importFrom(stats, gaussian, model.extract, model.matrix, quantile)

importFrom("stats", "binomial", "coef", "fitted", "formula",
"gaussian", "glm.fit", "is.empty.model", "lm.fit", "lowess",

export(ape2ouch, area.between.curves, birthdeath.tree, phy.anova, phy.manova)
export(delta.tree, lambda.tree, tworate.tree, linearchange.tree, rescale.tree)
export(rate.estimate, crown.p, stem.p, crown.limits, stem.limits)
export(fit.continuous, fit.discrete, prune.extinct.taxa, prune.random.taxa, rc)

export(deltaTree, lambdaTree, kappaTree, tworateTree, linearchangeTree, rescaleTree)

export(fitContinuous, fitDiscrete, prune.extinct.taxa, prune.random.taxa, rc)

import(ape, MASS, mvtnorm, msm, subplex, deSolve,

import(MASS, digest, deSolve, coda, mvtnorm, subplex, Rcpp, ape)

importFrom("graphics", "arrows", "layout", "legend", "lines", "mtext",
importFrom("stats", "anova", "approxfun", "as.formula", "coef",
"density", "dexp", "dist", "dnorm", "dpois", "dunif",
"ecdf", "end", "lm", "logLik", "manova", "median",
"na.omit", "optim", "optimize", "qnorm", "quantile",
"reorder", "rexp", "rnorm", "runif", "sd", "spline",

# Edited by hand to fix problems in isBounded

export( gelnet.krr, gelnet.klr, gelnet.kor )

importFrom("graphics", "axis", "legend", "lines", "mtext", "par", "plot")
importFrom("stats", "approx", "fft", "lm", "sd")

importFrom("stats", "approx", "fft", "lm", "sd", "median")

importFrom("stats", "approx", "fft", "lm", "sd", "median", "optim", "spline")

importFrom(igraph, E, V, "V<-", edge, edges, vertex, ends, path, set.edge.attribute, are.connected, get.shortest.paths, graph.empty, simplify, clusters, induced.subgraph, get.edges, degree, get.edge.attribute, shortest.paths, as.undirected, graph.edgelist, vertices)

importFrom("stats", "median", "optim", "pnorm", "qnorm", "rbinom",

importFrom("stats", "aov", "binomial", "deviance", "fitted", "runif", "glm",
"predict.glm", "cor", "lm", "predict", "resid", "rnorm", "step",
importFrom("lars", "lars", "print.lars",  "plot.lars",  "predict.lars",
#importFrom("nnet", "multinom") - predict not exported!
import("randomForest", "e1071", "C50", "MASS", "class", "nnet", "rpart")
export("dShao", "gcv", "mse", "mae", "mape", "smape", "ShaoReg",
"yhat_lm", "yhat_step", "yhat_lars",  "yhat_plus", "yhat_nn",
"yhat_gel", "yhat_RF", "yhat_SVM", "regal", "featureSelect", "yh_kNN",
"misclassificationrate", "logloss", "rmix", "kNN_LOOCV", "kNN_MLE", "yh_lda",
"yh_qda", "yh_svm", "yh_RF", "yh_CART", "yh_C50", "yh_NB", "cgcv", "yh_NN",