importFrom(graphics, par, rug, hist, smoothScatter, plot, axis, points, pairs)

importFrom("grDevices", "bmp", "cairo_ps", "dev.off", "jpeg", "png", "rgb", "tiff")

export(corLinkcommCentrality, cutDendrogramAt, getAllNestedComm, getClusterRelatedness, getCommunityCentrality, getCommunityConnectedness, getCommunityMatrix, getLinkCommunities, getLinkCommDensities, getNestedHierarchies, getNodesIn, layout.spencer.circle, linkcomm2cytoscape, newLinkCommsAt, newLinkCommsAt, orderCommunities, plotLinkCommDend, plotLinkCommGraph, plotLinkCommMembers, plotLinkCommSummComm, plotLinkCommSumm)
useDynLib(linkcomm, getEdgeSimilarities, hclustLinkComm, hclustPlotOrder, getLinkDensities, cutTreeAt, getJaccards)

import(igraph, RColorBrewer, dynamicTreeCut, grid, utils)
export(corLinkcommCentrality, cutDendrogramAt, edge.duplicates, getAllNestedComm, getClusterRelatedness, getCommunityCentrality, getCommunityConnectedness, getCommunityMatrix, getEdgesIn, getLinkCommunities, LinkDensities, getNestedHierarchies, getNodesIn, getOCG.clusters, graph.feature, layout.spencer.circle, linkcomm2cytoscape, newLinkCommsAt, newLinkCommsAt, numberEdgesIn, orderCommunities, plotLinkCommDend, plotLinkCommGraph, plotLinkCommMembers, plotLinkCommSummComm, plotLinkCommSumm, plotOCGraph, read.OCG, which.communities, integer.edgelist, linkcomm2clustnsee, get.community.overlaps, get.shared.nodes, meta.communities)
useDynLib(linkcomm, edgeDuplicates, getEdgeSimilarities, hclustLinkComm, hclustPlotOrder, getLinkDensities, cutTreeAt, getJaccards, getOCGclusters, readOCG, getEdgeSimilarities_all)

importFrom("graphics", "abline", "barplot", "lines", "mtext", "par","plot", "plot.new", "points", "polygon", "text")
importFrom("stats", "as.dendrogram", "as.dist", "cor", "dendrapply","hclust", "is.leaf", "lm", "runif")

export(corLinkcommCentrality, cutDendrogramAt, getAllNestedComm, getClusterRelatedness, getCommunityCentrality, getCommunityConnectedness, getCommunityMatrix, getEdgesIn, getLinkCommunities, getLinkCommDensities, getNestedHierarchies, getNodesIn, graph.feature, layout.spencer.circle, linkcomm2cytoscape, newLinkCommsAt, newLinkCommsAt, orderCommunities, plotLinkCommDend, plotLinkCommGraph, plotLinkCommMembers, plotLinkCommSummComm, plotLinkCommSumm)