"aes", "after_stat", "annotate", "element_blank", "element_text", "facet_grid",
"facet_wrap", "geom_blank", "geom_density", "geom_histogram","geom_hline", "geom_label", "geom_line",
"geom_point", "geom_smooth", "geom_violin", "geom_vline","ggplot", "ggplot_build", "guides", "labs",
"scale_x_continuous", "scale_y_continuous", "stat_density", "stat_summary", "theme",
export("get_gower_dist", "get_sil_widths", "make_clusters", "cluster_to_nexus", "write_partitioned_alignments",
"get_clockrate_table_BEAST2", "get_clockrate_table_MrBayes", "clockrate_summary", "clockrate_dens_plot", "clockrate_reg_plot",
"combine_log", "FBD_summary", "FBD_dens_plot", "FBD_tests1", "FBD_tests2", "FBD_normality_plot", "FBD_reshape",
"drop.dummy.beast", "drop.dummy.mb", "offset.to.dummy", "write.beast.treedata", "offset.to.dummy.metadata")

# The following is here to make devtools::check() happy
# as CRAN checks on some systems are complaining:
#    Namespaces in Imports field not imported from:
#     ‘CodeDepends’ ‘DT’ ‘PKI’ ‘shinycssloaders’ ‘tictoc’
#     All declared Imports should be used.
# All these package namespaces are used in inst/applications
# but this seems to be missed by devtools::check()

#     'CodeDepends' 'DT' 'PKI' 'shinycssloaders' 'tictoc'

importFrom("prettyGraphs", "prettyPlot", "contributionBars", "createColorVectorsByDesign", "minmaxHelper")

importFrom("stats", "dbinom", "dhyper", "optimise", "phyper", "qbeta", "rbinom")

importFrom("stats", "dbinom", "dhyper", "optimise", "phyper", "qbeta", "rbinom", "prop.test")

importFrom("stats", "dbinom", "dhyper", "optimise", "phyper", "qbeta", "rbinom", "prop.test", "pbinom", "pnorm", "qf")

importFrom("stats", "dbinom", "dhyper", "optimise", "phyper", "qbeta", "rbinom", "prop.test", "pbinom", "pnorm", "qf", "setNames")

importFrom("graphics", "lines", "mtext", "par", "plot", "title")

importFrom(methods, initialize, new, show, setGeneric, as, setMethod, setClass, representation, isGeneric, is)
importFrom("graphics", "axTicks", "axis", "layout", "lines", "par", "points", "polygon", "text")
importFrom("stats", "approxfun", "as.formula", "cor", "dbeta","dbinom", "median", "quantile")