Dependency analysis on package GEOquery

General information

Bioconductor link link
Package version2.64.2
Number of strong dependencies45
Number of all dependencies86
Number of parent packages11
Max heaviness from parent packages10
Total heaviness from parent packages21
Number of parent packages (including Suggests and Enhances)17
Max co-heaviness from parent packages ("tidyr" and "dplyr")2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of GEOquery and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on GEOquery.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils stats grDevices graphics tools R6 glue magrittr crayon rlang cli lifecycle tibble ellipsis pkgconfig vctrs fansi pillar utf8 tidyselect purrr withr generics cpp11 BiocGenerics R.oo R.methodsS3 dplyr clipr hms vroom tzdb bit64 progress bit prettyunits xfun evaluate yaml jsonlite digest mime highr stringr stringi rex httr lazyeval curl openssl askpass sys bslib htmltools jquerylib knitr tinytex sass base64enc fastmap fs rappdirs brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 0 2 4 Imported methods 0 10 20 30 Required packages 0 5 10 15 Heaviness from parents methods Biobase magrittr curl xml2 data.table limma R.utils dplyr tidyr readr BiocGenerics markdown knitr covr rmarkdown testthat In total 45 packages are required directly or indirectly (86) when installing 'GEOquery' (2.64.2) Depends Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'GEOquery' Imported functions Imported S4 classes Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of GEOquery.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on GEOquery: number of required packages that can be reduced if moving parent package to Suggests of GEOquery.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on GEOquery
Biobase Depends 0 0 1 5 2
methods Depends Parent package is listed in Depends of GEOquery but no object from parent package is imported. 0 0
readr Imports 3 0 0 31 10
R.utils Imports Parent package is listed in Imports of GEOquery but no object from parent package is imported. 5 4
curl Imports Parent package is listed in Imports of GEOquery but no object from parent package is imported. 0 1
xml2 Imports 4 0 0 1 1
data.table Imports 1 0 0 1 1
limma Imports 0 0 1 5 1
tidyr Imports 3 0 0 22 1
magrittr Imports 1 0 0 0 0
dplyr Imports 4 0 0 20 0
rmarkdown Suggests No object is imported into the namespace of GEOquery. 27 19
testthat Suggests No object is imported into the namespace of GEOquery. 36 16
covr Suggests No object is imported into the namespace of GEOquery. 20 11
knitr Suggests No object is imported into the namespace of GEOquery. 12 7
markdown Suggests No object is imported into the namespace of GEOquery. 5 3
BiocGenerics Suggests No object is imported into the namespace of GEOquery. 4 0

Analysis was done with pkgndep.