Dependency analysis on package ConsensusClusterPlus

General information

Bioconductor link link
Package version1.60.0
Number of strong dependencies9
Number of all dependencies9
Number of parent packages6
Max heaviness from parent packages2
Total heaviness from parent packages3
Number of parent packages (including Suggests and Enhances)6
Max co-heaviness from parent packages ("ALL" and "Biobase")3

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of ConsensusClusterPlus and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on ConsensusClusterPlus.

Adjust heatmap size:
Base packages Other packages Imports utils graphics stats methods grDevices BiocGenerics Biobase 0 2 4 6 8 Imported methods 0 2 4 6 Required packages 0 1 2 Heaviness from parents graphics stats utils cluster Biobase ALL In total 9 packages are required directly or indirectly (9) when installing 'ConsensusClusterPlus' (1.60.0) Imports Base packages that are required Contributed packages that are required Packages that are required for installing 'ConsensusClusterPlus' Imported functions Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of ConsensusClusterPlus.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on ConsensusClusterPlus: number of required packages that can be reduced if moving parent package to Suggests of ConsensusClusterPlus.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on ConsensusClusterPlus
cluster Imports 2 0 0 4 2
ALL Imports Parent package is listed in Imports of ConsensusClusterPlus but no object from parent package is imported. 6 1
graphics Imports 9 0 0 0 0
stats Imports 8 0 0 0 0
utils Imports 2 0 0 0 0
Biobase Imports 1 0 0 5 0

Analysis was done with pkgndep.