Dependency analysis on package humanStemCell

General information

Bioconductor link link
Package version0.36.0
Number of strong dependencies47
Number of all dependencies47
Number of parent packages2
Max heaviness from parent packages41
Total heaviness from parent packages41
Number of parent packages (including Suggests and Enhances)2
Max co-heaviness from parent packages ("hgu133plus2.db" and "Biobase")6

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of humanStemCell and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on humanStemCell.

Adjust heatmap size:
Base packages Other packages Depends utils methods graphics stats stats4 grDevices tools BiocGenerics AnnotationDbi org.Hs.eg.db Biobase IRanges DBI RSQLite S4Vectors KEGGREST bit64 blob memoise pkgconfig Rcpp plogr httr png Biostrings bit rlang vctrs cachem curl jsonlite mime openssl R6 XVector GenomeInfoDb crayon cli glue fastmap askpass zlibbioc RCurl GenomeInfoDbData sys bitops 0 0.5 1 Imported methods 0 20 40 Required packages 0 20 40 Heaviness from parents Biobase hgu133plus2.db In total 47 packages are required directly or indirectly (47) when installing 'humanStemCell' (0.36.0) Depends Base packages that are required Contributed packages that are required Packages that are required for installing 'humanStemCell' Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of humanStemCell.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on humanStemCell: number of required packages that can be reduced if moving parent package to Suggests of humanStemCell.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on humanStemCell
hgu133plus2.db Depends Parent package is listed in Depends of humanStemCell but no object from parent package is imported. 46 41
Biobase Depends Parent package is listed in Depends of humanStemCell but no object from parent package is imported. 5 0

Analysis was done with pkgndep.