Dependency analysis on package affydata

General information

Bioconductor link link
Package version1.44.0
Number of strong dependencies12
Number of all dependencies51
Number of parent packages2
Max heaviness from parent packages11
Total heaviness from parent packages11
Number of parent packages (including Suggests and Enhances)4
Max co-heaviness from parent packages ("methods" and "affy")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of affydata and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on affydata.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests graphics grDevices methods stats utils stats4 tools BiocGenerics Biobase zlibbioc affyio BiocManager preprocessCore AnnotationDbi IRanges DBI RSQLite S4Vectors KEGGREST bit64 blob memoise pkgconfig Rcpp plogr httr png Biostrings bit rlang vctrs cachem curl jsonlite mime openssl R6 XVector GenomeInfoDb crayon cli glue fastmap askpass RCurl GenomeInfoDbData sys bitops 0 0.5 1 Imported methods 0 20 40 Required packages 0 10 20 30 Heaviness from parents affy methods hgu95av2cdf hgu133acdf In total 12 packages are required directly or indirectly (51) when installing 'affydata' (1.44.0) Depends Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'affydata' The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of affydata.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on affydata: number of required packages that can be reduced if moving parent package to Suggests of affydata.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on affydata
affy Depends Parent package is listed in Depends of affydata but no object from parent package is imported. 11 11
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of affydata. 0 0
hgu95av2cdf Suggests No object is imported into the namespace of affydata. 45 38
hgu133acdf Suggests No object is imported into the namespace of affydata. 45 38

Analysis was done with pkgndep.