maxCladeCred, as.MultipleAlignment, threshStateC, coords, add.tips,

export(parm, RunRMD, SimRMD, RunRMDEff, SimRMDEff)
"quantile", "rbeta", "rgamma", "rnorm", "runif", "sd",

export(parm, RunRMD, SimRMD, RunRMDEFF, SimRMDEFF, plot.RunRMDVal, Tox2nTTP, GenToxProb)
import(coda, boot, rjags, mvtnorm, ggplot2)
importFrom("utils", "write.table", "modifyList", "txtProgressBar", "setTxtProgressBar")

exportPattern("competition", "example1", "example2", "example3", "example4", "example5", "example6", "example7", "example8", "example9", "example10", "example11", "example12", "example13", "example14", "example15", "exponential", "flowField", "lindemannMechanism", "logistic", "lotkaVolterra", "monomolecular", "nullclines", "numericalSolution", "phasePortrait", "simplePendulum", "SIR", "stability", "trajectory", "vanDerPol", "vonBertalanffy")

exportPattern("competition", "example1", "example2", "example3", "example4", "example5", "example6", "example7", "example8", "example9", "example10", "example11", "example12", "example13", "example14", "example15", "exponential", "flowField", "lindemannMechanism", "logistic", "lotkaVolterra", "monomolecular", "nullclines", "numericalSolution", "phasePortrait", "simplePendulum", "SIR", "stability", "trajectory", "vanDerPol", "vonBertalanffy")
importFrom(deSolve, ode)

importFrom("stats", "na.omit", "pnorm", "quantile", "sd", "runif")
importFrom("reshape", "melt")
importFrom("grid", "grobName")
importFrom("dplyr", "arrange", "group_by", "mutate", "%>%")
import("ggplot2")
export(assign_observed_data, cum_dev_rate, get_cycle, get_total_info, phen_model_forecast, phen_model_gen2, phen_model, plot_phen_forecast, plot_phen_model, sensitivity, summary_sensitivity, boxplot_sensitivity, cdl_check)

importFrom("stats", "approxfun", "cor", "fft", "integrate", "na.omit",
"nls", "optim", "predict", "splinefun", "var")

importFrom(graphics, "plot", "lines", "points", "abline")
"nls", "optim", "predict", "splinefun", "var", "sd", "rnorm")
exportMethods(phenoPhase, rsquare, plot, integrateTimeserie, detectSeasons)