Dependency analysis on package rpx

General information

Bioconductor link link
Package version2.4.0
Number of strong dependencies50
Number of all dependencies91
Number of parent packages7
Max heaviness from parent packages43
Total heaviness from parent packages46
Number of parent packages (including Suggests and Enhances)12
Max co-heaviness from parent packages ("BiocFileCache" and "curl")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of rpx and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on rpx.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods stats utils tools grDevices graphics stats4 glue magrittr R6 rlang jsonlite rappdirs crayon fastmap bitops cli lifecycle pillar tibble vctrs withr pkgconfig ellipsis fansi utf8 dbplyr dplyr RSQLite DBI filelock curl httr assertthat blob purrr tidyselect generics bit64 memoise Rcpp plogr mime openssl bit cachem askpass sys evaluate yaml xfun highr stringr stringi digest knitr htmltools jquerylib tinytex bslib base64enc sass fs BiocGenerics S4Vectors IRanges XVector GenomeInfoDb zlibbioc RCurl GenomeInfoDbData bookdown rmarkdown BiocManager brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 0 1 2 3 Imported methods 0 20 40 Required packages 0 20 40 Heaviness from parents methods curl utils jsonlite xml2 RCurl BiocFileCache knitr Biostrings rmarkdown BiocStyle testthat In total 50 packages are required directly or indirectly (91) when installing 'rpx' (2.4.0) Depends Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'rpx' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of rpx.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on rpx: number of required packages that can be reduced if moving parent package to Suggests of rpx.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on rpx
methods Depends 3 0 0 0 0
BiocFileCache Imports The whole set of functions/methods/classes from parent package is imported to the namespace of rpx. 46 43
RCurl Imports 2 0 0 2 2
xml2 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of rpx. 1 1
curl Imports 1 0 0 0 0
utils Imports 2 0 0 0 0
jsonlite Imports 1 0 0 1 0
BiocStyle Suggests No object is imported into the namespace of rpx. 30 19
rmarkdown Suggests No object is imported into the namespace of rpx. 27 16
testthat Suggests No object is imported into the namespace of rpx. 36 15
Biostrings Suggests No object is imported into the namespace of rpx. 17 9
knitr Suggests No object is imported into the namespace of rpx. 12 7

Analysis was done with pkgndep.