Dependency analysis on package minfiData

General information

Bioconductor link link
Package version0.42.0
Number of strong dependencies144
Number of all dependencies144
Number of parent packages3
Max heaviness from parent packages1
Total heaviness from parent packages2
Number of parent packages (including Suggests and Enhances)3

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of minfiData and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on minfiData.

Adjust heatmap size:
Base packages Other packages Depends methods stats grDevices graphics utils stats4 tools parallel grid splines BiocGenerics GenomicRanges SummarizedExperiment Biostrings bumphunter S4Vectors GenomeInfoDb Biobase IRanges beanplot RColorBrewer lattice nor1mix siggenes limma preprocessCore illuminaio DelayedMatrixStats mclust genefilter nlme reshape MASS quadprog data.table GEOquery DelayedArray HDF5Array BiocParallel XVector MatrixGenerics Matrix crayon foreach iterators locfit matrixStats doRNG GenomicFeatures AnnotationDbi RCurl GenomeInfoDbData multtest scrime base64 sparseMatrixStats annotate survival plyr readr xml2 dplyr tidyr magrittr curl R.utils rhdf5 rhdf5filters Rhdf5lib futile.logger snow codetools BH zlibbioc rngtools DBI RSQLite BiocIO rtracklayer biomaRt KEGGREST bitops openssl Rcpp XML xtable httr cli clipr hms lifecycle R6 rlang tibble vroom cpp11 tzdb generics glue tidyselect vctrs pillar ellipsis purrr R.oo R.methodsS3 lambda.r futile.options digest bit64 blob memoise pkgconfig plogr Rsamtools GenomicAlignments restfulr progress stringr BiocFileCache rappdirs png askpass jsonlite mime fansi withr utf8 formatR bit cachem Rhtslib rjson yaml prettyunits stringi dbplyr filelock sys fastmap assertthat minfi 0 0.5 1 Imported methods 0 50 100 Required packages 0 0.5 1 Heaviness from parents minfi IlluminaHumanMethylation450kmanifest IlluminaHumanMethylation450kanno.ilmn12.hg19 In total 144 packages are required directly or indirectly (144) when installing 'minfiData' (0.42.0) Depends Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'minfiData' The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of minfiData.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on minfiData: number of required packages that can be reduced if moving parent package to Suggests of minfiData.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on minfiData
IlluminaHumanMethylation450kmanifest Depends Parent package is listed in Depends of minfiData but no object from parent package is imported. 142 1
IlluminaHumanMethylation450kanno.ilmn12.hg19 Depends Parent package is listed in Depends of minfiData but no object from parent package is imported. 142 1
minfi Depends The whole set of functions/methods/classes from parent package is imported to the namespace of minfiData. 141 0

Analysis was done with pkgndep.