Dependency analysis on package grasp2db

General information

Bioconductor link link
Package version1.1.0
Number of strong dependencies86
Number of all dependencies143
Number of parent packages9
Max heaviness from parent packages40
Total heaviness from parent packages40
Number of parent packages (including Suggests and Enhances)12
Max co-heaviness from parent packages ("AnnotationHub" and "RSQLite")8

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of grasp2db and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on grasp2db.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests Enhances utils methods stats grDevices tools graphics stats4 grid parallel splines glue pkgconfig rlang vctrs cli magrittr blob DBI generics lifecycle R6 tibble tidyselect pillar ellipsis fansi purrr crayon utf8 bit64 memoise Rcpp plogr bit cachem fastmap assertthat dplyr withr BiocGenerics S4Vectors IRanges RCurl GenomeInfoDbData bitops yaml BiocFileCache RSQLite BiocManager BiocVersion curl rappdirs AnnotationDbi interactiveDisplayBase httr dbplyr filelock Biobase KEGGREST shiny DT jsonlite mime openssl png Biostrings httpuv xtable fontawesome htmltools sourcetools later promises commonmark bslib htmlwidgets crosstalk jquerylib askpass XVector GenomeInfoDb digest base64enc sass lazyeval sys zlibbioc fs stringr stringi evaluate highr xfun GenomicRanges GenomicFeatures AnnotationHub BiocIO rtracklayer biomaRt hms Matrix MatrixGenerics SummarizedExperiment Rsamtools Rhtslib XML GenomicAlignments restfulr progress xml2 lattice matrixStats DelayedArray BiocParallel rjson prettyunits futile.logger snow codetools BH lambda.r futile.options formatR readr snpStats VariantAnnotation clipr vroom cpp11 tzdb survival BSgenome biocViews BiocCheck graph OrganismDbi AnnotationForge RBGL RUnit stringdist knitr 0 2 4 6 8 Imported methods 0 50 100 Required packages 0 20 40 Heaviness from parents RSQLite dplyr dbplyr methods utils stats digest GenomeInfoDb AnnotationHub knitr gwascat AnnotationHubData In total 86 packages are required directly or indirectly (143) when installing 'grasp2db' (1.1.0) Depends Imports Suggests Enhances Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'grasp2db' Imported functions Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of grasp2db.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on grasp2db: number of required packages that can be reduced if moving parent package to Suggests of grasp2db.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on grasp2db
RSQLite Depends 9 0 0 17 0
dplyr Depends 5 0 0 20 0
dbplyr Depends 1 0 0 28 0
AnnotationHub Imports Parent package is listed in Imports of grasp2db but no object from parent package is imported. 85 40
methods Imports 1 0 0 0 0
utils Imports 2 0 0 0 0
stats Imports 2 0 0 0 0
digest Imports 1 0 0 1 0
GenomeInfoDb Imports 3 0 0 11 0
gwascat Suggests No object is imported into the namespace of grasp2db. 129 44
knitr Suggests No object is imported into the namespace of grasp2db. 12 6
AnnotationHubData Enhances No object is imported into the namespace of grasp2db. 131 46

Analysis was done with pkgndep.