Dependency analysis on package a4Preproc

General information

Bioconductor link link
Package version1.44.0
Number of strong dependencies6
Number of all dependencies66
Number of parent packages2
Max heaviness from parent packages1
Total heaviness from parent packages1
Number of parent packages (including Suggests and Enhances)6
Max co-heaviness from parent packages ("Biobase" and "BiocGenerics")5

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of a4Preproc and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on a4Preproc.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods utils stats graphics tools grDevices stats4 BiocGenerics glue Biobase evaluate highr stringr yaml xfun magrittr stringi rlang jsonlite R6 fastmap bslib htmltools jquerylib knitr tinytex sass digest base64enc fs rappdirs AnnotationDbi org.Hs.eg.db IRanges DBI RSQLite S4Vectors KEGGREST bit64 blob memoise pkgconfig Rcpp plogr httr png Biostrings bit vctrs cachem curl mime openssl XVector GenomeInfoDb crayon cli askpass zlibbioc RCurl GenomeInfoDbData sys bitops 0 2 4 6 Imported methods 0 20 40 Required packages 0 20 40 Heaviness from parents BiocGenerics Biobase ALL knitr rmarkdown hgu95av2.db In total 6 packages are required directly or indirectly (66) when installing 'a4Preproc' (1.44.0) Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'a4Preproc' Imported functions


Dependency table

"Import" information is from the NAMESPACE file of a4Preproc.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on a4Preproc: number of required packages that can be reduced if moving parent package to Suggests of a4Preproc.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on a4Preproc
Biobase Imports 7 0 0 5 1
BiocGenerics Imports 2 0 0 4 0
hgu95av2.db Suggests No object is imported into the namespace of a4Preproc. 46 41
rmarkdown Suggests No object is imported into the namespace of a4Preproc. 27 25
knitr Suggests No object is imported into the namespace of a4Preproc. 12 10
ALL Suggests No object is imported into the namespace of a4Preproc. 6 1

Analysis was done with pkgndep.