Dependency analysis on package BSgenome.Hsapiens.UCSC.hg38

General information

Bioconductor link link
Package version1.4.4
Number of strong dependencies46
Number of all dependencies46
Number of parent packages1
Max heaviness from parent packages46
Total heaviness from parent packages46
Number of parent packages (including Suggests and Enhances)1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of BSgenome.Hsapiens.UCSC.hg38 and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on BSgenome.Hsapiens.UCSC.hg38.

Adjust heatmap size:
Base packages Other packages Depends methods utils stats graphics stats4 grDevices tools parallel grid BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges Biostrings rtracklayer matrixStats XVector Rsamtools RCurl GenomeInfoDbData crayon XML zlibbioc GenomicAlignments BiocIO restfulr bitops BiocParallel Rhtslib SummarizedExperiment rjson yaml futile.logger snow codetools BH MatrixGenerics Biobase Matrix DelayedArray lambda.r futile.options lattice formatR 0 0.5 1 Imported methods 0 20 40 Required packages 0 20 40 Heaviness from parents BSgenome In total 46 packages are required directly or indirectly (46) when installing 'BSgenome.Hsapiens.UCSC.hg38' (1.4.4) Depends Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'BSgenome.Hsapiens.UCSC.hg38' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of BSgenome.Hsapiens.UCSC.hg38.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on BSgenome.Hsapiens.UCSC.hg38: number of required packages that can be reduced if moving parent package to Suggests of BSgenome.Hsapiens.UCSC.hg38.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on BSgenome.Hsapiens.UCSC.hg38
BSgenome Depends The whole set of functions/methods/classes from parent package is imported to the namespace of BSgenome.Hsapiens.UCSC.hg38. 45 46

Analysis was done with pkgndep.