Dependency analysis on package BiocCheck

General information

Bioconductor link link
Package version1.32.0
Number of strong dependencies37
Number of all dependencies103
Number of parent packages10
Max heaviness from parent packages9
Total heaviness from parent packages28
Number of parent packages (including Suggests and Enhances)20
Max co-heaviness from parent packages ("biocViews" and "graph")4

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of BiocCheck and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on BiocCheck.

Adjust heatmap size:
Base packages Other packages Imports Suggests Enhances utils methods stats graphics tools stats4 parallel grDevices jsonlite R6 yaml glue magrittr evaluate highr stringr xfun stringi BiocGenerics curl mime openssl askpass sys BiocManager Biobase graph RBGL XML RCurl RUnit BH bitops digest rlang fs rappdirs knitr fastmap bslib htmltools jquerylib tinytex sass base64enc cli desc httr lifecycle rstudioapi withr clipr crayon gert gh purrr rprojroot whisker credentials zip gitcreds ini bookdown rmarkdown usethis callr ellipsis memoise pkgbuild pkgload rcmdcheck remotes roxygen2 rversions sessioninfo testthat processx cachem prettyunits xopen brew commonmark xml2 cpp11 brio praise ps waldo diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 5 10 Imported methods 0 20 40 60 Required packages 0 20 40 Heaviness from parents tools codetools methods utils BiocManager stringdist graph httr knitr biocViews jsonlite downloader RUnit BiocGenerics Biobase rmarkdown BiocStyle usethis devtools codetoolsBioC In total 37 packages are required directly or indirectly (103) when installing 'BiocCheck' (1.32.0) Imports Suggests Enhances Base packages that are required Contributed packages that are required Packages that are required for installing 'BiocCheck' Imported functions Imported S4 methods The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of BiocCheck.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on BiocCheck: number of required packages that can be reduced if moving parent package to Suggests of BiocCheck.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on BiocCheck
knitr Imports 1 0 0 12 9
httr Imports The whole set of functions/methods/classes from parent package is imported to the namespace of BiocCheck. 9 8
biocViews Imports The whole set of functions/methods/classes from parent package is imported to the namespace of BiocCheck. 16 8
stringdist Imports 1 0 0 1 2
codetools Imports 2 0 0 0 1
tools Imports 4 0 0 0 0
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of BiocCheck. 0 0
utils Imports 11 0 0 0 0
BiocManager Imports The whole set of functions/methods/classes from parent package is imported to the namespace of BiocCheck. 1 0
graph Imports 0 2 0 6 0
devtools Suggests No object is imported into the namespace of BiocCheck. 76 55
usethis Suggests No object is imported into the namespace of BiocCheck. 36 21
BiocStyle Suggests No object is imported into the namespace of BiocCheck. 30 15
rmarkdown Suggests No object is imported into the namespace of BiocCheck. 27 13
downloader Suggests No object is imported into the namespace of BiocCheck. 2 2
jsonlite Suggests No object is imported into the namespace of BiocCheck. 1 0
RUnit Suggests No object is imported into the namespace of BiocCheck. 3 0
BiocGenerics Suggests No object is imported into the namespace of BiocCheck. 4 0
Biobase Suggests No object is imported into the namespace of BiocCheck. 5 0
codetoolsBioC Enhances No object is imported into the namespace of BiocCheck. 0 1

Analysis was done with pkgndep.