export(allCombs, makeFuzzy, selectCases, selectCases1, some,
truthTab, some.truthTab, cstt, mvtt, fstt, tt2df,
importFrom(utils, head, tail, combn, packageVersion)
importFrom(stats, as.dist, cutree, hclust, setNames)

msc, asf, csf, condTbl, as.condTbl, coherence, minimalizeCsf,
importFrom(utils, head, tail, combn, packageVersion, getFromNamespace)
importFrom(matrixStats, rowMins, rowMaxs, rowAnys, rowAlls,

cyclic, full.tt, is.inus, is.submodel, identical.model, minimalize,

cyclic, full.ct, is.inus, is.submodel, identical.model, minimalize,
truthTab, cstt, fstt, mvtt, full.tt, tt2df

truthTab, cstt, fstt, mvtt, full.tt, tt2df,

importFrom(utils, head, tail, combn, packageVersion, getFromNamespace, flush.console)

export(conCovOpt, selectMax, multipleMax, findOutcomes, reprodAssign, DNFbuild,
importFrom(ggplot2, ggplot, geom_rect, geom_point, geom_line, aes_string)

importFrom("grDevices", "bmp", "chull", "dev.off", "jpeg", "pdf", "png", "postscript")
importFrom("graphics", "abline", "arrows", "barplot", "hist", "lines", "par", "points", "segments", "text", "layout")
importFrom("stats", "cov", "cutree", "dist", "hclust", "kmeans", "pnorm", "qnorm", "qqnorm", "qt", "quantile", "sd", "var")

importFrom("graphics", "abline", "hist", "lines", "plot", "points", "segments")

importFrom(ape, as.phylo, branching.times, dist.dna, Ntip, reorder.phylo)
importFrom(stats, hclust, rbinom, reorder, runif)

importFrom(ape, as.phylo, branching.times, dist.dna, Ntip,

importFrom(graphics, axis, lines, mtext, plot, points, segments)
importFrom(stats, BIC, hclust, nlminb, pchisq, rbinom, reorder, runif)

importFrom(phangorn, edQt, lli, phyDat, pml, pml.fit, pml.free, pml.init)

importFrom("stats", "coef", "dgamma", "dlnorm", "dnbinom", "dnorm",
"dweibull", "glm", "integrate", "optim", "optimize",
"pgamma", "plnorm", "poisson", "pweibull", "qgamma",
"qlnorm", "qnorm", "qt", "quantile", "qweibull", "rlnorm",

importFrom("stats", "fitted", "as.formula", "terms", "model.frame", "model.response",
"model.matrix", "lm", "glm", "aggregate", "var")