array, msdata, ggplot2, gplots,
dplyr, limma, magrittr, DT, shiny, shinydashboard, testthat,
knitr, BiocStyle, rmarkdown, vsn, preprocessCore, matrixStats,
imputeLCMD, pcaMethods, impute, norm, ComplexHeatmap
BiocStyle, knitr, rmarkdown, igraph, grDevices
RUnit, hgu95av2.db, AnnotationDbi, knitr, formatR, Rserve,
markdown
knitr, DT, rmarkdown, testthat, BiocStyle
AnnotationDbi, BiocStyle, covr, lintr, rcmdcheck, DT, httr,
jsonlite, kableExtra, kernlab, knitr, magick, MASS,
org.Hs.eg.db, R.utils, randomForest, readr, rmarkdown, rpart,
testthat (>= 3.0.0), tibble, tidyr,
TxDb.Hsapiens.UCSC.hg19.knownGene, futile.logger
knitr, rmarkdown, png, grid, RNASeqRData
devtools, testthat, pander, rmarkdown, Biobase,
GenomicRanges, IRanges, S4Vectors, RTCGA.rnaseq,
RTCGA.clinical, RTCGA.mutations, RTCGA.RPPA, RTCGA.mRNA,
RTCGA.miRNASeq, RTCGA.methylation, RTCGA.CNV, RTCGA.PANCAN12,
magrittr, tidyr
RUnit, ALL, hgu95av2.db, org.Mm.eg.db, shiny, pasilla,
org.Sc.sgd.db, rmarkdown, markdown
BiocGenerics, BioNet, DLBCL, formatR, knitr, msm,
org.Sc.sgd.db, markdown, rmarkdown, RUnit
Matrix, scater, uwot, RUnit, knitr, markdown, rmarkdown
parallel, Matrix, RUnit, knitr, markdown, rmarkdown, MASS,
BiocGenerics
iCOBRA, BiocStyle, rmarkdown, knitr, magrittr, IHW, qvalue,
testthat, DESeq2, edgeR, limma, tximport, readr, scRNAseq,
splatter, scater, rnaseqcomp, biomaRt
BiocStyle, knitr, rtracklayer, igraph, markdown, rmarkdown
testthat, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown,
ggplot2, Seurat, glmnet, cowplot, Matrix, rtracklayer,
BiocStyle
testthat, dplyr, knitr, roxygen2, devtools, rvest, xml2,
BiocStyle, animation, rmarkdown, pander
knitr, BiocStyle, snow, BiocFileCache, BiocParallel,
data.table, rmarkdown
rmarkdown, knitr, BiocStyle, snow, BiocFileCache,
BiocParallel
knitr, data.table, testthat, AnnotationFilter, Biobase,
GenomicFeatures, GenomicRanges, Gviz, IRanges, S4Vectors,
EnsDb.Hsapiens.v75, BiocParallel, BiocStyle, GO.db,
GenomicFiles, GenomeInfoDb, SummarizedExperiment, UpSetR,
ggplot2, png, gwascat, MotifDb, motifStack, RColorBrewer,
rmarkdown
BiocStyle, knitr, rmarkdown, gplots, matrixStats, Matrix
ggplot2, testthat, knitr, rmarkdown, iSEE, BiocStyle
BiocStyle, knitr, msdata, sessioninfo, rmarkdown, gridExtra,
testthat (>= 3.0.0), covr
SC3, knitr, testthat, reticulate, rmarkdown
knitr, testthat, markdown, alpineData, rtracklayer,
ensembldb, BSgenome.Hsapiens.NCBI.GRCh38, RColorBrewer
covr, BiocStyle, knitr, rmarkdown, RUnit
AnnotationDbi, Biostrings, rmarkdown, BiocFileCache, ggplot2,
ComplexHeatmap, circlize, ggbio, gridExtra, knitr, testthat,
BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Hsapiens.UCSC.hg38.knownGene, ExperimentHub (>= 1.15.3),
DESeq2, NanoporeRNASeq, apeglm, utils, DEXSeq
knitr, rmarkdown, HMP16SData, curatedMetagenomicData,
BiocStyle, testthat
rmarkdown, knitr, BiocStyle, testthat, SummarizedBenchmark,
dplyr, ggplot2, rlang
limma, DESeq2, airway, ggplot2, plyr, GenomicRanges,
testthat, magrittr, edgeR, qvalue, knitr, data.table, MSnbase,
rmarkdown, SummarizedExperiment
BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr,
rmarkdown, lgr
BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr,
rmarkdown, covr, lgr
BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr,
rmarkdown, igraph, magick, lgr
BiocStyle, lgr, roxygen2, devtools, testthat (>= 2.0.0),
knitr, rmarkdown, covr
BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr,
rmarkdown, lgr, covr
DSS, covr, knitr, rmarkdown, markdown, rlang, scmeth,
pkgdown, roxygen2, testthat, QDNAseq.hg19, QDNAseq.mm10
BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
testthat, knitr, covr, rmarkdown, spelling, biomaRt, remotes
testthat (>= 3.0.0), SummarizedExperiment, knitr, BiocStyle,
rmarkdown
testthat (>= 3.1), knitr, rmarkdown, BiocStyle
knitr, GO.db, KEGGREST, estrogen, org.Hs.eg.db, hgu95av2.db,
limma, affy, genefilter, rmarkdown
testthat, knitr, roxygen2, rmarkdown, biomaRt, covr,
BiocManager, BiocStyle, TENxPBMCData, singleCellTK,
M3DExampleData
knitr, rmarkdown, bookdown, testthat, BiocStyle
BiocGenerics, edgeR, knitr, pvclust, rmarkdown, RUnit, vegan
BiocStyle, knitr, testthat, MAST, Rtsne, scran, igraph,
rmarkdown
knitr, rmarkdown, BiocStyle, S4Vectors, matrixStats,
dynamicTreeCut, testthat
ade4, BiocStyle, CellBench, DuoClustering2018, knitr,
rmarkdown, testthat
rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle, magrittr,
igraph, dplyr
BiocStyle, biomaRt, HSMMSingleCell, irlba, knitr, rmarkdown,
VGAM
BiocStyle, DT, knitr, readr, rmarkdown, scater, testthat,
utils, uwot, vegan
BiocStyle, DT, dplyr, HGNChelper, knitr, methods, rmarkdown,
SummarizedExperiment, sva, testthat
BiocStyle, knitr, rmarkdown, markdown, cowplot, testthat,
shinytest
AnnotationFilter, BiocStyle, covr, ensembldb, GenomicState,
knitr, lifecycle, markdown, recount, RefManageR, rmarkdown,
sessioninfo, testthat, tibble
knitr, curatedTCGAData, MultiAssayExperiment, Homo.sapiens,
rmarkdown
testthat (>= 3.0.0), roxygen2 (>= 7.1.2), doParallel (>=
1.0.16), parallel, knitr (>= 1.34), BiocStyle (>= 2.20.2),
reshape2 (>= 1.4.4), ggplot2 (>= 3.3.5), rmarkdown, devtools
(>= 2.4.2), sessioninfo (>= 1.1.1), covr, granulator,
RefManageR
glmnet (>= 4.1.0), GSVA, viper, fgsea (>= 1.15.4), AUCell,
SummarizedExperiment, rpart, ranger, BiocStyle, covr, knitr,
pkgdown, RefManageR, rmarkdown, roxygen2, sessioninfo,
pheatmap, testthat, OmnipathR, tidyverse, Seurat
knitr, rmarkdown, igraph, testthat, FNN, tidyverse,
gridExtra, cowplot, conflicted, viridis, rgl, scRNAseq,
org.Mm.eg.db, scran, repr
knitr, rmarkdown, BiocStyle, testthat, SummarizedExperiment
knitr, rmarkdown, testthat, BiocStyle, QuasR, Rbowtie,
Rhisat2, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg38,
ensembldb, AnnotationDbi, GenomicFeatures, rtracklayer
knitr, rmarkdown, BSgenome.Drerio.UCSC.danRer10,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
TxDb.Hsapiens.UCSC.hg38.knownGene, org.Hs.eg.db,
TxDb.Mmusculus.UCSC.mm10.knownGene, org.Mm.eg.db, MotifDb,
testthat, TFBSTools
clusterProfiler, dplyr, europepmc, ggupset, knitr, rmarkdown,
org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi,
ggplotify, ggridges, grDevices, gridExtra, ggnewscale, ggrepel
(>= 0.9.0), ggstar, treeio, scales, tidytree, ggtreeExtra
testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown,
EnrichedHeatmap, biomaRt, rtracklayer, covr, vdiffr, magick
testthat, roxygen2, knitr, Biobase, SummarizedExperiment,
antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle,
minfi, rmarkdown
BiocStyle, knitr, RefManageR, rmarkdown, rCGH, sessioninfo,
AnnotationHub
testthat (>= 2.1.0), devtools, BiocManager, TENxPBMCData,
scater, schex, gridExtra, scran, Seurat, knitr, rmarkdown
testthat, knitr, rmarkdown, macrophage, tximeta,
org.Hs.eg.db, samr, DESeq2, apeglm, tximportData, limma
RUnit, BiocGenerics, knitr, markdown, rmarkdown
xtable, testthat, openCyto, ggcyto, ggridges
colorspace, flowStats, knitr, rmarkdown, markdown, testthat
testthat, flowWorkspaceData (>= 2.23.2), knitr, rmarkdown,
ggcyto, parallel, CytoML, openCyto
BiocGenerics, testthat, knitr, utils, rmarkdown
edgeR, knitr, AnnotationDbi, org.Mm.eg.db, org.Hs.eg.db,
BiocGenerics, markdown, RUnit, sparrow, msigdbr, fgsea
geneplast, BiocGenerics, BiocStyle, knitr, rmarkdown
ggtreeExtra, ggtree (>= 1.17.1), ape, cowplot, knitr,
BiocStyle, rmarkdown, readxl, ggnewscale, kableExtra, gggenes,
testthat (>= 3.0.0), phangorn
BiocStyle, rmarkdown, knitr, STexampleData, BumpyMatrix,
scater, scran, uwot, testthat (>= 3.0.0)
treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc,
markdown, testthat (>= 3.0.0), pillar, tidytree (>= 0.3.9)
testthat (>= 1.0.0), knitr, RColorBrewer, markdown,
rmarkdown, ComplexHeatmap (>= 1.99.0), Cairo, png, jpeg, tiff
knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, biomaRt,
BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocGenerics, rmarkdown
futile.logger, LoomExperiment, SummarizedExperiment,
SingleCellExperiment, S4Vectors, methods, testthat (>= 3.0.0),
knitr, rmarkdown, BiocStyle
knitr, doParallel, testthat, BiocGenerics, markdown
org.Hs.eg.db, GO.db, knitr, BiocStyle, testthat, rmarkdown
CATALYST, grid, tidyr, BiocStyle, knitr, rmarkdown, markdown,
testthat
knitr, rmarkdown, org.Mm.eg.db, targetscan.Hs.eg.db,
pheatmap, BiocStyle, testthat
BiocStyle, knitr, rmarkdown, markdown, testthat, magrittr,
BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Hsapiens.UCSC.hg19.masked,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, org.Hs.eg.db, org.Mm.eg.db,
pasillaBamSubset
knitr, rmarkdown, bookdown, testthat, BiocStyle,
BSgenome.Mmusculus.UCSC.mm10
knitr, BiocStyle, matrixStats, msd16s (>= 0.109.1), etec16s,
testthat, gss, ExperimentHub, tidyr, rmarkdown
rmarkdown, knitr, testthat (>= 2.1.0), BiocGenerics,
BiocStyle, tidyr, ggplot2
lumi, lattice, limma, xtable, SQN, MASS, matrixStats,
parallel, rtracklayer, Biostrings, TCGAMethylation450k,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
FDb.InfiniumMethylation.hg18 (>= 2.2.0), Homo.sapiens, knitr
knitr, rmarkdown, BiocStyle, SingleCellExperiment, testthat
testthat, covr, glmnet, Matrix, kernlab, e1071, ranger,
knitr, rmarkdown, BiocStyle
testthat (>= 1.0.0), timecoursedata, knitr, rmarkdown,
markdown, covr, BiocStyle
JASPAR2020, BSgenome.Mmusculus.UCSC.mm10,
TxDb.Mmusculus.UCSC.mm10.knownGene, knitr, rmarkdown, testthat,
BiocStyle, gridExtra
knitr, rmarkdown, BiocGenerics, runibic, BiocStyle, testthat
(>= 3.0.0)
MSnbase, testthat, xcms, BiocStyle, knitr, rmarkdown,
msPurityData, CAMERA, RPostgres, RMySQL
BiocStyle, knitr, rmarkdown, testthat, specL (>= 1.2)
knitr, rmarkdown, gplots, RUnit, BiocGenerics,
preprocessCore, Biobase, GEOquery
BiocStyle, countsimQC, cowplot, ExperimentHub, iCOBRA, knitr,
phylogram, RColorBrewer, reshape2, rmarkdown, statmod,
testthat, UpSetR
curatedTCGAData, rmarkdown, testthat, knitr, BiocStyle, RCy3,
clusterExperiment, netSmooth, scater
mixOmics, timeOmics, tidyverse, BiocStyle, testthat, covr,
rmarkdown, knitr
testthat, knitr, rmarkdown, DNAcopy, RcppHMM, AnnotationHub,
nullrangesData, excluderanges, EnsDb.Hsapiens.v86,
microbenchmark, patchwork, plotgardener, magrittr, cobalt
testthat (>= 3.0.0), AnnotationHub, utils, knitr, rmarkdown
flowWorkspaceData, knitr, rmarkdown, markdown, testthat,
utils, tools, parallel, ggcyto, CytoML
remotes, knitr, BiocStyle, covr, markdown, rmarkdown, here,
testthat (>= 3.0.0), piggyback, badger, magick
testthat, knitr, BiocStyle, formatR, rmarkdown, RColorBrewer,
foreach, doSNOW, parallel, org.Hs.eg.db, clusterProfiler
testthat, knitr, ecodist, rmarkdown, BiocStyle, phyloseq,
SummarizedExperiment, TreeSummarizedExperiment, glmnet, dplyr,
mia
AnnotationDbi, AnnotationHub, BSgenome,
BSgenome.Hsapiens.UCSC.hg19, ComplexHeatmap, GenomicFeatures,
GenomeInfoDb, GenomicRanges, ggplot2, InteractionSet, knitr,
org.Hs.eg.db, rtracklayer, plotgardenerData, png, rmarkdown,
scales, showtext, testthat (>= 3.0.0),
TxDb.Hsapiens.UCSC.hg19.knownGene
knitr, DT, ontologyPlot, testthat, rmarkdown, BiocStyle
org.Sc.sgd.db, ppiStats, rmarkdown, knitr, BiocStyle
BiocStyle, knitr, rmarkdown, Gviz, rtracklayer, ggplot2,
BSgenome.Hsapiens.UCSC.hg38, testthat, stringr, stringi
knitr, rmarkdown, markdown, BiocStyle, preciseTAD
BiocStyle, testthat, knitr, rmarkdown, png, Cairo
airway, biomaRt, BiocFileCache, broom, Seurat,
SingleCellExperiment, DESeq2, BiocStyle, knitr, readr, readxl,
pheatmap, tibble, rmarkdown, testthat (>= 2.1.0)
affy, MSnbase, ggplot2, lattice, mzR, BiocStyle, rmarkdown
BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, testthat, BiocStyle,
knitr, rmarkdown, BiocManager, MASS
rmarkdown, knitr, RUnit, BiocGenerics, BiocStyle
RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt,
Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db,
org.Mm.eg.db, ggplot2, BiocStyle, knitr, rmarkdown
BiocStyle (>= 2.5), ExperimentHub, knitr, protViz (>= 0.7),
rmarkdown, tartare (>= 1.5), testthat
knitr, RColorBrewer, sqldf, BiocGenerics, testthat,
BiocStyle, jsonlite, heatmaply, glmnet, foreach, doSNOW,
parallel, rmarkdown
BiocManager, biovizBase, bumphunter (>= 1.7.6), derfinderPlot
(>= 1.28.1), sessioninfo, DT, edgeR, ggbio (>= 1.35.2),
ggplot2, grid, gridExtra, IRanges, mgcv, pasilla, pheatmap,
RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene, whisker
BiocStyle, knitr, rmarkdown,
BSgenome.Hsapiens.UCSC.hg19.masked, testthat
bit64, BiocStyle, knitr, rmarkdown, testthat, microbenchmark,
dplyr, ggplot2, mockery
knitr, testthat, BiocStyle, DT, rmarkdown
BiocStyle, knitr, rmarkdown, testthat, scRNAseq, circlize,
ComplexHeatmap, ggplot2, dplyr, MASS, viridisLite, mbkmeans
knitr, markdown, rmarkdown, scater, scattermore, scales,
matrixStats, deldir
testthat, knitr, BiocStyle, rmarkdown, DT, mclust, dplyr
testthat, LRBaseDbi, Seurat, scTGIF, Homo.sapiens
knitr, BiocStyle, testthat, SC3, scRNAseq, rmarkdown, msd16s,
metagenomeSeq, epivizrStandalone, GenomeInfoDb
knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0), shinytest,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
BSgenome.Rnorvegicus.UCSC.rn6
BiocStyle, knitr, rsvd, Rtsne, scater, cowplot, rmarkdown
testthat, knitr, BiocStyle, rmarkdown, patchwork, ggplot2,
impute, scater, sva, preprocessCore, vsn, uwot
markdown, BiocGenerics, covr, DuoClustering2018, ggplot2,
knitr, rmarkdown, TENxPBMCData, testthat
testthat, knitr, rmarkdown,
TxDb.Hsapiens.UCSC.hg18.knownGene, Gviz
BSgenome, knitr, rmarkdown, RMySQL, RUnit
BiocStyle, knitr, rhdf5, rmarkdown, scater, testthat
BiocGenerics, BiocStyle, clusterExperiment,
DelayedMatrixStats, knitr, mclust, mgcv, RColorBrewer, rgl,
rmarkdown, testthat, uwot, covr
AnnotationDbi, BiasedUrn, Biobase (>= 2.24.0), BiocStyle,
DESeq2, dplyr, dtplyr, fgsea, GSVA, GO.db, goseq, hexbin,
magrittr, matrixStats, msigdbr (>= 7.4.1), KernSmooth, knitr,
PANTHER.db (>= 1.0.3), R.utils, reactome.db, rmarkdown,
SummarizedExperiment, statmod, stringr, testthat, webshot
knitr, rmarkdown, BiocStyle, BiocSingular, RUnit,
BiocGenerics, ExpressionAtlas, DT, Biobase, GEOquery,
shinyWidgets, shinyjs, htmltools, shinyBS, sortable, scater,
scran
knitr, RefManageR, rmarkdown, BiocStyle, testthat (>= 2.1.0),
covr, here, BiocManager, pryr
BiocManager, Biostrings, knitr, pheatmap, rmarkdown,
testthat, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Mmusculus.UCSC.mm9.knownGene
covr, testthat, equatiomatic, universalmotif, kebabs,
ComplexHeatmap, rmarkdown, markdown, knitr, devtools,
BSgenome.Mmusculus.UCSC.mm10.masked,
BSgenome.Hsapiens.UCSC.hg38.masked, BiocManager
agricolae, BiocFileCache, BiocStyle, car, covr, cowplot,
e1071, emmeans, ggdendro, knitr, magick, nlme, openxlsx, pls,
pmp, reshape2, ropls, rmarkdown, Rtsne, testthat, rappdirs
Hmisc, clinfun, xtable, Biobase, BiocManager
TxDb.Hsapiens.UCSC.hg19.knownGene, ggplot2, devtools,
testthat (>= 2.1.0), roxygen2, knitr, plyranges, circlize,
tictoc, IRanges, SummarizedExperiment, rmarkdown
TxDb.Hsapiens.UCSC.hg19.knownGene, ggplot2, devtools,
testthat (>= 2.1.0), roxygen2, knitr, BiocStyle, plyranges,
circlize, tictoc, IRanges, stats, SummarizedExperiment,
rmarkdown
knitr, rmarkdown, testthat (>= 3.0.0), ggplot2, tidyverse,
BiocStyle
BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo
rmarkdown, knitr, pander, testthat, devtools, markdown
BiocStyle, knitr, rmarkdown, systemPipeRdata,
GenomicAlignments, grid, dplyr, testthat, rjson, annotate,
AnnotationDbi, kableExtra, GO.db, GenomeInfoDb, DT,
rtracklayer, limma, edgeR, DESeq2, IRanges, batchtools,
GenomicFeatures (>= 1.31.3), VariantAnnotation (>= 1.25.11)
testthat, BiocStyle, knitr, rmarkdown, systemPipeR,
systemPipeRdata, rhandsontable, zip, callr, pushbar, fs, readr,
R.utils, DESeq2, SummarizedExperiment, glmpca, pheatmap, grid,
ape, Rtsne, UpSetR, tidyr, esquisse (>= 1.0.2), cicerone
tinytest, BiocStyle, ggimage, knitr, rmarkdown
BiocStyle, knitr, rmarkdown, testthat, tools
BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva,
GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne,
S4Vectors, ggplot2, widyr, clusterProfiler, msigdbr, DESeq2,
broom, survival, boot, betareg, tidyHeatmap, pasilla, ggrepel,
devtools, functional, survminer, tidySummarizedExperiment,
markdown, uwot
testthat (>= 1.0.0), knitr, rmarkdown, markdown, covr,
BiocStyle
topdownrdata (>= 0.2), knitr, rmarkdown, ranger, testthat,
BiocStyle, xml2
testthat, TENxPBMCData, scran, knitr, rmarkdown
scater, dplyr, testthat (>= 3.0.0), covr, S4Vectors,
rmarkdown, knitr
RUnit, plyr, knitr, BiocGenerics, rmarkdown, formatR,
markdown, BiocParallel, BSgenome.Scerevisiae.UCSC.sacCer3,
BSgenome.Athaliana.TAIR.TAIR9
BiocGenerics, shinycssloaders, tidyverse, BiocManager,
Biostrings, xtable, rlist, motifStack, knitr, rmarkdown,
testthat (>= 3.0.0), fs, BiocStyle, RefManageR, biocthis
BiocStyle, ggplot2, hrbrthemes, knitr, readr, rmarkdown,
scater, usethis, utils
RefManageR, BiocStyle, knitr, sessioninfo, rmarkdown,
testthat (>= 3.0.0), TxDb.Scerevisiae.UCSC.sacCer3.sgdGene,
BSgenome.Scerevisiae.UCSC.sacCer3
testthat, org.Hs.eg.db, org.Mm.eg.db, patchwork, singscore,
knitr, rmarkdown, prettydoc, BiocStyle, pkgdown, covr
affydata, hgu95av2cdf, BiocStyle, knitr, rmarkdown, dplyr,
testthat
RPMM, IlluminaHumanMethylationEPICanno.ilm10b2.hg19,
BiocStyle, knitr, rmarkdown,
IlluminaHumanMethylationEPICmanifest, irlba,
FlowSorted.Blood.EPIC, FlowSorted.Blood.450k, preprocessCore
BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata (>=
0.25.1), ncdf4, testthat, pander, magrittr, rmarkdown,
multtest, MALDIquant, pheatmap, Spectra (>= 1.1.17),
MsBackendMgf, progress
knitr, limma, edgeR, GEOquery, stringr, printr, rmarkdown
knitr, rmarkdown, testthat, DT, caret, microbiome, tidyverse
BiocStyle, knitr, rmarkdown, scRNAseq, scater, scran,
testthat
ggplot2, TENxPBMCData, dplyr, Rtsne, Seurat, AnnotationDbi,
BiocGenerics, stringr, org.Hs.eg.db, knitr, rmarkdown, testthat
(>= 3.0.0)
DT (>= 0.5), testthat (>= 2.0.0), plotly (>= 4.7.1),
ChemoSpec, knitr, zip (>= 2.0.4), GGally (>= 1.4.0), ggrepel
(>= 0.8.0), writexl (>= 1.0), curl, progressr,
SummarizedExperiment, S4Vectors
testthat, BiocStyle, knitr, rmarkdown, pander, seewave
rmarkdown, markdown, BiocStyle, knitr, testthat (>= 3.0.0),
utils, testthat
airway, BiocStyle, boot, DESeq2, GOSemSim, Hmisc, knitr (>=
1.35), org.Hs.eg.db, reactome.db, rmarkdown, spelling,
targetscan.Hs.eg.db, testthat, WGCNA
knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle, DESeq2,
covr
AnnotationDbi, AnnotationHub, BiocStyle, ExperimentHub,
GenomicFeatures, S4Vectors, depmap, knitr, rmarkdown
RUnit, BiocGenerics, Biobase, jsonlite, rmarkdown,
downloader, devtools (>= 1.4.1), usethis, BiocStyle
BiocGenerics, tools, foreach, BatchJobs, BBmisc, doParallel,
Rmpi, GenomicRanges, RNAseqData.HNRNPC.bam.chr14,
TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation,
Rsamtools, GenomicAlignments, ShortRead, RUnit, BiocStyle,
knitr, batchtools, data.table
testthat, restfulSE, HDF5Array, BiocStyle, rmarkdown, knitr
RefManageR, BiocStyle, covr, knitr, testthat (>= 3.0.0),
sessioninfo
phyloseq, BiocStyle, covr, knitr, RefManageR, rmarkdown,
sessioninfo, testthat (>= 3.0.0), tidyverse, roxygen2, mia,
purrr
testthat (>= 3.0.0), spelling, knitr, data.table, R.utils,
tidyverse, rmarkdown, htmlwidgets, MASS, factoextra, Rtsne,
plotly, dendextend, BiocStyle, cowplot
RUnit, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db,
BSgenome.Mmusculus.UCSC.mm10,
TxDb.Mmusculus.UCSC.mm10.knownGene, org.Mm.eg.db, lattice,
MASS, tensorflow, testthat
BiocStyle, rmarkdown, knitr, AnnotationHub, sessioninfo
data.table, dplyr, tidyr, readr, knitr, RUnit, BiocGenerics,
testthat, knitr, markdown, rmarkdown, BiocStyle, Signac,
future, igraph, bluster, httr
limma, genefilter, edgeR, car, Rmixmod, ggplot2 (>= 3.0.0),
gridExtra (>= 2.0.0), cowplot, BiocStyle, pamr, PoiClaClu,
parathyroidSE, knitr, htmltools, gtable, scales, e1071,
rmarkdown, IRanges, robustbase, glmnet, class
knitr, rmarkdown, testthat, BiocStyle (>= 2.5.19)
testthat, BiocStyle, AnnotationDbi, clusterProfiler, graph,
diptest, cluster, vioplot, visNetwork, vsn, igraph, FactoMineR,
factoextra, dendextend, parallel, doParallel, Mfuzz, apcluster,
forcats, readxl, openxlsx, multcomp, purrr, tibble, knitr,
norm, scales, tidyverse, cp4p, imp4p (>= 1.1),lme4, dplyr,
limma, preprocessCore, stringr, tidyr, impute, gplots,
grDevices, reshape2, graphics, stats, methods, ggplot2,
RColorBrewer, Matrix, org.Sc.sgd.db
testthat (>= 3.0.0), knitr, rmarkdown, dplyr, tidyr, tibble,
ggplot2, missForest, pheatmap, RColorBrewer, ggrepel,
ggbeeswarm
BiocStyle, EBImage, RColorBrewer, RNAinteractMAPK, hwriter,
xtable, beeswarm
BiocStyle, knitr, dplyr, devtools, DT, rmarkdown
BiocStyle, AnnotationHub, ExperimentHub, knitr, testthat,
data.table, DT, GenomicInteractions, webshot, R.utils, covr,
sesameData
remotes, knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0),
readxl, memoise, markdown, sctransform, DESeq2, MAST,
DelayedMatrixStats, cowplot, ggdendro, grDevices, grid,
gridExtra, scales, magick, badger
SummarizedExperiment, testthat, Biobase, survminer,
affycoretools, knitr, plotROC, minfi, limma, rmarkdown
ggalt, ggrastr, RUnit, BiocGenerics, knitr, DESeq2, pasilla,
airway, org.Hs.eg.db, gridExtra, magrittr, rmarkdown
testthat (>= 3.0.0), badger, knitr, htmlwidgets, BiocStyle,
data.table, BiocParallel, BiocFileCache,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene
RCurl, gage, topGO, GO.db, reactome.db, RUnit, BiocGenerics,
org.Sc.sgd.db, knitr, rmarkdown, AnnotationDbi, BiocManager
knitr,rmarkdown, FlowSorted.CordBlood.450k,
FlowSorted.Blood.450k(>= 1.0.1),
EpiDISH,FlowSorted.CordBloodNorway.450k, testthat,
IlluminaHumanMethylation450kmanifest(>= 0.2.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1),
IlluminaHumanMethylationEPICanno.ilm10b4.hg19
FlowSorted.Blood.EPIC, knitr, rmarkdown, testthat,
IlluminaHumanMethylation450kmanifest(>= 0.2.0),
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
knitr, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
BSgenome.Mmusculus.UCSC.mm9, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Mmusculus.UCSC.mm9.knownGene, org.Hs.eg.db, org.Mm.eg.db,
IHW, biomaRt, clusterProfiler, ReactomePA, DOSE, ChIPseeker,
testthat (>= 3.0.0), BiocStyle
knitr, RUnit, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, testthat (>=
3.0.0)
BiocStyle, knitr, rmarkdown, DT, testthat, listviewer,
ggplot2, GenomicAlignments, Rsamtools, BiocParallel,
TxDb.Hsapiens.UCSC.hg38.knownGene, VariantAnnotation, maftools,
R.utils, data.table
AnnotationFilter, rtracklayer, testthat, knitr, BiocStyle,
rmarkdown, GenomicDistributionsData
RMariaDB, org.Mm.eg.db, org.Hs.eg.db, BSgenome,
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce11, BSgenome.Dmelanogaster.UCSC.dm3
(>= 1.3.17), mirbase.db, FDb.UCSC.tRNAs,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Celegans.UCSC.ce11.ensGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1),
TxDb.Mmusculus.UCSC.mm10.knownGene (>= 3.4.7),
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,
TxDb.Hsapiens.UCSC.hg38.knownGene (>= 3.4.6),
SNPlocs.Hsapiens.dbSNP144.GRCh38, Rsamtools, pasillaBamSubset
(>= 0.0.5), GenomicAlignments (>= 1.15.7), ensembldb,
AnnotationFilter, RUnit, BiocStyle, knitr
RUnit, BiocStyle, knitr, rmarkdown, rtracklayer, testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
rmarkdown, knitr, testthat (>= 3.0.0), parallel, ggiraph,
Seurat, SpatialExperiment (>= 1.4.0), SpatialDecon, patchwork
BiocGenerics, BiocStyle, knitr, rmarkdown, Harman (>= 1.23.3)
testthat, covr, knitr, BiocStyle, sessioninfo, rmarkdown,
roxygen2, vegan, withr, extraDistr, ggalluvial, scales,
gridExtra, R.utils, RefManageR, flexdashboard, DT, circlize,
plotly, gtools, eulerr, openxlsx
BiocGenerics,BiocManager, BiocStyle,
BSgenome.Mmusculus.UCSC.mm10, BSgenome.Hsapiens.UCSC.hg19,
EnsDb.Hsapiens.v86, EnsDb.Mmusculus.v79, knitr, markdown,
rmarkdown, rtracklayer, RUnit, grDevices,
TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Mmusculus.UCSC.mm10.knownGene
BiocStyle, Gviz, knitr, rmarkdown, GO.db, org.Hs.eg.db
knitr, rmarkdown, BiocStyle, TFBSTools (>= 1.31.2)
BiocGenerics, BiocStyle, testthat, knitr, rmarkdown
biomaRt, BiocStyle, dendextend, graphics, knitr, pheatmap,
png, scales, sva, BiocManager
knitr, markdown, BiocStyle, testthat (>= 3.0.0)
GO.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
org.Cf.eg.db, org.Mmu.eg.db, KEGGREST, annotate, Rgraphviz,
GOstats, graph, limma, mouse4302.db, reactome.db
knitr, testthat, Seurat, ggpubr, foreach, psych,
MultiAssayExperiment, SummarizedExperiment,
SingleCellExperiment, ggrastr, mvtnorm, GGally, rmarkdown,
data.table, tidyverse, BiocStyle, Matrix, markdown
rmarkdown, knitr, devtools, testthat, ggplot2, BiocStyle
BiocStyle, knitr, rmarkdown, covr, tinytest, gghighlight
BiocStyle, knitr, rmarkdown, tinytest, covr, markdown
knitr, BiocStyle, optparse, testthat (>= 2.1.0), rmarkdown,
markdown
signal, waveslim, BiocStyle, knitr, rmarkdown
sparseMatrixStats, DelayedMatrixStats, SummarizedExperiment,
testthat (>= 2.1.0), Matrix
testthat, knitr, msdata, BiocStyle, rmarkdown, plotly, shiny,
shinyjs, DT
rmarkdown, BiocStyle, testthat (>= 2.1.0), parallel,
downloader, R.utils, doParallel, reshape2, JASPAR2020,
TFBSTools, motifmatchr, matrixStats, biomaRt, dorothea, viper,
stageR, BiocFileCache, png, htmltools, knitr, jpeg,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg19
rmarkdown, prettydoc, testthat, knitr, nlme, phangorn,
DECIPHER, randomForest, jsonlite, biomformat, scales, yaml,
withr, S4Vectors, purrr, seqmagick, glue, corrr, ggupset,
ggVennDiagram, gghalves, ggalluvial (>= 0.11.1), forcats, cli,
phyloseq, aplot, ggnewscale, ggside, ggh4x, hopach
testthat, msdata (>= 0.35.3), knitr (>= 1.1.0), roxygen2,
BiocStyle (>= 2.5.19), rmarkdown
BiocStyle, rmarkdown, knitr, BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Mmusculus.UCSC.mm10,
BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Ecoli.NCBI.20080805
BiocStyle (>= 2.5), ExperimentHub, MsBackendMgf, knitr,
lattice, mzR, protViz (>= 0.7), rmarkdown, tartare (>= 1.5),
testthat
testthat, knitr, BiocStyle, rmarkdown, roxygen2, imputeLCMD,
impute, norm, pcaMethods, vsn, Matrix, preprocessCore
HDF5Array, rmarkdown, knitr, fs, testthat, BiocStyle, covr,
SingleCellMultiModal, CiteFuse, scater
SNPlocs.Hsapiens.dbSNP144.GRCh37,
SNPlocs.Hsapiens.dbSNP144.GRCh38,
BSgenome.Hsapiens.1000genomes.hs37d5,
BSgenome.Hsapiens.NCBI.GRCh38, BiocGenerics, S4Vectors,
rmarkdown, markdown, knitr, testthat (>= 3.0.0), UpSetR,
BiocStyle, covr, seqminer, Rsamtools, MatrixGenerics, badger
BiocStyle, bookdown, dnet, ggplot2, ggraph, gprofiler2,
knitr, mlrMBO, parallelMap, ParamHelpers, Rgraphviz, rmarkdown,
smoof, supraHex, testthat
BiocStyle, covr, ggraph, patchwork, plotly, tidyverse,
testthat (>= 2.3.2)
msdata, rpx, mzID, mzR, Spectra, SummarizedExperiment,
BiocStyle, rmarkdown, knitr, factoextra, testthat
testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown
BiocStyle, BiocManager, testthat, shinyTree, knitr, future,
sass, R.utils, gplots, ggplot2, vioplot, promises,
colourpicker, tibble, DAPARdata (>= 1.22.2), webshot,
shinythemes, XML, gtools, compiler, shinyjs, DT
markdown, ggplot2, BiocStyle, rmarkdown, knitr, testthat (>=
3.0.0)
BiocStyle, testthat, knitr, rmarkdown, base64enc, graph
BiocStyle,gplots,RMassBankData (>= 1.33.1), xcms (>= 1.37.1),
CAMERA, RUnit, knitr, rmarkdown
BiocStyle, knitr, rmarkdown, markdown, TreeAndLeaf
Category, GOstats, Gviz,
IlluminaHumanMethylation450kmanifest, RPMM, RnBeads.hg19,
RnBeads.mm9, XML, annotate, biomaRt, foreach, doParallel,
ggbio, isva, mclust, mgcv, minfi, nlme, org.Hs.eg.db,
org.Mm.eg.db, org.Rn.eg.db, quadprog, rtracklayer, qvalue, sva,
wateRmelon, wordcloud, argparse, glmnet, GLAD,
IlluminaHumanMethylation450kanno.ilmn12.hg19, scales,
missMethyl, impute, shiny, shinyjs, plotrix, hexbin, RUnit,
MethylSeekR, sesame
parallel, crayon, RUnit, knitr, markdown, rmarkdown,
BiocGenerics, SNPRelate, ggmanh
Matrix, scater, uwot, RUnit, knitr, markdown, rmarkdown,
rhdf5, HDF5Array
testthat, knitr, rmarkdown, visNetwork, ggrepel, gridExtra,
digest, doParallel, bigmemory
BiocStyle, colorBlindness, ExperimentHub, DelayedArray,
ggcorrplot, grid, igraph, jpeg, knitr, methods, png, rmarkdown,
scater, scatterpie, scran, Seurat, SeuratObject,
SpatialExperiment, SummarizedExperiment, S4Vectors,
TabulaMurisSenisData, TENxVisiumData, testthat
knitr, BiocStyle, rmarkdown, testthat, rcmdcheck, gplots,
gridExtra, hash, dplyr, parallel
DESeq2, GenomicRanges, GenomicFeatures, genefilter, statmod,
gdata, RColorBrewer, ggplot2, gplots, cluster, clue, grid,
gridExtra, ggbio, Gviz, geneplotter, matrixStats, pheatmap,
BiocStyle, knitr, BiocParallel
testthat, BiocStyle, knitr, rmarkdown, Matrix, scRNAseq (>=
2.9.1), Rtsne
HDF5Array (>= 1.7.5), annotate, AnnotationDbi, hgu95av2.db,
GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene, jsonlite,
rhdf5, airway (>= 1.15.1), BiocStyle, knitr, rmarkdown, RUnit,
testthat, digest
BiocStyle, caret, circlize, class, covr, dplyr, e1071,
glmnet, HGNChelper, impute, knitr, lintr, MASS, plyr, pROC,
randomForest, rmarkdown, shiny, spelling, sva, testthat
jpeg, png, BiocStyle, rmarkdown, devtools, maftools,
parmigene, c3net, minet, dnet, Biobase, affy, testthat, sesame,
AnnotationHub, ExperimentHub, pathview, clusterProfiler,
Seurat, ComplexHeatmap, circlize, ConsensusClusterPlus, igraph,
supraHex, limma, edgeR, sva, EDASeq, survminer, genefilter,
gridExtra, survival, doParallel, parallel, ggrepel (>= 0.6.3),
scales, grid
AnnotationHub, BiocFileCache, BiocStyle, curatedTCGAData,
ComplexHeatmap, devtools, dplyr, httr,
IlluminaHumanMethylation450kanno.ilmn12.hg19, impute, knitr,
magrittr, mirbase.db, org.Hs.eg.db, RColorBrewer, readr,
rmarkdown, RTCGAToolbox (>= 2.17.4), rtracklayer, R.utils,
testthat, TxDb.Hsapiens.UCSC.hg18.knownGene,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle, ggpubr, rmarkdown, shiny, knitr, testthat (>=
3.0.0)
knitr, rmarkdown, S4Vectors, plotly, scales, tidyr, ggplot2,
DESeq2, BiocGenerics, ggrepel, rcompanion,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocFileCache, BiocStyle, dplyr, ggplot2, knitr, pheatmap,
sessioninfo, RefManageR, rmarkdown, testthat (>= 3.0.0),
tibble, tidyr, SingleCellExperiment
Seurat, scater, scRNAseq, reshape2, patchwork, ggplot2,
BiocStyle, knitr, rmarkdown
knitr, rmarkdown, roxygen2 (>= 6.0.0), testthat (>= 3.0.0),
gplots, tidyr
knitr, BiocStyle, testthat (>= 3.0.0), BiocManager
coda (>= 0.19-4), testthat, interp, fields, pheatmap,
viridis, rmarkdown, spelling
knitr, rmarkdown, methods, testthat, BiocStyle
testthat (>= 3.0.0), BiocStyle, covr, knitr, rmarkdown,
dplyr, ggplot2, spelling
knitr, rmarkdown, kableExtra, BiocStyle, SPsimSeq, testthat
roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr,
rmarkdown, covr, lgr
BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, annotatr,
tidyr, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
minfi, MultiAssayExperiment, knitr, rmarkdown, rexposome
BiocStyle, knitr, ontologyIndex, rmarkdown, testthat (>=
3.0.0)
testthat (>= 3.0.0), SummarizedExperiment, knitr, BiocStyle,
rmarkdown, covr, sessioninfo
zellkonverter, SingleCellExperiment, HDF5Array, BiocStyle,
knitr, rmarkdown, testthat (>= 3.0.0), mockery
AnnotationDbi (>= 1.38.2), knitr, markdown, rmarkdown,
rtracklayer (>= 1.36.6), testthat, vdiffr (>= 0.2.3), covr
testthat (>= 0.8), knitr, BiocStyle (>= 0.0.14), rmarkdown,
BRAIN, UniProt.ws (>= 2.36.5)
BiocStyle, knitr, RUnit, BiocGenerics, showtext
BiocStyle, corrplot, knitr, rmarkdown, testthat,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylationEPICanno.ilm10b4.hg19
testthat (>= 3.0.0), knitr, BiocStyle, rmarkdown, covr
genefilter, mvtnorm, testthat (>= 0.3), samr, pamr, kohonen,
NMF, WGCNA, Rtsne, umap, clusterProfiler, ReactomePA, DOSE,
AnnotationDbi, gplots, hu6800.db, BiocManager, data.tree,
dendextend, Polychrome, rmarkdown, simplifyEnrichment, cowplot,
flexclust, randomForest, e1071
BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0), statmod
BiocStyle, EBSeq, DESeq2 (>= 1.1.31), baySeq (>= 2.2.0),
genefilter, NOISeq, TCC, NBPSeq (>= 0.3.0), rmarkdown,
phytools, phangorn, testthat, ggtree, tidytree, statmod, covr
ade4, BiocStyle, CellBench, DuoClustering2018, knitr,
rmarkdown, scater, testthat
testthat, knitr, rmarkdown, piano, ggplot2
BiocStyle, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown,
testthat
knitr, rmarkdown, testthat (>= 2.1.0), BiocStyle, formatR,
cowplot, ggplotify, dagitty, lmtest, sandwich, devtools,
curatedTCGAData, TCGAutils, SummarizedExperiment, RcppParallel,
docopt, CARNIVAL
glmnet (>= 4.1.0), GSVA, viper, fgsea (>= 1.15.4), AUCell,
SummarizedExperiment, rpart, ranger, BiocStyle, covr, knitr,
pkgdown, RefManageR, rmarkdown, roxygen2, sessioninfo,
pheatmap, testthat, OmnipathR, Seurat, ggplot2, ggrepel,
patchwork
clusterProfiler, dplyr, europepmc, ggupset, knitr, rmarkdown,
org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi,
ggplotify, ggridges, grDevices, gridExtra, ggnewscale, ggrepel
(>= 0.9.0), ggstar, treeio, scales, tidytree, rlang,
ggtreeExtra, tidydr
RUnit, knitr, rmarkdown, ggplot2, ggstance
rmarkdown, BiocStyle, knitr, ExperimentHub, minfi
AnnotationDbi, AnnotationHub, testthat, knitr, rmarkdown,
BiocStyle, a4Base, kableExtra,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylation450kmanifest,
IlluminaHumanMethylationEPICmanifest,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg18.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, rtracklayer, methods,
ensembldb, ExperimentHub,
IlluminaHumanMethylationEPICanno.ilm10b2.hg19, grid, gridExtra,
grDevices, tibble, Gviz, ggrepel, reshape2, purrr,
GenomeInfoDb, Homo.sapiens
Seurat, SeuratObject, knitr, rmarkdown, markdown, BiocStyle,
testthat, dittoSeq (>= 1.1.2)
BiocStyle, covr, knitr, plyranges, rmarkdown, testthat (>=
3.0.0), tidyverse
BiocFileCache, BiocStyle, graphics, knitr, memuse, rmarkdown,
spelling, testthat (>= 3.0.0)
testthat, knitr, rmarkdown, macrophage, tximeta,
org.Hs.eg.db, samr, DESeq2, apeglm, tximportData, limma,
ensembldb, EnsDb.Hsapiens.v86, GenomicFeatures, AnnotationDbi,
pheatmap, Gviz, GenomeInfoDb, data.table
testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown,
openCyto, flowStats(>= 4.7.1)
BiocStyle, dplyr, knitr, rmarkdown, testthat (>= 2.1.0)
BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0), markdown,
GenomicRanges
ggtreeExtra, ape, cowplot, knitr, BiocStyle, rmarkdown,
readxl, ggnewscale, kableExtra, gggenes, testthat (>= 3.0.0)
treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc,
markdown, testthat (>= 3.0.0), pillar
emojifont, ggimage, ggplotify, shadowtext, grDevices, knitr,
prettydoc, rmarkdown, stats, testthat, tibble, glue
checkmate, a4Preproc, ALL, BiocStyle, clipper, codetools,
hgu133plus2.db, hgu95av2.db, impute, knitr, org.Hs.eg.db,
parallel, R.rsp, RCy3, rmarkdown, SPIA (>= 2.2), testthat,
topologyGSA (>= 1.4.0)
SummarizedExperiment, knitr, plotly, WGCNA, rmarkdown
RUnit, BiocGenerics, markdown, BiocStyle, knitr, rmarkdown
BiocStyle, DelayedArray, DT, grid, httr, knitr, rmarkdown,
statmod, testthat (>= 2.0), vdiffr, withr
BiocStyle, RefManageR, rmarkdown, knitr, testthat (>= 3.0.0)
testthat (>= 3.0.0), knitr, rmarkdown, devtools, impute
BiocGenerics, similaRpeak, RUnit, knitr, BiocStyle, rmarkdown
testthat, covr, glmnet, Matrix, kernlab, e1071, ranger,
knitr, rmarkdown, BiocStyle, withr
testthat, MASS, mvtnorm, scater, scran, covr, knitr,
rmarkdown, uwot, scuttle, BiocStyle, MouseGastrulationData,
MouseThymusAgeing, magick, RCurl, curl, graphics
BiocStyle, knitr, rmarkdown, R.cache, SPONGE
BiocStyle, covr, future, igraph (>= 1.2.7), knitr, MASS,
rmarkdown, testthat (>= 3.0.0)
grImport, grImport2, BiocGenerics, MotifDb, RColorBrewer,
BiocStyle, knitr, RUnit, rmarkdown, JASPAR2020
Biobase, knitr, seqinr, ape (>= 5.1), phangorn
testthat (>= 2.1.0), knitr, rmarkdown, pkgdown
BiocStyle, knitr, rmarkdown, STexampleData, scran, ggplot2,
testthat
BiocStyle, BiocGenerics, knitr, rmarkdown, testthat
testthat, knitr, rmarkdown, DNAcopy, RcppHMM, AnnotationHub,
nullrangesData, excluderanges, ensembldb, EnsDb.Hsapiens.v86,
microbenchmark, patchwork, plotgardener, magrittr, tidyr,
cobalt
RcppProgress, knitr, rmarkdown, roxygen2, devtools, usethis,
desc, testthat (>= 3.0.0)
remotes, knitr, BiocStyle, covr, markdown, rmarkdown, here,
testthat (>= 3.0.0), piggyback, badger, magick, desc,
hrbrthemes, Cairo, yulab.utils, haven, GenomeInfoDbData, ape,
phytools, rphylopic, TreeTools, RColorBrewer, ggimage
pRoloc (>= 1.13.8), testthat, SummarizedExperiment
knitr, rmarkdown, testthat (>= 2.1.0), BiocStyle, formatR,
devtools, plotROC, PRROC, mgsa, topGO, msigdbr, betareg, fgsea,
ComplexHeatmap, GGally, ggsignif, circlize, enrichplot,
ggnewscale, tidyverse, cowplot, ggfittext
testthat, devtools, faahKO, msdata, knitr, rmarkdown, pander,
BiocStyle
limma, Rtsne, missForest, vsn, pcaMethods, pls, MsFeatures,
impute, imputeLCMD, nlme, testthat (>= 3.0.0), BiocStyle,
knitr, rmarkdown
BiocFileCache, BiocStyle, covr, knitr, limma, RefManageR,
rmarkdown, sessioninfo, testthat (>= 3.0.0)
knitr, testthat, BiocStyle, rcellminer, rmarkdown
BiocManager, biovizBase, bumphunter (>= 1.7.6), derfinderPlot
(>= 1.29.1), sessioninfo, DT, edgeR, ggbio (>= 1.35.2),
ggplot2, grid, gridExtra, IRanges, mgcv, pasilla, pheatmap,
RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene, whisker
testthat (>= 2.1.0), BiocStyle, knitr, rmarkdown, kableExtra,
BiocManager, stringr, ggplot2, tibble, lipidr
BiocStyle, covr, kableExtra, knitr, rmarkdown, styler,
testthat (>= 3.0.0)
knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0),
shinydashboard, DT, plotly, heatmaply, magrittr, utils,
clusterProfiler, DOSE, slam, org.Ag.eg.db, org.At.tair.db,
org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db,
org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db,
org.Hs.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pt.eg.db,
org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db
BiocManager, BiocStyle, cowplot, DT, knitr, pander,
rmarkdown, spelling, stringr, testthat (>= 3.0.0), tidyverse
BiocStyle, knitr, rmarkdown, testthat, scRNAseq, circlize,
ComplexHeatmap, ggplot2, dplyr, viridisLite, mbkmeans
BiocStyle, biomaRt, cowplot, knitr, scRNAseq, robustbase,
rmarkdown, uwot, testthat, pheatmap, snifter, Biobase
BiocStyle, testthat (>= 3.0.0), markdown, ggplot2, knitr,
tidyseurat, tidySingleCellExperiment
cowplot, hopach (>= 2.42.0), BiocStyle, knitr (>= 1.22),
rmarkdown (>= 1.12), testthat (>= 3.0.2), covr, vdiffr (>=
0.3.0)
BiocFileCache, BiocManager, BiocStyle, ChIPpeakAnno, covr,
knitr, rmarkdown, testthat
BiocGenerics, sesame, testthat, knitr, rmarkdown
scales, knitr, DNAcopy, e1071, randomForest, RPMM, rmarkdown,
testthat, tidyr, BiocStyle, ggrepel, grDevices, pals
knitr, ggplot2, cowplot, mclust, apcluster, MCL, dbscan,
igraph, gridExtra, dynamicTreeCut, testthat, gridGraphics,
clusterProfiler, msigdbr, DOSE, DO.db, reactome.db, flexclust,
BiocManager, InteractiveComplexHeatmap (>= 0.99.11), shiny,
shinydashboard, cola, hu6800.db, rmarkdown, genefilter,
gridtext, fpc
testthat, Rsubread, BiocStyle, knitr, lintr, spelling,
org.Mm.eg.db, stringr, kableExtra, shinythemes, shinyBS,
shinyjqui, shinyWidgets, shinyFiles, BiocGenerics,
RColorBrewer, fastmap (>= 1.1.0)
knitr, rmarkdown, BiocStyle, ggplot2, testthat (>= 3.0.0)
knitr, rmarkdown, BiocStyle, BiocSingular, RUnit,
BiocGenerics, ExpressionAtlas, DT, Biobase, GEOquery,
shinyWidgets, shinyjs, htmltools, shinyBS, sortable
knitr, RefManageR, rmarkdown, BiocStyle, testthat (>= 2.1.0),
covr, here, BiocManager, lobstr
knitr, ExperimentHub, rmarkdown, scater, uwot, ggalluvial,
ggpubr, ggrepel, cluster, testthat (>= 3.0.0)
TxDb.Hsapiens.UCSC.hg19.knownGene,
BSgenome.Hsapiens.UCSC.hg19, ggplot2, devtools, testthat (>=
2.1.0), roxygen2, knitr, readr, plyranges, circlize, IRanges,
SummarizedExperiment, rmarkdown
synapterdata (>= 1.13.2), xtable, testthat (>= 0.8), BRAIN,
BiocStyle, knitr
GenomicFeatures, GenomicRanges, IRanges, Rsamtools,
ShortRead, rtracklayer, RUnit, BiocStyle, knitr, rmarkdown,
systemPipeR
testthat, BiocStyle, knitr, rmarkdown, systemPipeR (>=
2.2.0), systemPipeRdata (>= 2.0.0), rhandsontable, zip, callr,
pushbar, fs, readr, R.utils, DESeq2, SummarizedExperiment,
glmpca, pheatmap, grid, ape, Rtsne, UpSetR, tidyr, esquisse (>=
1.1.0), cicerone
knitr, rmarkdown, BiocStyle, withr, testthat (>= 3.0.0)
BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva,
GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne,
S4Vectors, ggplot2, widyr, clusterProfiler, msigdbr, DESeq2,
broom, survival, boot, betareg, tidyHeatmap, pasilla, ggrepel,
devtools, functional, survminer, tidySummarizedExperiment,
markdown, uwot, matrixStats, igraph
rmarkdown, knitr, BiocStyle, testthat (>= 3.0.0)
knitr, rmarkdown, testthat, tximportData, org.Dm.eg.db,
DESeq2, fishpond, edgeR, limma, devtools
GenomicRanges, SummarizedExperiment, InteractionSet,
testthat, knitr, rmarkdown, BiocStyle
BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata (>=
0.25.1), ncdf4, testthat, pander, magrittr, rmarkdown,
multtest, MALDIquant, pheatmap, Spectra (>= 1.1.17),
MsBackendMgf, progress, signal
BSgenome.Drerio.UCSC.danRer10, knitr, testthat, ATACseqQC,
rmarkdown, BiocStyle
BiocStyle, ChemoSpec, cowplot, curl, DT (>= 0.5), GGally (>=
1.4.0), ggrepel (>= 0.8.0), gridExtra, knitr, plotly (>=
4.7.1), progressr, SummarizedExperiment, S4Vectors, testthat
(>= 2.0.0), writexl (>= 1.0), zip (>= 2.0.4)
parallel, knitr, rmarkdown, testthat, withr, readr,
BiocStyle, devtools
testthat, BiocStyle, knitr, rmarkdown, GenomicAlignments,
ComplexHeatmap, forcats, scales
knitr, rmarkdown, igraphdata, testthat (>= 3.0.0), vdiffr,
devtools, pander, plotly, randomcoloR
AnnotationDbi, AnnotationHub, BiocStyle, DEXSeq,
ExperimentHub, GenomicFeatures, S4Vectors, depmap, knitr,
rmarkdown
tools, tkWidgets, ALL, RUnit, golubEsets, BiocStyle, knitr
RUnit, BiocGenerics, Biobase, jsonlite, rmarkdown,
downloader, devtools (>= 1.4.1), usethis, BiocStyle, callr
BiocStyle, knitr, rmarkdown, testthat, tm, lubridate,
visNetwork, clipr, blastula, kableExtra, DiagrammeR,
SummarizedExperiment
BiocStyle, rmarkdown, knitr, AnnotationHub, GenomicRanges,
plyranges, sessioninfo
clusterProfiler, ggimage, ggplotify, ggupset, ggVennDiagram,
ReactomePA, org.Hs.eg.db, knitr, rmarkdown, testthat, tibble
RSQLite, scatterplot3d, gplots, fmcsR, snow, RPostgreSQL,
BiocStyle, knitr, knitcitations, knitrBootstrap, ChemmineDrugs,
png,rmarkdown, BiocManager,bibtex
knitr, rmarkdown, testthat, R.utils, BiocStyle
limma, edgeR, car, Rmixmod, ggplot2 (>= 3.0.0), gridExtra (>=
2.0.0), cowplot, BiocStyle, pamr, PoiClaClu, parathyroidSE,
knitr, htmltools, gtable, scales, e1071, rmarkdown, IRanges,
robustbase, glmnet, class, randomForestSRC, MatrixModels,
xgboost
knitr, rmarkdown, testthat, BiocStyle (>= 2.5.19),
MsBackendMgf
knitr, rmarkdown, testthat, sessioninfo, BiocStyle,
prettydoc, clusterProfiler, gson (>= 0.0.5), knitr,
rmarkdown, org.Hs.eg.db, testthat
testthat (>= 2.1.0), knitr, rmarkdown, BiocStyle, devtools,
ggplot2, gridExtra, ggpubr, grid, magick, hexbin
knitr, rmarkdown, testthat (>= 3.0.0), Seurat, BiocManager,
devtools
badger, BiocFileCache, BiocParallel, parallel, BiocStyle,
clusterProfiler, GenomicAlignments, grDevices, htmlwidgets,
knitr, org.Hs.eg.db, testthat (>= 3.0.0), tidyr,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm9.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Mmusculus.UCSC.mm9, BSgenome.Mmusculus.UCSC.mm10,
UpSetR, plyranges, scales, Matrix, consensusSeekeR
BiocStyle, clusterProfiler, karyoploteR, knitr, org.Hs.eg.db,
regioneR, Seurat, survival, survminer,
TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, BiocGenerics
BiocStyle, GEOquery, knitr, rmarkdown, markdown,
BiocFileCache, R.utils, ShortRead, uwot, testthat (>= 3.0.0)
BiocStyle, testthat, CytoML, flowWorkspace, ggrepel,
scattermore, pheatmap, ggpointdensity
knitr, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
BSgenome.Mmusculus.UCSC.mm9, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Mmusculus.UCSC.mm9.knownGene, org.Hs.eg.db, org.Mm.eg.db,
IHW, clusterProfiler, ReactomePA, DOSE, BiocFileCache,
ChIPseeker, testthat (>= 3.0.0), BiocStyle, csaw, BiocParallel,
topGO, robust, variancePartition, purrr
knitr, RUnit, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Hsapiens.UCSC.hg38, TxDb.Hsapiens.UCSC.hg19.knownGene,
org.Hs.eg.db, testthat (>= 3.0.0)
RUnit, BiocGenerics, RBGL, knitr, simpIntLists, shiny,
STRINGdb, BiocStyle, magick, rmarkdown, org.Hs.eg.db
spelling, rmarkdown, BiocStyle, testthat (>= 3.0.0), knitr
RMariaDB, org.Mm.eg.db, org.Hs.eg.db, BSgenome,
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce11, BSgenome.Dmelanogaster.UCSC.dm3
(>= 1.3.17), mirbase.db, FDb.UCSC.tRNAs,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Celegans.UCSC.ce11.ensGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1),
TxDb.Mmusculus.UCSC.mm10.knownGene (>= 3.4.7),
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,
TxDb.Hsapiens.UCSC.hg38.knownGene (>= 3.4.6),
SNPlocs.Hsapiens.dbSNP144.GRCh38, Rsamtools, pasillaBamSubset
(>= 0.0.5), GenomicAlignments (>= 1.15.7), ensembldb,
AnnotationFilter, RUnit, BiocStyle, knitr, markdown
knitr, rmarkdown, testthat, BiocStyle, BiocManager
testthat, methods, BiocStyle, knitr, rmarkdown
cowplot, testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown
testthat, covr, knitr, BiocStyle, sessioninfo, rmarkdown,
roxygen2, vegan, withr, extraDistr, ggalluvial, scales,
gridExtra, R.utils, RefManageR, flexdashboard, DT, circlize,
plotly, gtools, eulerr, openxlsx, jsonlite, pheatmap,
BiocParallel, progressr, future, doFuture, foreach
BiocStyle, knitr, rmarkdown, htmltools, RUnit
signal, waveslim, BiocStyle, knitr, rmarkdown, RUnit, bench
grid, ggplot2, ggpubr, knitr, rmarkdown, testthat, BiocStyle,
ExperimentHubData
BiocGenerics, graphics (>= 3.5), grDevices (>= 3.5), knitr
(>= 1.11), testthat (>= 2.2.1)
testthat, knitr, msdata, BiocStyle, rmarkdown, plotly, shiny,
shinyjs, DT, AnnotationHub
rmarkdown, BiocStyle, testthat (>= 2.1.0), parallel,
downloader, R.utils, doParallel, reshape2, JASPAR2022,
TFBSTools, motifmatchr, matrixStats, biomaRt, dorothea, viper,
stageR, BiocFileCache, png, htmltools, knitr, jpeg,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg19
rmarkdown, knitr, BiocStyle, testthat (>= 3.0.0), mia,
ggplot2, tidyr, dplyr, magrittr, tibble, purrr
rmarkdown, prettydoc, testthat, knitr, nlme, phangorn,
DECIPHER, randomForest, jsonlite, biomformat, scales, yaml,
withr, S4Vectors, purrr, seqmagick, glue, corrr, ggupset,
ggVennDiagram, gghalves, ggalluvial (>= 0.11.1), forcats, cli,
phyloseq, aplot, ggnewscale, ggside, ggh4x, hopach, parallel,
shadowtext, DirichletMultinomial
testthat, knitr, BiocStyle, rmarkdown, roxygen2, imputeLCMD,
impute, norm, pcaMethods, vsn, Matrix, preprocessCore,
missForest
testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19),
rmarkdown, rpx, mzR, msdata
SNPlocs.Hsapiens.dbSNP144.GRCh37,
SNPlocs.Hsapiens.dbSNP144.GRCh38,
SNPlocs.Hsapiens.dbSNP155.GRCh37,
SNPlocs.Hsapiens.dbSNP155.GRCh38,
BSgenome.Hsapiens.1000genomes.hs37d5,
BSgenome.Hsapiens.NCBI.GRCh38, BiocGenerics, S4Vectors,
rmarkdown, markdown, knitr, testthat (>= 3.0.0), UpSetR,
BiocStyle, covr, Rsamtools, MatrixGenerics, badger,
BiocParallel, GenomicFiles
DSS, Mus.musculus (>= 1.3.1), Homo.sapiens (>= 1.3.1),
org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db,
TxDb.Mmusculus.UCSC.mm10.knownGene, knitr, rmarkdown,
rtracklayer, testthat (>= 3.0.0), covr
grid, kableExtra, knitr, NanoStringDiff, pheatmap, plotly,
rlang, rmarkdown, ruv, RUVSeq, shiny, testthat, xlsx
AnnotationDbi, BiocStyle, Fletcher2013a, knitr, org.Hs.eg.db,
rmarkdown, testthat (>= 3.0.0), tidyverse
BiocStyle, biomaRt, bookdown, dnet, ggplot2, ggraph,
gprofiler2, knitr, mlrMBO, parallelMap, ParamHelpers,
Rgraphviz, smoof, supraHex, testthat
BiocStyle, covr, ggraph, knitr, patchwork, plotly, tidyverse,
testthat (>= 2.3.2)
testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, networkD3,
pander, rmarkdown, knitr, knitcitations, crayon, testthat,
markdown, BiocStyle
BiocStyle, BiocManager, testthat, shinyTree, knitr,
colourpicker, gtools, XML, R.utils, RColorBrewer, DT,
shinyWidgets, sass
SingleCellExperiment, Matrix, HDF5Array, msdata, ggplot2,
gplots, dplyr, limma, magrittr, DT, shiny, shinydashboard,
testthat, knitr, BiocStyle, rmarkdown, vsn, preprocessCore,
matrixStats, imputeLCMD, pcaMethods, impute, norm,
ComplexHeatmap
devtools, testthat, pander, Biobase, GenomicRanges, IRanges,
S4Vectors, RTCGA.rnaseq, RTCGA.clinical, RTCGA.mutations,
RTCGA.RPPA, RTCGA.mRNA, RTCGA.miRNASeq, RTCGA.methylation,
RTCGA.CNV, magrittr, tidyr
knitr, rmarkdown, SpatialFeatureExperiment, testthat (>=
3.0.0)
BiocStyle, knitr, rmarkdown, pkgdown, testthat
devtools, MutationalPatterns, RUnit, BiocManager,
BiocGenerics, BiocStyle, knitr, rmarkdown
curl, knitr, matrixStats, rmarkdown, Seurat, testthat (>=
3.0.0)
BiocStyle, DropletUtils, knitr, Matrix, rmarkdown, SFEData,
testthat (>= 3.0.0)
knitr, rmarkdown, openssl, crayon, egg, DESeq2, limma,
DoubleExpSeq, satuRn, edgeR, Rsubread, testthat (>= 3.0.0)
testthat (>= 2.1.0), knitr, BiocStyle, rmarkdown, R.utils,
spelling
BiocStyle, knitr, igraph, markdown, rmarkdown
BiocStyle, DropletTestFiles, ExperimentHub, HDF5Array, knitr,
RaggedExperiment, rhdf5, rmarkdown, Rsamtools, tinytest
breakaway, covr, knitr, rmarkdown, testthat, BiocStyle
RUnit, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP144.GRCh37, SIFT.Hsapiens.dbSNP132,
SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats,
ggplot2, BiocStyle
BiocSingular, BiocStyle, cowplot, dbscan, ExperimentHub,
hexbin, knitr, rmarkdown, scater, scattermore, scran, SFEData,
sparseMatrixStats, testthat (>= 3.0.0), vdiffr
AnnotationDbi, Biostrings, rmarkdown, BiocFileCache, ggplot2,
ComplexHeatmap, circlize, ggbio, gridExtra, knitr, testthat,
BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Hsapiens.UCSC.hg38.knownGene, ExperimentHub (>= 1.15.3),
DESeq2, NanoporeRNASeq, purrr, apeglm, utils, DEXSeq
reticulate, knitr, rmarkdown, BiocStyle, testthat
testthat (>= 3.0.0), BiocStyle, covr, codetools, knitr,
rmarkdown, dplyr, ggplot2, spelling
BiocStyle, knitr, mockery, rmarkdown, testthat, webmockr
DSS, covr, knitr, rmarkdown, markdown, rlang, scmeth,
pkgdown, roxygen2, testthat, QDNAseq.hg19, QDNAseq.mm10,
BiocStyle
BiocStyle, foreach, knitr, pcaMethods, rmarkdown, testthat,
VGAM
knitr, rmarkdown, BiocStyle, sessioninfo, scRNAseq, scater,
SingleCellExperiment, mclust, testthat (>= 3.0.0)
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg19,
scales, ggpubr, knitr (>= 1.23), rmarkdown (>= 1.14), devtools
(>= 2.3.0), BiocStyle, testthat
ComplexHeatmap, covr, knitr, rmarkdown, testthat, ggrepel,
BiocStyle, BiocManager, remotes, shiny, Seurat, gprofiler2,
purrr
testthat (>= 3.0.0), sessioninfo, knitr, BiocStyle,
rmarkdown, covr
biomaRt, BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Mmusculus.UCSC.mm10, BiocStyle, crisprBwa (>= 0.99.7),
knitr, rmarkdown, Rbowtie, Rbwa, RCurl, testthat
AnnotationHub, BiocStyle, BSgenome.Hsapiens.UCSC.hg38, knitr,
rmarkdown, rtracklayer, testthat, utils
EBcoexpress, testthat, EBarrays, GeneNet, mclust, minqa,
SummarizedExperiment, Biobase, knitr, rmarkdown, BiocStyle,
edgeR
BiocStyle, cowplot, DropletUtils, knitr, reshape2, rmarkdown,
testthat (>= 3.0.0)
knitr, tximportData, testthat (>= 3.0.0)
clusterProfiler, dplyr, europepmc, ggupset, knitr, rmarkdown,
org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi,
ggplotify, ggridges, grDevices, gridExtra, ggrepel (>= 0.9.0),
ggstar, treeio, scales, tidytree, ggtreeExtra, tidydr
RUnit, knitr, rmarkdown, ggplot2, ggstance, gridExtra
testthat, knitr, rmarkdown, BiocStyle, a4Base, kableExtra,
methods, grDevices
Matrix, BiocStyle, knitr, rmarkdown, magrittr, kableExtra,
testthat (>= 3.0.0)
BiocStyle, knitr, RefManageR, rmarkdown, ggridges, httr,
readr, pheatmap, rtracklayer, AnnotationHub
AnnotationHub (>= 2.22), BSgenome (>= 1.58),
BSgenome.Mmusculus.UCSC.mm10, testthat, knitr, rmarkdown,
markdown, zeallot, rmdformats, bio3d (>= 2.4), signalHsmm (>=
1.5), tidyverse (>= 1.3), covr, patchwork
knitr, rmarkdown, GOstats, GO.db, BiocGenerics, pROC, RUnit
testthat, knitr, rmarkdown, reactome.db, AnnotationDbi,
parallel, org.Mm.eg.db, limma, GEOquery, msigdbr, aggregation
knitr, rmarkdown, ggplot2, BiocGenerics, stats, flowClust
testthat (>= 2.0.0), rmarkdown, knitr, dplyr, covr, ggplot2,
ggrepel, BiocStyle, microbenchmark, magick, purrr, pheatmap,
viridis
aplot, cluster, knitr, MASS, mdendro, prettydoc, pvclust,
rmarkdown, testthat (>= 3.0.0), treeio, yulab.utils
emojifont, ggimage, ggplotify, shadowtext, grDevices, knitr,
prettydoc, rmarkdown, testthat, tibble, glue
testthat (>= 2.1.0), zoo, DESeq2, edgeR, limma, beachmat,
MASS, statmod, ggplot2, bench, BiocParallel, knitr, rmarkdown,
BiocStyle, TENxPBMCData, muscData, scran, Matrix
SparseM (>= 0.36), XML, RBGL, RUnit, cluster, BiocStyle,
knitr
DO.db, DT, knitr, RBGL, testthat, rmarkdown, dplyr, Gviz,
Rsamtools, rtracklayer, graph, ggbio, DelayedArray,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, BiocStyle
LoomExperiment, SummarizedExperiment, SingleCellExperiment,
S4Vectors, methods, testthat (>= 3.0.0), knitr, rmarkdown,
BiocStyle
testthat, covr, BiocStyle, knitr, rmarkdown, scRNAseq,
TENxPBMCData, scater, DelayedArray, HDF5Array, RColorBrewer,
viridis, htmltools
BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo,
testthat (>= 3.0.0), scRNAseq, scater
BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo,
testthat (>= 3.0.0), nullrangesData
RUnit, BiocStyle, knitr, rmarkdown, MotifDb, seqLogo
CATALYST, grid, BiocStyle, knitr, rmarkdown, markdown,
testthat
RUnit, knitr, BiocStyle, gwascat, rmarkdown, snpStats,
VariantAnnotation, GenomeInfoDb, ensembldb, EnsDb.Hsapiens.v75,
Rsamtools, GenomicFiles (>= 1.13.6)
BiocStyle, covr, knitr, rmarkdown, ggplot2, sessioninfo,
testthat (>= 3.0.0)
BiocStyle, cvms, data.table, dplyr, ggplot2, gridExtra,
knitr, rmarkdown, sabre, spelling, testthat (>= 3.0.0)
scRNAseq, scater, BiocStyle, knitr, rmarkdown
BiocStyle, covr, earth, future, igraph (>= 1.2.7), iml,
kernlab, knitr, MASS, rmarkdown, RSNNS, testthat (>= 3.0.0),
xgboost
doFuture, future, knitr, rmarkdown, roxygen2, tinytest
multcomp, gridExtra, knitr, BiocStyle, RefManageR,
sessioninfo, rmarkdown, testthat, tidyverse, plotly, msdata,
MSnbase, matrixStats, MsCoreUtils, covr
testthat, knitr, rmarkdown, DNAcopy, RcppHMM, AnnotationHub,
ExperimentHub, nullrangesData, excluderanges, ensembldb,
EnsDb.Hsapiens.v86, microbenchmark, patchwork, plotgardener,
magrittr, tidyr, cobalt
testthat (>= 3.1.4), jsonlite, knitr, rmarkdown
knitr, org.Hs.eg.db, org.Mm.eg.db, testthat, BiocStyle,
SingleCellExperiment, celldex, rmarkdown, AnnotationDbi
flowWorkspaceData, knitr, rmarkdown, markdown, testthat,
utils, tools, parallel, ggcyto, CytoML, flowStats(>= 4.5.2),
MASS
remotes, knitr, BiocStyle, covr, markdown, rmarkdown, here,
testthat (>= 3.0.0), piggyback, badger, magick, desc,
hrbrthemes, Cairo, yulab.utils, haven, GenomeInfoDbData, ape,
phytools, rphylopic, TreeTools, RColorBrewer, ggimage, OmaDB
pRolocdata, knitr, BiocStyle (>= 2.5.19), rmarkdown, testthat
(>= 3.0.0)
BiocGenerics, BiocStyle, biosigner, CLL, knitr, omicade4,
rmarkdown, testthat
BiocStyle, knitr, rmarkdown, igraph, ComplexHeatmap, viridis,
testthat (>= 0.3), knitr, rmarkdown, BiocManager,
org.Mm.eg.db, msigdbr, KEGGREST, reactome.db
rmarkdown, BiocStyle, GenomeInfoDb, knitr, testthat (>=
3.0.0)
BiocManager, BiocStyle, cowplot, DT, htmltools, knitr,
pander, rmarkdown, spelling, stringr, testthat (>= 3.0.0),
tidyverse
BiocStyle, knitr, testthat, cluster, SingleCellExperiment
knitr, rmarkdown, BiocStyle, circlize, scales, Seurat, scater
BiocStyle, snifter, cowplot, biomaRt, knitr, scRNAseq,
robustbase, rmarkdown, testthat, Biobase
knitr, testthat, rmarkdown, BiocStyle, signatureSearchData,
DT
BiocStyle, knitr, kableExtra, testthat (>= 3.0.0), edgeR,
limma
BiocStyle, testthat (>= 3.0.0), knitr, ggplot2
testthat, Rsubread, BiocStyle, knitr, lintr, spelling,
org.Mm.eg.db, stringr, kableExtra, shinythemes, shinyBS,
shinyjqui, shinyWidgets, shinyFiles, BiocGenerics,
RColorBrewer, fastmap (>= 1.1.0), harmony
pkgdown, BiocStyle, hexbin, knitr, rmarkdown, testthat, covr
RefManageR, BiocStyle, knitr, testthat (>= 3.0.0),
sessioninfo, rmarkdown, markdown
av, knitr, rmarkdown, BiocStyle, BiocSingular, RUnit,
BiocGenerics, DESeq2, distinct, HDF5Array, kableExtra, magick,
ExpressionAtlas, DT, Biobase, GEOquery, pROC, rols,
shinyWidgets, shinyjs, htmltools, shinyBS, sortable
knitr, ExperimentHub, rmarkdown, scater, uwot, ggpubr,
ggrepel, cluster, testthat (>= 3.0.0)
BiocStyle, ggtree, labdsv, covr, knitr, rmarkdown, testthat
(>= 3.0.0), xml2
BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva,
GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne, ggplot2,
widyr, clusterProfiler, msigdbr, DESeq2, broom, survival, boot,
betareg, tidyHeatmap, pasilla, ggrepel, devtools, functional,
survminer, tidySummarizedExperiment, markdown, uwot,
matrixStats, igraph, EGSEA
biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit,
org.Hs.eg.db, BiocStyle, knitr, VariantAnnotation, httr,
htmltools, rmarkdown, motifStack
Biostrings, ggplot2, ggtree, igraph, knitr, rmarkdown,
phangorn, prettydoc, testthat, tidyr, vroom, xml2, yaml, purrr
knitr, rmarkdown, testthat, tximportData,
TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), limma,
edgeR, DESeq2 (>= 1.11.6), rhdf5, jsonlite, matrixStats,
Matrix, eds
knitr, yaml, testthat (>= 3.0.0), rmarkdown, BiocStyle,
clusterProfiler
anndata, BiocFileCache, BiocStyle, covr, HDF5Array, knitr,
pkgload, rmarkdown, rhdf5, scRNAseq, spelling, testthat, withr
BiocStyle, BiocGenerics, knitr, pander, rmarkdown,
tweeDEseqCountData, edgeR, kableExtra, RUnit
testthat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20120608, BiocStyle, knitr
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db,
org.Sc.sgd.db, org.At.tair.db, KEGG.db, RUnit,
TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db, org.Hs.eg.db,
reactome.db, AnnotationForge, graph, BiocStyle, knitr
IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation,
Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge,
rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR,
Biostrings, SummarizedExperiment
RUnit, BiocGenerics, Biobase, RJSONIO, rmarkdown
Gviz(>= 1.7.4), RUnit, BiocGenerics, BiocStyle, knitr,
rmarkdown
testthat, knitr, BiocStyle, VanillaICE (>= 1.31.3),
flowWorkspace (>= 3.9.66), flowCore, ncdfFlow, shiny,
testthat, devtools, Kmisc
reactome.db, BSgenome.Ecoli.NCBI.20080805, org.Ce.eg.db,
org.Hs.eg.db, BSgenome.Celegans.UCSC.ce10,
BSgenome.Drerio.UCSC.danRer7, EnsDb.Hsapiens.v75,
EnsDb.Hsapiens.v79, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, gplots, RUnit, BiocStyle,
rtracklayer, knitr
clusterProfiler, DOSE, ReactomePA, org.Hs.eg.db, knitr,
BiocStyle, rmarkdown
RSQLite, scatterplot3d, gplots, fmcsR, snow, RPostgreSQL,
BiocStyle, knitr, knitcitations, knitrBootstrap, ChemmineOB (>=
1.3.8), ChemmineDrugs, grid, gridExtra, png
limma, edgeR, car, Rmixmod, ggplot2 (>= 2.0.0), gridExtra (>=
2.0.0), BiocStyle, pamr, sparsediscrim, PoiClaClu,
curatedOvarianData, parathyroidSE, knitr, klaR, gtable, scales,
e1071, rmarkdown, IRanges
testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust,
dendsort, HilbertCurve
testthat, knitr, BiocStyle, vsn, pheatmap, RColorBrewer,
airway, pasilla (>= 0.2.10), DESeq
testthat (>= 0.3), knitr, markdown, circlize (>= 0.3.1)
ALL, BiocStyle, airway, hgu95av2.db, testthat
limma, knitr, rmarkdown, RUnit, BiocGenerics
knitr, shiny, DT, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db,
org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db,
org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db,
org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db,
org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db
RUnit, BiocGenerics, Rgraphviz, XML, RCytoscape, RBGL, knitr
org.Mm.eg.db, org.Hs.eg.db, BSgenome,
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce2, BSgenome.Dmelanogaster.UCSC.dm3 (>=
1.3.17), mirbase.db, FDb.UCSC.tRNAs,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1),
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,
TxDb.Hsapiens.UCSC.hg38.knownGene,
SNPlocs.Hsapiens.dbSNP141.GRCh38, Rsamtools, pasillaBamSubset
(>= 0.0.5), GenomicAlignments, RUnit, BiocStyle, knitr
Biobase, AnnotationDbi (>= 1.21.1), annotate, Biostrings (>=
2.25.3), Rsamtools (>= 1.13.53), SummarizedExperiment (>=
0.1.5), GenomicAlignments, rtracklayer, BSgenome,
GenomicFeatures, Gviz, VariantAnnotation, AnnotationHub, DESeq,
DEXSeq, edgeR, KEGGgraph, BiocStyle, digest, RUnit,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Scerevisiae.UCSC.sacCer2,
KEGG.db, hgu95av2.db, org.Hs.eg.db, org.Mm.eg.db,
org.Sc.sgd.db, pasilla, pasillaBamSubset,
TxDb.Athaliana.BioMart.plantsmart22,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg19.knownGene
TxDb.Hsapiens.UCSC.hg19.knownGene,
BSgenome.Hsapiens.UCSC.hg19, LungCancerLines, org.Hs.eg.db,
RUnit
knitr, testthat (>= 0.3), circlize (>= 0.3.1), ComplexHeatmap
(>= 1.3.0), markdown
testthat, IlluminaHumanMethylation450kanno.ilmn12.hg19,
knitr, minfiData, MEALData, BiocStyle
testthat, zoo, knitr (>= 1.1.0), rols, Rdisop, pRoloc,
pRolocdata (>= 1.7.1), msdata, roxygen2, rgl, BiocStyle,
imputeLCMD, norm, gplots
Homo.sapiens, Rattus.norvegicus, BSgenome.Hsapiens.UCSC.hg19,
biomaRt, rtracklayer, RUnit
BSgenome.Hsapiens.UCSC.hg19, RUnit, BiocGenerics, BiocStyle,
knitr, R.utils
testthat, pander, RTCGA.rnaseq, RTCGA.clinical,
RTCGA.mutations
knitr, rmarkdown, BiocStyle, mzR, xcms, msdata, isobar,
MALDIquant (>= 1.12), MALDIquantForeign, readBrukerFlexData,
rTANDEM, synapter, synapterdata, IPPD, Rdisop, OrgMassSpecR,
BRAIN, rols, hpar, GO.db, org.Hs.eg.db, biomaRt, RColorBrewer,
ggplot2, reshape2, xtable, lattice, mzID, pRoloc, pRolocdata,
MSGFplus, MSGFgui, MSnID, msmsTests, msmsEDA, corrplot,
Heatplus, gplots, VennDiagram
knitr, BiocStyle, TxDb.Hsapiens.UCSC.hg19.knownGene,
BSgenome.Hsapiens.UCSC.hg19, testthat
Category, GEOquery, GOstats, Gviz,
IlluminaHumanMethylation450kmanifest, RPMM, RefFreeEWAS,
RnBeads.hg19, XML, annotate, biomaRt, foreach, doParallel,
ggbio, isva, mclust, mgcv, minfi, nlme, org.Hs.eg.db,
org.Mm.eg.db, org.Rn.eg.db, quadprog, rtracklayer, sva,
wateRmelon, wordcloud, argparse
BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, rmarkdown,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle, knitr, rmarkdown, SNPhoodData, corrplot
parallel, RUnit, BiocGenerics, knitr, Rcpp, SNPRelate
annotate, AnnotationDbi, GenomicFeatures, BiocStyle, knitr,
rmarkdown, jsonlite, rhdf5
RUnit, BiocGenerics, gageData, DEGraph, plotrix, org.Hs.eg.db
RUnit, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20110815,
SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132,
SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats,
ggplot2, BiocStyle
R.oo (>= 1.19.0), R.utils (>= 2.1.0), AffymetrixDataTestFiles
BiocStyle, RCurl, biomaRt, cellHTS2, knitr, knitcitations,
RefManageR, testthat, ggplot2
limma, DESeq2, airway, ggplot2, plyr, GenomicRanges, edgeR,
qvalue, knitr, data.table, MSnbase, SummarizedExperiment
Category, ggplot2, GO.db, gridBase, vsn (>= 2.0.35)
BiocStyle, KEGG.db, knitr, org.Hs.eg.db, pathview,
ReactomePA, RDAVIDWebService
BiocStyle, EBSeq, DESeq, DESeq2 (>= 1.1.31), baySeq (>=
2.2.0), genefilter, NOISeq, TCC, samr, NBPSeq (>= 0.3.0)
XML, UniProt.ws, RUnit, BiocGenerics, BiocStyle, knitr,
rmarkdown
devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6),
BiocStyle, rmarkdown (>= 0.3.3), testthat
biovizBase, bumphunter (>= 1.7.6), derfinderData (>= 0.99.0),
devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6),
BiocStyle, org.Hs.eg.db, rmarkdown (>= 0.3.3), testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle, biovizBase, devtools (>= 1.6), derfinderData (>=
0.99.0), ggplot2, knitcitations (>= 1.0.1), knitr (>= 1.6),
rmarkdown (>= 0.3.3), testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle (>= 1.8.0), BSgenome (>= 1.38.0),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl,
GenomicFeatures (>= 1.22.5), knitr, rmarkdown, RnaSeqTutorial
(>= 0.7.0), RUnit (>= 0.4.31)
RCurl, snow, BiocStyle, knitcitations, knitr, knitrBootstrap
knitr, BiocStyle, EnsDb.Hsapiens.v75 (>= 0.99.7), RUnit,
shiny
rmarkdown, BiocStyle, knitr, GO.db, BiocParallel, png, DT,
doParallel
geuvStore, knitr, rmarkdown, BiocStyle, RUnit, GGtools,
Homo.sapiens, IRanges, erma, GenomeInfoDb, gwascat, geuvPack
parallel, crayon, RUnit, knitr, BiocGenerics
BiocGenerics, genomationData, knitr, knitrBootstrap,
RColorBrewer, rmarkdown, RUnit
RUnit, knitr, BiocStyle, DNAcopy, stats, BSgenome, Biostrings
colorspace, EBImage, gridExtra, knitr, phylobase, phytools,
phangorn, rmarkdown, scales, testthat
vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db,
lungExpression, org.Hs.eg.db, GSEABase, penalized, gss, MASS,
boot, rpart
DO.db, DT, utils, knitr, RBGL, RUnit, GGtools
affy, AnnotationDbi, BiasedUrn, Biobase, ellipse, GO.db,
illuminaio, locfit, MASS, org.Hs.eg.db, splines, statmod (>=
1.2.2), vsn
knitr, RUnit, BiocGenerics, AnnotationDbi, org.Hs.eg.db,
GOstats, Category
IlluminaHumanMethylation450kmanifest (>= 0.2.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19 (>= 0.2.1),
minfiData (>= 0.4.1), FlowSorted.Blood.450k (>= 1.0.1), RUnit,
digest, data.table
RUnit, BiocGenerics, MotifDb, RColorBrewer, BiocStyle, knitr
xcms (>= 1.43.3), CAMERA, Risa (>= 1.0.0), knitr, Heatplus,
pcaMethods, sp
testthat, pRolocdata (>= 1.5.8), roxygen2, synapter, xtable,
tsne, BiocStyle, hpar, dplyr, GO.db, AnnotationDbi
testthat, knitr, BiocStyle, rmarkdown, RColorBrewer, biomaRt,
estrogen, affy, hgu95av2, hgu95av2cdf, limma, foreach, doSNOW,
parallel
knitr, RColorBrewer, sqldf, BiocGenerics, testthat,
BiocStyle, jsonlite
xtable, GO.db, knitr (>= 1.1.0), BiocStyle, testthat
ape, RUnit, BiocStyle, knitr, rmarkdown, biomaRt,
BiocParallel
biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit,
BiocGenerics, BiocStyle, knitr
faahKO, msdata, ncdf, multtest, rgl, MassSpecWavelet (>=
1.5.2), RANN, RUnit, parallel
DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db,
org.Sc.sgd.db, org.At.tair.db, KEGG.db, RUnit,
TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db, org.Hs.eg.db,
reactome.db, AnnotationForge, graph, EnsDb.Hsapiens.v75,
BiocStyle, knitr
RCurl, biomaRt, httr, GenomeInfoDb, affy, hgu95av2.db,
human.db0, org.Hs.eg.db, Homo.sapiens, hom.Hs.inp.db, GO.db,
RSQLite, XML, BiocStyle, knitr
knitr (>= 1.12), rmarkdown, BiocGenerics, RUnit
Gviz(>= 1.7.4), BiocStyle, knitr, rmarkdown, testthat
testthat, knitr, BiocStyle, VanillaICE (>= 1.31.3),
BiocCheck, MASS, oligoClasses, dplyr, tidyr, ggplot2
EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6),
hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice,
RUnit, org.Sc.sgd.db, GOstats, GO.db
reactome.db, BSgenome.Ecoli.NCBI.20080805,
BSgenome.Hsapiens.UCSC.hg19, org.Ce.eg.db, org.Hs.eg.db,
BSgenome.Celegans.UCSC.ce10, BSgenome.Drerio.UCSC.danRer7,
EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v79,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, gplots, BiocStyle,
rtracklayer, knitr, testthat, motifStack, MMDiffBamSubset
clusterProfiler, ReactomePA, org.Hs.eg.db, knitr, BiocStyle,
rmarkdown
knitr, rmarkdown, testthat, BiocStyle, ggplot2, plsgenomics
testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust,
dendsort, HilbertCurve, Cairo, png, jpeg, tiff
knitr, BiocStyle, Biobase, roxygen2, RColorBrewer, devtools,
xtable
BiocGenerics, Biobase, testthat, BiocStyle, Prostar
knitr, biomaRt, RUnit, BiocStyle, BiocParallel, coda,
Nozzle.R1
testthat, knitr, BiocStyle, vsn, pheatmap, RColorBrewer,
airway, IHW, tximport, tximportData, readr, pasilla (>=
0.2.10), DESeq
knitr, RUnit, BiocGenerics,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
parallel, snow, BiocStyle, knitr, R.utils, downloader
SNPRelate, logistf, survey, CompQuadForm, RUnit,
BiocGenerics, knitr
BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, RMySQL,
roxygen2, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
RUnit, BiocGenerics, Rgraphviz, XML, RBGL, knitr
BiocStyle, chipseq (>= 1.21.2), testthat, knitr
Biobase, AnnotationDbi (>= 1.21.1), annotate, Biostrings (>=
2.25.3), Rsamtools (>= 1.13.53), SummarizedExperiment (>=
0.1.5), Matrix, GenomicAlignments, rtracklayer, BSgenome,
GenomicFeatures, Gviz, VariantAnnotation, AnnotationHub,
DESeq2, DEXSeq, edgeR, KEGGgraph, BiocStyle, digest, RUnit,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Scerevisiae.UCSC.sacCer2,
KEGG.db, hgu95av2.db, org.Hs.eg.db, org.Mm.eg.db,
org.Sc.sgd.db, pasilla, pasillaBamSubset,
TxDb.Athaliana.BioMart.plantsmart22,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg19.knownGene
h5vcData, SummarizedExperiment, GenomicRanges, genefilter,
BiocStyle, knitr, rmarkdown
parallel, knitr, gdsfmt (>= 1.2.2), SNPRelate (>= 1.1.6)
HarmanData, BiocGenerics, BiocStyle, knitr, rmarkdown, RUnit,
missMethyl, RColorBrewer, bladderbatch, limma, minfi, lumi,
msmsEDA, affydata, minfiData
knitr, testthat (>= 1.0.0), ComplexHeatmap (>= 1.7.0),
markdown, RColorBrewer, RCurl, GetoptLong
ggplot2, scales, DESeq, DESeq2, airway, testthat, Matrix,
BiocStyle, knitr, rmarkdown, devtools
testthat, RColorBrewer, wesanderson, scales, gridExtra,
BiocStyle, knitr, rmarkdown, airway, pasilla, DESeq, locfdr,
tidyr
XVector, GenomicRanges, GenomicFeatures, GenomicAlignments,
BSgenome.Celegans.UCSC.ce2, RUnit
BiocStyle, knitr, rmarkdown, seqc, gplots, RColorBrewer
testthat, zoo, knitr (>= 1.1.0), rols, Rdisop, pRoloc,
pRolocdata (>= 1.7.1), msdata, roxygen2, rgl, BiocStyle,
imputeLCMD, norm, gplots, shiny
MEALData, minfiData, knitr, rmarkdown, testthat, methylumi
Homo.sapiens, Rattus.norvegicus, BSgenome.Hsapiens.UCSC.hg19,
AnnotationHub, FDb.UCSC.tRNAs, rtracklayer, biomaRt, RUnit
PSCBS, RUnit, BiocStyle, BiocGenerics, knitr
readr, org.Hs.eg.db, dplyr, stringr, knitr, fdrtool
gplots,RMassBankData, xcms (>= 1.37.1), CAMERA, ontoCAT,
RUnit, enviPat
Category, GEOquery, GOstats, Gviz,
IlluminaHumanMethylation450kmanifest, RPMM, RefFreeEWAS,
RnBeads.hg19, XML, annotate, biomaRt, foreach, doParallel,
ggbio, isva, mclust, mgcv, minfi, nlme, org.Hs.eg.db,
org.Mm.eg.db, org.Rn.eg.db, quadprog, rtracklayer, sva,
wateRmelon, wordcloud, argparse, glmnet, impute
BiocStyle, knitr, rmarkdown, SNPhoodData, corrplot, pryr
BiocParallel, digest, crayon, RUnit, Biobase, BiocGenerics,
knitr, Rcpp, SNPRelate, TxDb.Hsapiens.UCSC.hg19.knownGene
annotate, AnnotationDbi, hgu95av2.db, GenomicFeatures,
TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle, knitr, rmarkdown,
digest, jsonlite, rhdf5, airway
testthat, png, BiocStyle, rmarkdown, devtools
RUnit, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20110815,
SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132,
SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats,
ggplot2, BiocStyle
RUnit, BiocStyle, org.Hs.eg.db,
BSgenome.Hsapiens.1000genomes.hs37d5,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP144.GRCh37,
MafDb.1Kgenomes.phase3.hs37d5, MafDb.ExAC.r0.3.1.snvs.hs37d5,
phastCons100way.UCSC.hg19, PolyPhen.Hsapiens.dbSNP131,
SIFT.Hsapiens.dbSNP137
R.oo (>= 1.20.0), R.utils (>= 2.2.0), AffymetrixDataTestFiles
RUnit, BiocGenerics, BiocStyle, golubEsets, hu6800.db,
BioMark
AnnotationHub, BiocStyle, KEGG.db, knitr, org.Hs.eg.db,
pathview, ReactomePA
testthat (>= 0.9.1), microbenchmark (>= 1.4.2), BiocStyle,
knitr, rmarkdown
XML, UniProt.ws, BiocStyle, knitr, rmarkdown, testthat
BiocStyle, biovizBase, devtools (>= 1.6), derfinderData (>=
0.99.0), derfinderPlot, DESeq2, ggplot2, knitcitations (>=
1.0.1), knitr (>= 1.6), limma, rmarkdown (>= 0.3.3), testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle, knitr, rmarkdown, curatedOvarianData, ROCR, pROC,
RUnit, simulatorZ, proxy
BiocStyle (>= 1.9.2), BSgenome (>= 1.39.0),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl,
GenomicFeatures (>= 1.23.15), knitr, rmarkdown, RnaSeqTutorial
(>= 0.9.0), RUnit (>= 0.4.31)
BiocStyle, knitr, rmarkdown, EnsDb.Hsapiens.v75 (>= 0.99.7),
RUnit, shiny, Gviz, BSgenome.Hsapiens.UCSC.hg19
testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus,
TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown
testthat, knitr, rmarkdown, OrganismDbi (>= 1.13.9),
Mus.musculus, Biobase
testthat, roxygen2, knitr, Biobase, SummarizedExperiment,
antiProfilesData, hgu133plus2.db, Mus.musculus
testthat, flowWorkspaceData, RSVGTipsDevice, knitr, ggcyto
geuvPack, geuvStore2, Rsamtools, knitr, rmarkdown, ggbio,
BiocStyle, Homo.sapiens, RUnit, multtest
RUnit, knitr, BiocStyle, rmarkdown, DNAcopy, stats, BSgenome,
Biostrings
vsn, BSgenome.Hsapiens.UCSC.hg19, Homo.sapiens,
TxDb.Hsapiens.UCSC.hg19.knownGene, chipseq,
TxDb.Mmusculus.UCSC.mm9.knownGene, knitr, BiocStyle, testthat,
EnsDb.Hsapiens.v75
testthat, flowWorkspaceData, knitr, rmarkdown, flowStats,
openCyto, flowViz
Biostrings, colorspace, EBImage, emojifont, knitr, rmarkdown,
scales, testthat
BiocStyle, hgu133plus2.db, org.Hs.eg.db, SPIA (>= 2.2),
topologyGSA (>= 1.4.0), clipper, ALL, testthat
testthat (>= 1.0.0), knitr, RColorBrewer, markdown,
ComplexHeatmap (>= 1.9.7)
RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown, similaRpeak
annotate, BiocGenerics, biomformat, knitr, gss, RUnit, vegan,
interactiveDisplay
IlluminaHumanMethylation450kmanifest (>= 0.2.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19 (>= 0.2.1),
minfiData (>= 0.4.1), FlowSorted.Blood.450k (>= 1.0.1), RUnit,
digest, BiocStyle, knitr, rmarkdown
pRolocdata, knitr, BiocStyle, rmarkdown, devtools
testthat, pRolocdata (>= 1.9.4), roxygen2, synapter, xtable,
tsne, BiocStyle, hpar, dplyr, GO.db, AnnotationDbi
breastCancerUPP, breastCancerNKI, breastCancerVDX,
breastCancerTRANSBIG, breastCancerMAINZ, breastCancerUNT
knitr, testthat, BiocStyle, rmarkdown, airway, org.Hs.eg.db
BiocStyle, knitr, Gviz, rtracklayer, biomaRt,
BSgenome.Hsapiens.UCSC.hg38
grid, GenomeInfoDb, Rsamtools, BiocStyle, knitr, rmarkdown,
zoo, RUnit, BiocInstaller, BSgenome, RSQLite, RMySQL
BiocStyle, biovizBase, bumphunter (>= 1.7.6), Cairo,
derfinderPlot (>= 1.3.2), devtools (>= 1.6), DT, DESeq, edgeR,
ggbio (>= 1.13.13), ggplot2, grid, gridExtra, IRanges, mgcv,
pasilla, pheatmap, RColorBrewer,
TxDb.Hsapiens.UCSC.hg19.knownGene, whisker
GO.db, knitr (>= 1.1.0), BiocStyle, testthat, lubridate, DT,
rmarkdown
RUnit, BiocGenerics, BiocStyle, faahKO, xcms, CAMERA
BiocStyle, cowplot, cluster, destiny, knitr, monocle,
mvoutlier, rmarkdown, Rtsne, testthat, magrittr
limSolve, testthat, knitr, BiocStyle, org.Mm.eg.db, DESeq2,
monocle, S4Vectors
BiocStyle, knitr, rmarkdown, testthat, readr, clipr
RUnit, BiocGenerics, BiocStyle, plotrix, knitr, msqc1 (>=
0.99.7)
biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit,
org.Hs.eg.db, BiocGenerics, BiocStyle, knitr, VariantAnnotation
knitr, testthat, tximportData,
TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), limma,
edgeR, DESeq2 (>= 1.11.6)
edgeR, dendextend, tximport, tximportData, ballgown, DESeq2,
readr, knitr, BiocStyle
faahKO, msdata, ncdf4, multtest, rgl, MassSpecWavelet (>=
1.5.2), RANN, RUnit, parallel
biomaRt, httr, GenomeInfoDb, Biostrings, affy, hgu95av2.db,
human.db0, org.Hs.eg.db, Homo.sapiens, hom.Hs.inp.db, GO.db,
BiocStyle, knitr
RUnit, BiocGenerics, Biobase, RJSONIO, rmarkdown, knitr,
devtools (>= 1.4.1)
base64enc, knitr (>= 1.12), rmarkdown (>= 1.2), BiocGenerics,
RUnit, yaml, htmltools
flowWorkspace (>= 3.9.66), flowCore, ncdfFlow, shiny,
testthat, devtools, Kmisc, flowWorkspaceData
reactome.db, BSgenome.Ecoli.NCBI.20080805,
BSgenome.Hsapiens.UCSC.hg19, org.Ce.eg.db, org.Hs.eg.db,
BSgenome.Celegans.UCSC.ce10, BSgenome.Drerio.UCSC.danRer7,
EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v79,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, gplots, BiocStyle,
rtracklayer, knitr, testthat, trackViewer, motifStack,
OrganismDbi
clusterProfiler, ReactomePA, org.Hs.eg.db, knitr, BiocStyle,
rmarkdown, testthat
RSQLite, scatterplot3d, gplots, fmcsR, snow, RPostgreSQL,
BiocStyle, knitr, knitcitations, knitrBootstrap, ChemmineOB (>=
1.3.8), ChemmineDrugs, grid, gridExtra, png,rmarkdown
testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust,
dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster
biomaRt, RUnit, BiocStyle, BiocGenerics, org.Hs.eg.db,
DESeq2, AnnotationDbi, BiocParallel
testthat, knitr, BiocStyle, vsn, pheatmap, RColorBrewer,
airway, IHW, tximport, tximportData, readr, pasilla (>= 0.2.10)
BiocStyle, clusterProfiler, knitr, org.Hs.eg.db, testthat,
UpSetR
AnnotationHub, BiocInstaller, BiocStyle, clusterProfiler,
DOSE, knitr, org.Hs.eg.db, testthat
BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, RMySQL,
roxygen2, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene,
rmarkdown
BiocStyle, chipseq (>= 1.21.2), LSD (>= 3.0.0), genefilter
(>= 1.54.2), ggplot2 (>= 2.1.0), testthat, knitr
Biobase, AnnotationDbi (>= 1.21.1), annotate, Biostrings (>=
2.25.3), Rsamtools (>= 1.13.53), SummarizedExperiment (>=
0.1.5), Matrix, GenomicAlignments, rtracklayer, BSgenome,
GenomicFeatures, Gviz, VariantAnnotation, AnnotationHub,
DESeq2, DEXSeq, edgeR, KEGGgraph, BiocStyle, digest, RUnit,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Scerevisiae.UCSC.sacCer2,
KEGG.db, hgu95av2.db, org.Hs.eg.db, org.Mm.eg.db,
org.Sc.sgd.db, pasilla, pasillaBamSubset,
TxDb.Athaliana.BioMart.plantsmart22,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
BSgenome.Mmusculus.UCSC.mm10,
TxDb.Mmusculus.UCSC.mm10.knownGene,
RNAseqData.HNRNPC.bam.chr14, hgu95av2probe
Matrix, h5vcData, SummarizedExperiment, GenomicRanges,
genefilter, BiocStyle, knitr, rmarkdown
BiocInstaller (>= 1.20.3), knitr, rmarkdown, graph
BiocStyle, knitr, rmarkdown, gplots, RColorBrewer
knitr, rmarkdown, testthat, lme4(>= 1.0), roxygen2(> 4.0.0),
numDeriv, car, gdata, lattice, GGally, GSEABase, NMF,
TxDb.Hsapiens.UCSC.hg19.knownGene, rsvd, limma, RColorBrewer
class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL,
hgu95av2.db, som, rgl, hu6800.db, lattice, caret (>= 5.07),
golubEsets, ada, keggorthology, kernlab, mboost, party
testthat, pryr, gridExtra, microbenchmark, zoo, knitr (>=
1.1.0), rols, Rdisop, pRoloc, pRolocdata (>= 1.7.1), msdata (>=
0.12.2), roxygen2, rgl, rpx, AnnotationHub, BiocStyle,
rmarkdown, imputeLCMD, norm, gplots, shiny
BiocStyle, testthat, knitr, GenomicFiles, HDF5Array,
rmarkdown
MEALData, minfiData, knitr, rmarkdown, testthat, methylumi,
omicade4, iClusterPlus, GEOquery
BSgenome (>= 1.40.0), BiocStyle (>= 2.0.3), biomaRt (>=
2.28.0), BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.0),
TxDb.Hsapiens.UCSC.hg19.knownGene (>= 3.2.2), rtracklayer (>=
1.32.2)
BiocStyle, knitr, Oncotree, testthat (>= 1.0.0), rmarkdown,
bookdown
foreach, doParallel, BiocStyle, knitr, rmarkdown, png,
GGally, gridExtra, fgsea, Gviz
org.Hs.eg.db, org.Mm.eg.db, biomaRt, knitr, BiocStyle,
AnnotationDbi, energy
PSCBS, RUnit, BiocStyle, BiocGenerics, knitr, getopt,
rtracklayer
BSgenome.Mmusculus.UCSC.mm9, BSgenome.Celegans.UCSC.ce10,
BSgenome.Dmelanogaster.UCSC.dm3, org.Mm.eg.db, org.Ce.eg.db,
org.Dm.eg.db, testthat
BiocGenerics, RUnit, knitr, igraph, RColorBrewer, paxtoolsr,
rmarkdown
BiocStyle, clusterProfiler, knitr, org.Hs.eg.db, testthat
knitr, rmarkdown, BiocStyle, mzR, xcms, msdata, isobar,
MALDIquant (>= 1.12), MALDIquantForeign, readBrukerFlexData,
rTANDEM, synapter, synapterdata, IPPD, Rdisop, OrgMassSpecR,
BRAIN, rols, hpar, GO.db, org.Hs.eg.db, biomaRt, RColorBrewer,
ggplot2, reshape2, xtable, lattice, mzID, pRoloc, pRolocdata,
MSGFplus, MSGFgui, MSnID, msmsTests, msmsEDA, corrplot,
Heatplus, gplots, VennDiagram, genefilter
IRanges, GenomicRanges, Matrix, ShortRead, graph, data.table,
RUnit
BiocGenerics, BiocStyle, testthat, knitr, igraph, scran,
BiocParallel, digest, crayon, RUnit, Biobase, BiocGenerics,
knitr, Rcpp, SNPRelate
annotate, AnnotationDbi, hgu95av2.db, GenomicFeatures,
TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle, knitr, rmarkdown,
digest, jsonlite, rhdf5, airway, RUnit
EnsDb.Hsapiens.v75 (>= 0.99.7), shiny (>= 0.13.2.9005), DT
(>= 0.1.67), rtracklayer, BiocStyle (>= 2.1.23), knitr (>=
1.12), rmarkdown, testthat, covr
R.oo (>= 1.20.0), R.utils (>= 2.4.0), AffymetrixDataTestFiles
BiocStyle, rmarkdown, testthat (>= 0.10.0)
BioMark, RUnit, BiocGenerics, BiocStyle, golubEsets,
hu6800.db, knitr, rmarkdown
crossmeta, knitr, rmarkdown, testthat, lydata,
knitr, BiocStyle, testthat, biomaRt, ggbio
BiocStyle, knitr, diagram, testthat, scRNAseq
AnnotationHub, BiocStyle, GSEABase, KEGG.db, knitr,
org.Hs.eg.db, pathview, ReactomePA, testthat, topGO
devtools, roxygen2, testthat, covr, knitr, rmarkdown,
BiocCheck, BiocStyle, BiocInstaller, BiocParallel, readr,
RISmed
testthat (>= 0.9.1), BiocStyle, knitr, rmarkdown
testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus,
TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown,
BiocStyle
testthat, knitr, rmarkdown, reactome.db, AnnotationDbi,
parallel
Rgraphviz, flowViz, flowStats, testthat, flowWorkspace,
flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra
flowQBData, FlowRepositoryR, xlsx, RUnit, BiocGenerics
edgeR, knitr, grid, AnnotationDbi, org.Mm.eg.db, org.Hs.eg.db
RUnit, rentrez, rmarkdown, knitr, BiocStyle
BiocGenerics, genomationData, knitr, knitrBootstrap,
RColorBrewer, rmarkdown
knitr, RUnit, org.Mm.eg.db, cluster, clusterProfiler,
BiocStyle
IlluminaHumanMethylation450kmanifest (>= 0.2.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19 (>= 0.2.1),
minfiData (>= 0.18.0), minfiDataEPIC, FlowSorted.Blood.450k (>=
1.0.1), RUnit, digest, BiocStyle, knitr, rmarkdown
testthat, xcms, BiocStyle, knitr, rmarkdown, msPurityData
msdata (>= 0.3.5), RUnit, mzID, BiocStyle, knitr, XML
testthat, rmarkdown, pRolocdata (>= 1.9.4), roxygen2,
synapter, xtable, tsne, hexbin, rgl, BiocStyle, hpar (>=
1.15.3), dplyr, GO.db, AnnotationDbi
testthat, knitr, parallel, devtools, rmarkdown, gplots, covr,
car
BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, testthat, BiocStyle,
knitr, rmarkdown
AnnotationDbi, BiocStyle, DESeq2, devtools (>= 1.6),
EnsDb.Hsapiens.v79, GenomicFeatures, knitcitations, knitr (>=
1.6), org.Hs.eg.db, regionReport, rmarkdown (>= 0.9.5),
testthat
BiocGenerics, BiocStyle, CAMERA, faahKO, knitr, multtest,
rmarkdown, RUnit, xcms
limSolve, limma, testthat, knitr, BiocStyle, org.Mm.eg.db,
DESeq2, monocle, S4Vectors, ggplot2
knitr, rmarkdown, testthat, readr, clipr
RUnit, BiocGenerics, BiocStyle, plotrix, knitr, msqc1 (>=
1.0.0)
knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr,
scater
BiocStyle, knitr (>= 1.1.0), faahKO, msdata, ncdf4, rgl,
RUnit
RUnit, BiocStyle, knitr, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, phastCons100way.UCSC.hg19,
motifStack, MotifDb, trackViewer
RUnit, knitr, BiocStyle, grasp2db, BiocInstaller
IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation,
Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge,
rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR,
Biostrings, SummarizedExperiment, ExperimentHub
BiocInstaller, Biobase, BSgenome.Celegans.UCSC.ce2,
BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Hsapiens.UCSC.hg38.masked,
BSgenome.Mmusculus.UCSC.mm10, BSgenome.Rnorvegicus.UCSC.rn5,
BSgenome.Scerevisiae.UCSC.sacCer1,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
SNPlocs.Hsapiens.dbSNP144.GRCh38,
XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, hgu95av2probe, RUnit
WGCNA, testthat, knitr, rmarkdown, BiocStyle, GOSemSim,
GSEABase
reactome.db, BSgenome.Ecoli.NCBI.20080805,
BSgenome.Hsapiens.UCSC.hg19, org.Ce.eg.db, org.Hs.eg.db,
BSgenome.Celegans.UCSC.ce10, BSgenome.Drerio.UCSC.danRer7,
EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v79,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, gplots, BiocStyle,
rtracklayer, knitr, rmarkdown, BiocStyle, testthat,
trackViewer, motifStack, OrganismDbi
RSQLite, scatterplot3d, gplots, fmcsR, snow, RPostgreSQL,
BiocStyle, knitr, knitcitations, knitrBootstrap, ChemmineOB (>=
1.3.8), ChemmineDrugs, png,rmarkdown
limma, edgeR, car, Rmixmod, ggplot2 (>= 2.2.0), gridExtra (>=
2.0.0), BiocStyle, pamr, sparsediscrim, PoiClaClu,
curatedOvarianData, parathyroidSE, knitr, klaR, gtable, scales,
e1071, rmarkdown, IRanges
testthat, flowWorkspaceData (>= 2.11.1), knitr, ggcyto
testthat, knitr, BiocStyle, vsn, pheatmap, RColorBrewer, IHW,
tximport, tximportData, readr, pbapply, airway, pasilla (>=
0.2.10)
CompQuadForm, logistf, survey, SNPRelate, GWASdata, RUnit,
knitr
AnnotationHub, BiocInstaller, clusterProfiler, DOSE, knitr,
org.Hs.eg.db, prettydoc, testthat
RUnit, BiocGenerics, RBGL, knitr, simpIntLists, shiny,
STRINGdb
BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19,
phastCons100way.UCSC.hg19, VariantAnnotation,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle, DESeq2, limma, testthat, knitr, rmarkdown
h5vcData, SummarizedExperiment (>= 1.5.6), GenomicRanges,
BiocStyle
knitr, testthat (>= 1.0.0), ComplexHeatmap (>= 1.13.2),
markdown, RColorBrewer, RCurl, GetoptLong
knitr, BiocStyle, Biobase, roxygen2, devtools, xtable,
gridExtra, RColorBrewer, seqLogo, aRxiv
gplots, knitr, rmarkdown, BiocStyle, gProfileR, MASS, dplyr,
pander, devtools, testthat
testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19,
IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData,
MEALData, BiocStyle
breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG,
breastCancerUNT, breastCancerUPP, breastCancerVDX, pbcmc,
MIGSAdata
testthat, pryr, reshape2, gridExtra, microbenchmark, zoo,
knitr (>= 1.1.0), rols, Rdisop, pRoloc, pRolocdata (>= 1.7.1),
msdata (>= 0.12.2), roxygen2, rgl, rpx, AnnotationHub,
BiocStyle, rmarkdown, imputeLCMD, norm, gplots, shiny
BiocStyle, testthat, knitr, GenomicFiles, HDF5Array,
RaggedExperiment, rmarkdown
MEALData, minfi, minfiData, knitr, rmarkdown, testthat,
methylumi, omicade4, iClusterPlus, GEOquery,
MultiAssayExperiment
BSgenome (>= 1.40.0), BiocStyle (>= 2.0.3), biomaRt (>=
2.28.0), BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.0),
BSgenome.Hsapiens.1000genomes.hs37d5 (>= 0.99.1),
TxDb.Hsapiens.UCSC.hg19.knownGene (>= 3.2.2), rtracklayer (>=
1.32.2), testthat
RUnit, BiocStyle, knitr, BSgenome.Mmusculus.UCSC.mm10,
testthat
foreach, doParallel, BiocStyle, knitr, rmarkdown, png,
GGally, gridExtra, ExpressionAtlas, ggforce, fgsea
PSCBS, RUnit, BiocStyle, BiocGenerics, knitr, getopt,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
HTSanalyzeR, RUnit, BiocGenerics, BiocStyle, ff
Category, GEOquery, GOstats, Gviz,
IlluminaHumanMethylation450kmanifest, RPMM, RefFreeEWAS,
RnBeads.hg19, XML, annotate, biomaRt, foreach, doParallel,
ggbio, isva, mclust, mgcv, minfi, nlme, org.Hs.eg.db,
org.Mm.eg.db, org.Rn.eg.db, quadprog, rtracklayer, sva,
wateRmelon, wordcloud, argparse, glmnet, impute, GLAD,
IlluminaHumanMethylation450kanno.ilmn12.hg19, scales
BiocGenerics, BiocStyle, testthat, knitr, igraph,
annotate, AnnotationDbi, hgu95av2.db, GenomicFeatures,
TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle, knitr, rmarkdown,
digest, jsonlite, rhdf5, HDF5Array (>= 1.4.8), airway, RUnit
testthat, knitr, roxygen2, devtools, rvest, xml2, BiocStyle,
animation, pander
png, BiocStyle, rmarkdown, devtools, maftools, parmigene,
c3net, minet, dnet, Biobase, affy, testthat, limma, pathview,
clusterProfiler, igraph, supraHex
EnsDb.Hsapiens.v75 (>= 0.99.7), shiny (>= 0.13.2.9005), DT
(>= 0.1.67), rtracklayer, BiocStyle (>= 2.1.23), knitr (>=
1.12), rmarkdown, testthat, covr, pander
RUnit, LungCancerLines (>= 0.0.6), RBGL, graph, gmapR (>=
1.13.4)
AnnotationHub, GSEABase, KEGG.db, knitr, org.Hs.eg.db,
prettydoc, pathview, ReactomePA, testthat, topGO
devtools, roxygen2, testthat, covr, knitr, rmarkdown,
BiocCheck, BiocStyle, BiocInstaller, BiocParallel, readr,
RISmed, ggplot2
ncdfFlow, testthat, BiocGenerics, knitr, edgeR, limma,
glmnet, BiocStyle, flowStats
devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6),
BiocStyle (>= 2.3.12), rmarkdown (>= 0.3.3), testthat
biovizBase, bumphunter (>= 1.7.6), derfinderData (>= 0.99.0),
devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6),
BiocStyle (>= 2.3.12), org.Hs.eg.db, rmarkdown (>= 0.3.3),
testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle (>= 2.3.12), biovizBase, devtools (>= 1.6),
derfinderData (>= 0.99.0), derfinderPlot, DESeq2, ggplot2,
knitcitations (>= 1.0.1), knitr (>= 1.6), limma, RefManageR,
rmarkdown (>= 0.3.3), testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle, knitr, rmarkdown, EnsDb.Hsapiens.v75 (>= 0.99.8),
shiny, testthat, BSgenome.Hsapiens.UCSC.hg19, ggbio (>=
1.24.0), Gviz (>= 1.20.0)
testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus,
TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown,
BiocStyle, EnsDb.Mmusculus.v79
testthat, flowWorkspaceData, RSVGTipsDevice, knitr, ggcyto,
parallel
geuvPack, geuvStore2, Rsamtools, knitr, rmarkdown, ggbio,
BiocStyle, Homo.sapiens, RUnit, multtest, gwascat
Biostrings, colorspace, EBImage, emojifont, knitr, prettydoc,
rmarkdown, scales, testthat
testthat (>= 1.0.0), knitr, RColorBrewer, markdown,
ComplexHeatmap (>= 1.9.7), Cairo, png, jpeg, tiff
BiocStyle, knitr, testthat, magrittr,
BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset
knitr, BiocStyle, matrixStats, msd16s (>= 0.109.1), etec16s,
testthat, gss
msdata (>= 0.15.1), RUnit, mzID, BiocStyle, knitr, XML
testthat, knitr, rmarkdown, lintr, lassoshooting
testthat, rmarkdown, pRolocdata (>= 1.9.4), roxygen2,
synapter, xtable, Rtsne, rgl, BiocStyle, hpar (>= 1.15.3),
dplyr, GO.db, AnnotationDbi
BiocStyle, knitr, Gviz, rtracklayer, ggplot2,
BSgenome.Hsapiens.UCSC.hg38, testthat
knitr, rmarkdown, pander, BiocStyle,
BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37,
BSgenome.Ecoli.NCBI.20080805
AnnotationDbi, BiocStyle (>= 2.3.20), DESeq2, devtools (>=
1.6), EnsDb.Hsapiens.v79, GenomicFeatures, knitcitations, knitr
(>= 1.6), org.Hs.eg.db, regionReport (>= 1.9.4), rmarkdown (>=
0.9.5), testthat
biovizBase, bumphunter (>= 1.7.6), derfinderPlot (>= 1.3.2),
devtools (>= 1.6), DT, DESeq, edgeR, ggbio (>= 1.13.13),
ggplot2, grid, gridExtra, IRanges, mgcv, pasilla, pheatmap,
RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene, whisker
MSnbase, Biostrings, BiocStyle, testthat, knitr, covr
BiocStyle, scRNAseq, knitr, rmarkdown, testthat
testthat, knitr, BiocStyle, limSolve, org.Mm.eg.db, DESeq2,
monocle, S4Vectors, Rtsne, pracma
testthat, scran, progress, lme4, pscl, scDD, knitr,
rmarkdown, BiocStyle, covr, S4Vectors, SummarizedExperiment,
cowplot
Biostrings, ggtree (>= 1.7.5), knitr, prettydoc, testthat
knitr, rmarkdown, testthat, tximportData,
TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), limma,
edgeR, DESeq2 (>= 1.11.6), rhdf5, rjson
BiocStyle, knitr (>= 1.1.0), faahKO, msdata, ncdf4, rgl,
microbenchmark, RUnit
utils, BiocStyle, knitr, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, phastCons100way.UCSC.hg19,
MotifDb, trackViewer, testthat
Biobase, GEOquery, devtools, zoo, DT, NMF, plotly, BiocStyle,
knitr, rmarkdown, testthat
reactome.db, org.Hs.eg.db, WGCNA, GOSemSim, GSEABase,
testthat, knitr, rmarkdown, BiocStyle, airway, DESeq2, boot,
targetscan.Hs.eg.db, Hmisc,
testthat, knitr, rmarkdown, lattice, latticeExtra,
rbenchmark, gplots, gridExtra, hgu133plus2.db, ineq
BiocGenerics, tools, foreach, BatchJobs, BBmisc, doParallel,
Rmpi, GenomicRanges, RNAseqData.HNRNPC.bam.chr14,
TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation,
Rsamtools, GenomicAlignments, ShortRead, codetools, RUnit,
BiocStyle, knitr
testthat, knitr, BiocStyle, rmarkdown, BiocCheck, MASS
flowWorkspace (>= 3.9.66), flowCore, ncdfFlow, shiny,
testthat, devtools, flowWorkspaceData
knitr, rmarkdown, RTCGAToolbox, testthat, BiocStyle
reactome.db, BSgenome.Ecoli.NCBI.20080805,
BSgenome.Hsapiens.UCSC.hg19, org.Ce.eg.db, org.Hs.eg.db,
BSgenome.Celegans.UCSC.ce10, BSgenome.Drerio.UCSC.danRer7,
EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v79,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, gplots, BiocStyle,
rtracklayer, knitr, rmarkdown, testthat, trackViewer,
motifStack, OrganismDbi
testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust,
dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster,
dendextend (>= 1.0.1)
testthat, flowWorkspaceData (>= 2.11.1), knitr
BiocStyle, knitr, rmarkdown, DESeq2, pcaExplorer, testthat,
ggplot2
testthat, knitr, BiocStyle, vsn, pheatmap, RColorBrewer, IHW,
apeglm, ashr, tximport, tximportData, readr, pbapply, airway,
pasilla (>= 0.2.10)
Matrix, HDF5Array, genefilter, SummarizedExperiment, airway,
pryr, knitr, BiocStyle
testthat, HDF5Array, knitr, rmarkdown, covr, BiocStyle,
microbenchmark, profmem
BiocStyle, knitr, testthat, DT, GenomicInteractions, webshot,
rtracklayer, covr
ALL, BiocStyle, airway, hgu95av2.db, knitr
hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools,
testthat
org.Mm.eg.db, org.Hs.eg.db, BSgenome,
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce2, BSgenome.Dmelanogaster.UCSC.dm3 (>=
1.3.17), mirbase.db, FDb.UCSC.tRNAs,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1),
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,
TxDb.Hsapiens.UCSC.hg38.knownGene,
SNPlocs.Hsapiens.dbSNP141.GRCh38, Rsamtools, pasillaBamSubset
(>= 0.0.5), GenomicAlignments, ensembldb, RUnit, BiocStyle,
knitr
BiocStyle, RProtoBuf, httpuv, knitr, rmarkdown, testthat,
ggbio, ggplot2, BSgenome.Hsapiens.UCSC.hg19, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
parallel, knitr, gdsfmt (>= 1.2.2), SNPRelate (>= 1.1.6),
ggplot2
XVector, GenomicRanges, Rsamtools, GenomicAlignments,
GenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset,
RUnit
knitr, parallel, testthat, BiocStyle, rmarkdown
knitr, rmarkdown, testthat, lme4(>= 1.0), roxygen2(> 4.0.0),
numDeriv, car, gdata, lattice, GGally, GSEABase, NMF,
TxDb.Hsapiens.UCSC.hg19.knownGene, rsvd, limma, RColorBrewer,
BiocStyle
testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19,
IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData,
BiocStyle, rmarkdown
testthat, pryr, gridExtra, microbenchmark, zoo, knitr (>=
1.1.0), rols, Rdisop, pRoloc, pRolocdata (>= 1.7.1), msdata (>=
0.12.2), roxygen2, rgl, rpx, AnnotationHub, BiocStyle (>=
2.5.19), rmarkdown, imputeLCMD, norm, gplots, shiny
BiocStyle, testthat, knitr, R.rsp, GenomicFiles, HDF5Array,
RaggedExperiment, rmarkdown, UpSetR, survival, survminer
BiocStyle, rmarkdown, knitr, htmltools, DT, org.Hs.eg.db,
gplots, GenomicRanges
org.Hs.eg.db, org.Mm.eg.db, biomaRt (>= 2.30.0), knitr,
BiocStyle, AnnotationDbi, energy
PSCBS, RUnit, BiocStyle, knitr, optparse,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
BiocStyle, Homo.sapiens, knitr, MultiAssayExperiment, readr,
rmarkdown
HTSanalyzeR, RUnit, BiocGenerics, ff, BiocStyle, knitr,
rmarkdown
Fletcher2013b, pheatmap, knitr, rmarkdown, BiocStyle, RUnit,
BiocGenerics
Category, GOstats, Gviz,
IlluminaHumanMethylation450kmanifest, RPMM, RefFreeEWAS,
RnBeads.hg19, XML, annotate, biomaRt, foreach, doParallel,
ggbio, isva, mclust, mgcv, minfi, nlme, org.Hs.eg.db,
org.Mm.eg.db, org.Rn.eg.db, quadprog, rtracklayer, qvalue, sva,
wateRmelon, wordcloud, argparse, glmnet, GLAD,
IlluminaHumanMethylation450kanno.ilmn12.hg19, scales,
missMethyl, impute, shiny, shinyjs, plotrix, hexbin, RUnit
testthat, knitr, rmarkdown, visNetwork, ggplot2, ggrepel,
gridExtra, digest, doParallel
digest, crayon, RUnit, knitr, Rcpp, SNPRelate, Biobase,
BiocParallel, BiocGenerics, VariantAnnotation
testthat, BiocStyle, knitr, scRNAseq, magrittr, Rtsne
annotate, AnnotationDbi, hgu95av2.db, GenomicFeatures,
TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle, knitr, rmarkdown,
digest, jsonlite, rhdf5, HDF5Array (>= 1.5.8), airway, RUnit
png, BiocStyle, rmarkdown, devtools, maftools, parmigene,
c3net, minet, dnet, Biobase, affy, testthat, pathview,
clusterProfiler, igraph, supraHex
RUnit, limma, plyr, knitr, BiocGenerics, rmarkdown
DESeq2, airway, BiocStyle, knitr, rmarkdown, testthat
RUnit, bsseqData, BiocStyle, rmarkdown, knitr,
BiocStyle, devtools (>= 1.13.3), knitr, rmarkdown, testthat
BiocStyle, knitr, testthat, scRNAseq, MAST
BiocInstaller, devtools, roxygen2, testthat, covr, knitr,
rmarkdown, BiocCheck, BiocStyle, BiocParallel, readr, RISmed,
ggplot2, metagenomeSeq, phyloseq, ape
BiocStyle, knitr, readr, rmarkdown, testthat
devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6),
BiocStyle (>= 2.5.19), rmarkdown (>= 0.3.3), testthat
biovizBase, bumphunter (>= 1.7.6), derfinderData (>= 0.99.0),
devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6),
BiocStyle (>= 2.5.19), org.Hs.eg.db, rmarkdown (>= 0.3.3),
testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle (>= 2.5.19), biovizBase, devtools (>= 1.6),
derfinderData (>= 0.99.0), derfinderPlot, DESeq2, ggplot2,
knitcitations (>= 1.0.1), knitr (>= 1.6), limma, RefManageR,
rmarkdown (>= 0.3.3), testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle, knitr, rmarkdown, EnsDb.Hsapiens.v75 (>= 0.99.8),
shiny, testthat, BSgenome.Hsapiens.UCSC.hg19, ggbio (>=
1.24.0), Gviz (>= 1.20.0), magrittr
testthat, roxygen2, knitr, Biobase, GenomicRanges, S4Vectors,
IRanges, SummarizedExperiment, antiProfilesData,
hgu133plus2.db, Mus.musculus, BiocStyle, Homo.sapiens
RUnit, rentrez (>= 1.2.1), knitr, rmarkdown, BiocStyle
testthat, flowWorkspaceData, knitr, rmarkdown, flowStats,
openCyto, flowViz, ggjoy
Biostrings, colorspace, EBImage, emojifont, knitr, prettydoc,
rmarkdown, testthat
knitr, RUnit, org.Mm.eg.db, cluster, clusterProfiler,
pheatmap, BiocStyle, testthat
RUnit, BiocGenerics, similaRpeak, knitr, BiocStyle, rmarkdown
BiocStyle, knitr, rmarkdown, testthat, org.Hs.eg.db
flowWorkspaceData, knitr, testthat, utils, tools, parallel,
ggcyto
testthat, rmarkdown, pRolocdata (>= 1.9.4), roxygen2,
synapter, xtable, rgl, BiocStyle (>= 2.5.19), hpar (>= 1.15.3),
dplyr, GO.db, AnnotationDbi
AnnotationDbi, BiocStyle (>= 2.5.19), DESeq2, devtools (>=
1.6), EnsDb.Hsapiens.v79, GenomicFeatures, knitcitations, knitr
(>= 1.6), org.Hs.eg.db, regionReport (>= 1.9.4), rmarkdown (>=
0.9.5), testthat
knitr, testthat, Rtsne, org.Mm.eg.db, org.Hs.eg.db, BiocStyle
BiocStyle, beachmat, cowplot, cluster, destiny, knitr,
monocle, mvoutlier, rmarkdown, Rtsne, testthat, magrittr
BiocStyle, DT, ggplot2, knitr, miniUI, NMF, plotly, reshape2,
rmarkdown, scran, scRNAseq, shiny, testthat, visNetwork
testthat, BiocStyle, knitr, beachmat, HDF5Array, limSolve,
org.Mm.eg.db, DESeq2, monocle, Rtsne, pracma, Biobase, irlba,
aroma.light
BiocStyle, covr, cowplot, knitr, limSolve, lme4, progress,
pscl, testthat, rmarkdown, S4Vectors, scDD, scran, mfa,
phenopath, zinbwave, BASiCS
knitr, rmarkdown, BiocStyle, methods, Biobase, edgeR, limma,
DEXSeq
topdownrdata (>= 0.2), knitr, ranger, testthat, BiocStyle
BiocStyle, knitr (>= 1.1.0), faahKO, msdata, ncdf4, rgl,
microbenchmark, RUnit, pander
knitr, rmarkdown, testthat, matrixStats, magrittr, scRNAseq,
ggplot2, biomaRt, BiocStyle, Rtsne
Biobase, BiocStyle, devtools, DT, GEOquery, knitr, NMF,
plotly, R2HTML, rbokeh, rmarkdown, Rtsne, testthat, zoo
biomaRt, httr, GenomeInfoDb (>= 1.16.0), Biostrings, affy,
hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens,
hom.Hs.inp.db, GO.db, BiocStyle, knitr
reactome.db, org.Hs.eg.db, WGCNA, methods, GOSemSim,
testthat, knitr, rmarkdown, BiocStyle, airway, DESeq2, boot,
targetscan.Hs.eg.db, Hmisc
Biobase, S4Vectors, IRanges, GenomicRanges, Rsamtools,
AnnotationDbi, oligoClasses, oligo, affyPLM, flowClust, affy,
DESeq2, MSnbase, annotate, RUnit
knitr, dbplyr, DBI, org.Hs.eg.db, MultiAssayExperiment,
BiocStyle, ontoProc, ontologyPlot, pogos, ggplot2,
GenomeInfoDb, restfulSE, BiocFileCache,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg18.knownGene
BiocGenerics, tools, foreach, BatchJobs, BBmisc, doParallel,
Rmpi, GenomicRanges, RNAseqData.HNRNPC.bam.chr14,
TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation,
Rsamtools, GenomicAlignments, ShortRead, codetools, RUnit,
BiocStyle, knitr, batchtools
testthat, knitr, rmarkdown, BiocStyle, Rtsne, viridis, rgl
RUnit, BiocGenerics, igraph, stringi, stringr
RSQLite, scatterplot3d, gplots, fmcsR, snow, RPostgreSQL,
BiocStyle, knitr, knitcitations, knitrBootstrap, ChemmineOB (>=
1.16.1), ChemmineDrugs, png,rmarkdown
limma, edgeR, car, Rmixmod, ggplot2 (>= 2.2.0), gridExtra (>=
2.0.0), BiocStyle, pamr, PoiClaClu, parathyroidSE, knitr,
htmltools, gtable, scales, e1071, rmarkdown, IRanges,
randomForest, robustbase, mlogit, mnlogit, glmnet
BiocStyle, AnnotationDbi, knitr, rmarkdown, testthat
testthat, knitr, rmarkdown, vsn, pheatmap, RColorBrewer, IHW,
apeglm, ashr, tximport, tximportData, readr, pbapply, airway,
pasilla (>= 0.2.10)
Matrix, HDF5Array, genefilter, SummarizedExperiment, airway,
pryr, knitr, BiocStyle, RUnit
testthat, HDF5Array (>= 1.7.10), knitr, rmarkdown, covr,
BiocStyle, microbenchmark, profmem
testthat, beachmat, knitr, BiocStyle, rmarkdown, HDF5Array
BiocStyle, knitr, testthat, DT, GenomicInteractions, webshot,
rtracklayer, R.utils, covr
shiny, visNetwork, knitr, BiocStyle, rmarkdown, testthat,
biomaRt, org.Hs.eg.db, AnnotationDbi, GOSemSim
CompQuadForm, logistf, poibin, survey, SNPRelate, GWASdata,
testthat, knitr
RMariaDB, org.Mm.eg.db, org.Hs.eg.db, BSgenome,
BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),
BSgenome.Celegans.UCSC.ce2, BSgenome.Dmelanogaster.UCSC.dm3 (>=
1.3.17), mirbase.db, FDb.UCSC.tRNAs,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1),
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,
TxDb.Hsapiens.UCSC.hg38.knownGene,
SNPlocs.Hsapiens.dbSNP144.GRCh38, Rsamtools, pasillaBamSubset
(>= 0.0.5), GenomicAlignments (>= 1.15.7), ensembldb, RUnit,
BiocStyle, knitr
BiocStyle, knitr, rmarkdown, FlowSOM, Rtsne, ggplot2
h5vcData, SummarizedExperiment (>= 1.9.6), GenomicRanges,
BiocStyle
Biobase, BiocCheck, BiocInstaller, BiocStyle, circlize, covr,
cowplot, curatedMetagenomicData, dendextend, devtools, ggplot2,
gridExtra, haven, phyloseq, rmarkdown, roxygen2, stats,
testthat
breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG,
breastCancerUNT, breastCancerUPP, breastCancerVDX, mGSZ, pbcmc,
MIGSAdata
testthat, rmarkdown, knitr, BiocStyle, BSgenome,
BSgenome.Hsapiens.UCSC.hg19, ggplot2 (>= 2.2.1)
BiocStyle,knitr, rmarkdown, htmltools, DT, org.Hs.eg.db,
gplots, GenomicRanges, kableExtra
foreach, doParallel, BiocStyle, knitr, rmarkdown, png,
GGally, gridExtra, ExpressionAtlas, ggforce, fgsea, pathview,
tidyr
PSCBS, BiocStyle, BiocParallel, knitr, optparse,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, testthat
Gviz, RUnit, BiocStyle, knitr, rmarkdown
RUnit, RColorBrewer, BiocStyle, knitr, rmarkdown
Biobase, BiocStyle, BiocParallel, doParallel, DT, foreach,
igraph, knitr, RcisTarget.hg19.motifDBs.cisbpOnly.500bp,
rmarkdown, testthat, visNetwork
knitr, rmarkdown, BiocStyle, mzR, xcms, msdata, isobar,
MALDIquant (>= 1.12), MALDIquantForeign, readBrukerFlexData,
rTANDEM, synapter, synapterdata, IPPD, Rdisop, OrgMassSpecR,
SummarizedExperiment, BRAIN, rols, hpar, GO.db, org.Hs.eg.db,
e1071, biomaRt, RColorBrewer, ggplot2, reshape2, xtable,
lattice, mzID, pRoloc, pRolocdata, MSGFplus, MSGFgui, MSnID,
msmsTests, msmsEDA, DEP, corrplot, beanplot, Heatplus, gplots,
VennDiagram, protViz, genefilter
digest, crayon, RUnit, knitr, Rcpp, SNPRelate, Biobase,
BiocParallel, BiocGenerics, Rsamtools, VariantAnnotation
testthat, BiocStyle, knitr, rmarkdown, scRNAseq, magrittr,
Rtsne
annotate, AnnotationDbi, hgu95av2.db, GenomicFeatures,
TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle, knitr, rmarkdown,
digest, jsonlite, rhdf5, HDF5Array (>= 1.7.5), airway, RUnit
BiocStyle, curatedTCGAData, devtools, knitr, magrittr, readr,
RTCGAToolbox (>= 2.7.5), testthat
knitr, rmarkdown, S4Vectors, plotly, scales, tidyr, ggplot2,
GSEABase, DESeq2, BiocGenerics
knitr, DT, Homo.sapiens, GO.db, org.Hs.eg.db, ensembldb,
EnsDb.Hsapiens.v75, testthat, BiocParallel, BiocStyle,
SummarizedExperiment, UpSetR, ggplot2
BiocStyle, EnrichmentBrowser, airway, knitr, rmarkdown
knitr, GenomicFiles, EnsDb.Hsapiens.v75, testthat, biovizBase
(>= 1.27.2), Gviz, AnnotationFilter, ensembldb
testthat, Matrix, SuperLearner, earth, gam, nnls, airway,
rmarkdown, knitr, BiocStyle
testthat, BiocStyle, knitr, rmarkdown, Matrix, devtools
BiocGenerics, BiocStyle, minfiData, parallel,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
testthat, knitr, rmarkdown, BiocStyle, SuperLearner, Matrix,
DBI, biotmleData (>= 1.1.1)
BiocStyle, knitr, testthat, scRNAseq, MAST, Rtsne
AnnotationHub, GSEABase, KEGG.db, knitr, org.Hs.eg.db,
prettydoc, pathview, ReactomePA, testthat
XML, BiocStyle, knitr, rmarkdown, testthat, UniProt.ws
biovizBase (>= 1.27.2), bumphunter (>= 1.7.6), derfinderData
(>= 0.99.0), devtools (>= 1.6), knitcitations (>= 1.0.1), knitr
(>= 1.6), BiocStyle (>= 2.5.19), org.Hs.eg.db, rmarkdown (>=
0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
nbconvertR, testthat, FNN, tidyr, SingleCellExperiment
BiocStyle, knitr, rmarkdown, HDCytoData, CATALYST
BiocStyle (>= 2.7.8), BSgenome (>= 1.39.0),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl, knitr,
rmarkdown, RUnit (>= 0.4.31)
testthat, flowWorkspaceData, knitr, ggcyto, parallel
RTN, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
colorspace, cowplot, emojifont, ggimage, knitr, prettydoc,
rmarkdown, testthat
testthat, BiocStyle, knitr, rmarkdown, scRNAseq, scater,
Rtsne, irlba, RColorBrewer, viridis, org.Mm.eg.db, htmltools
knitr, org.Mm.eg.db, cluster, clusterProfiler, pheatmap,
BiocStyle, testthat
BiocStyle, knitr, testthat, magrittr,
BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene,
pasillaBamSubset
Biobase, BiocGenerics, BiocStyle, knitr, leukemiasEset,
rmarkdown, RUnit
testthat, xcms, BiocStyle, knitr, rmarkdown, msPurityData,
CAMERA
knitr, testthat, Rtsne, biomaRt, igraph, STRINGdb, NMI,
pheatmap, ggplot2, BiocStyle, rmarkdown, BiocParallel
testthat, rmarkdown, pRolocdata (>= 1.9.4), roxygen2,
synapter, xtable, rgl, BiocStyle (>= 2.5.19), hpar (>= 1.15.3),
dplyr, GO.db, AnnotationDbi, Rtsne (>= 0.13), nipals
testthat, BiocStyle, knitr, rmarkdown, data.table, svglite
knitr, BiocStyle, rmarkdown, testthat, ggplot2, HelloRanges,
HelloRangesData, BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset,
covr
testthat, knitr, parallel, devtools, rmarkdown, gplots, covr,
car, rstudioapi
bit64, BiocStyle, knitr, rmarkdown, testthat
BiocStyle, biomaRt, beachmat, cowplot, cluster, destiny,
knitr, monocle, mvoutlier, rmarkdown, Rtsne, testthat,
magrittr, pheatmap, DropletUtils, irlba
BSgenome.Mmusculus.UCSC.mm10, BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Hsapiens.UCSC.hg38.knownGene, org.Hs.eg.db, Biobase,
BiocGenerics
testthat, BiocStyle, knitr, beachmat, HDF5Array, limSolve,
org.Mm.eg.db, DESeq2, monocle, pracma, Biobase, irlba,
aroma.light
BiocFileCache, BiocStyle, ChIPpeakAnno, covr, cowplot, knitr,
rmarkdown, testthat
testthat, Rsubread, BiocStyle, knitr, bladderbatch,
rmarkdown, org.Mm.eg.db, org.Hs.eg.db, scRNAseq, xtable
BiocStyle, covr, cowplot, knitr, limSolve, lme4, progress,
pscl, testthat, rmarkdown, S4Vectors, scDD, scran, mfa,
phenopath, BASiCS, zinbwave, SparseDC
BiocStyle, knitr, rmarkdown, testthat, graphics, ggplot2,
scales
biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit,
org.Hs.eg.db, BiocStyle, knitr, VariantAnnotation
ggplot2, ggtree, knitr, prettydoc, testthat, tidyr
RUnit, plyr, knitr, BiocGenerics, rmarkdown, RMySQL
knitr, rmarkdown, testthat, tximportData,
TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), limma,
edgeR, DESeq2 (>= 1.11.6), rhdf5, jsonlite
BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata, ncdf4,
rgl, microbenchmark, testthat, pander, magrittr
RUnit, BiocGenerics, Biobase, RJSONIO, rmarkdown, devtools
(>= 1.4.1)
testthat, BiocStyle, knitr, rmarkdown, FNN, RcppAnnoy
knitr, dbplyr, DBI, org.Hs.eg.db, MultiAssayExperiment,
BiocStyle, ontoProc, ontologyPlot, pogos, GenomeInfoDb,
restfulSE (>= 1.3.7), BiocFileCache,
TxDb.Hsapiens.UCSC.hg19.knownGene, Biobase,
TxDb.Hsapiens.UCSC.hg18.knownGene, reshape2, testthat,
AnnotationDbi, FDb.InfiniumMethylation.hg19, EnsDb.Hsapiens.v75
BiocStyle, knitr, rmarkdown, testthat, tm, SnowballC,
pdftools, visNetwork, biocViews
BiocStyle, knitr, rmarkdown, testthat, diffcyt, umap
testthat, knitr, BiocStyle, rmarkdown, BiocCheck, MASS,
VanillaICE, tidyverse
BiocStyle, AnnotationDbi, limma, pheatmap, knitr, rmarkdown,
statmod, testthat
Matrix, HDF5Array, genefilter, SummarizedExperiment, airway,
pryr, DelayedMatrixStats, knitr, BiocStyle, RUnit
knitr, rmarkdown, EpiDISH, FlowSorted.Blood.450k(>= 1.0.1),
FlowSorted.CordBlood.450k, FlowSorted.CordBloodNorway.450k,
testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0),
IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1),
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
CompQuadForm, poibin, survey, testthat, knitr, rmarkdown,
GWASdata, ggplot2, GGally, RColorBrewer,
TxDb.Hsapiens.UCSC.hg19.knownGene
h5vcData, SummarizedExperiment (>= 1.9.6), GenomicRanges,
ExperimentHub, BiocParallel, BiocStyle
knitr, rmarkdown, testthat, lme4(>= 1.0), roxygen2(> 4.0.0),
numDeriv, car, gdata, lattice, GGally, GSEABase, NMF,
TxDb.Hsapiens.UCSC.hg19.knownGene, rsvd, limma, RColorBrewer,
BiocStyle, scater
knitr, testthat, rmarkdown, roxygen2, hexbin
testthat, knitr, rmarkdown, BiocStyle,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, RMySQL,
AnnotationDbi, beeswarm, covr
PSCBS, BiocStyle, BiocParallel, knitr, optparse,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, covr, testthat
AnnotationDbi, rpx, DT, knitr, rmarkdown, BiocStyle, mzR,
xcms, msdata, isobar, MALDIquant (>= 1.12), MALDIquantForeign,
readBrukerFlexData, rTANDEM, synapter, synapterdata, IPPD,
Rdisop, OrgMassSpecR, SummarizedExperiment, BRAIN, rols, hpar,
GO.db, org.Hs.eg.db, e1071, biomaRt, RColorBrewer, ggplot2,
reshape2, xtable, lattice, mzID, pRoloc, pRolocdata, MSGFplus,
MSGFgui, MSnID, msmsTests, msmsEDA, DEP, corrplot, beanplot,
Heatplus, gplots, VennDiagram, protViz, genefilter, plotly,
gridExtra, dplyr, lubridate
BiocStyle, curatedTCGAData, devtools, impute, knitr,
magrittr, mirbase.db, org.Hs.eg.db, readr, RTCGAToolbox (>=
2.7.5), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene,
knitr, data.table, GSEABase, testthat, AnnotationDbi,
AnnotationFilter, Biobase, GenomicFeatures, GenomicRanges,
Gviz, IRanges, Rsamtools, S4Vectors, org.Hs.eg.db,
EnsDb.Hsapiens.v75, BiocParallel, BiocStyle, GO.db,
GenomicFiles, GenomeInfoDb, SummarizedExperiment, UpSetR,
ggplot2, png, gwascat
testthat, bsseqData, BiocStyle, rmarkdown, knitr, Matrix,
doParallel, rtracklayer, BSgenome.Hsapiens.UCSC.hg38, beachmat
limma, parallel, knitr, rmarkdown, ExperimentHub
testthat, knitr, rmarkdown, BiocStyle, Matrix, Seurat,
monocle, HSMMSingleCell
BiocManager, devtools, roxygen2, testthat, covr, knitr,
rmarkdown, BiocCheck, BiocStyle, BiocParallel, readr, RISmed,
ggplot2, metagenomeSeq, phyloseq, ape
biovizBase (>= 1.27.2), bumphunter (>= 1.7.6), derfinderData
(>= 0.99.0), sessioninfo, knitcitations (>= 1.0.1), knitr (>=
1.6), BiocStyle (>= 2.5.19), org.Hs.eg.db, rmarkdown (>=
0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle (>= 2.5.19), biovizBase, sessioninfo, derfinderData
(>= 0.99.0), derfinderPlot, DESeq2, ggplot2, knitcitations (>=
1.0.1), knitr (>= 1.6), limma, RefManageR, rmarkdown (>=
0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle, knitr, Gviz, rtracklayer, ggplot2,
BSgenome.Hsapiens.UCSC.hg38, testthat, stringr
AnnotationDbi, BiocManager, BiocStyle (>= 2.5.19), DESeq2,
sessioninfo, EnsDb.Hsapiens.v79, GenomicFeatures,
knitcitations, knitr (>= 1.6), org.Hs.eg.db, RefManageR,
regionReport (>= 1.9.4), rmarkdown (>= 0.9.5), testthat
BiocGenerics, BiocStyle, knitr, multtest, rmarkdown, RUnit
BiocStyle, biomaRt, beachmat, cowplot, cluster, destiny,
knitr, monocle, mvoutlier, rmarkdown, Rtsne, umap, testthat,
magrittr, pheatmap, irlba, tximport, tximportData, tximeta,
Biobase, limma
testthat, BiocStyle, knitr, beachmat, HDF5Array, irlba,
org.Mm.eg.db, DESeq2, monocle, pracma, Biobase, aroma.light
scales, knitr, rmarkdown, testthat, minfi,
SummarizedExperiment, FlowSorted.CordBloodNorway.450k
testthat, Rsubread, BiocStyle, knitr, bladderbatch,
rmarkdown, org.Mm.eg.db, org.Hs.eg.db, scRNAseq, xtable,
spelling
BiocGenerics, destiny, gam, knitr, mclust, RColorBrewer,
rmarkdown, splatter, testthat, covr
BiocStyle, covr, cowplot, knitr, limSolve, lme4, progress,
pscl, testthat, rmarkdown, S4Vectors, scDD, scran, mfa,
phenopath, BASiCS, zinbwave, SparseDC, BiocManager
RUnit, plyr, knitr, BiocGenerics, rmarkdown
knitr, rmarkdown, testthat, tximportData, org.Dm.eg.db,
DESeq2, devtools
knitr, rmarkdown, testthat, tximportData,
TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), limma,
edgeR, DESeq2 (>= 1.11.6), rhdf5, jsonlite, matrixStats
knitr, BiocStyle, TFBSTools, MotIV, PWMEnrich, motifStack,
seqLogo, rmarkdown, MotifDb, testthat, rGADEM, motifRG,
motifbreakR, RcisTarget, motifcounter, Logolas, BiocParallel,
BCRANK
BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata, ncdf4,
rgl, microbenchmark, testthat, pander, magrittr, MALDIquant
BiocStyle, knitr, rmarkdown, testthat, tm, SnowballC,
pdftools, visNetwork, clipr
AnnotationHub, BSgenome.Btaurus.UCSC.bosTau6.masked,
BiocStyle, MultiAssayExperiment, TCGAutils, curatedTCGAData,
ensembldb, knitr, regioneR, rmarkdown
flowWorkspace (>= 3.9.66), flowCore, ncdfFlow, shiny,
testthat, devtools, flowWorkspaceData, ggplot2
limma, genefilter, edgeR, car, Rmixmod, ggplot2, gridExtra,
cowplot, BiocStyle, pamr, PoiClaClu, parathyroidSE, knitr,
htmltools, gtable, scales, e1071, rmarkdown, IRanges,
randomForest, robustbase, glmnet, class
BiocStyle, knitr, panelcn.mops,
BSgenome.Hsapiens.UCSC.hg19.masked, DNAcopy
CompQuadForm, poibin, survey, testthat, BiocStyle, knitr,
rmarkdown, GWASdata, ggplot2, GGally, RColorBrewer,
TxDb.Hsapiens.UCSC.hg19.knownGene
BSgenome.Hsapiens.UCSC.hg19, BiocStyle, knitr, kableExtra,
rmarkdown, testthat
knitr, rmarkdown, BiocStyle, scran (>= 1.11.4), scater,
igraph, iSEE, testthat
h5vcData, SummarizedExperiment (>= 1.9.6), GenomicRanges,
ExperimentHub, TENxBrainData, BiocParallel, GenomicFeatures,
BiocStyle
knitr, BiocStyle, beeswarm, tximportData, DT, tximport,
dplyr, magrittr, BiocFileCache, testthat, BiocManager
RUnit, BiocGenerics, knitr, Biobase, GEOquery, biomaRt,
ggplotify
PSCBS, copynumber, BiocStyle, BiocParallel, knitr, optparse,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, covr, testthat
testthat, BiocStyle, knitr, rmarkdown, scRNAseq, magrittr,
Rtsne, Matrix
BiocCheck, BiocManager, BiocStyle, knitr, rmarkdown,
microbenchmark, testthat
jpeg, png, BiocStyle, rmarkdown, devtools, maftools,
parmigene, c3net, minet, dnet, Biobase, affy, testthat, sesame,
pathview, clusterProfiler, igraph, supraHex
BiocFileCache, BiocStyle, curatedTCGAData, devtools, dplyr,
IlluminaHumanMethylation450kanno.ilmn12.hg19, impute, knitr,
magrittr, minfi, mirbase.db, org.Hs.eg.db, readr, RTCGAToolbox
(>= 2.7.5), rtracklayer, R.utils, testthat,
TxDb.Hsapiens.UCSC.hg19.knownGene,
knitr, GenomicFiles, EnsDb.Hsapiens.v75, testthat, shiny,
biovizBase (>= 1.27.2), Gviz, AnnotationFilter, ensembldb,
ontoProc
testthat, BiocStyle, knitr, beachmat, scRNAseq
BioMark, BiocGenerics, BiocStyle, golubEsets, hu6800.db,
knitr, rmarkdown, testthat
genefilter, mvtnorm, testthat (>= 0.3), data.tree,
dendextend, samr, pamr, kohonen, NMF, WGCNA, Rtsne, umap,
clusterProfiler, AnnotationDbi, gplots
BiocStyle (>= 2.9.6), BSgenome (>= 1.49.5),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl, knitr,
rmarkdown, RUnit (>= 0.4.32)
clusterProfiler, dplyr, knitr, org.Hs.eg.db, prettydoc
testthat, flowWorkspaceData, knitr, ggcyto, parallel, CytoML
RTN, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown,
Fletcher2013b, geneplast.data.string.v91, ggplot2, ggpubr
emojifont, ggimage, ggplotify, grDevices, knitr, prettydoc,
rmarkdown, scales, testthat, tibble
DO.db, DT, utils, knitr, RBGL, RUnit, snpStats, Gviz,
VariantAnnotation, AnnotationHub, gQTLstats, graph, ggbio,
ggplot2, DelayedArray
BiocStyle, knitr, testthat, magrittr,
BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, org.Hs.eg.db, org.Mm.eg.db,
pasillaBamSubset
knitr, rmarkdown, BiocStyle, ggrepel, plotly, covr, spelling
knitr, rmarkdown, BSgenome, Biostrings, mclust, rjson
knitr, rmarkdown, devtools, roxygen2, testthat
BiocGenerics, BiocStyle, knitr, multtest, rmarkdown, testthat
BiocStyle, covr, knitr, Matrix, rmarkdown, scales, scater,
testthat
BiocStyle, biomaRt, beachmat, cowplot, destiny, knitr,
mvoutlier, rmarkdown, Rtsne, uwot, testthat, magrittr,
pheatmap, Biobase, limma
testthat, Rsubread, BiocStyle, knitr, bladderbatch,
rmarkdown, org.Mm.eg.db, org.Hs.eg.db, scRNAseq, xtable,
spelling, GSEABase, lintr
BiocGenerics, BiocStyle, destiny, gam, knitr, mclust,
RColorBrewer, rmarkdown, testthat, covr
BiocStyle, covr, cowplot, knitr, limSolve, lme4, progress,
pscl, testthat, rmarkdown, S4Vectors, scDD, scran, mfa,
phenopath, BASiCS, zinbwave, SparseDC, BiocManager, spelling
Biostrings, ggplot2, ggtree, knitr, phangorn, prettydoc,
testthat, tidyr
knitr, rmarkdown, testthat, tximportData, org.Dm.eg.db,
DESeq2, edgeR, devtools
knitr, rmarkdown, testthat, tximportData,
TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), limma,
edgeR, DESeq2 (>= 1.11.6), rhdf5, jsonlite, matrixStats, Matrix
spelling, knitr, BiocStyle, TFBSTools, rmarkdown, MotifDb,
testthat, Logolas, BiocParallel, seqLogo, motifStack
BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata, ncdf4,
rgl, microbenchmark, testthat, pander, magrittr, MALDIquant,
pheatmap
Rcpp, RcppArmadillo (>= 0.7.500.0.0), BH
Rcpp, RcppArmadillo, RcppProgress, stochvol, GIGrvg
Rcpp, RcppArmadillo, RcppProgress, RcppParallel, stochvol,
GIGrvg
Rcpp, RcppEigen, RcppParallel, beachmat, Rhdf5lib, RSpectra,
BH
Rcpp, RcppArmadillo, RcppProgress, RcppDist, RcppNumerical,
RcppEigen
Rcpp, BH (>= 1.51.0), RcppEigen (>= 0.3.2), RcppParallel
Rcpp, RcppEigen, RcppParallel, StanHeaders (>= 2.10.0.2), BH
(>= 1.69.0-1), rpf (>= 0.45)
Rcpp, RcppEigen, StanHeaders (>= 2.7), BH, rpf (>= 0.45)
Rcpp, RcppEigen, StanHeaders (>= 2.19.1), BH
Rcpp, RcppParallel, RcppEigen, gaston, BH
dparser (>= 0.1.8), PreciseSums (>= 0.3), RcppEigen (>=
0.3.3.3.0), RcppArmadillo (>= 0.9.300.2.0), sitmo, StanHeaders
(>= 2.18.0), BH, checkmate, qs
dparser (>= 0.1.8), PreciseSums (>= 0.3), RcppEigen (>=
0.3.3.3.0), RcppArmadillo (>= 0.9.300.2.0), sitmo, StanHeaders
(>= 2.21.0), BH, checkmate
Rcpp (>= 0.11.0), RcppEigen, RcppProgress
Rcpp, RcppArmadillo (>= 0.9.1), ClusterR, OpenImageR
Rcpp, RcppArmadillo, RcppEigen, testthat, psqn (>= 0.3.0)
Rcpp, rxode2, RcppArmadillo, RcppEigen, rxode2parse
Rcpp, RcppArmadillo (>= 0.8.600), bigmemory, BH
bigsparser, bigstatsr, Rcpp, RcppArmadillo (>= 0.9.600),
rmio
bigsparser, bigstatsr, Rcpp, RcppArmadillo (>= 0.9.600),
rmio, roptim (>= 0.1.6)
bigstatsr, Rcpp, RcppArmadillo (>= 0.9.600), rmio
Rcpp (>= 0.12.4), RcppArmadillo, RcppEigen (>= 0.3.3.3.1)
StanHeaders, rstan, BH (>= 1.72), Rcpp, RcppEigen
StanHeaders, rstan, BH (>= 1.72), Rcpp, RcppEigen,
RcppParallel (>= 5.0.1)
testthat (>= 3.0.0), Rcpp, RcppArmadillo
Rcpp, RcppParallel, BH (>= 1.60.0-1), RcppArmadillo
BH(>= 1.62.0.1), Rcpp(>= 0.12.11), RcppArmadillo, RcppGSL(>=
0.3.2), RcppParallel
BH(>= 1.69.0.1), Rcpp(>= 1.0.1), RcppArmadillo, RcppGSL(>=
0.3.6), RcppParallel
Rcpp, RcppArmadillo, RcppParallel, bigstatsr (>= 1.2.3),
rmio
BH, Rcpp, RcppArmadillo, RcppEigen, RcppParallel,
StanHeaders, rstan
BH (>= 1.54), RcppProgress (>= 0.1), Rcpp
RcppArmadillo (>= 0.4.500), BH (>= 1.54), RcppProgress (>=
0.2), Rcpp
RcppArmadillo (>= 0.4.650), BH (>= 1.55), RcppProgress (>=
0.2.1), Rcpp
RcppArmadillo (>= 0.7.100), BH (>= 1.55), RcppProgress (>=
0.2.1), Rcpp
RcppArmadillo (>= 0.3.910), BH (>= 1.54), RcppProgress (>=
0.1), Rcpp
RcppArmadillo (>= 0.3.910), BH (>= 1.54), RcppProgress (>=
0.2), Rcpp
Rcpp (>= 1.0.0), RcppArmadillo (>= 0.9.200), simcdm, rgen
Rcpp, RcppArmadillo (>= 0.9.900), stochvol
Rcpp, RcppArmadillo (>= 0.7.500.0.0), stochvol
Rcpp, RcppEigen, RcppNumerical, RcppZiggurat, BH
Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, gRbase (>=
1.7-2)
Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, gRbase (>=
1.8-0)
Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, gRbase
Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen
Rcpp (>= 0.11.1), RcppEigen, RcppArmadillo
Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, gRbase (>=
1.8-6)
Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, gRbase (>=
1.8.6)
Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, gRbase (>=
1.8-6.6)
jsonify (>= 0.1.1), rapidjsonr (>= 1.1), Rcpp
Rcpp, rapidjsonr (>= 1.1), jsonify (>= 0.1.1)
BH, jsonify (>= 0.2.0), rapidjsonr (>= 1.1), Rcpp
jsonify (>= 1.1.1), rapidjsonr (>= 1.2.0), Rcpp, sfheaders
(>= 0.1.0)
jsonify (>= 1.1.1), rapidjsonr (>= 1.2.0), Rcpp, sfheaders
(>= 0.2.2)
geometries, jsonify (>= 1.1.1), rapidjsonr (>= 1.2.0), Rcpp,
sfheaders (>= 0.2.2)
Rcpp, RcppEigen, RcppThread, BH, bigmemory
Rcpp (>= 0.12.0), RcppArmadillo, RcppParallel (>= 5.0.1)
Rcpp (>= 0.12.0), RcppParallel (>= 5.0.1), RcppEigen
Rcpp, RcppEigen, RViennaCL (>= 1.7.1-1), BH
Rcpp, RcppEigen, RViennaCL (>= 1.7.1.4), BH
Rcpp, RcppEigen, RViennaCL (>= 1.7.1.7), BH
Rcpp, RcppArmadillo, reshape2, scales, ggplot2, Formula,
testthat
Rcpp, RcppArmadillo (>= 0.9.600.0.0), RcppProgress, BH,
bigmemory, Matrix
BH, Rcpp, RcppEigen, RcppParallel, rstan, StanHeaders
cpp11, BH (>= 1.75.0), later, systemfonts
Rcpp, RcppArmadillo, RcppProgress, Rhtslib, zlibbioc
Rcpp, RcppArmadillo (>= 0.9.900.1.0), roptim
Rcpp,RcppProgress (>= 0.2.1),RcppArmadillo (>=
0.7.200.2.0),testthat(>= 1.0.2)
sglOptim, Rcpp, RcppProgress, RcppArmadillo, BH
BH, colourvalues, geojsonsf, jsonify, rapidjsonr, Rcpp,
spatialwidget (>= 0.2.0)
BH, colourvalues, geojsonsf (>= 1.3.3), jsonify (>= 1.1.1),
rapidjsonr, Rcpp, sfheaders (>= 0.2.1), spatialwidget (>=
0.2.2)
BH, colourvalues, geojsonsf (>= 1.3.3), jsonify (>= 1.1.1),
rapidjsonr, Rcpp, sfheaders (>= 0.2.2), spatialwidget (>=
0.2.2)
BH, colourvalues, geojsonsf (>= 1.3.3), geometries, jsonify
(>= 1.1.1), rapidjsonr, Rcpp, sfheaders (>= 0.2.2),
spatialwidget (>= 0.2.3)
Rcpp, RcppParallel, RcppArmadillo (>= 0.9.600.4.0)
Rcpp, RcppArmadillo, RcppProgress (>= 0.2)
Rcpp, RcppArmadillo, RcppProgress, stochvol (>= 2.0.3),
RcppParallel
Rcpp (>= 0.11.1), RcppEigen, RcppParallel
Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, RcppParallel,
progress
Rcpp, RcppArmadillo (>= 0.9.800), RcppEnsmallen (>=
0.2.10.0)
Rcpp, RcppProgress, RcppArmadillo, BH, sglOptim
Rcpp, RcppArmadillo, testthat, nloptr (>= 1.2.0)
Rcpp, RcppArmadillo, RcppThread (>= 2.1.3)
BH, dparser (>= 0.1.8), lbfgsb3c, Rcpp, RcppArmadillo (>=
0.11.2.3.1), RcppEigen (>= 0.3.3.3.0), rxode2 (>= 2.0.7),
StanHeaders (>= 2.18.0), rxode2parse, rxode2random
Rcpp, RcppEigen, BH, bigmemory, RcppArmadillo
BH, kde1d, Rcpp, RcppEigen, RcppThread, rvinecopulib, wdm
Rcpp, RcppArmadillo, RcppProgress, splines2 (>= 0.3.0)
Rcpp, RcppArmadillo, RcppProgress, splines2 (>= 0.4.4)
Rcpp, RcppArmadillo (>= 0.10.7.5.0), RcppProgress, splines2
(>= 0.4.4)
Rcpp, RcppParallel, RcppArmadillo (>= 0.7.600.1.0)
Rcpp (>= 0.11.3), RcppArmadillo, pbv, roptim
Rcpp (>= 0.11.0), RcppArmadillo, RcppProgress (>= 0.4.2)
Rcpp, RcppParallel, RcppArmadillo (>= 0.7.600.1.0), quanteda
Rcpp, RcppArmadillo, rmumps (>= 5.2.1-6)
Rcpp, RcppArmadillo, RcppEigen, RcppProgress, BH, bigmemory
Rcpp, RcppEigen, RcppProgress, BH, bigmemory
Rcpp, RcppArmadillo (>= 0.9.870), RcppProgress (>= 0.4.2)
Rcpp, RcppThread, progress, spacefillr (>= 0.3.0)
Rcpp, RcppArmadillo, RcppThread, cli, redistmetrics
Rcpp, RcppEigen, robustbase, cubature (> 1.3-8)
Rcpp, RcppArmadillo (>= 0.9.200), rgen, simcdm
Rcpp, RcppEigen, BH (>= 1.58), StanHeaders (>= 2.7.0)
Rcpp, RcppEigen, BH (>= 1.58), StanHeaders (>= 2.8.0)
Rcpp, RcppEigen, BH (>= 1.58), StanHeaders (>= 2.9.0)
BH, Rcpp, RcppEigen, RcppThread, wdm, kde1d
BH, Rcpp, RcppEigen, RcppThread (>= 2.1.2), wdm, kde1d
rxode2parse, rxode2random, rxode2et, PreciseSums (>= 0.3),
Rcpp, RcppArmadillo (>= 0.9.300.2.0), BH
rxode2parse (>= 2.0.12), rxode2random, rxode2et, PreciseSums
(>= 0.3), Rcpp, RcppArmadillo (>= 0.9.300.2.0), BH
sitmo, rxode2parse, Rcpp, RcppArmadillo, BH
Rcpp, RcppParallel, RcppEigen, RcppNumerical, BH
BH, Rcpp, RcppEigen, RcppNumerical, RcppParallel
Rcpp, RcppArmadillo, RcppProgress, stochvol, shrinkTVP
Rcpp, RcppArmadillo, GIGrvg, RcppProgress, stochvol
Rcpp, RcppArmadillo, RcppProgress, BH, bigmemory
BH, colourvalues (>= 0.2.0), geojsonsf (>= 1.2.1), jsonify
(>= 0.1.2), rapidjsonr, Rcpp
BH, colourvalues (>= 0.3.4), geojsonsf (>= 1.3.3), jsonify
(>= 1.1.1), rapidjsonr, Rcpp, sfheaders (>= 0.2.1)
BH, colourvalues (>= 0.3.4), geojsonsf (>= 1.3.3),
geometries, jsonify (>= 1.1.1), rapidjsonr, Rcpp, sfheaders (>=
0.2.1)
BH, colourvalues (>= 0.2.2), geojsonsf (>= 1.3.0), jsonify
(>= 0.2.0), rapidjsonr, Rcpp
RcppEigen, Rcpp, RcppThread, BH, wdm, rvinecopulib
Rcpp (>= 0.12.14), BH (>= 1.58.0-1), RcppEigen,
RcppNumerical
Rcpp, RcppParallel, digest, sparsepp (>= 0.2.0)
StanHeaders, rstan, BH, Rcpp, RcppEigen, TMB
StanHeaders, rstan, BH, Rcpp, RcppEigen, TMB, RcppParallel
Rcpp, RcppProgress, RcppParallel, RcppAnnoy, dqrng
rvinecopulib, RcppEigen, Rcpp, BH, wdm, RcppThread, kde1d
Biostrings, RSQLite, S4Vectors, IRanges, XVector
S4Vectors, IRanges, XVector, Biostrings, Rsamtools
IRanges, XVector, Biostrings, Rcpp, S4Vectors
Rcpp, RcppArmadillo, RcppProgress, BH, RcppParallel
Rcpp, BH(>= 1.62.0-1), RProtoBufLib(>= 1.3.7), cytolib(>=
1.3.3), RcppParallel
Rhtslib (>= 1.17.7), S4Vectors, IRanges, XVector, Biostrings
S4Vectors, IRanges, XVector, Biostrings, Rhtslib
Rcpp, BH(>= 1.62.0-1), RProtoBufLib(>= 1.7.1), cytolib(>=
1.7.4), RcppParallel
Rcpp, RcppArmadillo (>= 0.7.2), Rhdf5lib, beachmat, ClusterR
Rcpp, Rhtslib (>= 1.13.1), zlibbioc, testthat
Rcpp, BH(>= 1.62.0-1), RProtoBufLib, cytolib ( >=
2.0.3),Rhdf5lib, RcppArmadillo, RcppParallel(>= 4.4.2-1),
flowWorkspace
Rcpp, BH(>= 1.72.0-2), RProtoBufLib(>= 1.99.8),Rhdf5lib,
RcppArmadillo, RcppParallel(>= 4.4.2-1)
Rcpp, RcppArmadillo, BH(>= 1.65.0.1), cytolib(>= 1.7.2),
RProtoBufLib
Rcpp, BH(>= 1.62.0-1), RProtoBufLib(>= 1.99.4), cytolib (>=
2.0.1),Rhdf5lib, RcppArmadillo, RcppParallel(>= 4.4.2-1)
Rcpp, RcppArmadillo, beachmat (>= 2.0.0)
Rcpp, BH(>= 1.62.0-1), RProtoBufLib, cytolib ( >=
1.99.26),Rhdf5lib, RcppArmadillo, RcppParallel(>= 4.4.2-1),
flowWorkspace
Rcpp, beachmat, Rhdf5lib, BH, dqrng, scuttle
Rcpp, RcppArmadillo, RcppParallel (>= 5.0.0)
S4Vectors, IRanges, XVector, Biostrings, Rhtslib, zlibbioc
Rcpp, BH(>= 1.62.0-1), RProtoBufLib(>= 1.99.4), cytolib (>=
2.1.15),Rhdf5lib, RcppArmadillo, RcppParallel(>= 4.4.2-1)
Rcpp, BH(>= 1.62.0-1), RProtoBufLib, cytolib, Rhdf5lib,
RcppArmadillo, RcppParallel(>= 4.4.2-1), flowWorkspace
Rcpp, BH(>= 1.75.0.0), RProtoBufLib(>= 2.3.5),Rhdf5lib,
RcppArmadillo, RcppParallel(>= 4.4.2-1)
Rcpp, RcppArmadillo, BH(>= 1.65.0.1), cytolib, RProtoBufLib
Rcpp, BH(>= 1.62.0-1), RProtoBufLib(>= 1.99.4), cytolib (>=
2.3.7),Rhdf5lib, RcppArmadillo, RcppParallel(>= 4.4.2-1)
cpp11, BH(>= 1.62.0-1), RProtoBufLib, cytolib, Rhdf5lib,
flowWorkspace
Rhtslib (>= 1.99.3), S4Vectors, IRanges, XVector, Biostrings
S4Vectors, IRanges, XVector, Biostrings, Rhtslib (>= 1.99.3)
cpp11, BH(>= 1.65.0.1), cytolib, RProtoBufLib
S4Vectors (>= 0.13.8), IRanges, XVector, Biostrings
Rcpp, BH(>= 1.62.0-1), RProtoBufLib, cytolib(>= 0.99.6)
Rcpp, BH(>= 1.62.0-1), RProtoBufLib, cytolib(>= 1.1.3)
Rhtslib (>= 1.16.3), S4Vectors, IRanges, XVector, Biostrings
car, Hmisc, intsvy, lme4, LSAmitR, svyPVpack
Rcplex, gurobi, rcbc, cccp, Rmosek, Rglpk
MatrixModels, graph, SparseM (>= 0.87), sfsmisc
MatrixModels, graph, SparseM, sfsmisc, igraph, maptools, sp,
spdep
pbdMPI (>= 0.3-4), AnalyzeFMRI, oro.nifti
miraculix (>= 0.9.10), RandomFieldsUtils (>= 0.5.9),
MoBPSmaps
aod, coxme, glmmML, MCMCglmm, pscl, spdep, unmarked, ordinal,
gee, splm, logistf, caper, betareg, aods3, cplm
aod, aods3, betareg, caper, coxme, cplm, gee, glmmML,
logistf, MCMCglmm, ordinal, pscl, spdep, splm, unmarked
aod, aods3, betareg, caper, coxme, cplm, gee, glmmML,
logistf, MCMCglmm, ordinal, pscl, spdep, splm, unmarked, geeM
(>= 0.7.5)
aod, aods3, betareg, caper, coxme, cplm, gee, glmmML,
logistf, MCMCglmm, ordinal, pscl, spdep, splm, unmarked(>=
0.12.2), geeM (>= 0.7.5)
aod, aods3, betareg, caper, coxme, cplm, gee, glmmML,
logistf, MCMCglmm, ordinal, pscl, spdep, splm, unmarked (>=
0.12.2), geeM (>= 0.7.5)
aod, aods3, betareg, caper, coxme, cplm, gee, glmmML,
logistf, MCMCglmm, ordinal, pscl, spdep, spatialreg, splm,
unmarked (>= 0.12.2), geeM (>= 0.7.5), gamlss
aod, aods3, betareg, caper, coxme, cplm, gee, glmmML,
logistf, MCMCglmm, ordinal, pscl, spdep, spatialreg, splm,
unmarked (>= 0.12.2), geeM (>= 0.7.5)
aod, coxme, glmmML, MCMCglmm, pscl, spdep, unmarked
aod, coxme, glmmML, MCMCglmm, pscl, spdep, unmarked, ordinal,
gee
aod, coxme, glmmML, MCMCglmm, pscl, spdep, unmarked, ordinal,
gee, splm, logistf
aod, coxme, glmmML, MCMCglmm, pscl, spdep, unmarked, ordinal,
gee, splm, logistf, caper
DBI, RPostgreSQL, shiny, testthat, tools
DBI, RPostgreSQL, shiny, testthat, tools, rpart
TSMySQL, TSSQLite, TSPostgreSQL, TSodbc, TSfame, TSpadi,
TShistQuote, TSgetSymbol
TSMySQL, TSSQLite, TSPostgreSQL, TSodbc, TSfame, TShistQuote,
TSgetSymbol
RWeka, cba, cclust, flexmix, flexclust, kernlab, mclust
RWeka, cba, cclust, flexmix, flexclust, kernlab, mclust,
relations
RWeka, cba, cclust, flexmix, flexclust, kernlab, mclust,
relations, modeltools
RWeka, ape, cba, cclust, flexmix, flexclust, kernlab, mclust,
relations, modeltools
RWeka, ape, cba, cclust, flexmix, flexclust, kernlab, mclust,
modeltools
RWeka, ape, cba, cclust, flexclust, flexmix, kernlab, mclust,
movMF, modeltools
ggdendro, dendroextras, Hmisc, data.table, rpart
ggdendro, dendroextras, Hmisc, data.table, rpart, WGCNA,
moduleColor, distory, phangorn, zoo
ggdendro, labeltodendro,dendroextras, Hmisc, data.table,
rpart
afex, BayesFactor, brms, car, emmeans, lavaan, lm.beta, MASS,
mediation, MuMIn, pscl, tidymodels
CARBayes, coxme, gee, geepack, glmmADMB, MCMCglmm, MCMCpack,
nnet, pscl, rstanarm, survival
CARBayes, coxme, gee, geepack, MCMCglmm, MCMCpack, nnet,
pscl, rstanarm, survival
CARBayes, coxme, gee, geepack, MCMCglmm, MCMCpack, mice,
nnet, pscl, rstanarm, sommer, survival
INLA, diseasemapping, geoR, mvtnorm, Ryacas
INLA, diseasemapping, geoR, rgeos, mvtnorm, Ryacas
INLA, diseasemapping, geoR, rgeos, mvtnorm
R2WinBUGS, R2OpenBUGS, BRugs, R2jags, sp, nlme
nlme, diseasemapping, geoRglm, R2WinBUGS, R2OpenBUGS, BRugs,
R2jags, rjags
nlme, diseasemapping, geoRglm, R2WinBUGS, R2OpenBUGS, R2jags,
rjags
mice, earth, spls, MRCE, remMap, MultivariateRandomForest,
SiER, mcen, GPM, RMTL, MTPS
survival, MASS, coxme, gee, geepack, glmmADMB, afex
afex, coxme, gee, geepack, glmmADMB, lme4, MASS, nlme,
survival
afex, coxme, gee, geepack, glmmADMB, lme4, MASS, MCMCglmm,
nlme, survival
chron, timeDate, zoo, xts, its, tis, timeSeries, fts, tseries
chron, fts, timeSeries, timeDate, tis, tseries, xts, zoo
AER, car, eha, lme4, ordinal, simex, tibble, haven
Amelia, imputeR, jomo, micemd, mitml, pan, simputation
maps, RColorBrewer, pbdNCDF4 (>= 0.1-0), pmclust, MixSim,
EMCluster, sqldf, phyclust
maps, RColorBrewer, pbdNCDF4 (>= 0.1-1), pmclust, MixSim,
EMCluster, sqldf, phyclust, MASS
maps, RColorBrewer, pbdNCDF4 (>= 0.1-2), pmclust, MixSim,
EMCluster, phyclust, MASS
maps, RColorBrewer, pbdNCDF4 (>= 0.1-2), pmclust, MixSim,
EMCluster, phyclust, MASS, rjags
KEGG.db, org.Hs.eg.db, org.Sc.sgd.db, org.Ag.eg.db,
org.Pt.eg.db, org.Rn.eg.db, org.Ss.eg.db, org.At.tair.db,
org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db,
org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db,
org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Xl.eg.db
AER, betareg, crch, e1071, gam, glmx, lme4, nlme, nnet,
ordinal, quantreg, sampleSelection, survey (>= 3.31-5),
survival
AER, betareg, brglm, crch, e1071, gam, gee, glmx, lme4, MASS,
mclogit, mlogit, mnlogit, MNP, nlme, nnet, ordinal, plm, pscl,
quantreg, sampleSelection, survey (>= 3.31-5), survival, VGAM
AER, aod, betareg, biglm, brglm, caret, crch, e1071, earth,
ff, ffbase, gam (>= 1.15), gee, glmnet, glmx, kernlab, lme4,
MASS, mclogit, mda, mlogit, MNP, nlme, nnet, ordinal, plm,
pscl, quantreg, rpart, sampleSelection, speedglm, survey (>=
3.31-5), survival, truncreg, VGAM
AER, aod, betareg, bigFastlm, biglm, brglm, caret, crch,
e1071, earth, ff, ffbase, gam (>= 1.15), gee, glmx, kernlab,
lme4, MASS, mclogit, mda, mlogit, mnlogit, MNP, nlme, nnet,
ordinal, plm, pscl, quantreg, rpart, sampleSelection, survey
(>= 3.31-5), survival, truncreg, VGAM
AER, aod, betareg, biglm, brglm, caret, crch, e1071, earth,
ff, ffbase, gam (>= 1.15), gee, glmnet, glmx, kernlab, lme4,
MASS, mclogit, mda, mlogit, mnlogit, MNP, nlme, nnet, ordinal,
plm, pscl, quantreg, rpart, sampleSelection, speedglm, survey
(>= 3.31-5), survival, truncreg, VGAM
AER, aod, betareg, bigFastlm, biglm, brglm, caret, crch,
e1071, earth, ff, ffbase, gam (>= 1.15), gee, glmnet, glmx,
kernlab, lme4, MASS, mclogit, mda, mlogit, mnlogit, MNP, nlme,
nnet, ordinal, plm, pscl, quantreg, rpart, sampleSelection,
speedglm, survey (>= 3.31-5), survival, truncreg, VGAM
data.table, dplyr, htmlwidgets, vegalite, plotly, geojsonio
data.table, tibble, htmlwidgets, vegalite, plotly, geojsonio
robustX, rrcov, matrixStats, quantreg, Hmisc
cluster, mgcv, rpart, nor1mix, polycor, sm
cluster, Matrix, mgcv, rpart, nor1mix, polycor, sm, lokern
mgcv, rpart, nor1mix, polycor, sm, tikzDevice
mgcv, rpart, nor1mix, polycor, sm, tikzDevice, e1071, Hmisc,
gmp, pastecs, polynom, robustbase
mgcv, rpart, nor1mix, polycor, sm, tikzDevice, e1071, Hmisc,
pastecs, polynom, robustbase
RPostgreSQL, RODBC, RMySQL, RSQLite, RJDBC
glmnet, lars, mboost (> 2.3-0), gamboostLSS (>= 1.2-0)
AER, betareg, brglm, dynlm, eha, erer, ergm, gee, glmx, gmm,
lfe, lme4, lmtest, MASS, mclogit, mgcv, mlogit, nlme, nnet,
ordinal, plm, pscl, quantreg, rms, relevent, robustbase,
sampleSelection, spdep, stats, survey, survival, Zelig
AER, betareg, brglm, censReg, dynlm, eha, erer, ergm, fGarch,
gee, glmx, gmm, lfe, lme4, lmtest, MASS, mclogit, mgcv, mlogit,
mnlogit, nlme, nnet, ordinal, plm, pscl, quantreg, rms,
relevent, robustbase, sampleSelection, spdep, survey, survival,
Zelig
AER, betareg, brglm, censReg, dynlm, eha, erer, ergm, fGarch,
gee, glmx, gmm, lfe, lme4, lmtest, MASS, mclogit, mgcv, mlogit,
nlme, nnet, ordinal, plm, pscl, quantreg, rms, relevent,
robustbase, sampleSelection, spdep, survey, survival
AER, betareg, brglm, dynlm, eha, erer, fGarch, gee, gmm,
latentnet, lmtest, MASS, mgcv, mnlogit, nnet, ordinal, plm,
pscl, quantreg, relevent, rms, robustbase, RSiena, simex, sna,
spdep, stats, survey, systemfit, tergm, xergm, Zelig
AER, betareg, brglm, censReg, dynlm, eha, erer, fGarch, gee,
gmm, latentnet, lmtest, MASS, mgcv, mlogit, mnlogit, MuMIn,
nnet, ordinal, plm, pscl, quantreg, relevent, rms, robustbase,
RSiena, sampleSelection, simex, sna, spdep, stats, survey,
systemfit, tergm, xergm, Zelig
AER, betareg, brglm, censReg, dynlm, eha, erer, fGarch,
gamlss, gee, geepack, gmm, h2o, latentnet, lmtest, lqmm, MASS,
mgcv, mlogit, mnlogit, MuMIn, nnet, ordinal, plm, pscl,
quantreg, relevent, rms, robustbase, RSiena, sampleSelection,
simex, sna, spdep, survey, systemfit, tergm, xergm, Zelig
AER, betareg, brglm, censReg, dynlm, eha, erer, fGarch,
gamlss, gee, geepack, gmm, h2o, latentnet, lmtest, lqmm, MASS,
mfx, mgcv, mlogit, mnlogit, MuMIn, nnet, ordinal, plm, pscl,
quantreg, relevent, rms, robustbase, RSiena, sampleSelection,
simex, sna, spdep, survey, systemfit, tergm, VGAM, xergm
AER, betareg, brglm, censReg, dynlm, eha, erer, fGarch,
gamlss, gee, gmm, latentnet, lmtest, lqmm, MASS, mgcv, mlogit,
mnlogit, MuMIn, nnet, ordinal, plm, pscl, quantreg, relevent,
rms, robustbase, RSiena, sampleSelection, simex, sna, spdep,
survey, systemfit, tergm, xergm, Zelig
AER, betareg, brglm, censReg, dynlm, eha, erer, fGarch,
gamlss, gee, geepack, gmm, latentnet, lmtest, lqmm, MASS, mgcv,
mlogit, mnlogit, MuMIn, nnet, ordinal, plm, pscl, quantreg,
relevent, rms, robustbase, RSiena, sampleSelection, simex, sna,
spdep, survey, systemfit, tergm, xergm, Zelig
AER, alpaca, betareg, bife, biglm, brglm, brms (>= 2.8.8),
btergm, censReg, dynlm, eha, erer, ergm, feisr (>= 1.0.1),
fGarch, forecast, gamlss, gamlss.inf, gee, geepack, glmmADMB,
glmmTMB, gmm, gnm, h2o, latentnet, lfe, lme4, lqmm, MASS,
metaSEM, mfx, mgcv, mhurdle, miceadds, mlogit, mnlogit, MuMIn,
nlme, nnet, oglmx, ordinal, panelAR, pglm, pgmm, plm, pscl,
quantreg, relevent, rms, robust, robustbase, RSiena,
sampleSelection, simex, sna, spdep, speedglm, survey, survival,
systemfit, tergm, VGAM, Zelig
AER, alpaca, bife, biglm, brms (>= 2.8.8), btergm, dynlm,
feisr (>= 1.0.1), forecast, gamlss, gamlss.inf, glmmTMB, lfe,
lme4, miceadds, mlogit, mnlogit, MuMIn, nlme, nnet, plm,
speedglm, survival, VGAM, Zelig
AER, alpaca, bife, biglm, brms (>= 2.8.8), btergm, dynlm,
feisr (>= 1.0.1), forecast, gamlss, gamlss.inf, glmmTMB, lfe,
lme4, miceadds, mlogit, mnlogit, MuMIn, nlme, nnet, ordinal,
plm, speedglm, survival, VGAM, Zelig
AER, alpaca, betareg, Bergm, bife, biglm, brglm, brms (>=
2.8.8), btergm, dynlm, eha (>= 2.9.0), erer, ergm (>= 4.1.2),
feisr (>= 1.0.1), fGarch, fixest (>= 0.8.2), forecast, gamlss,
gamlss.inf, gee, glmmTMB, gmm, gnm, h2o, latentnet, lfe, lme4,
lqmm, metaSEM (>= 1.2.5.1), mfx, mhurdle, miceadds, mlogit,
mnlogit, MuMIn, nlme, nnet, oglmx, ordinal, pglm, plm (>=
2.4.1), relevent, rms, robust, simex, spatialreg (>= 1.2.1),
spdep (>= 1.2.2), speedglm, survival, truncreg (>= 0.2.5),
VGAM, Zelig
AER, alpaca, betareg, Bergm, bife, biglm, brglm, brms (>=
2.8.8), btergm, dynlm, eha (>= 2.9.0), erer, ergm (>= 4.1.2),
feisr (>= 1.0.1), fGarch, fixest (>= 0.10.5), forecast, gamlss,
gamlss.inf, gee, glmmTMB, gmm, gnm, h2o, latentnet, lfe, lme4,
lqmm, maxLik (>= 1.4.8), metaSEM (>= 1.2.5.1), mfx, mhurdle,
miceadds, mlogit, mnlogit, MuMIn, nlme, nnet, oglmx, ordinal,
pglm, plm (>= 2.4.1), relevent, rms, robust, simex, spatialreg
(>= 1.2.1), spdep (>= 1.2.2), speedglm, survival, truncreg (>=
0.2.5), VGAM, Zelig
iplots, reshape, ggplot2, cairoDevice, OTUbase
doMC, doMPI, doSNOW, doParallel, doRedis
multicore, org.Ce.eg.db, org.Mm.eg.db, org.Rn.eg.db,
org.Hs.eg.db, org.Dm.eg.db
doSNOW, VanillaICE (>= 1.21.24), RColorBrewer
parallel, org.Ce.eg.db, org.Mm.eg.db, org.Rn.eg.db,
org.Hs.eg.db, org.Dm.eg.db
rGADEM, seqLogo, genoPlotR, parallel, VennDiagram,
RColorBrewer, vcd, MotifDb, snowfall
MatrixEQTL, Homo.sapiens, foreach, doParallel, gwascat,
ggplot2, reshape2
MatrixEQTL, Homo.sapiens, parallel, foreach, doParallel,
gwascat
MatrixEQTL, Homo.sapiens, foreach, doParallel, gwascat
Rsubread, BSgenome.Mmusculus.UCSC.mm9,
TxDb.Mmusculus.UCSC.mm9.knownGene,
BSgenome.Mmusculus.UCSC.mm10,
TxDb.Mmusculus.UCSC.mm10.knownGene, Mus.musculus,
BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Hsapiens.UCSC.hg38.knownGene
parallel, XML, rgl, gplots, pheatmap, ChIPpeakAnno,
org.Dm.eg.db, caTools, plotly
rgl, XLConnect, edgeR, csaw, BSgenome, GenomeInfoDb
rgl, XLConnect, edgeR, csaw, BSgenome, GenomeInfoDb,
profileplyr, rtracklayer, grid
BioPlex, biscuiteerData, bodymapRat, CLLmethylation,
CopyNeutralIMA, curatedAdipoArray, curatedAdipoChIP,
curatedMetagenomicData, curatedTCGAData, DMRcatedata,
DuoClustering2018, easierData, emtdata, epimutacionsData,
FieldEffectCrc, GenomicDistributionsData, GSE103322, GSE13015,
GSE62944, HDCytoData, HMP16SData, HumanAffyData, imcdatasets,
mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas,
MethylSeqData, muscData, NxtIRFdata, ObMiTi, quantiseqr,
restfulSEData, RLHub, sesameData, SimBenchData,
SingleCellMultiModal, SingleMoleculeFootprintingData,
spatialDmelxsim, STexampleData, TabulaMurisData,
TabulaMurisSenisData, TENxVisiumData, tissueTreg,
VectraPolarisData, xcoredata