Dependency analysis on package seqLogo

General information

Bioconductor link link
Package version1.62.0
Number of strong dependencies4
Number of all dependencies58
Number of parent packages4
Max heaviness from parent packages1
Total heaviness from parent packages4
Number of parent packages (including Suggests and Enhances)8

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of seqLogo and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on seqLogo.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods tools stats utils grDevices graphics evaluate glue magrittr highr stringr yaml xfun stringi jsonlite digest rlang R6 knitr htmltools jquerylib tinytex bslib base64enc fastmap sass fs rappdirs bookdown rmarkdown BiocManager brio callr cli crayon desc ellipsis lifecycle pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 0.5 1 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents methods grid stats4 grDevices knitr rmarkdown BiocStyle testthat In total 4 packages are required directly or indirectly (58) when installing 'seqLogo' (1.62.0) Depends Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'seqLogo' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of seqLogo.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on seqLogo: number of required packages that can be reduced if moving parent package to Suggests of seqLogo.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on seqLogo
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of seqLogo. 0 1
grid Depends The whole set of functions/methods/classes from parent package is imported to the namespace of seqLogo. 0 1
stats4 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of seqLogo. 0 1
grDevices Imports 1 0 0 0 1
testthat Suggests No object is imported into the namespace of seqLogo. 36 35
BiocStyle Suggests No object is imported into the namespace of seqLogo. 30 29
rmarkdown Suggests No object is imported into the namespace of seqLogo. 27 26
knitr Suggests No object is imported into the namespace of seqLogo. 12 12

Analysis was done with pkgndep.