Dependency analysis on package DelayedMatrixStats

General information

Bioconductor link link
Package version1.18.0
Number of strong dependencies17
Number of all dependencies83
Number of parent packages8
Max heaviness from parent packages2
Total heaviness from parent packages3
Number of parent packages (including Suggests and Enhances)16
Max co-heaviness from parent packages ("IRanges" and "DelayedArray")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of DelayedMatrixStats and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on DelayedMatrixStats.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods stats utils graphics grDevices stats4 grid tools matrixStats BiocGenerics lattice Matrix MatrixGenerics S4Vectors IRanges Rcpp evaluate magrittr glue yaml digest jsonlite R6 highr stringr xfun stringi rlang crayon withr bslib htmltools jquerylib knitr tinytex sass base64enc fastmap fs rappdirs DelayedArray rhdf5 rhdf5filters Rhdf5lib rex httr lazyeval curl mime openssl askpass sys bookdown rmarkdown BiocManager brio callr cli desc ellipsis lifecycle pkgload praise processx ps waldo rprojroot rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 5 10 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents MatrixGenerics DelayedArray methods matrixStats S4Vectors Matrix IRanges sparseMatrixStats profmem microbenchmark knitr HDF5Array covr rmarkdown BiocStyle testthat In total 17 packages are required directly or indirectly (83) when installing 'DelayedMatrixStats' (1.18.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'DelayedMatrixStats' Imported functions Imported S4 methods Imported S4 classes The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of DelayedMatrixStats.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on DelayedMatrixStats: number of required packages that can be reduced if moving parent package to Suggests of DelayedMatrixStats.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on DelayedMatrixStats
DelayedArray Depends 7 2 1 14 1
MatrixGenerics Depends The whole set of functions/methods/classes from parent package is imported to the namespace of DelayedMatrixStats. 2 0
sparseMatrixStats Imports The whole set of functions/methods/classes from parent package is imported to the namespace of DelayedMatrixStats. 11 2
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of DelayedMatrixStats. 0 0
matrixStats Imports Parent package is listed in Imports of DelayedMatrixStats but no object from parent package is imported. 0 0
S4Vectors Imports 3 0 0 6 0
Matrix Imports 0 4 1 7 0
IRanges Imports 3 4 0 7 0
testthat Suggests No object is imported into the namespace of DelayedMatrixStats. 36 32
BiocStyle Suggests No object is imported into the namespace of DelayedMatrixStats. 30 27
rmarkdown Suggests No object is imported into the namespace of DelayedMatrixStats. 27 24
covr Suggests No object is imported into the namespace of DelayedMatrixStats. 20 16
knitr Suggests No object is imported into the namespace of DelayedMatrixStats. 12 10
HDF5Array Suggests No object is imported into the namespace of DelayedMatrixStats. 19 5
profmem Suggests No object is imported into the namespace of DelayedMatrixStats. 1 1
microbenchmark Suggests No object is imported into the namespace of DelayedMatrixStats. 2 1

Analysis was done with pkgndep.