Dependency analysis on package reactome.db

General information

Bioconductor link link
Package version1.79.0
Number of strong dependencies45
Number of all dependencies45
Number of parent packages2
Max heaviness from parent packages44
Total heaviness from parent packages44
Number of parent packages (including Suggests and Enhances)3
Max co-heaviness from parent packages ("AnnotationDbi" and "methods")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of reactome.db and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on reactome.db.

Adjust heatmap size:
Base packages Other packages Depends Suggests methods utils stats stats4 graphics grDevices tools DBI bit64 blob memoise pkgconfig Rcpp plogr bit rlang vctrs cachem cli glue fastmap BiocGenerics Biobase IRanges RSQLite S4Vectors KEGGREST httr png Biostrings curl jsonlite mime openssl R6 XVector GenomeInfoDb crayon askpass zlibbioc RCurl GenomeInfoDbData sys bitops 0 0.5 1 Imported methods 0 20 40 Required packages 0 20 40 Heaviness from parents methods AnnotationDbi RSQLite In total 45 packages are required directly or indirectly (45) when installing 'reactome.db' (1.79.0) Depends Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'reactome.db' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of reactome.db.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on reactome.db: number of required packages that can be reduced if moving parent package to Suggests of reactome.db.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on reactome.db
AnnotationDbi Depends The whole set of functions/methods/classes from parent package is imported to the namespace of reactome.db. 44 44
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of reactome.db. 0 0
RSQLite Suggests No object is imported into the namespace of reactome.db. 17 0

Analysis was done with pkgndep.