importFrom("graphics", "lines", "mtext", "par", "plot", "points", "title")

importFrom("stats", "cor", "density", "fft", "frequency", "rnorm",

importFrom("grDevices", "dev.new", "dev.off", "heat.colors", "palette",
importFrom("graphics", "abline", "contour", "hist", "par",
importFrom("stats", "dist", "lm", "pnorm", "qexp", "qgamma", "rbeta",
"rexp", "rgamma", "rnorm", "rpois", "runif")

importFrom("graphics", "abline", "axis", "curve", "hist",
"hist.default", "mtext", "par", "plot", "segments", "title")
importFrom("stats", ".getXlevels", "coef", "constrOptim", "density",
"model.weights", "na.omit", "nlm", "nlminb", "optim",
"optimize", "ppoints", "printCoefmat", "pt", "qqplot",
"rexp", "rnorm", "runif", "sd", "splinefun", "uniroot",
## MM: don't like this *Pattern(): exports much too much, incl all S3 methods

#Island generation now in ProjectionBasedClustering package

importFrom("grDevices", "dev.off", "png", "contourLines", "col2rgb", "colorRamp")
importFrom("stats", "median", "qnorm", "sd", "quantile", "runif", "dist","cmdscale")

importFrom("spam", "solve.spam", "determinant.spam.chol.NgPeyton", "is.spam", "as.spam",

import(gMWT, snpStats, parallel, plotrix, Rcpp, RcppArmadillo)
export(calcDistances, eQTL, genotypePlot, getRegionsOI, gtfToBed, mdr, recodeData, visTrans)

import(gMWT, snpStats, parallel, plotrix, Rcpp)

importFrom("stats","glm","binomial","cor","lm", "rbinom", "gaussian", "pchisq", "quantile", "sd", "var", "dbeta", "dchisq", "integrate", "qchisq","qnorm")

importFrom("SNPRelate", "snpgdsBED2GDS","snpgdsOpen", "snpgdsGRM", "snpgdsPCACorr", "snpgdsClose")
importFrom("graphics", "abline", "axis", "barplot", "lines", "par","plot", "text")

importFrom("graphics", "legend", "par", "plot", "segments", "text")

importFrom("circlize", "circos.clear", "circos.par", "circos.initialize", "circos.trackPlotRegion", "circos.text", "circos.rect", "circos.link","get.cell.meta.data")
importFrom("graphics", "axis", "boxplot", "layout", "lines", "par", "points", "rect", "text")
importFrom("stats", "density", "lm", "predict", "smooth.spline")
export(eQTL, QTL, gtfToBed, mdr, mdrEnsemble, recodeData, importSTARLog, importPED, importGTF)