# Default NAMESPACE created by R
# Remove the previous line if you edit this file
# Export all names
exportPattern("^[^\\.]")
# Import all packages listed as Imports or Depends
import(methods, network, ggplot2, plyr, knitr)
importFrom(utils, "packageDescription")
importFrom(ape, "as.character.DNAbin", "as.DNAbin", "as.DNAbin.alignment", "as.DNAbin.character",
"as.DNAbin.list", "as.list.DNAbin", "as.matrix.DNAbin", "cbind.DNAbin", "c.DNAbin",
"[.DNAbin", "labels.DNAbin", "print.DNAbin", "rbind.DNAbin", "dist.dna", "nj", "bionj",
"fastme.bal", "fastme.ols", "mst", "root", "unroot", "is.rooted", "ladderize","drop.tip",
"plot.phylo", "print.phylo", "c.multiPhylo", "[.multiPhylo", "[[<-.multiPhylo",
"[[.multiPhylo", "$<-.multiPhylo", "$.multiPhylo", "plot.multiPhylo", "print.multiPhylo",
"axisPhylo", ".compressTipLabel", "clado.build")
importFrom(adegenet, "bluepal", "redpal", "greenpal", "seasun", "spectral", "funky", "num2col",
"fac2col", "any2col", "transp", "findMutations", "findMutations.DNAbin")
importFrom(RColorBrewer, "brewer.pal.info", "brewer.pal")
importFrom(reshape2, "melt")
importFrom(sna, "gplot.layout.fruchtermanreingold", "geodist")
importFrom(ggmap, "geocode", "get_map", "ggmap")
importFrom(networkDynamic, "activate.edges", "network.extract", "is.networkDynamic", "network.collapse")
importFrom(scales, "date_breaks", "date_format")
## IMPORTS TO FIX LATER ##
## importFrom(plyr, "rename") # must be something else
## importFrom(network, "network.vertex.names", "network.vertex.names<-",
##            "delete.vertices", "network.initialize", "add.edge", "%n%", "%n%<-",
##            "network.edgecount", "set.network.attribute", "as.matrix.network", "plot.network",
##            "is.network")
## importFrom(ggplot2, "geom_point", "element_blank", "theme_update", "theme_bw", "ggplot", "geom_segment",
##            "scale_y_continuous", "scale_x_continuous", "geom_text", "scale_colour_discrete",
##            "scale_colour_brewer", "scale_colour_gradientn", "scale_y_discrete", "geom_hline", "aes", "aes_string")