Dependency analysis on package graph

General information

Bioconductor link link
Package version1.74.0
Number of strong dependencies6
Number of all dependencies16
Number of parent packages5
Max heaviness from parent packages2
Total heaviness from parent packages3
Number of parent packages (including Suggests and Enhances)11
Max co-heaviness from parent packages ("BiocGenerics" and "methods")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of graph and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on graph.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests Enhances utils methods graphics stats grDevices stats4 grid graph BiocGenerics BH 0 10 20 Imported methods 0 2 4 6 8 Required packages 0 2 4 Heaviness from parents methods BiocGenerics stats stats4 utils XML RUnit SparseM cluster RBGL Rgraphviz In total 6 packages are required directly or indirectly (16) when installing 'graph' (1.74.0) Depends Imports Suggests Enhances Base packages that are required Contributed packages that are required Packages that are required for installing 'graph' Imported functions Imported S4 methods Imported S4 classes


Dependency table

"Import" information is from the NAMESPACE file of graph.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on graph: number of required packages that can be reduced if moving parent package to Suggests of graph.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on graph
BiocGenerics Depends 1 0 2 4 2
methods Depends 10 3 10 0 0
stats4 Imports 1 0 0 0 1
stats Imports 4 0 0 0 0
utils Imports 2 0 0 0 0
RBGL Suggests No object is imported into the namespace of graph. 8 3
cluster Suggests No object is imported into the namespace of graph. 4 2
XML Suggests No object is imported into the namespace of graph. 2 1
RUnit Suggests No object is imported into the namespace of graph. 3 1
SparseM Suggests No object is imported into the namespace of graph. 4 1
Rgraphviz Enhances No object is imported into the namespace of graph. 9 4

Analysis was done with pkgndep.