Dependency analysis on package DO.db

General information

Bioconductor link link
Package version2.9
Number of strong dependencies45
Number of all dependencies45
Number of parent packages2
Max heaviness from parent packages44
Total heaviness from parent packages44
Number of parent packages (including Suggests and Enhances)2
Max co-heaviness from parent packages ("AnnotationDbi" and "methods")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of DO.db and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on DO.db.

Adjust heatmap size:
Base packages Other packages Depends methods utils stats4 stats graphics grDevices tools BiocGenerics Biobase IRanges DBI RSQLite S4Vectors KEGGREST bit64 blob memoise pkgconfig Rcpp plogr httr png Biostrings bit rlang vctrs cachem curl jsonlite mime openssl R6 XVector GenomeInfoDb crayon cli glue fastmap askpass zlibbioc RCurl GenomeInfoDbData sys bitops 0 0.5 1 Imported methods 0 20 40 Required packages 0 20 40 Heaviness from parents methods AnnotationDbi In total 45 packages are required directly or indirectly (45) when installing 'DO.db' (2.9) Depends Base packages that are required Contributed packages that are required Packages that are required for installing 'DO.db' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of DO.db.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on DO.db: number of required packages that can be reduced if moving parent package to Suggests of DO.db.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on DO.db
AnnotationDbi Depends The whole set of functions/methods/classes from parent package is imported to the namespace of DO.db. 44 44
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of DO.db. 0 0

Analysis was done with pkgndep.