export(monotoneDirection, ORCME, plotCluster, plotIsomeans, plotLambda, resampleORCME)
importFrom(Iso, pava)
importFrom("graphics", "axis", "lines", "plot", "points")
importFrom("stats", "medpolish", "sd")

export(monotoneDirection, ORCME, plotCluster, plotIsomeans, plotLambda, resampleORCME)
importFrom(Iso, pava)

import("e1071", "randomForest", "TunePareto","knitr","rmarkdown","doParallel", "igraph", "foreach")
importFrom("graphics", "abline", "axis", "mtext", "par", "plot","polygon", "rect", "strwidth", "text")

importFrom("graphics", "abline", "axis", "mtext", "par", "plot","plot.default","polygon", "rect", "strwidth", "text")

export(bog_subset, chao1, clean_shared, clean_taxonomy, combine_otus, extract_date, grab_group, make_do_matrix, make_temp_matrix, obs_richness, pielou, plot_column, reduce_names, remove_reps, rotate, shannon, year_subset, zscore)

export(bog_subset, chao1, clean_shared, clean_mothur_taxonomy, clean_TaxAss_taxonomy, combine_otus, extract_date, filter_taxa, grab_group, make_do_matrix, make_temp_matrix, obs_richness, pielou, plot_column, reduce_names, remove_reps, rotate, shannon, year_subset, zscore)

import(ape, nloptr, corpcor, lattice, grDevices, phytools, phangorn)

import(ape, nloptr, corpcor, lattice, grDevices, phytools)

import(ape, nloptr, corpcor, lattice, grDevices)

import(ape, nloptr, corpcor, lattice, grDevices, geiger)

import(ape, corpcor, nloptr, geiger, RColorBrewer)
importFrom(graphics, par, title, .filled.contour, axis, plot, points)

importFrom(stats, reorder, rnorm, median, var)

export(Oarray, as.Oarray, as.array, as.array.Oarray, is.Oarray)

export(remap, changeres, extract, transect, mapsigma, transectsigma)
export(Mplot, Msplit, Mcommon, Msummary, Mdescribe)

export(tracers3D, tracers3Drgl, movieslice3D, moviepoints3D, moviepersp3D)

importFrom("stats", "cov", "median", "model.response", "na.fail",
export(ojaMedian, ojaMedianFn, hyperplane, ojaRCM, ojaSCM, ojaSign, ojaMedianControl, ojaRank, oja1sampleTest, ojaCsampleTest,
ojaMedianEvo, ojaMedianGrid, ojaMedianEx, ojaMedianExB, ojaSignedRank)