importFrom(plyr, aaply, laply, ddply, colwise)
importFrom("stats", "as.formula", "cov", "fisher.test", "mahalanobis",
"model.matrix", "pnorm", "quantile", "uniroot", "var")

importFrom("stats", "as.formula", "cov", "fisher.test", "mahalanobis", "model.matrix", "pnorm", "quantile", "uniroot", "var", "binomial", "glm", "predict", "sd")

# if using roxygen, make sure it doesn't create the NAMESPACE
"legend", "lines", "mtext", "par", "plot", "plot.default",
importFrom("stats", "aggregate", "density", "dist", "median", "rnorm",

importFrom("graphics", "arrows", "box", "plot", "segments", "text")

export(ouSim, ouSim.hansenBatch, ouSim.hansenSummary, ouSim.browntree, ouSim.hansentree, ouSim.ouchtree, ouSim.phylo)

importFrom(graphics, axTicks, axis, box, par)

importFrom("graphics", "abline", "lines", "plot", "text", "points")

## Export all non-private methods (anything w/out a dot prefix).

# These are implemented as "default" methods for the purpose
# of transitioning them to plain functions in a future version
# as soon as we know there are no packages relying on them

useDynLib("matrixStats", .registration = TRUE, .fixes = "C_")

importFrom(stats, complete.cases, cor, cov, cov2cor, effects,
fitted, loadings, na.omit, optim, pt, quantile, reshape,

importFrom("methods", "new", "show", "slot", "slot<-", "slotNames",
importFrom("stats", "coef", "logLik", "optim", "pnorm", "printCoefmat",

export(maxTPR)
importFrom("stats", "as.formula", "complete.cases", "glm", "pnorm", "quantile", "sd", "uniroot")

export(maxadjAUC)
importFrom("stats", "as.formula", "glm", "pnorm", "sd")

importFrom("graphics", "par", "plot", "points", "mtext", "abline", "legend")

importFrom("graphics", "par", "plot", "points", "mtext", "abline", "legend", "arrows", "rect")

pLausen92, qLausen92, pLausen94, qLausen94, pexactgauss, qexactgauss,

export(dmbbefdR, pmbbefdR, qmbbefdR, rmbbefdR, ecmbbefdR, mmbbefdR, tlmbbefdR)
export(dMBBEFDR, pMBBEFDR, qMBBEFDR, rMBBEFDR, ecMBBEFDR, mMBBEFDR, tlMBBEFDR)
importFrom(actuar, munif, levunif) #d,p,q,r in base R
importFrom(actuar, mbeta, levbeta) #d,p,q,r in base R
importFrom(gsl, dilog) #dilogarith function used somewere
export(dstpareto, pstpareto, qstpareto, rstpareto, ecstpareto, mstpareto)
#one-inflated distributions (on the unit interval)
export(doifun, poifun, qoifun, roifun, ecoifun, moifun)
export(doiunif, poiunif, qoiunif, roiunif, ecoiunif, moiunif)
export(doibeta, poibeta, qoibeta, roibeta, ecoibeta, moibeta)
export(doistpareto, poistpareto, qoistpareto, roistpareto, ecoistpareto, moistpareto)