Dependency analysis on package Wrench

General information

Bioconductor link link
Package version1.14.0
Number of strong dependencies10
Number of all dependencies123
Number of parent packages5
Max heaviness from parent packages3
Total heaviness from parent packages6
Number of parent packages (including Suggests and Enhances)10
Max co-heaviness from parent packages ("locfit" and "limma")2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of Wrench and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on Wrench.

Adjust heatmap size:
Base packages Other packages Imports Suggests stats utils grDevices methods graphics grid tools parallel splines stats4 lattice Rcpp locfit glue magrittr limma evaluate highr stringr yaml xfun stringi jsonlite rlang digest fastmap R6 Biobase RColorBrewer matrixStats Matrix BiocGenerics survival codetools bitops bslib htmltools jquerylib knitr tinytex sass base64enc fs rappdirs glmnet foreach gplots Wrench shape RcppEigen iterators gtools caTools KernSmooth S4Vectors IRanges GenomicRanges SummarizedExperiment BiocParallel genefilter geneplotter ggplot2 RcppArmadillo GenomeInfoDb XVector MatrixGenerics DelayedArray futile.logger snow BH AnnotationDbi annotate gtable isoband MASS mgcv scales tibble withr RCurl GenomeInfoDbData zlibbioc lambda.r futile.options DBI RSQLite KEGGREST XML xtable httr nlme farver labeling lifecycle munsell viridisLite ellipsis fansi pillar pkgconfig vctrs formatR bit64 blob memoise plogr png Biostrings curl mime openssl colorspace cli crayon utf8 bit cachem askpass sys 0 0.5 1 Imported methods 0 20 40 60 80 Required packages 0 20 40 60 80 Heaviness from parents matrixStats stats graphics limma locfit edgeR knitr rmarkdown metagenomeSeq DESeq2 In total 10 packages are required directly or indirectly (123) when installing 'Wrench' (1.14.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'Wrench' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of Wrench.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on Wrench: number of required packages that can be reduced if moving parent package to Suggests of Wrench.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on Wrench
locfit Imports The whole set of functions/methods/classes from parent package is imported to the namespace of Wrench. 6 3
limma Imports The whole set of functions/methods/classes from parent package is imported to the namespace of Wrench. 5 2
matrixStats Imports The whole set of functions/methods/classes from parent package is imported to the namespace of Wrench. 0 1
stats Imports The whole set of functions/methods/classes from parent package is imported to the namespace of Wrench. 0 0
graphics Imports The whole set of functions/methods/classes from parent package is imported to the namespace of Wrench. 0 0
DESeq2 Suggests No object is imported into the namespace of Wrench. 93 85
rmarkdown Suggests No object is imported into the namespace of Wrench. 27 24
metagenomeSeq Suggests No object is imported into the namespace of Wrench. 30 21
knitr Suggests No object is imported into the namespace of Wrench. 12 10
edgeR Suggests No object is imported into the namespace of Wrench. 10 2

Analysis was done with pkgndep.