export(hisse.old, hisse.null4.old, MarginRecon.old, MarginReconGeoSSE.old, SupportRegion.old, TransMatMaker.old, ParDrop, ParEqual, plot.hisse.states, SimulateHisse, SimToPhylo, GetModelAveRates, GeoHiSSE.old, TransMatMakerGeoHiSSE.old, SimulateGeoHiSSE, TranslateParsMakerGeoHiSSE, plot.geohisse.states, SupportRegionGeoSSE.old, GetAICWeights, MuHiSSE, TransMatMakerMuHiSSE, MarginReconMuHiSSE, SupportRegionMuHiSSE, GeoHiSSE, TransMatMakerGeoHiSSE, MarginReconGeoSSE, SupportRegionGeoSSE, generateMiSSEGreedyCombinations, makeHiSSELikelihood, plot.muhisse.states, MiSSE, MiSSEGreedy, MarginReconMiSSE, SupportRegionMiSSE, plot.misse.states, hisse, TransMatMakerHiSSE, MarginReconHiSSE, SupportRegionHiSSE, makeGeoHiSSELikelihood, PruneRedundantModels)

export(hisse, hisse.null4, MarginRecon, MarginReconGeoSSE, SupportRegion, TransMatMaker, ParDrop, ParEqual, BisseToHisse, plot.hisse.states, SimulateHisse, SimToPhylo, GetModelAveRates, GetModelAveEqFreqs, GeoHiSSE, TransMatMakerGeoHiSSE, SimulateGeoHiSSE, TranslateParsMakerGeoHiSSE, plot.geohisse.states, SupportRegionGeoSSE, GetAICWeights, MuHiSSE, TransMatMakerMuHiSSE, MarginReconMuHiSSE, SupportRegionMuHiSSE, fGeoHiSSE, TransMatMakerfGeoHiSSE, MarginReconfGeoSSE, makeHiSSELikelihood, plot.muhisse.states, MiSSE, MiSSEGreedy, MarginReconMiSSE, SupportRegionMiSSE, plot.misse.states)

export(hisse, hisse.null4, MarginRecon, MarginReconGeoSSE, SupportRegion, TransMatMaker, ParDrop, ParEqual, BisseToHisse, plot.hisse.states, SimulateHisse, SimToPhylo, GetModelAveRates, GetModelAveEqFreqs, GeoHiSSE, TransMatMakerGeoHiSSE, SimulateGeoHiSSE, TranslateParsMakerGeoHiSSE, plot.geohisse.states, SupportRegionGeoSSE, GetAICWeights, MuHiSSE, TransMatMakerMuHiSSE, MarginReconMuHiSSE, SupportRegionMuHiSSE, fGeoHiSSE, TransMatMakerfGeoHiSSE, MarginReconfGeoSSE, makeHiSSELikelihood, plot.muhisse.states, MiSSE, MiSSEGreedy, MarginReconMiSSE, SupportRegionMiSSE, plot.misse.states, hisse.new, TransMatMakerfHiSSE, MarginReconfHiSSE, SupportRegionfHiSSE)