export(add.arrow, add.color.bar, add.everywhere, add.random, add.simmap.legend, add.species.to.genus, aic.w, allFurcTrees)
export(allRotations, anc.Bayes, anc.ML, anc.trend, ancThresh, applyBranchLengths, as.multiPhylo, ave.rates, averageTree)
export(backbone.toPhylo, bd, bmPlot, bind.tip, bind.tree.simmap, biplot.phyl.pca, branching.diffusion, brownie.lite, brownieREML)
export(cladelabels, collapse.to.star, collapseTree, consensus.edges, contMap, cophylo, countSimmap, compute.mr, cospeciation)
export(ladderize.simmap, lambda.transform, likMlambda, likSurface.rateshift, locate.fossil, locate.yeti, ls.consensus, ls.tree)
export(matchLabels, matchNodes, mergeMappedStates, midpoint.root, minRotate, minSplit, minTreeDist, modified.Grafen)
export(phyl.vcv, phylo.heatmap, phylo.toBackbone, phylo.to.map, phylANOVA, phyloDesign, phylomorphospace, phylomorphospace3d, phylosig)
export(plotSimmap, plotThresh, plotTree, plotTree.barplot, plotTree.boxplot, plotTree.singletons, plotTree.splits, plotTree.wBars)
export(reroot, rerootingMethod, rescaleSimmap, resolveAllNodes, resolveNode, rotate.multi, rotateNodes, rootedge.to.singleton)
importFrom(phangorn, allTrees, Ancestors, as.phyDat, dist.hamming, midpoint, NJ, nni, optim.parsimony, parsimony, phyDat, pratchet, nnls.tree, treedist, RF.dist, KF.dist, path.dist, SPR.dist, Children, Descendants)
importFrom(stats, cophenetic, reorder, runif, setNames, optim, dexp, dnorm, rnorm, var, nlminb, biplot, pchisq, rexp, optimize, logLik, as.dist, pnorm, median, cor, aggregate, rgamma, dgamma, lm, rbinom, rgeom, pt, anova, p.adjust, screeplot, rchisq, optimHess, rmultinom, sd, dunif, dist, plogis, density)
importFrom(graphics, strwidth, par, segments, locator, lines, text, strheight, symbols, plot, layout, plot.new, title, axis, points, plot.window, polygon, rect, curve, image, mtext, arrows, barplot, boxplot, contour, hist)

export(allRotations, anc.Bayes, anc.ML, anc.trend, ancThresh, applyBranchLengths, arc.cladelabels, as.multiPhylo, ave.rates, averageTree)
export(cladelabels, coef.phyl.RMA, collapse.to.star, collapseTree, consensus.edges, contMap, cophylo, countSimmap, compute.mr, cospeciation)
export(edgelabels.cophylo, edgeProbs, errorbar.contMap, estDiversity, evol.rate.mcmc, evol.vcv, evolvcv.lite, exhaustiveMP)
export(fancyTree, fastAnc, fastBM, fastDist, fastHeight, fastMRCA, findMRCA, fitBayes, fitMk, fitDiversityModel, fitPagel, force.ultrametric)
export(gammatest, genus.to.species.tree, genSeq, get.treepos, getCladesofSize, getDescendants, getExtant, getExtinct, getnode, getSisters)
export(labelnodes, ladderize.simmap, lambda.transform, likMlambda, likSurface.rateshift, locate.fossil, locate.yeti, ls.consensus, ls.tree)
export(mrp.supertree, multi.mantel, multiC, multiOU, multiRF)
export(paintBranches, paintSubTree, paste.tree, pbtree, pgls.Ives, pgls.SEy, phenogram, phyl.cca, phyl.pairedttest, phyl.pca, phyl.resid, phyl.RMA)
export(plotBranchbyTrait, plot.contMap, plot.cophylo, plot.densityMap, plot.fitMk, plot.fitPagel, plot.phyl.RMA, plot.phylo.to.map, plot.gfit)
export(plotSimmap, plotThresh, plotTree, plotTree.barplot, plotTree.boxplot, plotTree.errorbars, plotTree.singletons, plotTree.splits)
export(ratebystate, ratebytree, rateshift, read.newick, read.simmap, reorder.backbonePhylo, reorderSimmap, rep.multiPhylo, rep.phylo)
export(repPhylo, reroot, rerootingMethod, rescaleSimmap, resolveAllNodes, resolveNode, rotate.multi, rotateNodes, rootedge.to.singleton)
importFrom(ape, consensus, compute.brlen, cophenetic.phylo, corBrownian, di2multi, dist.dna, dist.nodes, drop.tip, edgelabels, extract.clade)
importFrom(phangorn, allTrees, Ancestors, as.phyDat, dist.hamming, midpoint, NJ, nni, nnls.tree, optim.parsimony, parsimony, phyDat, pratchet, treedist, RF.dist, KF.dist, path.dist, SPR.dist, Children, Descendants)
importFrom(plotrix, arctext, draw.arc, draw.circle, draw.ellipse, textbox)
importFrom(stats, cophenetic, reorder, runif, setNames, optim, dexp, dnorm, rnorm, var, nlminb, biplot, pchisq, rexp, optimize, logLik, as.dist, pnorm, median, cor, aggregate, rgamma, dgamma, lm, rbinom, rgeom, pt, anova, p.adjust, screeplot, rchisq, optimHess, rmultinom, sd, dunif, dist, plogis, density, coef)
importFrom(graphics, strwidth, par, segments, locator, lines, text, strheight, symbols, plot, layout, plot.new, title, axis, points, plot.window, polygon, rect, curve, image, mtext, arrows, barplot, boxplot, contour, hist, abline, legend)