Dependency analysis on package BumpyMatrix

General information

Bioconductor link link
Package version1.4.0
Number of strong dependencies12
Number of all dependencies63
Number of parent packages5
Max heaviness from parent packages4
Total heaviness from parent packages5
Number of parent packages (including Suggests and Enhances)9
Max co-heaviness from parent packages ("IRanges" and "S4Vectors")3

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of BumpyMatrix and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on BumpyMatrix.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods stats utils graphics grDevices stats4 grid tools BiocGenerics lattice S4Vectors evaluate glue magrittr yaml xfun highr stringr stringi jsonlite digest rlang R6 knitr htmltools jquerylib tinytex bslib base64enc fastmap sass fs rappdirs bookdown rmarkdown BiocManager brio callr cli crayon desc ellipsis lifecycle pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 1 2 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents utils methods S4Vectors Matrix IRanges knitr rmarkdown BiocStyle testthat In total 12 packages are required directly or indirectly (63) when installing 'BumpyMatrix' (1.4.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'BumpyMatrix' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of BumpyMatrix.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on BumpyMatrix: number of required packages that can be reduced if moving parent package to Suggests of BumpyMatrix.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on BumpyMatrix
Matrix Imports 2 0 0 7 4
IRanges Imports The whole set of functions/methods/classes from parent package is imported to the namespace of BumpyMatrix. 7 1
utils Imports 2 0 0 0 0
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of BumpyMatrix. 0 0
S4Vectors Imports 1 0 0 6 0
testthat Suggests No object is imported into the namespace of BumpyMatrix. 36 32
BiocStyle Suggests No object is imported into the namespace of BumpyMatrix. 30 27
rmarkdown Suggests No object is imported into the namespace of BumpyMatrix. 27 24
knitr Suggests No object is imported into the namespace of BumpyMatrix. 12 10

Analysis was done with pkgndep.