importFrom("stats", "integrate", "nlm", "runif", "uniroot")

export(retrain, retrain.signaltrans, gene2pathway, gene2pathway.signaltrans, getComponents, get.elements.by.pathway, color.pathway.by.elements, ORF2Entrez, Entrez2ORF, test.overrepresentation)

importFrom("kernlab", "ksvm", "kernelMatrix", "alphaindex", "coef", "SVindex", "predict")
importFrom("biomaRt", "useMart", "getBM", "listDatasets", "useDataset")

export(retrain, retrain.signaltrans, gene2pathway, gene2pathway.signaltrans, getComponents, get.elements.by.pathway, color.pathway.by.elements, ORF2Entrez, Entrez2ORF)

import(KEGGSOAP)
importFrom("kernlab", "ksvm", "kernelMatrix", "alphaindex", "coef", "SVindex", "predict")
importFrom("AnnotationDbi", "mget", "ls")
importFrom("RBGL", "connectedComp")
importFrom("biomaRt", "useMart", "getBM", "listDatasets", "useDataset")
export(retrain, retrain.signaltrans, gene2pathway, gene2pathway.signaltrans, getComponents, get.elements.by.pathway, color.pathway.by.elements, ORF2Entrez, Entrez2ORF, test.overrepresentation)

import(KEGGSOAP)
importFrom("kernlab", "ksvm", "kernelMatrix", "alphaindex", "coef", "SVindex", "predict")
importFrom("AnnotationDbi", "mget", "ls")
importFrom("RBGL", "connectedComp")
importFrom("biomaRt", "useMart", "getBM", "listDatasets", "useDataset")
export(retrain, retrain.signaltrans, gene2pathway, gene2pathway.signaltrans, getComponents, get.elements.by.pathway, color.pathway.by.elements, ORF2Entrez, Entrez2ORF, test.overrepresentation)

importFrom("graphics", "axis", "layout", "legend", "par", "rect",

export(BHcorrection, classify, importance, NCPUS, seedsFinder, signatureFinder, BICs, testGE, puttingAllTogether, removeGeneFrom, signatureSummaryTable, ensembleTable, searchResultsSummaryTable, goodAndPoorClassification)

export(BHcorrection, classify, importance, NCPUS, seedsFinder, signatureFinder,
BICs, testGE, puttingAllTogether, removeGeneFrom, signatureSummaryTable, ensembleTable,

#useDynLib(genepop, .registration = TRUE, .fixes = "C_")
# why ? - urther steps recommended there are not compatible with the automatically generated RcppExports.cpp