Dependency analysis on package ChemmineOB

General information

Bioconductor link link
Package version1.34.0
Number of strong dependencies8
Number of all dependencies81
Number of parent packages5
Max heaviness from parent packages3
Total heaviness from parent packages6
Number of parent packages (including Suggests and Enhances)11
Max co-heaviness from parent packages ("BiocGenerics" and "Rcpp")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of ChemmineOB and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on ChemmineOB.

Adjust heatmap size:
Base packages Other packages Depends Imports LinkingTo Suggests utils methods stats graphics tools grDevices grid splines stringi glue magrittr yaml xfun evaluate highr stringr digest base64enc jsonlite rlang htmltools jquerylib R6 fastmap knitr tinytex bslib sass fs rappdirs rmarkdown bookdown BiocManager markdown mime rjson RCurl DBI BiocGenerics Rcpp ggplot2 gridExtra png DT rsvg BH bitops gtable isoband MASS mgcv scales tibble withr htmlwidgets crosstalk promises nlme Matrix farver labeling lifecycle munsell RColorBrewer viridisLite ellipsis fansi pillar pkgconfig vctrs lazyeval later lattice colorspace cli crayon utf8 0 0.5 1 Imported methods 0 20 40 60 Required packages 0 20 40 Heaviness from parents methods zlibbioc Rcpp BiocGenerics BH BiocManager knitr rmarkdown BiocStyle knitrBootstrap ChemmineR In total 8 packages are required directly or indirectly (81) when installing 'ChemmineOB' (1.34.0) Depends Imports LinkingTo Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'ChemmineOB' The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of ChemmineOB.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on ChemmineOB: number of required packages that can be reduced if moving parent package to Suggests of ChemmineOB.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on ChemmineOB
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of ChemmineOB. 0 0
BiocGenerics Imports Parent package is listed in Imports of ChemmineOB but no object from parent package is imported. 4 3
zlibbioc Imports The whole set of functions/methods/classes from parent package is imported to the namespace of ChemmineOB. 0 1
Rcpp Imports Parent package is listed in Imports of ChemmineOB but no object from parent package is imported. 2 1
BH LinkingTo Parent package is listed in LinkingTo of ChemmineOB but no object from parent package is imported. 0 1
ChemmineR Suggests No object is imported into the namespace of ChemmineOB. 62 56
BiocStyle Suggests No object is imported into the namespace of ChemmineOB. 30 28
knitrBootstrap Suggests No object is imported into the namespace of ChemmineOB. 30 28
rmarkdown Suggests No object is imported into the namespace of ChemmineOB. 27 25
knitr Suggests No object is imported into the namespace of ChemmineOB. 12 10
BiocManager Suggests No object is imported into the namespace of ChemmineOB. 1 1

Analysis was done with pkgndep.