Dependency analysis on package BiocIO

General information

Bioconductor link link
Package version1.6.0
Number of strong dependencies8
Number of all dependencies59
Number of parent packages4
Max heaviness from parent packages2
Total heaviness from parent packages3
Number of parent packages (including Suggests and Enhances)8
Max co-heaviness from parent packages ("S4Vectors" and "BiocGenerics")4

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of BiocIO and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on BiocIO.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods utils stats graphics stats4 tools grDevices BiocGenerics evaluate magrittr glue highr stringr yaml xfun stringi digest jsonlite R6 rlang bslib htmltools jquerylib knitr tinytex sass base64enc fastmap fs rappdirs bookdown rmarkdown BiocManager brio callr cli crayon desc ellipsis lifecycle pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 2 4 6 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents methods tools BiocGenerics S4Vectors knitr rmarkdown BiocStyle testthat In total 8 packages are required directly or indirectly (59) when installing 'BiocIO' (1.6.0) Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'BiocIO' Imported functions


Dependency table

"Import" information is from the NAMESPACE file of BiocIO.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on BiocIO: number of required packages that can be reduced if moving parent package to Suggests of BiocIO.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on BiocIO
S4Vectors Imports 2 0 0 6 2
tools Imports 3 0 0 0 1
methods Imports 7 0 0 0 0
BiocGenerics Imports 1 0 0 4 0
testthat Suggests No object is imported into the namespace of BiocIO. 36 32
BiocStyle Suggests No object is imported into the namespace of BiocIO. 30 27
rmarkdown Suggests No object is imported into the namespace of BiocIO. 27 24
knitr Suggests No object is imported into the namespace of BiocIO. 12 9

Analysis was done with pkgndep.