Dependency analysis on package fmcsR

General information

Bioconductor link link
Package version1.38.0
Number of strong dependencies65
Number of all dependencies94
Number of parent packages5
Max heaviness from parent packages58
Total heaviness from parent packages60
Number of parent packages (including Suggests and Enhances)10
Max co-heaviness from parent packages ("BiocGenerics" and "ChemmineR")2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of fmcsR and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on fmcsR.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils stats tools grDevices graphics grid splines stringi glue magrittr digest jsonlite R6 yaml base64enc rlang htmltools jquerylib fastmap Rcpp rjson RCurl DBI BiocGenerics ggplot2 gridExtra png DT rsvg BH bitops gtable isoband MASS mgcv scales tibble withr htmlwidgets crosstalk promises nlme Matrix farver labeling lifecycle munsell RColorBrewer viridisLite ellipsis fansi pillar pkgconfig vctrs lazyeval later lattice colorspace cli crayon utf8 stringr xfun evaluate highr knitr tinytex bslib sass fs rappdirs mime rmarkdown RefManageR httr xml2 plyr lubridate curl openssl generics cpp11 askpass sys bookdown BiocManager markdown 0 0.5 1 Imported methods 0 20 40 60 Required packages 0 20 40 60 Heaviness from parents methods ChemmineR parallel RUnit BiocGenerics knitr knitcitations rmarkdown BiocStyle knitrBootstrap In total 65 packages are required directly or indirectly (94) when installing 'fmcsR' (1.38.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'fmcsR' The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of fmcsR.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on fmcsR: number of required packages that can be reduced if moving parent package to Suggests of fmcsR.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on fmcsR
ChemmineR Depends The whole set of functions/methods/classes from parent package is imported to the namespace of fmcsR. 62 58
methods Depends Parent package is listed in Depends of fmcsR but no object from parent package is imported. 0 0
parallel Imports The whole set of functions/methods/classes from parent package is imported to the namespace of fmcsR. 0 1
RUnit Imports Parent package is listed in Imports of fmcsR but no object from parent package is imported. 3 1
BiocGenerics Imports Parent package is listed in Imports of fmcsR but no object from parent package is imported. 4 0
knitcitations Suggests No object is imported into the namespace of fmcsR. 24 14
BiocStyle Suggests No object is imported into the namespace of fmcsR. 30 14
knitrBootstrap Suggests No object is imported into the namespace of fmcsR. 30 14
rmarkdown Suggests No object is imported into the namespace of fmcsR. 27 11
knitr Suggests No object is imported into the namespace of fmcsR. 12 5

Analysis was done with pkgndep.