Dependency analysis on package beadarrayExampleData

General information

Bioconductor link link
Package version1.34.0
Number of strong dependencies82
Number of all dependencies82
Number of parent packages3
Max heaviness from parent packages76
Total heaviness from parent packages76
Number of parent packages (including Suggests and Enhances)3
Max co-heaviness from parent packages ("beadarray" and "Biobase")5

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of beadarrayExampleData and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on beadarrayExampleData.

Adjust heatmap size:
Base packages Other packages Depends utils methods graphics stats stats4 grid grDevices tools splines BiocGenerics Biobase hexbin BeadDataPackR limma AnnotationDbi reshape2 GenomicRanges IRanges illuminaio ggplot2 lattice DBI RSQLite S4Vectors KEGGREST plyr Rcpp stringr GenomeInfoDb XVector base64 digest glue gtable isoband MASS mgcv rlang scales tibble withr bit64 blob memoise pkgconfig plogr httr png Biostrings magrittr stringi RCurl GenomeInfoDbData zlibbioc openssl nlme Matrix farver labeling lifecycle munsell R6 RColorBrewer viridisLite ellipsis fansi pillar vctrs bit cachem curl jsonlite mime crayon bitops askpass colorspace cli utf8 fastmap sys 0 0.5 1 Imported methods 0 20 40 60 80 Required packages 0 20 40 60 Heaviness from parents methods Biobase beadarray In total 82 packages are required directly or indirectly (82) when installing 'beadarrayExampleData' (1.34.0) Depends Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'beadarrayExampleData' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of beadarrayExampleData.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on beadarrayExampleData: number of required packages that can be reduced if moving parent package to Suggests of beadarrayExampleData.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on beadarrayExampleData
beadarray Depends The whole set of functions/methods/classes from parent package is imported to the namespace of beadarrayExampleData. 81 76
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of beadarrayExampleData. 0 0
Biobase Depends The whole set of functions/methods/classes from parent package is imported to the namespace of beadarrayExampleData. 5 0

Analysis was done with pkgndep.