Dependency analysis on package penalized

General information

CRAN link link
Package version0.9-52
Number of strong dependencies12
Number of all dependencies55
Number of parent packages4
Max heaviness from parent packages7
Total heaviness from parent packages8
Number of parent packages (including Suggests and Enhances)5
Max co-heaviness from parent packages ("RcppArmadillo" and "survival")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of penalized and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on penalized.

Adjust heatmap size:
Base packages Other packages Depends Imports LinkingTo Suggests methods utils stats graphics splines grid grDevices stats4 tools Matrix lattice Rcpp survival Biobase AnnotationDbi annotate BiocGenerics IRanges DBI RSQLite S4Vectors KEGGREST XML xtable httr bit64 blob memoise pkgconfig plogr png Biostrings curl jsonlite mime openssl R6 bit rlang vctrs cachem XVector GenomeInfoDb crayon askpass cli glue fastmap zlibbioc RCurl GenomeInfoDbData sys bitops 0 2 4 Imported methods 0 20 40 Required packages 0 20 40 Heaviness from parents methods survival Rcpp RcppArmadillo globaltest In total 12 packages are required directly or indirectly (55) when installing 'penalized' (0.9-52) Depends Imports LinkingTo Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'penalized' Imported functions The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of penalized.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on penalized: number of required packages that can be reduced if moving parent package to Suggests of penalized.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on penalized
survival Depends 5 0 0 9 7
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of penalized. 0 0
Rcpp Imports 1 0 0 2 0
RcppArmadillo LinkingTo Parent package is listed in LinkingTo of penalized but no object from parent package is imported. 4 1
globaltest Suggests No object is imported into the namespace of penalized. 53 43

Analysis was done with pkgndep.