import(httr, XML, stringr, MASS, R.utils, data.table, GenomicTools.fileHandler)
importFrom("graphics", axis, lines, plot, polygon, rect, text, par)
importFrom("stats", loess, median, predict, quantile, density)
export(coverageDensity, blastSeq, findSpecies, getEnsgInfo, getGeneLocation, getGeneSeq,
getSequenceFromNCBI, intersectXMLAnnot, plotCoverage, subDose, subPhased, subGprobs, targetScan, tableSpecies, species, getAnnotation,

importFrom("graphics", "axis", "lines", "plot", "polygon", "rect","text")
importFrom("stats", "loess", "median", "predict", "quantile")
importFrom("utils", "download.file", "read.csv", "read.table","setTxtProgressBar", "txtProgressBar", "write.table")
export(importFA, blastSeq,exportBed, exportFA, getEnsgInfo, getGeneLocation, getGeneSeq, importXML,

import("stats", "graphics", "rgl", "scatterplot3d", "ape")

export(hommel, discoveries, fdp, tdp, localtest, concentration)

export(hommel, discoveries, tdp, fdp, localtest, concentration)

exportMethods(show, "[", coerce, as.matrix, as.hdist, as.vector, length)
export(boot2fuzzy, bootplot, bootmedoids, boothopach, dplot,
vdisscor, vdissabscor, distancematrix, distancevector, dissvector,
disseuclid, disscor, dissabscor, disscosangle, dissabscosangle,
silcheck, msscheck, digits, cutdigits, cutzeros, nonzeros,
paircoll, collap, msscollap, mssmulticollap, mssrundown,
msscomplete, newnextlevel, newsplitcluster, hopach, makeoutput,

importFrom(graphics, abline, axis, barplot, box, image, mtext, par,

# Generated by roxygen2 (4.1.0): do not edit by hand
export(hornpa)

importFrom("graphics", "abline", "arrows", "axis", "mtext", "par", "points")
importFrom("stats", "approx", "lm", "quantile", "sd", "update")

importFrom("stats", "approx", "sd", "update", "IQR", "median", "quantile")

useDynLib(hqreg, .registration=TRUE, .fixes = "C_")

importFrom("graphics", "legend", "par", "points", "polygon", "rasterImage", "rect", "title")
importFrom("grDevices", "chull", "colorRamp", "dev.off", "hcl", "heat.colors", "palette", "png", "rgb")
importFrom("stats", "approx", "as.dist", "as.formula", "dist", "dnorm", "glm", "lm", "lowess", "sd", "spline", "splinefun", "terms", "update.formula")