Dependency analysis on package viper

General information

Bioconductor link link
Package version1.30.0
Number of strong dependencies22
Number of all dependencies23
Number of parent packages7
Max heaviness from parent packages9
Total heaviness from parent packages16
Number of parent packages (including Suggests and Enhances)8
Max co-heaviness from parent packages ("mixtools" and "e1071")2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of viper and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on viper.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests stats utils methods graphics grDevices splines grid BiocGenerics MASS class proxy kernlab segmented survival nlme Matrix lattice Biobase 0 0.5 1 Imported methods 0 5 10 Required packages 0 2 4 6 8 Heaviness from parents methods Biobase stats parallel KernSmooth e1071 mixtools bcellViper In total 22 packages are required directly or indirectly (23) when installing 'viper' (1.30.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'viper' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of viper.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on viper: number of required packages that can be reduced if moving parent package to Suggests of viper.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on viper
Biobase Depends The whole set of functions/methods/classes from parent package is imported to the namespace of viper. 5 2
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of viper. 0 0
mixtools Imports 1 0 0 14 9
e1071 Imports 1 0 0 8 3
parallel Imports 1 0 0 0 1
KernSmooth Imports 1 0 0 1 1
stats Imports 1 0 0 0 0
bcellViper Suggests No object is imported into the namespace of viper. 6 1

Analysis was done with pkgndep.