Dependency analysis on package DelayedArray

General information

Bioconductor link link
Package version0.22.0
Number of strong dependencies14
Number of all dependencies98
Number of parent packages8
Max heaviness from parent packages4
Total heaviness from parent packages7
Number of parent packages (including Suggests and Enhances)19
Max co-heaviness from parent packages ("IRanges" and "S4Vectors")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of DelayedArray and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on DelayedArray.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils stats graphics grDevices stats4 grid tools parallel splines BiocGenerics lattice S4Vectors matrixStats Matrix IRanges rlang glue DelayedArray MatrixGenerics Rcpp evaluate highr stringr yaml xfun magrittr stringi Biobase XVector GenomeInfoDb zlibbioc RCurl GenomeInfoDbData bitops jsonlite R6 fastmap crayon GenomicRanges bslib htmltools jquerylib knitr tinytex sass digest base64enc fs rappdirs futile.logger snow codetools BH lambda.r futile.options formatR sparseMatrixStats rhdf5 rhdf5filters Rhdf5lib SummarizedExperiment bookdown rmarkdown BiocManager AnnotationDbi annotate survival DBI RSQLite KEGGREST XML xtable httr bit64 blob memoise pkgconfig plogr png Biostrings curl mime openssl bit vctrs cachem askpass cli sys 0 5 10 Imported methods 0 20 40 Required packages 0 20 40 Heaviness from parents methods stats4 MatrixGenerics BiocGenerics S4Vectors Matrix IRanges stats RUnit lobstr BiocParallel knitr DelayedMatrixStats HDF5Array SummarizedExperiment airway rmarkdown BiocStyle genefilter In total 14 packages are required directly or indirectly (98) when installing 'DelayedArray' (0.22.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'DelayedArray' Imported functions Imported S4 classes The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of DelayedArray.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on DelayedArray: number of required packages that can be reduced if moving parent package to Suggests of DelayedArray.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on DelayedArray
Matrix Depends 3 0 4 7 4
MatrixGenerics Depends The whole set of functions/methods/classes from parent package is imported to the namespace of DelayedArray. 2 2
IRanges Depends The whole set of functions/methods/classes from parent package is imported to the namespace of DelayedArray. 7 1
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of DelayedArray. 0 0
stats4 Depends 1 0 0 0 0
BiocGenerics Depends The whole set of functions/methods/classes from parent package is imported to the namespace of DelayedArray. 4 0
S4Vectors Depends The whole set of functions/methods/classes from parent package is imported to the namespace of DelayedArray. 6 0
stats Imports 13 0 0 0 0
genefilter Suggests No object is imported into the namespace of DelayedArray. 53 42
BiocStyle Suggests No object is imported into the namespace of DelayedArray. 30 27
rmarkdown Suggests No object is imported into the namespace of DelayedArray. 27 24
airway Suggests No object is imported into the namespace of DelayedArray. 25 12
SummarizedExperiment Suggests No object is imported into the namespace of DelayedArray. 24 11
knitr Suggests No object is imported into the namespace of DelayedArray. 12 10
BiocParallel Suggests No object is imported into the namespace of DelayedArray. 11 9
HDF5Array Suggests No object is imported into the namespace of DelayedArray. 19 6
lobstr Suggests No object is imported into the namespace of DelayedArray. 6 4
DelayedMatrixStats Suggests No object is imported into the namespace of DelayedArray. 17 4
RUnit Suggests No object is imported into the namespace of DelayedArray. 3 1

Analysis was done with pkgndep.