importFrom("rJava", ".jaddClassPath", ".jcall", ".jcast", ".jclassLoader", ".jclassPath", ".jengine", ".jinit", ".jlong", ".jnew", ".jnull", ".jpackage")
importFrom("XML", "xmlApply", "xmlName", "xmlRoot", "xmlTreeParse", "xmlValue")

importFrom("rJava", ".jaddClassPath", ".jcall", ".jcast", ".jclassLoader", ".jengine", ".jinit", ".jlong", ".jnew", ".jnull", ".jpackage")

importFrom("graphics", "axis", "box", "boxplot", "matplot", "par", "plot", "title")
importFrom("stats", "dist", "median", "rexp", "runif")

"pnorm", "qchisq", "quantile", "rnorm", "runif", "terms",

importFrom(stats, "predict", "simulate", "as.formula", "gaussian","dbinom", "dnorm", "rbeta", "rgamma", "rnorm")

exportPattern("^[[:alpha:]]+")
importFrom(MASS, glm.nb, rnegbin)
S3method(plot, hnp)
importFrom("graphics", "legend", "matplot", "plot", "points")
importFrom("stats", "Gamma", "anova", "aov", "as.formula", "binomial",
"coef", "fitted", "gaussian", "glm", "glm.control",
"inverse.gaussian", "lm", "model.matrix", "poisson",
"predict", "proj", "qnorm", "quantile", "quasibinomial",
"quasipoisson", "rbeta", "rbinom", "resid", "residuals",
"rgamma", "rmultinom", "rnbinom", "rnorm", "rpois",
"rstandard", "rstudent", "runif", "sd", "simulate", "terms",
"weights")

# Default NAMESPACE created by Alex-Antoine Fortin <alex@fortin.bio>
export(cond, nlreg, rsm, student, logistic, logWeibull, extreme,
Huber, dHuber, pHuber, qHuber, rHuber, Dmean, Dvar,
expInfo, mpl, obsInfo, param, var2cor, nlreg.diag,

rsm.fit, cond.glm, tem, fraser.reid, lik.ci)

import(httr, XML)
export(importFA, blastSeq, getGeneLocation, importXML, importGTF)

import(httr, XML, stringr)
export(importFA, blastSeq, getEnsgInfo, getGeneLocation, getGeneSeq, importXML, importGTF, importGFF3)

import(httr, XML, stringr, MASS, R.utils, stats, graphics)
export(importFA, blastSeq, getEnsgInfo, getGeneLocation, getGeneSeq, importXML, importGTF, importGFF3, importPedMap,
importBlastTab, subDose, subPhased, subGprobs, getAssemblies, speciesFigure)

import(httr, XML, stringr, MASS, R.utils, data.table)
importFrom("graphics", axis, lines, plot, polygon, rect, text)
importFrom("stats", loess, median, predict, quantile)
importFrom("utils", download.file, read.csv, read.table, setTxtProgressBar, txtProgressBar, write.table, sessionInfo)
export(importBed, importFA, blastSeq,exportBed, exportFA, findSpecies, getEnsgInfo, getGeneLocation, getGeneSeq, importXML,
subDose, subPhased, subGprobs, targetScan, tableSpecies, species, getAnnotation,