Dependency analysis on package rols

General information

Bioconductor link link
Package version2.24.2
Number of strong dependencies27
Number of all dependencies99
Number of parent packages7
Max heaviness from parent packages12
Total heaviness from parent packages20
Number of parent packages (including Suggests and Enhances)14
Max co-heaviness from parent packages ("Biobase" and "BiocGenerics")3

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of rols and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on rols.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils stats tools grDevices graphics stats4 R6 jsonlite rlang glue crayon pkgconfig vctrs cli BiocGenerics curl mime openssl askpass sys ellipsis lifecycle hms prettyunits magrittr evaluate yaml fastmap digest highr stringr xfun stringi htmltools jquerylib base64enc Rcpp knitr tinytex bslib sass fs rappdirs generics cpp11 htmlwidgets crosstalk promises lazyeval later bookdown rmarkdown BiocManager brio callr desc pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj fansi rematch2 tibble pillar utf8 AnnotationDbi Biobase IRanges DBI RSQLite S4Vectors KEGGREST bit64 blob memoise plogr httr png Biostrings bit cachem XVector GenomeInfoDb zlibbioc RCurl GenomeInfoDbData bitops 0 1 2 Imported methods 0 20 40 Required packages 0 10 20 Heaviness from parents methods utils jsonlite BiocGenerics Biobase httr progress lubridate knitr DT rmarkdown BiocStyle testthat GO.db In total 27 packages are required directly or indirectly (99) when installing 'rols' (2.24.2) Depends Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'rols' Imported functions Imported S4 classes The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of rols.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on rols: number of required packages that can be reduced if moving parent package to Suggests of rols.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on rols
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of rols. 0 0
progress Imports The whole set of functions/methods/classes from parent package is imported to the namespace of rols. 14 12
httr Imports The whole set of functions/methods/classes from parent package is imported to the namespace of rols. 9 7
Biobase Imports 1 0 1 5 1
utils Imports The whole set of functions/methods/classes from parent package is imported to the namespace of rols. 0 0
jsonlite Imports The whole set of functions/methods/classes from parent package is imported to the namespace of rols. 1 0
BiocGenerics Imports 1 0 0 4 0
GO.db Suggests No object is imported into the namespace of rols. 45 24
BiocStyle Suggests No object is imported into the namespace of rols. 30 22
testthat Suggests No object is imported into the namespace of rols. 36 21
rmarkdown Suggests No object is imported into the namespace of rols. 27 19
DT Suggests No object is imported into the namespace of rols. 20 14
knitr Suggests No object is imported into the namespace of rols. 12 8
lubridate Suggests No object is imported into the namespace of rols. 3 3

Analysis was done with pkgndep.