export(logLik.gfit, ls.consensus, ls.tree, ltt, ltt95)
export(phylosig, plot.changesMap, plot.contMap, plot.cophylo, plot.densityMap, plot.fitMk, plot.fitPagel, plot.gfit, plot.phyl.RMA, plot.phylo.to.map)
export(plot.simBMphylo, plotBranchbyTrait, plot.phylosig, plotSimmap, plotThresh, plotTree, plotTree.barplot, plotTree.boxplot, plotTree.datamatrix, plotTree.errorbars)
export(repPhylo, reroot, rerootingMethod, rescaleSimmap, resolveAllNodes, resolveNode, rootedge.to.singleton, rotate.multi, rotateNodes)
export(sampleFrom, scores, scores.phyl.pca, setMap, sim.corrs, sim.ctt, sim.history, sim.Mk, sim.multiCtt, sim.multiMk, sim.ratebystate, sim.rates, simBMphylo)
export(skewers, splitEdgeColor, splitplotTree, splitTree, starTree, strahlerNumber)
export(threshBayes, threshDIC, threshState, tiplabels.cophylo, tipRotate, to.matrix, tree.grow, treeSlice)

export(add.arrow, add.color.bar, add.everywhere, add.random, add.simmap.legend)
export(add.species.to.genus, aic.w, allFurcTrees, allRotations, anc.Bayes, anc.ML)
export(anc.trend, ancThresh, applyBranchLengths, arc.cladelabels, as.multiPhylo)
export(backbone.toPhylo, bd, bmPlot, bind.tip, bind.tree.simmap, biplot.phyl.pca)
export(cladelabels, coef.phyl.RMA, collapse.to.star, collapseTree, compare.chronograms)
export(consensus.edges, contMap, cophylo, countSimmap, compute.mr, cospeciation, ctt)
export(density.anc.Bayes, density.multiSimmap, densityMap, densityTree, describe.simmap)
export(di2multi.simmap, dot.legend, dotTree, drop.clade, drop.leaves, drop.tip.contMap)
export(edgelabels.cophylo, edgeProbs, errorbar.contMap, estDiversity, evol.rate.mcmc)
export(evol.vcv, evolvcv.lite, exhaustiveMP, expand.clade, export.as.xml)
export(fancyTree, fastAnc, fastBM, fastDist, fastHeight, fastMRCA, findMRCA, fit.bd)
export(fit.yule, fitBayes, fitMk, fitmultiMk, fitpolyMk, fitDiversityModel, fitPagel)
export(gammatest, genus.to.species.tree, genSeq, geo.palette, geo.legend, get.treepos)
export(getCladesofSize, getDescendants, getExtant, getExtinct, getnode, getParent)
export(labelnodes, ladderize.simmap, lambda.transform, lik.bd, likMlambda)
export(make.era.map, make.simmap, make.transparent, map.overlap, Map.Overlap)
export(map.to.singleton, mapped.states, markChanges, matchLabels, matchNodes, mccr)
export(mcmcMk, mergeMappedStates, midpoint.root, minRotate, minSplit, minTreeDist)
export(modified.Grafen, mrp.supertree, multi.mantel, multiC, multiOU, multiRF)
export(paintBranches, paintSubTree, paste.tree, pbtree, pgls.Ives, pgls.SEy, phenogram)
export(phenogram95, phyl.cca, phyl.pairedttest, phyl.pca, phyl.resid, phyl.RMA)
export(phyl.vcv, phylo.heatmap, phylo.impute, phylo.toBackbone, phylo.to.map, phylANOVA)
export(phyloDesign, phylomorphospace, phylomorphospace3d, phyloScattergram, phylosig)
export(plot.anc.Bayes, plot.changesMap, plot.contMap, plot.cophylo, plot.densityMap)
export(plot.fitMk, plot.fitPagel, plot.gfit, plot.phyl.RMA, plot.phylo.to.map, plot.Qmatrix)
export(plot.simBMphylo, plotBranchbyTrait, plot.phylosig, plotSimmap, plotThresh, plotTree)
export(plotTree.singletons, plotTree.splits, plotTree.wBars, posterior.evolrate, posthoc)
export(ratebystate, ratebytree, rateshift, read.newick, read.simmap, reorder.backbonePhylo)
export(reorderSimmap, rep.multiPhylo, rep.phylo, repPhylo, reroot, rerootingMethod)
export(rescaleSimmap, resolveAllNodes, resolveNode, rootedge.to.singleton, rotate.multi)
export(sampleFrom, scores, scores.phyl.pca, setMap, sim.corrs, sim.ctt, sim.history, sim.Mk)
export(sim.multiCtt, sim.multiMk, sim.ratebystate, sim.rates, simBMphylo, skewers)
export(splitEdgeColor, splitplotTree, splitTree, starTree, strahlerNumber)
export(threshBayes, threshDIC, threshState, tiplabels.cophylo, tipRotate, to.matrix)