Dependency analysis on package spaMM

General information

CRAN link link
Package version3.11.14
Number of strong dependencies60
Number of all dependencies115
Number of parent packages17
Max heaviness from parent packages32
Total heaviness from parent packages50
Number of parent packages (including Suggests and Enhances)36
Max co-heaviness from parent packages ("nloptr" and "crayon")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of spaMM and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on spaMM.

Adjust heatmap size:
Base packages Other packages Imports LinkingTo Suggests Enhances utils methods stats graphics grDevices grid tools parallel splines lattice Rcpp digest rlang Matrix brio callr cli crayon desc ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 waldo withr glue rprojroot rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 testthat registry slam magic lpSolve linprog RcppProgress abind MASS nlme RcppEigen codetools boot minqa nloptr ROI iterators spaMM proxy numDeriv pbapply gmp geometry globals listenv parallelly lme4 foreach rcdd viridisLite RColorBrewer zoo mvtnorm mgcv cachem fastmap Rglpk future latticeExtra raster rasterVis sp png jpeg terra hexbin blackbox viridis ggplot2 gridExtra gtable isoband scales farver labeling munsell colorspace survival TH.data sandwich 0 20 40 60 Imported methods 0 20 40 60 80 Required packages 0 10 20 30 Heaviness from parents methods stats graphics pbapply gmp proxy Rcpp boot minqa crayon MASS ROI nlme Matrix geometry nloptr RcppEigen agridat rcdd maps rsae foreach memoise ROI.plugin.glpk future future.apply multilevel RSpectra testthat lme4 pedigreemm blackbox IsoriX Infusion multcomp RLRsim In total 60 packages are required directly or indirectly (115) when installing 'spaMM' (3.11.14) Imports LinkingTo Suggests Enhances Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'spaMM' Imported functions Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of spaMM.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on spaMM: number of required packages that can be reduced if moving parent package to Suggests of spaMM.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on spaMM
nloptr Imports Parent package is listed in Imports of spaMM but no object from parent package is imported. 37 32
geometry Imports Parent package is listed in Imports of spaMM but no object from parent package is imported. 8 6
ROI Imports 8 0 0 5 3
pbapply Imports 2 0 0 1 2
gmp Imports Parent package is listed in Imports of spaMM but no object from parent package is imported. 1 1
proxy Imports 2 0 0 2 1
boot Imports 1 0 0 2 1
minqa Imports 1 0 0 3 1
MASS Imports 3 0 0 5 1
nlme Imports 12 0 0 6 1
methods Imports 7 0 0 0 0
stats Imports 75 0 0 0 0
graphics Imports 17 0 0 0 0
Rcpp Imports 1 0 0 2 0
crayon Imports 6 0 0 3 0
Matrix Imports 30 0 0 7 0
RcppEigen LinkingTo Parent package is listed in LinkingTo of spaMM but no object from parent package is imported. 9 1
Infusion Suggests No object is imported into the namespace of spaMM. 82 23
IsoriX Suggests No object is imported into the namespace of spaMM. 73 14
blackbox Suggests No object is imported into the namespace of spaMM. 66 7
future.apply Suggests No object is imported into the namespace of spaMM. 9 6
future Suggests No object is imported into the namespace of spaMM. 8 5
foreach Suggests No object is imported into the namespace of spaMM. 3 3
memoise Suggests No object is imported into the namespace of spaMM. 4 3
pedigreemm Suggests No object is imported into the namespace of spaMM. 50 3
ROI.plugin.glpk Suggests No object is imported into the namespace of spaMM. 7 2
lme4 Suggests No object is imported into the namespace of spaMM. 49 2
agridat Suggests No object is imported into the namespace of spaMM. 0 1
rcdd Suggests No object is imported into the namespace of spaMM. 1 1
maps Suggests No object is imported into the namespace of spaMM. 2 1
rsae Suggests No object is imported into the namespace of spaMM. 2 1
multilevel Suggests No object is imported into the namespace of spaMM. 9 1
RSpectra Suggests No object is imported into the namespace of spaMM. 10 1
testthat Suggests No object is imported into the namespace of spaMM. 36 0
multcomp Enhances No object is imported into the namespace of spaMM. 16 8
RLRsim Enhances No object is imported into the namespace of spaMM. 51 4

Analysis was done with pkgndep.