Dependency analysis on package pasillaBamSubset

General information

Bioconductor link link
Package version0.34.0
Number of strong dependencies0
Number of all dependencies116
Number of parent packages0
Max heaviness from parent packages0
Total heaviness from parent packages0
Number of parent packages (including Suggests and Enhances)1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of pasillaBamSubset and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on pasillaBamSubset.

Adjust heatmap size:
Base packages Other packages Suggests methods stats utils parallel tools stats4 graphics grDevices grid splines DEXSeq BiocParallel Biobase SummarizedExperiment IRanges GenomicRanges DESeq2 AnnotationDbi RColorBrewer S4Vectors BiocGenerics biomaRt hwriter stringr Rsamtools statmod geneplotter genefilter futile.logger snow codetools BH MatrixGenerics Matrix GenomeInfoDb DelayedArray XVector locfit ggplot2 Rcpp RcppArmadillo DBI RSQLite KEGGREST XML progress httr digest BiocFileCache rappdirs xml2 glue magrittr stringi Biostrings zlibbioc bitops Rhtslib lattice annotate survival lambda.r futile.options matrixStats RCurl GenomeInfoDbData gtable isoband MASS mgcv rlang scales tibble withr bit64 blob memoise pkgconfig plogr png hms prettyunits R6 crayon curl jsonlite mime openssl dbplyr dplyr filelock xtable formatR nlme farver labeling lifecycle munsell viridisLite ellipsis fansi pillar vctrs bit cachem askpass assertthat cli purrr tidyselect generics colorspace utf8 fastmap sys 0 0.5 1 Imported methods 0 50 100 Required packages 0 50 100 Heaviness from parents pasilla In total 0 packages are required directly or indirectly (116) when installing 'pasillaBamSubset' (0.34.0) Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'pasillaBamSubset'


Dependency table

"Import" information is from the NAMESPACE file of pasillaBamSubset.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on pasillaBamSubset: number of required packages that can be reduced if moving parent package to Suggests of pasillaBamSubset.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on pasillaBamSubset
pasilla Suggests No object is imported into the namespace of pasillaBamSubset. 115 116

Analysis was done with pkgndep.