Dependency analysis on package qvalue

General information

Bioconductor link link
Package version2.28.0
Number of strong dependencies44
Number of all dependencies49
Number of parent packages4
Max heaviness from parent packages31
Total heaviness from parent packages37
Number of parent packages (including Suggests and Enhances)5
Max co-heaviness from parent packages ("ggplot2" and "reshape2")5

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of qvalue and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on qvalue.

Adjust heatmap size:
Base packages Other packages Imports Suggests stats utils methods tools grDevices grid graphics splines glue magrittr stringr stringi plyr Rcpp digest gtable isoband MASS mgcv rlang scales tibble withr nlme Matrix farver labeling lifecycle munsell R6 RColorBrewer viridisLite ellipsis fansi pillar pkgconfig vctrs lattice colorspace cli crayon utf8 evaluate highr yaml xfun 0 2 4 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents splines grid reshape2 ggplot2 knitr In total 44 packages are required directly or indirectly (49) when installing 'qvalue' (2.28.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'qvalue' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of qvalue.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on qvalue: number of required packages that can be reduced if moving parent package to Suggests of qvalue.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on qvalue
ggplot2 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of qvalue. 37 31
reshape2 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of qvalue. 10 6
splines Imports The whole set of functions/methods/classes from parent package is imported to the namespace of qvalue. 0 0
grid Imports 4 0 0 0 0
knitr Suggests No object is imported into the namespace of qvalue. 12 5

Analysis was done with pkgndep.