importFrom("graphics", "hist", "lines", "par", "plot", "text")
importFrom("stats", "dcauchy", "dgamma", "dlnorm", "dlogis", "dnorm",
"glm", "model.frame", "na.fail", "nlm", "pbeta", "pcauchy",
"pgamma", "plnorm", "plogis", "pnorm", "poisson",

importFrom("graphics", "axis", "hist", "lines", "par", "plot", "rug")

optim, optimize, pchisq, qchisq, approx)

export(inference.Ecar, phys2eventtime, remap.cumsum, remap.cumprod, remap.event.reindex, ees, eesPlot)

phys2eventtime, remap.cumsum, remap.cumprod, remap.event.reindex, eesSummary,
import(sandwich, stats, testthat, xts, zoo)

importFrom("stats", "as.formula", "glm", "na.omit", "vcov")

importFrom("grDevices", "dev.copy2pdf", "dev.off", "postscript", "rgb")
importFrom("graphics", "abline", "arrows", "assocplot", "axTicks",
"axis", "boxplot", "contour", "curve", "dotchart",
"hist", "legend", "lines", "mosaicplot", "mtext", "par", "plot",
importFrom("stats", "AIC", "IQR", "chisq.test", "coef", "dbeta",
"density", "dt", "gaussian", "glm", "integrate", "lm",
"model.response", "pbeta", "pchisq", "poisson", "predict",
"pt", "qbeta", "qnorm", "qqline", "qqnorm", "qqplot",
"quantile", "rbeta", "rchisq", "relevel", "rnorm", "runif",

importFrom("graphics", "abline", "axis", "box", "contour", "lines",
"mtext", "par", "plot", "points", "title")

exportPattern("^[[:alpha:]]+")
export(AnalyzeAssembly, CalcD, CalcPartD, CalcPopD, HetLevels, HighLevelTree, PPSDiscrete, ResSel)
export(SampleTrees, DriftSim, SelSim, ReplTable, MaxTips, CoalSim, GenomeSym)

importFrom(graphics, abline, lines, plot, points, text)
importFrom(stats, density, lm, pnorm, sd)

constrMLE.oddsratio, getDeltaGrid, getPDQD, getPI, getPrange,
ucControl, createR, fillsquare, getColor, plotRankMat, plotT, orderMat,
complete.cases,fisher.test, dhyper, phyper, qnorm, pnorm,
importFrom(graphics, points, lines, plot, polygon, par, mtext)

borrControl, borrTest, borrOrdering, borrPvals, borrPreCalc)

borrControl, borrTest, borrOrdering, borrPvals, borrPreCalc, powerBorr,

export(dperm, qperm, pperm, rperm, perm.test, perm.test.default,
perm.test.formula, cscores, cscores.default, cscores.factor, cscores.Surv,