Dependency analysis on package RTCGA.rnaseq

General information

Bioconductor link link
Package version20151101.26.0
Number of strong dependencies128
Number of all dependencies138
Number of parent packages1
Max heaviness from parent packages128
Total heaviness from parent packages128
Number of parent packages (including Suggests and Enhances)3

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of RTCGA.rnaseq and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on RTCGA.rnaseq.

Adjust heatmap size:
Base packages Other packages Depends Suggests methods utils tools stats grDevices graphics splines grid parallel stringi magrittr glue stringr evaluate highr yaml xfun knitr rlang R6 digest jsonlite XML assertthat rvest data.table xml2 dplyr purrr survival survminer ggplot2 ggthemes viridis scales httr lifecycle selectr tibble generics tidyselect vctrs pillar Matrix ggpubr gridExtra maxstat broom tidyr survMisc ggtext gtable isoband MASS mgcv withr viridisLite farver labeling munsell RColorBrewer curl mime openssl ellipsis fansi pkgconfig cli crayon utf8 lattice ggrepel ggsci cowplot ggsignif polynom rstatix exactRankTests mvtnorm backports cpp11 KMsurv zoo km.ci xtable gridtext nlme colorspace askpass Rcpp corrplot car markdown RCurl png jpeg sys carData abind nnet pbkrtest quantreg maptools lme4 bitops numDeriv SparseM MatrixModels sp foreign boot minqa nloptr RcppEigen testthat brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 bslib htmltools jquerylib tinytex sass base64enc fastmap fs rappdirs 0 0.5 1 Imported methods 0 50 100 Required packages 0 50 100 Heaviness from parents RTCGA knitr rmarkdown In total 128 packages are required directly or indirectly (138) when installing 'RTCGA.rnaseq' (20151101.26.0) Depends Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'RTCGA.rnaseq' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of RTCGA.rnaseq.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on RTCGA.rnaseq: number of required packages that can be reduced if moving parent package to Suggests of RTCGA.rnaseq.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on RTCGA.rnaseq
RTCGA Depends The whole set of functions/methods/classes from parent package is imported to the namespace of RTCGA.rnaseq. 127 128
rmarkdown Suggests No object is imported into the namespace of RTCGA.rnaseq. 27 10
knitr Suggests No object is imported into the namespace of RTCGA.rnaseq. 12 0

Analysis was done with pkgndep.