Dependency analysis on package Rattus.norvegicus

General information

Bioconductor link link
Package version1.3.1
Number of strong dependencies104
Number of all dependencies104
Number of parent packages7
Max heaviness from parent packages4
Total heaviness from parent packages7
Number of parent packages (including Suggests and Enhances)7

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of Rattus.norvegicus and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on Rattus.norvegicus.

Adjust heatmap size:
Base packages Other packages Depends methods utils stats4 stats graphics grDevices tools parallel grid BiocGenerics Biobase IRanges DBI RSQLite S4Vectors KEGGREST bit64 blob memoise pkgconfig Rcpp plogr httr png Biostrings bit rlang vctrs cachem curl jsonlite mime openssl R6 XVector GenomeInfoDb crayon cli glue fastmap askpass zlibbioc RCurl GenomeInfoDbData sys bitops AnnotationDbi GenomicRanges BiocIO rtracklayer biomaRt BH XML Rsamtools GenomicAlignments restfulr progress stringr digest BiocFileCache rappdirs xml2 BiocParallel Rhtslib SummarizedExperiment rjson yaml hms prettyunits magrittr stringi dbplyr dplyr filelock futile.logger snow codetools MatrixGenerics Matrix DelayedArray ellipsis lifecycle assertthat pillar purrr tibble tidyselect withr generics lambda.r futile.options matrixStats lattice fansi utf8 formatR GenomicFeatures BiocManager graph RBGL 0 0.5 1 Imported methods 0 50 100 Required packages 0 2 4 Heaviness from parents methods AnnotationDbi GO.db org.Rn.eg.db GenomicFeatures TxDb.Rnorvegicus.UCSC.rn5.refGene OrganismDbi In total 104 packages are required directly or indirectly (104) when installing 'Rattus.norvegicus' (1.3.1) Depends Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'Rattus.norvegicus' The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of Rattus.norvegicus.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on Rattus.norvegicus: number of required packages that can be reduced if moving parent package to Suggests of Rattus.norvegicus.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on Rattus.norvegicus
OrganismDbi Depends The whole set of functions/methods/classes from parent package is imported to the namespace of Rattus.norvegicus. 100 4
GO.db Depends Parent package is listed in Depends of Rattus.norvegicus but no object from parent package is imported. 45 1
org.Rn.eg.db Depends Parent package is listed in Depends of Rattus.norvegicus but no object from parent package is imported. 45 1
TxDb.Rnorvegicus.UCSC.rn5.refGene Depends Parent package is listed in Depends of Rattus.norvegicus but no object from parent package is imported. 97 1
methods Depends Parent package is listed in Depends of Rattus.norvegicus but no object from parent package is imported. 0 0
AnnotationDbi Depends Parent package is listed in Depends of Rattus.norvegicus but no object from parent package is imported. 44 0
GenomicFeatures Depends Parent package is listed in Depends of Rattus.norvegicus but no object from parent package is imported. 96 0

Analysis was done with pkgndep.