Dependency analysis on package AnnotationFilter

General information

Bioconductor link link
Package version1.20.0
Number of strong dependencies17
Number of all dependencies89
Number of parent packages4
Max heaviness from parent packages14
Total heaviness from parent packages15
Number of parent packages (including Suggests and Enhances)10
Max co-heaviness from parent packages ("GenomicRanges" and "utils")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of AnnotationFilter and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on AnnotationFilter.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods utils stats tools graphics stats4 grDevices BiocGenerics S4Vectors IRanges GenomeInfoDb XVector RCurl GenomeInfoDbData zlibbioc bitops glue rlang evaluate magrittr fastmap jsonlite R6 yaml xfun highr stringr stringi cli pkgconfig vctrs digest bit64 blob DBI memoise Rcpp plogr bit cachem knitr htmltools jquerylib tinytex bslib base64enc sass fs rappdirs crayon bookdown rmarkdown BiocManager brio callr desc ellipsis lifecycle pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj fansi rematch2 tibble pillar utf8 AnnotationDbi Biobase RSQLite KEGGREST httr png Biostrings curl mime openssl askpass sys 0 2 4 6 Imported methods 0 20 40 Required packages 0 10 20 30 Heaviness from parents utils methods lazyeval GenomicRanges knitr RSQLite rmarkdown BiocStyle testthat org.Hs.eg.db In total 17 packages are required directly or indirectly (89) when installing 'AnnotationFilter' (1.20.0) Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'AnnotationFilter' Imported functions Imported S4 classes


Dependency table

"Import" information is from the NAMESPACE file of AnnotationFilter.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on AnnotationFilter: number of required packages that can be reduced if moving parent package to Suggests of AnnotationFilter.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on AnnotationFilter
GenomicRanges Imports 2 0 1 15 14
lazyeval Imports 1 0 0 0 1
utils Imports 2 0 0 0 0
methods Imports 6 0 0 0 0
testthat Suggests No object is imported into the namespace of AnnotationFilter. 36 32
org.Hs.eg.db Suggests No object is imported into the namespace of AnnotationFilter. 45 31
BiocStyle Suggests No object is imported into the namespace of AnnotationFilter. 30 27
rmarkdown Suggests No object is imported into the namespace of AnnotationFilter. 27 24
RSQLite Suggests No object is imported into the namespace of AnnotationFilter. 17 15
knitr Suggests No object is imported into the namespace of AnnotationFilter. 12 9

Analysis was done with pkgndep.