Dependency analysis on package JASPAR2020

General information

Bioconductor link link
Package version0.99.10
Number of strong dependencies1
Number of all dependencies137
Number of parent packages1
Max heaviness from parent packages1
Total heaviness from parent packages1
Number of parent packages (including Suggests and Enhances)4

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of JASPAR2020 and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on JASPAR2020.

Adjust heatmap size:
Base packages Other packages Depends Suggests methods tools stats utils grDevices grid parallel graphics stats4 splines stringr yaml glue magrittr stringi evaluate highr xfun jsonlite rlang digest fastmap R6 bslib htmltools jquerylib knitr tinytex sass base64enc fs rappdirs Biobase Biostrings BiocGenerics BiocParallel BSgenome caTools CNEr DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges DBI RSQLite rtracklayer seqLogo S4Vectors TFMPvalue XML XVector crayon futile.logger snow codetools BH matrixStats Rsamtools bitops GenomicAlignments readr reshape2 ggplot2 poweRlaw annotate GO.db R.utils KEGGREST RCurl GenomeInfoDbData bit64 blob memoise pkgconfig Rcpp plogr zlibbioc BiocIO restfulr lambda.r futile.options Rhtslib SummarizedExperiment cli clipr hms lifecycle tibble vroom cpp11 tzdb plyr gtable isoband MASS mgcv scales withr pracma AnnotationDbi xtable httr R.oo R.methodsS3 png bit vctrs cachem rjson formatR MatrixGenerics Matrix DelayedArray ellipsis fansi pillar tidyselect progress nlme farver labeling munsell RColorBrewer viridisLite curl mime openssl lattice utf8 purrr prettyunits colorspace askpass sys 0 0.5 1 Imported methods 0 50 100 Required packages 0 50 100 Heaviness from parents methods knitr rmarkdown TFBSTools In total 1 packages are required directly or indirectly (137) when installing 'JASPAR2020' (0.99.10) Depends Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'JASPAR2020' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of JASPAR2020.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on JASPAR2020: number of required packages that can be reduced if moving parent package to Suggests of JASPAR2020.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on JASPAR2020
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of JASPAR2020. 0 1
TFBSTools Suggests No object is imported into the namespace of JASPAR2020. 123 123
rmarkdown Suggests No object is imported into the namespace of JASPAR2020. 27 27
knitr Suggests No object is imported into the namespace of JASPAR2020. 12 12

Analysis was done with pkgndep.