Dependency analysis on package RedeR

General information

Bioconductor link link
Package version2.0.0
Number of strong dependencies11
Number of all dependencies45
Number of parent packages2
Max heaviness from parent packages10
Total heaviness from parent packages10
Number of parent packages (including Suggests and Enhances)7
Max co-heaviness from parent packages ("igraph" and "methods")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of RedeR and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on RedeR.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests stats utils methods grDevices graphics grid tools parallel magrittr Matrix pkgconfig lattice xfun yaml evaluate highr stringr glue stringi knitr htmltools jquerylib tinytex bslib jsonlite digest base64enc rlang fastmap sass fs R6 rappdirs mime RedeR igraph ape nlme Rcpp bookdown rmarkdown BiocManager 0 10 20 Imported methods 0 10 20 30 Required packages 0 10 20 Heaviness from parents methods igraph markdown knitr TreeAndLeaf rmarkdown BiocStyle In total 11 packages are required directly or indirectly (45) when installing 'RedeR' (2.0.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'RedeR' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of RedeR.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on RedeR: number of required packages that can be reduced if moving parent package to Suggests of RedeR.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on RedeR
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of RedeR. 0 0
igraph Imports 23 0 0 10 10
BiocStyle Suggests No object is imported into the namespace of RedeR. 30 26
rmarkdown Suggests No object is imported into the namespace of RedeR. 27 23
knitr Suggests No object is imported into the namespace of RedeR. 12 9
TreeAndLeaf Suggests No object is imported into the namespace of RedeR. 17 7
markdown Suggests No object is imported into the namespace of RedeR. 5 4

Analysis was done with pkgndep.