export(czek_matrix, manual_reorder, plot.czek_matrix, print.czek_matrix, print.czek_matrix_dist, Um_factor, cluster_dist)

importFrom("graphics", "arrows", "axis", "curve", "legend", "lines",
"mtext", "par", "points", "segments", "text")
importFrom("stats", "coef", "density", "deriv", "dnorm", "integrate",
"pnorm", "qnorm", "quantile", "rnorm", "sd", "uniroot",

importFrom("graphics", "plot", "axis", "legend",  "lines",  "title")

exportMethods('dbInsertDocument', 'dbAuthenticate', 'dbShowCollections', 'dbGetQuery', 'dbGetQueryForKeys', 'dbDisconnect')

exportMethods('dbInsertDocument', 'dbAuthenticate', 'dbShowCollections', 'dbGetQuery', 'dbGetQueryForKeys', 'dbDisconnect', 'dbRemoveQuery', 'dbGetDistinct', 'dbAggregate')

exportMethods('dbInsertDocument', 'dbAuthenticate', 'dbSetWriteConcern', 'dbShowCollections', 'dbGetQuery', 'dbGetQueryForKeys', 'dbDisconnect', 'dbRemoveQuery', 'dbGetDistinct', 'dbAggregate')

## regular functions (most of these will be made private)

importFrom("grDevices", "col2rgb", "dev.off", "heat.colors", "rgb")

importFrom("graphics", "abline", "legend", "matplot", "par", "plot","points")
importFrom("stats", "dbeta", "dlnorm", "dnorm", "integrate", "lm", "optim", "pbeta", "pnorm", "uniroot")

export("NLStart", "NLLoadModel", "NLSourceFromString", "NLCommand", "NLDoCommand",
"NLGetPatches", "NLSetPatches", "NLSetPatchSet", "NLSetAgentSet", "NLGetAgentSet", "NLGetGraph", "NLDfToList", "NLQuit")

"NLGetPatches", "NLSetPatches", "NLGetAgentSet", "NLGetGraph", "NLDfToList", "NLQuit")

"NLGetPatches", "NLSetPatches", "NLSetAgentSet", "NLGetAgentSet", "NLGetGraph", "NLDfToList", "NLQuit")

importFrom(oro.nifti, nifti, is.nifti, as.nifti, convert.datatype)

importFrom(methods, as, new, slot, "slot<-")

useDynLib(RNiftyReg, .registration = TRUE, .fixes = "C_")

fcauc.fptp, fcauc.x, rocs.fptp, rocs.x, test.rocs

export(fcauc.fptp, fcauc.x, rocs.fptp, rocs.x, test.rocs, e.roc)
importFrom("graphics", "abline", "hist", "lines", "plot", "points","text")

importFrom(lattice, xyplot, panel.xyplot, ltext, strip.custom)
export(cROCData, pooledROC.BB, pooledROC.emp, pooledROC.kernel, pooledROC.dpm, AROC.bnp, AROC.kernel, AROC.sp, cROC.bnp, cROC.kernel, cROC.sp,
compute.threshold.pooledROC, compute.threshold.AROC, compute.threshold.cROC, plot.pooledROC, plot.AROC, plot.cROC, predictive.checks, print.pooledROC, summary.pooledROC, print.AROC, summary.AROC, print.cROC, summary.cROC, pauccontrol, densitycontrol, densitycontrol.aroc, mcmccontrol, priorcontrol.bnp, priorcontrol.dpm)