Dependency analysis on package oligoData

General information

Bioconductor link link
Package version1.8.0
Number of strong dependencies53
Number of all dependencies59
Number of parent packages1
Max heaviness from parent packages53
Total heaviness from parent packages53
Number of parent packages (including Suggests and Enhances)7

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of oligoData and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on oligoData.

Adjust heatmap size:
Base packages Other packages Depends Suggests graphics methods splines stats stats4 utils grDevices tools grid BiocGenerics oligoClasses Biobase Biostrings affyio affxparser DBI ff preprocessCore RSQLite zlibbioc IRanges GenomicRanges SummarizedExperiment foreach BiocManager S4Vectors XVector GenomeInfoDb crayon bit bit64 blob memoise pkgconfig Rcpp plogr MatrixGenerics Matrix DelayedArray codetools iterators RCurl GenomeInfoDbData rlang vctrs cachem matrixStats lattice bitops cli glue fastmap oligo 0 0.5 1 Imported methods 0 20 40 Required packages 0 20 40 Heaviness from parents oligo pd.hg.u95av2 pd.huex.1.0.st.v2 pd.mapping50k.xba240 pd.hg18.60mer.expr pd.2006.07.18.hg18.refseq.promoter pd.hugene.1.0.st.v1 In total 53 packages are required directly or indirectly (59) when installing 'oligoData' (1.8.0) Depends Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'oligoData' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of oligoData.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on oligoData: number of required packages that can be reduced if moving parent package to Suggests of oligoData.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on oligoData
oligo Depends The whole set of functions/methods/classes from parent package is imported to the namespace of oligoData. 52 53
pd.hg.u95av2 Suggests No object is imported into the namespace of oligoData. 53 1
pd.huex.1.0.st.v2 Suggests No object is imported into the namespace of oligoData. 53 1
pd.mapping50k.xba240 Suggests No object is imported into the namespace of oligoData. 53 1
pd.hg18.60mer.expr Suggests No object is imported into the namespace of oligoData. 53 1
pd.2006.07.18.hg18.refseq.promoter Suggests No object is imported into the namespace of oligoData. 53 1
pd.hugene.1.0.st.v1 Suggests No object is imported into the namespace of oligoData. 53 1

Analysis was done with pkgndep.