Dependency analysis on package BiocNeighbors

General information

Bioconductor link link
Package version1.14.0
Number of strong dependencies22
Number of all dependencies75
Number of parent packages7
Max heaviness from parent packages9
Total heaviness from parent packages17
Number of parent packages (including Suggests and Enhances)13
Max co-heaviness from parent packages ("RcppHNSW" and "Rcpp")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of BiocNeighbors and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on BiocNeighbors.

Adjust heatmap size:
Base packages Other packages Imports LinkingTo Suggests methods utils stats grDevices graphics stats4 grid parallel tools Rcpp BiocGenerics lattice futile.logger snow codetools BH lambda.r futile.options formatR evaluate magrittr glue yaml xfun highr stringr stringi digest jsonlite R6 rlang knitr htmltools jquerylib tinytex bslib base64enc fastmap sass fs rappdirs bookdown rmarkdown BiocManager brio callr cli crayon desc ellipsis lifecycle pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 1 2 3 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents stats methods Rcpp S4Vectors Matrix BiocParallel RcppHNSW FNN RcppAnnoy knitr rmarkdown BiocStyle testthat In total 22 packages are required directly or indirectly (75) when installing 'BiocNeighbors' (1.14.0) Imports LinkingTo Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'BiocNeighbors' Imported functions Imported S4 classes Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of BiocNeighbors.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on BiocNeighbors: number of required packages that can be reduced if moving parent package to Suggests of BiocNeighbors.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on BiocNeighbors
BiocParallel Imports 3 0 0 11 9
Matrix Imports 1 0 0 7 4
S4Vectors Imports 1 0 1 6 3
stats Imports 1 0 0 0 0
methods Imports 3 0 0 0 0
Rcpp Imports 1 0 0 2 0
RcppHNSW LinkingTo Parent package is listed in LinkingTo of BiocNeighbors but no object from parent package is imported. 3 1
testthat Suggests No object is imported into the namespace of BiocNeighbors. 36 32
BiocStyle Suggests No object is imported into the namespace of BiocNeighbors. 30 27
rmarkdown Suggests No object is imported into the namespace of BiocNeighbors. 27 24
knitr Suggests No object is imported into the namespace of BiocNeighbors. 12 10
FNN Suggests No object is imported into the namespace of BiocNeighbors. 0 1
RcppAnnoy Suggests No object is imported into the namespace of BiocNeighbors. 3 1

Analysis was done with pkgndep.