importFrom(coda, "as.mcmc", "mcmc", "as.mcmc.list", "traceplot")

importFrom(graphics, "axis", "lines", "matplot", "par", "plot", "title")
importFrom(stats, "lowess", "quantile", "runif", "sd", "time", "update", "var")
importFrom(coda, "as.mcmc", "mcmc", "nvar", "varnames", "nchain", "as.mcmc.list", "traceplot")

# Generated by roxygen2: do not edit by hand
export(R62S3)

importFrom(Biostrings, consensusString, consensusMatrix, DNAStringSet, IUPAC_CODE_MAP)
importFrom(ape, read.tree, write.tree, unroot, all.equal.phylo, c.phylo, c.multiPhylo, rtree, drop.tip)
importFrom(graphics, layout, lines, matplot, plot, points, segments, text, hist)

useDynLib(RAHRS, .registration = TRUE, .fixes = "C_")

importFrom("grDevices", "dev.cur", "dev.new", "dev.next", "dev.off",
importFrom("graphics", "axis", "boxplot", "legend", "lines", "par",
"plot", "points", "segments", "text", "title")
importFrom("stats", "cor", "deviance", "dist", "dnorm", "median",
"model.matrix", "nlminb", "optim", "optimize", "pbeta",
"pchisq", "ppoints", "predict", "qchisq", "quantile",

importFrom("stats", "as.dist", "chisq.test", "cutree", "hclust", "kmeans")

importFrom("ape", "nj", "dist.nodes", "plot.phylo", "nodelabels", "tiplabels")
importFrom("ggtree", "ggtree", "aes", "nodepie", "geom_inset")
importFrom("phylobase", "phylo4", "phylo4d", "nodeId", "nodeData", "nNodes")

importFrom("ggplot2", "ggtitle", "ggplot", "aes", "scale_fill_manual",
"coord_equal", "xlab", "ylab", "geom_segment", ".data")

importFrom(grid, unit, unit.pmax, arrow, grid.newpage, grid.draw)
importFrom(RgoogleMaps, PlotOnStaticMap, GetMap.bbox, qbbox, MaxZoom)

importFrom("grid", "unit", "unit.pmax", "arrow", "grid.newpage", "grid.draw", "textGrob", "grid.text", "grobTree", "rectGrob", "gpar")
importFrom("gridExtra", "grid.arrange", "arrangeGrob", "tableGrob", "ttheme_default")
importFrom("RgoogleMaps", "PlotOnStaticMap", "GetMap.bbox", "qbbox", "MaxZoom")
importFrom("grDevices", "colorRampPalette", "dev.off", "grey.colors", "pdf", "rainbow")
importFrom("graphics", "axis", "barplot", "boxplot", "layout", "legend", "par", "plot", "plot.new", "text", "title")
importFrom("stats", "aggregate", "anova", "as.dendrogram", "as.formula", "cmdscale", "complete.cases", "cophenetic", "cor", "cutree", "dendrapply", "hclust", "is.leaf", "median", "na.exclude", "na.omit", "predict", "runif", "update")