Dependency analysis on package beachmat

General information

Bioconductor link link
Package version2.12.0
Number of strong dependencies16
Number of all dependencies86
Number of parent packages5
Max heaviness from parent packages6
Total heaviness from parent packages7
Number of parent packages (including Suggests and Enhances)12
Max co-heaviness from parent packages ("DelayedArray" and "Matrix")4

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of beachmat and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on beachmat.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods utils stats grDevices graphics grid stats4 tools parallel lattice Matrix BiocGenerics MatrixGenerics S4Vectors IRanges matrixStats glue evaluate magrittr digest R6 yaml xfun highr stringr stringi jsonlite rlang callr cli crayon desc processx ps withr rprojroot knitr htmltools jquerylib tinytex bslib base64enc fastmap sass fs rappdirs futile.logger snow codetools BH lambda.r futile.options formatR DelayedArray rhdf5 rhdf5filters Rhdf5lib curl pkgbuild prettyunits sessioninfo xopen bookdown rmarkdown BiocManager brio ellipsis lifecycle pkgload praise waldo rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 10 20 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents methods Rcpp BiocGenerics Matrix DelayedArray BiocParallel knitr HDF5Array rcmdcheck rmarkdown BiocStyle testthat In total 16 packages are required directly or indirectly (86) when installing 'beachmat' (2.12.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'beachmat' Imported functions Imported S4 classes


Dependency table

"Import" information is from the NAMESPACE file of beachmat.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on beachmat: number of required packages that can be reduced if moving parent package to Suggests of beachmat.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on beachmat
DelayedArray Imports 23 0 2 14 6
Rcpp Imports 1 0 0 2 1
methods Imports 2 0 0 0 0
BiocGenerics Imports 2 0 0 4 0
Matrix Imports 1 0 5 7 0
testthat Suggests No object is imported into the namespace of beachmat. 36 32
BiocStyle Suggests No object is imported into the namespace of beachmat. 30 27
rmarkdown Suggests No object is imported into the namespace of beachmat. 27 24
rcmdcheck Suggests No object is imported into the namespace of beachmat. 22 18
knitr Suggests No object is imported into the namespace of beachmat. 12 10
BiocParallel Suggests No object is imported into the namespace of beachmat. 11 9
HDF5Array Suggests No object is imported into the namespace of beachmat. 19 5

Analysis was done with pkgndep.