Dependency analysis on package BSgenome.Hsapiens.UCSC.hg18

General information

Bioconductor link link
Package version1.3.1000
Number of strong dependencies46
Number of all dependencies99
Number of parent packages1
Max heaviness from parent packages46
Total heaviness from parent packages46
Number of parent packages (including Suggests and Enhances)2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of BSgenome.Hsapiens.UCSC.hg18 and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on BSgenome.Hsapiens.UCSC.hg18.

Adjust heatmap size:
Base packages Other packages Depends Suggests methods utils stats graphics stats4 grDevices tools parallel grid BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges Biostrings rtracklayer matrixStats XVector Rsamtools RCurl GenomeInfoDbData crayon XML zlibbioc GenomicAlignments BiocIO restfulr bitops BiocParallel Rhtslib SummarizedExperiment rjson yaml futile.logger snow codetools BH MatrixGenerics Biobase Matrix DelayedArray lambda.r futile.options lattice formatR GenomicFeatures AnnotationDbi DBI RSQLite biomaRt KEGGREST bit64 blob memoise pkgconfig Rcpp plogr progress stringr httr digest BiocFileCache rappdirs xml2 png bit rlang vctrs cachem hms prettyunits R6 glue magrittr stringi curl jsonlite mime openssl dbplyr dplyr filelock cli fastmap ellipsis lifecycle askpass assertthat pillar purrr tibble tidyselect withr generics sys fansi utf8 0 0.5 1 Imported methods 0 50 100 Required packages 0 20 40 Heaviness from parents BSgenome TxDb.Hsapiens.UCSC.hg18.knownGene In total 46 packages are required directly or indirectly (99) when installing 'BSgenome.Hsapiens.UCSC.hg18' (1.3.1000) Depends Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'BSgenome.Hsapiens.UCSC.hg18' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of BSgenome.Hsapiens.UCSC.hg18.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on BSgenome.Hsapiens.UCSC.hg18: number of required packages that can be reduced if moving parent package to Suggests of BSgenome.Hsapiens.UCSC.hg18.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on BSgenome.Hsapiens.UCSC.hg18
BSgenome Depends The whole set of functions/methods/classes from parent package is imported to the namespace of BSgenome.Hsapiens.UCSC.hg18. 45 46
TxDb.Hsapiens.UCSC.hg18.knownGene Suggests No object is imported into the namespace of BSgenome.Hsapiens.UCSC.hg18. 97 53

Analysis was done with pkgndep.