Dependency analysis on package M3C

General information

Bioconductor link link
Package version1.18.0
Number of strong dependencies63
Number of all dependencies80
Number of parent packages11
Max heaviness from parent packages29
Total heaviness from parent packages49
Number of parent packages (including Suggests and Enhances)13
Max co-heaviness from parent packages ("doParallel" and "parallel")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of M3C and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on M3C.

Adjust heatmap size:
Base packages Other packages Imports Suggests utils stats methods grDevices graphics grid parallel splines tools iterators codetools lattice glue magrittr Rcpp foreach withr Matrix jsonlite rappdirs digest rlang R6 snow openssl reticulate RSpectra askpass RcppTOML here png RcppEigen sys rprojroot gtable isoband MASS mgcv scales tibble nlme farver labeling lifecycle munsell RColorBrewer viridisLite ellipsis fansi pillar pkgconfig vctrs colorspace cli crayon utf8 evaluate highr stringr yaml xfun stringi bslib htmltools jquerylib knitr tinytex sass base64enc fastmap fs 0 0.5 1 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents parallel matrixcalc corpcor foreach cluster Rtsne doSNOW doParallel Matrix umap ggplot2 knitr rmarkdown In total 63 packages are required directly or indirectly (80) when installing 'M3C' (1.18.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'M3C' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of M3C.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on M3C: number of required packages that can be reduced if moving parent package to Suggests of M3C.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on M3C
ggplot2 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of M3C. 37 29
umap Imports The whole set of functions/methods/classes from parent package is imported to the namespace of M3C. 22 13
doSNOW Imports The whole set of functions/methods/classes from parent package is imported to the namespace of M3C. 5 2
matrixcalc Imports The whole set of functions/methods/classes from parent package is imported to the namespace of M3C. 0 1
corpcor Imports 1 0 0 1 1
cluster Imports The whole set of functions/methods/classes from parent package is imported to the namespace of M3C. 4 1
Rtsne Imports The whole set of functions/methods/classes from parent package is imported to the namespace of M3C. 4 1
doParallel Imports The whole set of functions/methods/classes from parent package is imported to the namespace of M3C. 5 1
parallel Imports The whole set of functions/methods/classes from parent package is imported to the namespace of M3C. 0 0
foreach Imports 1 0 0 3 0
Matrix Imports The whole set of functions/methods/classes from parent package is imported to the namespace of M3C. 7 0
rmarkdown Suggests No object is imported into the namespace of M3C. 27 17
knitr Suggests No object is imported into the namespace of M3C. 12 8

Analysis was done with pkgndep.