Dependency analysis on package iCOBRA

General information

Bioconductor link link
Package version1.24.1
Number of strong dependencies85
Number of all dependencies103
Number of parent packages13
Max heaviness from parent packages6
Total heaviness from parent packages25
Number of parent packages (including Suggests and Enhances)16
Max co-heaviness from parent packages ("UpSetR" and "ggplot2")10

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of iCOBRA and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on iCOBRA.

Adjust heatmap size:
Base packages Other packages Imports Suggests utils methods stats grDevices graphics tools grid splines glue magrittr R6 rlang lifecycle digest crayon ellipsis Rcpp jsonlite withr htmltools fastmap base64enc jquerylib mime tibble fansi pillar pkgconfig vctrs cli utf8 later promises bslib sass fs rappdirs xfun stringr stringi farver labeling munsell RColorBrewer viridisLite colorspace yaml httpuv xtable fontawesome sourcetools commonmark cachem plyr shiny gtable isoband MASS mgcv scales nlme Matrix lattice gplots gtools caTools KernSmooth bitops generics tidyselect purrr htmlwidgets crosstalk lazyeval ggplot2 gridExtra evaluate highr knitr tinytex brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 0 1 2 Imported methods 0 20 40 Required packages 0 5 10 Heaviness from parents methods limma markdown reshape2 ROCR scales dplyr DT shiny shinydashboard shinyBS ggplot2 UpSetR knitr rmarkdown testthat In total 85 packages are required directly or indirectly (103) when installing 'iCOBRA' (1.24.1) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'iCOBRA' Imported functions The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of iCOBRA.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on iCOBRA: number of required packages that can be reduced if moving parent package to Suggests of iCOBRA.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on iCOBRA
ROCR Imports 2 0 0 10 6
DT Imports 1 0 0 20 5
dplyr Imports The whole set of functions/methods/classes from parent package is imported to the namespace of iCOBRA. 20 4
reshape2 Imports 1 0 0 10 3
markdown Imports Parent package is listed in Imports of iCOBRA but no object from parent package is imported. 5 2
UpSetR Imports The whole set of functions/methods/classes from parent package is imported to the namespace of iCOBRA. 41 2
limma Imports The whole set of functions/methods/classes from parent package is imported to the namespace of iCOBRA. 5 1
shinydashboard Imports The whole set of functions/methods/classes from parent package is imported to the namespace of iCOBRA. 35 1
shinyBS Imports 1 0 0 35 1
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of iCOBRA. 0 0
scales Imports 2 0 0 15 0
shiny Imports The whole set of functions/methods/classes from parent package is imported to the namespace of iCOBRA. 34 0
ggplot2 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of iCOBRA. 37 0
testthat Suggests No object is imported into the namespace of iCOBRA. 36 14
rmarkdown Suggests No object is imported into the namespace of iCOBRA. 27 5
knitr Suggests No object is imported into the namespace of iCOBRA. 12 3

Analysis was done with pkgndep.