Dependency analysis on package RBGL

General information

Bioconductor link link
Package version1.72.0
Number of strong dependencies8
Number of all dependencies13
Number of parent packages3
Max heaviness from parent packages6
Total heaviness from parent packages7
Number of parent packages (including Suggests and Enhances)7
Max co-heaviness from parent packages ("graph" and "methods")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of RBGL and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on RBGL.

Adjust heatmap size:
Base packages Other packages Depends LinkingTo Suggests methods utils graphics stats stats4 grid grDevices BiocGenerics graph 0 0.5 1 Imported methods 0 2 4 6 8 Required packages 0 2 4 6 Heaviness from parents methods graph BH XML RUnit BiocGenerics Rgraphviz In total 8 packages are required directly or indirectly (13) when installing 'RBGL' (1.72.0) Depends LinkingTo Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'RBGL' The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of RBGL.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on RBGL: number of required packages that can be reduced if moving parent package to Suggests of RBGL.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on RBGL
graph Depends The whole set of functions/methods/classes from parent package is imported to the namespace of RBGL. 6 6
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of RBGL. 0 0
BH LinkingTo Parent package is listed in LinkingTo of RBGL but no object from parent package is imported. 0 1
Rgraphviz Suggests No object is imported into the namespace of RBGL. 9 3
XML Suggests No object is imported into the namespace of RBGL. 2 1
RUnit Suggests No object is imported into the namespace of RBGL. 3 1
BiocGenerics Suggests No object is imported into the namespace of RBGL. 4 0

Analysis was done with pkgndep.