dist.haplotype.loci, expand.genotype, Fst, genind2loci, getAlleles,
heterozygosity, hw.test, is.phased, is.snp, LD, LD2, loci2genind, mst,
MMD, nuc.div, proba.genotype, R2.test, read.gtx, read.loci, read.vcf,
rr.test, site.spectrum, tajima.test, theta.h, theta.k, theta.msat,

diffHaplo, dist.haplotype.loci, expand.genotype, Fst, genind2loci,
geod, geoTrans, getAlleles, getGenotypes, getPloidy, H, haploNet,
haploFreq, haplotype, heterozygosity, hw.test, is.phased, is.snp,
LD, LD2, loci2genind, mst, MMD, nuc.div, proba.genotype, R2.test,
read.gtx, read.loci, read.vcf, replot, rr.test, site.spectrum,

export(alleles2loci, amova, as.igraph.haploNet, as.loci, as.network.haploNet,
geod, geoTrans, getAlleles, getGenotypes, getINFO, getPloidy, H,
haploNet, haploFreq, haplotype, heterozygosity, hw.test, is.phased,
is.snp, LD, LD2, loci2genind, mst, MMD, nuc.div, proba.genotype,
R2.test, rangePOS, read.gtx, read.loci, read.vcf, replot, rr.test,
selectQUAL, site.spectrum, tajima.test, theta.h, theta.k, theta.msat,
theta.s, theta.tree, VCFheader, VCFlabels, VCFloci, write.loci)

plot, segments, strheight, symbols, text)
importFrom(stats, as.dist, cophenetic, density, dist, integrate, na.omit,
nlminb, pbeta, pchisq, pnorm, printCoefmat, rpois, uniroot,
importFrom(utils, as.roman, edit, read.table, write.table)

LDscan, LDmap, loci2genind, mst, MMD, nuc.div, proba.genotype,
R2.test, rangePOS, read.gtx, read.loci, read.vcf, replot,
rr.test, selectQUAL, site.spectrum, tajima.test, theta.h,
theta.k, theta.msat, theta.s, theta.tree, VCFheader, VCFlabels,

dist.haplotype.loci, dist.asd, expand.genotype, F2, F3, F4,
Fst, genind2loci, geod, geoTrans, geoTrans2, getAlleles,
getGenotypes, getHaploNetOptions, getINFO, getPloidy, getPhi,
H, haploNet, haploFreq, hap.div, haplotype, heterozygosity,
hw.test, is.phased, is.snp, LD, LD2, LDscan, LDmap,
loci2alleles, loci2genind, loci2SnpMatrix, mjn, msn, mst, MMD,
mutations, nuc.div, plotNetMDS, proba.genotype, R2.test,
rangePOS, rarefactionplot, read.gtx, read.loci, read.vcf,
replot, rhost, rmst, rr.test, Rst, selectQUAL,
setHaploNetOptions, site.spectrum, stairway, sw, tajima.test,
base.freq, dist.dna, dist.nodes, fancyarrows, floating.pie.asp,
matplot, mtext, par, points, polygon, plot, plot.default, rect,
segments, strheight, strwidth, symbols, text, xinch)
median, na.omit, nlminb, pbeta, pchisq, pnorm, printCoefmat, rpois,