getlikelihood, getlikelihood.sna, getQ, getVAF, getZ, initialcna,
initialcnacopy, initialP, initialsna, sampcna, sampcnacopy, sampP,
importFrom("stats", "dnorm", "rmultinom", "runif", "sd")

export(anovaSummarized, boot, bootCor, bootPaired, corDemo, confIntDemo, groupedBar,
missingLevel, permTest, permTestCor, permTestPaired, qqPlotDemo, stemPlot)

importFrom("graphics", "abline", "barplot", "hist", "legend", "lines",
"mtext", "par", "plot", "points", "stem", "title")
importFrom("stats", "complete.cases", "cor", "pf", "qnorm", "qqline",
"qqnorm", "qt", "quantile", "rbeta", "rbinom", "rchisq",
"rexp", "rf", "rnorm", "rt", "runif", "sd", "terms")

importFrom("grDevices", "col2rgb", "colorRamp", "dev.new", "grey",
importFrom("graphics", "abline", "hist", "legend", "lines", "matplot",
importFrom("stats", "aggregate", "cor", "lm", "loess", "model.matrix",
"quantile", "rbinom", "reshape", "rmultinom", "rnorm",

importFrom("graphics", "abline", "axis", "hist", "layout", "legend","lines", "mtext", "par", "plot", "points", "text")
importFrom("stats", "aggregate", "as.formula", "cor", "deriv", "loess","loess.control", "optim", "predict", "qqplot", "sd","uniroot")

export(catpredi.survival, comp.cutpoints.survival, controlcatpredi.survival, plot.catpredi.survival, summary.catpredi.survival, catpredi, comp.cutpoints, controlcatpredi, plot.catpredi, summary.catpredi)

"model.response", "pnorm", "predict", "residuals", "sd")

# use importFrom to avoid conflict with reset

importFrom(stats, sd, qnorm, runif, rnorm, rchisq, ts, plot.ts)

importFrom("grDevices", "cm", "col2rgb", "dev.off", "png", "rgb")
importFrom("graphics", "abline", "box", "hist", "layout", "lcm", "legend", "matplot", "par", "plot", "points", "polygon", "rect", "segments", "text")
importFrom("parallel", "makeCluster", "clusterCall", "clusterApply", "stopCluster")
importFrom("stats", "median", "p.adjust", "prcomp", "predict", "quantile", "rbinom", "runif", "var", "wilcox.test")

importFrom("stats", "cor", "cor.test", "pchisq", "phyper")

importFrom("stats", "cor", "cor.test", "pchisq", "phyper","p.adjust")