importFrom(extrafont, embed_fonts, font_import, fonts, loadfonts)

export(add.color.bar, add.everywhere, add.random, add.simmap.legend, add.species.to.genus, allFurcTrees, anc.Bayes, anc.ML)
export(backbone.toPhylo, bmPlot, bind.tip, biplot.phyl.pca, branching.diffusion,brownie.lite, brownieREML)
export(densityMap, describe.simmap, di2multi.simmap, drop.clade, drop.leaves, drop.tip.simmap)
export(make.era.map, make.simmap, map.overlap, map.to.singleton, matchNodes, mergeMappedStates, midpoint.root, minRotate)
export(minSplit, mrp.supertree, multi.mantel, multiC, multiRF)
export(ratebystate, rateshift, read.newick, read.simmap, reorder.backbonePhylo, reorderSimmap, repPhylo, reroot, rerootingMethod)
export(sampleFrom, sim.corrs, sim.history, sim.ratebystate, sim.rates, skewers, splitplotTree, splitTree, starTree, strahlerNumber)

export(backbone.toPhylo, bmPlot, bind.tip, biplot.phyl.pca, branching.diffusion, brownie.lite, brownieREML)
export(densityMap, describe.simmap, di2multi.simmap, drop.clade, drop.leaves, drop.tip.simmap, drop.tip.singleton)
export(fancyTree, fastAnc, fastBM, fastHeight, fastMRCA, findMRCA, fitBayes, fitDiversityModel)
export(paintBranches, paintSubTree, paste.tree, pbtree, pgls.Ives,phenogram, phyl.cca, phyl.pairedttest, phyl.pca, phyl.resid, phyl.RMA)
export(phyl.vcv, phylo.toBackbone,phylo.to.map, phylANOVA, phyloDesign, phylomorphospace, phylomorphospace3d, phylosig)
export(plotBranchbyTrait, plot.contMap, plot.densityMap, plot.phylo.to.map, plotSimmap, plotThresh, plotTree, plotTree.singletons)
export(rescaleSimmap, rotateNodes, roundBranches, roundPhylogram, rstate)

export(lambda.transform, likMlambda, locate.yeti, ls.tree, ltt, ltt95)
export(sampleFrom, setMap, sim.corrs, sim.history, sim.ratebystate, sim.rates, skewers, splitplotTree, splitTree, starTree)

export(densityMap, describe.simmap, di2multi.simmap, drop.clade, drop.leaves, drop.tip.contMap, drop.tip.densityMap)
importFrom(ape, compute.brlen, cophenetic.phylo, di2multi, dist.dna, dist.nodes, drop.tip, extract.clade, is.binary.tree)
importFrom(ape, is.monophyletic, is.rooted, is.ultrametric, matexpo, mrca, multi2di, neworder_phylo, neworder_pruningwise)
importFrom(ape, nodelabels, Ntip, pic, plot.phylo, prop.part, read.tree, reorder.phylo, root, rotate, rtree, stree, tiplabels)
importFrom(ape, unroot, vcv, vcv.phylo, write.tree)