Dependency analysis on package ashr

General information

CRAN link link
Package version2.2-54
Number of strong dependencies16
Number of all dependencies79
Number of parent packages9
Max heaviness from parent packages3
Total heaviness from parent packages7
Number of parent packages (including Suggests and Enhances)14
Max co-heaviness from parent packages ("mixsqp" and "Matrix")4

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of ashr and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on ashr.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods utils stats grDevices graphics grid tools splines lattice Matrix irlba Rcpp RcppArmadillo magrittr glue evaluate digest R6 rlang highr stringr yaml xfun stringi jsonlite cli crayon ellipsis lifecycle withr fansi tibble pillar pkgconfig vctrs utf8 bslib htmltools jquerylib knitr tinytex sass base64enc fastmap fs rappdirs brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 gtable isoband MASS mgcv scales nlme farver labeling munsell RColorBrewer viridisLite colorspace 0 2 4 6 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents stats graphics truncnorm SQUAREM etrunct invgamma Rcpp Matrix mixsqp REBayes knitr rmarkdown testthat ggplot2 In total 16 packages are required directly or indirectly (79) when installing 'ashr' (2.2-54) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'ashr' Imported functions The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of ashr.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on ashr: number of required packages that can be reduced if moving parent package to Suggests of ashr.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on ashr
mixsqp Imports 1 0 0 11 3
truncnorm Imports 1 0 0 0 1
SQUAREM Imports The whole set of functions/methods/classes from parent package is imported to the namespace of ashr. 0 1
etrunct Imports Parent package is listed in Imports of ashr but no object from parent package is imported. 0 1
invgamma Imports 2 0 0 0 1
stats Imports 7 0 0 0 0
graphics Imports 3 0 0 0 0
Rcpp Imports The whole set of functions/methods/classes from parent package is imported to the namespace of ashr. 2 0
Matrix Imports The whole set of functions/methods/classes from parent package is imported to the namespace of ashr. 7 0
testthat Suggests No object is imported into the namespace of ashr. 36 32
ggplot2 Suggests No object is imported into the namespace of ashr. 37 30
rmarkdown Suggests No object is imported into the namespace of ashr. 27 24
knitr Suggests No object is imported into the namespace of ashr. 12 10
REBayes Suggests No object is imported into the namespace of ashr. 8 1

Analysis was done with pkgndep.