Dependency analysis on package sangerseqR

General information

Bioconductor link link
Package version1.32.0
Number of strong dependencies46
Number of all dependencies59
Number of parent packages3
Max heaviness from parent packages28
Total heaviness from parent packages39
Number of parent packages (including Suggests and Enhances)7
Max co-heaviness from parent packages ("shiny" and "Biostrings")6

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of sangerseqR and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on sangerseqR.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils stats graphics tools grDevices stats4 glue magrittr crayon jsonlite htmltools R6 rlang fastmap bslib digest base64enc sass jquerylib fs rappdirs BiocGenerics S4Vectors IRanges XVector GenomeInfoDb zlibbioc RCurl GenomeInfoDbData bitops httpuv mime xtable fontawesome sourcetools later promises withr commonmark cachem ellipsis lifecycle Rcpp yaml xfun evaluate highr stringr stringi bookdown knitr rmarkdown BiocManager tinytex 0 0.5 1 Imported methods 0 10 20 30 Required packages 0 10 20 Heaviness from parents Biostrings methods shiny RUnit BiocGenerics knitr BiocStyle In total 46 packages are required directly or indirectly (59) when installing 'sangerseqR' (1.32.0) Depends Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'sangerseqR' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of sangerseqR.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on sangerseqR: number of required packages that can be reduced if moving parent package to Suggests of sangerseqR.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on sangerseqR
Biostrings Depends The whole set of functions/methods/classes from parent package is imported to the namespace of sangerseqR. 17 11
shiny Imports The whole set of functions/methods/classes from parent package is imported to the namespace of sangerseqR. 34 28
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of sangerseqR. 0 0
BiocStyle Suggests No object is imported into the namespace of sangerseqR. 30 12
knitr Suggests No object is imported into the namespace of sangerseqR. 12 7
RUnit Suggests No object is imported into the namespace of sangerseqR. 3 1
BiocGenerics Suggests No object is imported into the namespace of sangerseqR. 4 0

Analysis was done with pkgndep.