Dependency analysis on package SeuratObject

General information

CRAN link link
Package version4.1.0
Number of strong dependencies23
Number of all dependencies66
Number of parent packages15
Max heaviness from parent packages1
Total heaviness from parent packages5
Number of parent packages (including Suggests and Enhances)17
Max co-heaviness from parent packages ("future.apply" and "future")6

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of SeuratObject and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on SeuratObject.

Adjust heatmap size:
Base packages Other packages Imports LinkingTo Suggests utils methods graphics stats grDevices grid tools parallel splines digest lattice globals listenv parallelly codetools Matrix sp future Rcpp glue rlang tibble withr lifecycle R6 ellipsis fansi magrittr pillar pkgconfig vctrs cli crayon utf8 brio callr desc evaluate jsonlite pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 gtable isoband MASS mgcv scales nlme farver labeling munsell RColorBrewer viridisLite colorspace 0 5 10 15 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents grDevices grid methods stats tools utils rlang progressr Rcpp Matrix sp future rgeos future.apply RcppEigen testthat ggplot2 In total 23 packages are required directly or indirectly (66) when installing 'SeuratObject' (4.1.0) Imports LinkingTo Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'SeuratObject' Imported functions Imported S4 classes Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of SeuratObject.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on SeuratObject: number of required packages that can be reduced if moving parent package to Suggests of SeuratObject.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on SeuratObject
rlang Imports 7 0 0 1 1
progressr Imports 3 0 0 2 1
rgeos Imports 1 0 0 8 1
future.apply Imports 2 0 0 9 1
grDevices Imports 1 0 0 0 0
grid Imports 1 0 0 0 0
methods Imports 19 0 0 0 0
stats Imports 2 0 0 0 0
tools Imports 1 0 0 0 0
utils Imports 8 0 0 0 0
Rcpp Imports 1 0 0 2 0
Matrix Imports 5 0 1 7 0
sp Imports 7 0 4 7 0
future Imports 1 0 0 8 0
RcppEigen LinkingTo Parent package is listed in LinkingTo of SeuratObject but no object from parent package is imported. 9 1
testthat Suggests No object is imported into the namespace of SeuratObject. 36 29
ggplot2 Suggests No object is imported into the namespace of SeuratObject. 37 28

Analysis was done with pkgndep.