read.dna, write.dna, reorder.phylo, dist.nodes, collapse.singles, rotate, prop.clades)
importFrom(igraph, graph, graph_from_adjacency_matrix, layout_with_kk, plot.igraph,
importFrom(stats, AIC, BIC, logLik, reorder, update, optim, optimize, constrOptim, na.omit,
importFrom(utils, read.table, download.file, citation, stack, installed.packages, write.table, combn)
phyDat2alignment, AICc, readDist, writeDist, discrete.gamma,

di2multi, multi2di, .uncompressTipLabel, .compressTipLabel, prop.part, Ntip,
read.dna, write.dna, reorder.phylo, dist.nodes, collapse.singles, rotate, prop.clades,
fastme.bal, fastme.ols, Nnode, image.DNAbin, ONEwise)
shortest_paths, set.edge.attribute, set_edge_attr, decompose, components, groups,
importFrom(grDevices, rgb, rainbow, adjustcolor, col2rgb)
dist.ml, dist.p, upgma, wpgma, write.nexus.splits, read.nexus.splits,
splitsNetwork, simSeq, SH.test, bootstrap.pml, bootstrap.phyDat, RF.dist, KF.dist,
pml.fit, pml.init, pml.free, edQt, lli, cladePar, addConfidences, createLabel,
countCycles, SOWH.test, plot.networx, presenceAbsence, as.networx.splits, addTrivialSplits,
phyDat2alignment, AICc, readDist, writeDist, discrete.gamma, matchSplits,
#S3method(as.AAbin, phyDat) # momentan raus

splitsNetwork, simSeq, SH.test, bootstrap.pml, bootstrap.phyDat, RF.dist, wRF.dist,

node.depth.edgelength, drop.tip, stree, rtree, rcoal, rmtree, is.ultrametric, .PlotPhyloEnv,
fastme.bal, fastme.ols, Nnode, image.DNAbin, ONEwise, as.AAbin, as.phyDat.AAbin, image.AAbin)
vcount, graph.edgelist, graph_from_edgelist, topo_sort, layout_nicely)
dfactorial, ldfactorial, hadamard, nni, allSitePattern, allSplits, allCircularSplits, fhm,
KF.dist, path.dist, sprdist, SPR.dist, rNNI,
removeUndeterminedSites, phyDat2MultipleAlignment, delta.score, maxCladeCred, as.MultipleAlignment)

fastme.bal, fastme.ols, Nnode, image.DNAbin, ONEwise, as.AAbin, as.phyDat.AAbin, image.AAbin,
as.bitsplits, as.bitsplits.prop.part, arecompatible, is.compatible, is.compatible.bitsplits)
importFrom(graphics, plot, plot.default, plot.new, plot.window, text, par, abline, strwidth, axis, title, segments,
read.nexus.networx, write.nexus.networx, write.splits, write.nexus.dist, pmlPart,
nnls.splits, nnls.phylo, nnls.networx, neighborNet, pmlPart2multiPhylo, multiphyDat2pmlPart,
SOWH.test, presenceAbsence, as.networx.splits, addTrivialSplits, removeTrivialSplits,
distinct.splits, c.splits, dna2codon, codon2dna, genlight2phyDat,