Dependency analysis on package IRanges

General information

Bioconductor link link
Package version2.30.0
Number of strong dependencies7
Number of all dependencies116
Number of parent packages6
Max heaviness from parent packages1
Total heaviness from parent packages1
Number of parent packages (including Suggests and Enhances)15
Max co-heaviness from parent packages ("S4Vectors" and "BiocGenerics")2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of IRanges and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on IRanges.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils graphics stats stats4 tools grDevices parallel grid BiocGenerics S4Vectors IRanges zlibbioc GenomeInfoDb XVector RCurl GenomeInfoDbData bitops GenomicRanges Biostrings BiocParallel Rhtslib crayon futile.logger snow codetools BH lambda.r futile.options formatR yaml SummarizedExperiment Rsamtools MatrixGenerics Biobase Matrix DelayedArray matrixStats lattice stringr digest rappdirs rlang R6 glue magrittr stringi jsonlite fastmap BiocIO rtracklayer XML GenomicAlignments restfulr rjson bookdown knitr rmarkdown BiocManager htmltools jquerylib xfun tinytex evaluate highr bslib base64enc sass fs BSgenome AnnotationDbi DBI RSQLite biomaRt KEGGREST bit64 blob memoise pkgconfig Rcpp plogr progress httr BiocFileCache xml2 png bit vctrs cachem hms prettyunits curl mime openssl dbplyr dplyr filelock cli ellipsis lifecycle askpass assertthat pillar purrr tibble tidyselect withr generics sys fansi utf8 0 2 4 6 8 Imported methods 0 50 100 Required packages 0 20 40 60 80 Heaviness from parents methods utils stats BiocGenerics S4Vectors stats4 pasillaBamSubset RUnit XVector GenomicRanges Rsamtools BiocStyle GenomicAlignments BSgenome.Celegans.UCSC.ce2 GenomicFeatures In total 7 packages are required directly or indirectly (116) when installing 'IRanges' (2.30.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'IRanges' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of IRanges.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on IRanges: number of required packages that can be reduced if moving parent package to Suggests of IRanges.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on IRanges
S4Vectors Depends The whole set of functions/methods/classes from parent package is imported to the namespace of IRanges. 6 1
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of IRanges. 0 0
utils Depends 2 0 0 0 0
stats Depends 9 0 0 0 0
BiocGenerics Depends The whole set of functions/methods/classes from parent package is imported to the namespace of IRanges. 4 0
stats4 Imports 1 0 0 0 0
GenomicFeatures Suggests No object is imported into the namespace of IRanges. 96 90
BSgenome.Celegans.UCSC.ce2 Suggests No object is imported into the namespace of IRanges. 46 40
GenomicAlignments Suggests No object is imported into the namespace of IRanges. 38 32
BiocStyle Suggests No object is imported into the namespace of IRanges. 30 28
Rsamtools Suggests No object is imported into the namespace of IRanges. 29 23
GenomicRanges Suggests No object is imported into the namespace of IRanges. 15 9
XVector Suggests No object is imported into the namespace of IRanges. 10 4
pasillaBamSubset Suggests No object is imported into the namespace of IRanges. 0 1
RUnit Suggests No object is imported into the namespace of IRanges. 3 1

Analysis was done with pkgndep.