Dependency analysis on package biocthis

General information

Bioconductor link link
Package version1.6.0
Number of strong dependencies52
Number of all dependencies105
Number of parent packages6
Max heaviness from parent packages21
Total heaviness from parent packages36
Number of parent packages (including Suggests and Enhances)16
Max co-heaviness from parent packages ("usethis" and "styler")11

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of biocthis and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on biocthis.

Adjust heatmap size:
Base packages Other packages Imports Suggests utils methods tools stats grDevices graphics glue magrittr jsonlite R6 rlang digest yaml cli withr crayon rprojroot lifecycle curl fs rappdirs askpass openssl sys httr mime purrr tibble ellipsis fansi pillar pkgconfig vctrs utf8 desc rematch2 rstudioapi whisker clipr gert gh credentials zip gitcreds ini R.cache R.methodsS3 R.oo R.utils evaluate stringr stringi xfun highr knitr fastmap xml2 cpp11 htmltools jquerylib tinytex bslib base64enc sass callr processx brio ps rmarkdown pkgload praise waldo diffobj memoise cachem rex lazyeval plyr lubridate Rcpp generics bookdown BiocManager downlit ragg systemfonts textshaping usethis pkgbuild rcmdcheck remotes roxygen2 rversions sessioninfo testthat prettyunits xopen brew commonmark 0 1 2 Imported methods 0 20 40 60 Required packages 0 10 20 30 Heaviness from parents BiocManager fs glue rlang styler usethis utils sessioninfo knitr covr RefManageR rmarkdown BiocStyle testthat pkgdown devtools In total 52 packages are required directly or indirectly (105) when installing 'biocthis' (1.6.0) Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'biocthis' Imported functions The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of biocthis.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on biocthis: number of required packages that can be reduced if moving parent package to Suggests of biocthis.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on biocthis
usethis Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biocthis. 36 21
styler Imports 1 0 0 28 14
BiocManager Imports Parent package is listed in Imports of biocthis but no object from parent package is imported. 1 1
fs Imports 2 0 0 1 0
glue Imports 1 0 0 1 0
rlang Imports 2 0 0 1 0
devtools Suggests No object is imported into the namespace of biocthis. 76 31
pkgdown Suggests No object is imported into the namespace of biocthis. 62 27
BiocStyle Suggests No object is imported into the namespace of biocthis. 30 16
rmarkdown Suggests No object is imported into the namespace of biocthis. 27 14
testthat Suggests No object is imported into the namespace of biocthis. 36 10
RefManageR Suggests No object is imported into the namespace of biocthis. 22 9
knitr Suggests No object is imported into the namespace of biocthis. 12 6
covr Suggests No object is imported into the namespace of biocthis. 20 3
sessioninfo Suggests No object is imported into the namespace of biocthis. 5 1
utils Suggests No object is imported into the namespace of biocthis. 0 0

The following table lists pairs of parent packages with co-heaviness larger than 10. The co-heaviness measures the number of additional dependencies that two parent packages simultaneously import and are only imported by the two parents.

Note the co-heaviness from parents can be always easily observed in the dependency heatmap.

Parent 1 Parent 2 Co-heaviness on biocthis Co-heaviness as Jaccard coeffcient
styler usethis 11 0.239

Analysis was done with pkgndep.