Dependency analysis on package robustlmm

General information

CRAN link link
Package version2.5-1
Number of strong dependencies66
Number of all dependencies75
Number of parent packages12
Max heaviness from parent packages21
Total heaviness from parent packages37
Number of parent packages (including Suggests and Enhances)17
Max co-heaviness from parent packages ("ggplot2" and "lme4")18

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of robustlmm and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on robustlmm.

Adjust heatmap size:
Base packages Other packages Depends Imports LinkingTo Suggests utils stats methods graphics grid grDevices splines tools parallel lattice Rcpp Matrix magrittr glue MASS nlme cli crayon digest ellipsis lifecycle R6 rlang withr fansi tibble pillar pkgconfig vctrs utf8 boot minqa nloptr RcppEigen testthat brio callr desc evaluate jsonlite pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 DEoptimR gtable isoband mgcv scales farver labeling munsell RColorBrewer viridisLite colorspace estimability numDeriv mvtnorm xtable plyr stringr stringi 0 10 20 Imported methods 0 20 40 Required packages 0 10 20 Heaviness from parents Matrix lme4 methods xtable Rcpp fastGHQuad lattice robustbase nlme ggplot2 cubature RcppEigen digest estimability microbenchmark emmeans reshape2 In total 66 packages are required directly or indirectly (75) when installing 'robustlmm' (2.5-1) Depends Imports LinkingTo Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'robustlmm' Imported functions Imported S4 methods Imported S4 classes Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of robustlmm.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on robustlmm: number of required packages that can be reduced if moving parent package to Suggests of robustlmm.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on robustlmm
lme4 Depends 11 0 0 49 21
Matrix Depends 5 16 0 7 0
ggplot2 Imports 8 0 0 37 11
robustbase Imports 2 2 1 5 2
xtable Imports 2 0 0 2 1
fastGHQuad Imports 1 0 0 3 1
methods Imports 14 0 0 0 0
Rcpp Imports 0 0 1 2 0
lattice Imports 2 0 0 5 0
nlme Imports 3 0 0 6 0
cubature LinkingTo Parent package is listed in LinkingTo of robustlmm but no object from parent package is imported. 3 1
RcppEigen LinkingTo Parent package is listed in LinkingTo of robustlmm but no object from parent package is imported. 9 0
emmeans Suggests No object is imported into the namespace of robustlmm. 8 4
reshape2 Suggests No object is imported into the namespace of robustlmm. 10 4
estimability Suggests No object is imported into the namespace of robustlmm. 1 1
microbenchmark Suggests No object is imported into the namespace of robustlmm. 2 1
digest Suggests No object is imported into the namespace of robustlmm. 1 0

The following table lists pairs of parent packages with co-heaviness larger than 10. The co-heaviness measures the number of additional dependencies that two parent packages simultaneously import and are only imported by the two parents.

Note the co-heaviness from parents can be always easily observed in the dependency heatmap.

Parent 1 Parent 2 Co-heaviness on robustlmm Co-heaviness as Jaccard coeffcient
lme4 ggplot2 18 0.36

Analysis was done with pkgndep.